Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026780 | XP_024627207.1 | 85.276 | 163 | 0 | 1 | 1 | 163 | 1 | 139 | 5.94e-93 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026780 | sp|Q9C9Y6|TRXH9_ARATH | 71.875 | 128 | 36 | 0 | 36 | 163 | 11 | 138 | 4.93e-68 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026780 | D8L5E3 | 85.276 | 163 | 0 | 1 | 1 | 163 | 1 | 139 | 2.84e-93 | 276 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0061970 | Msa1026780 | 0.818171 | 2.252961e-52 | -8.615850e-47 |
| Msa0111330 | Msa1026780 | 0.819324 | 1.233125e-52 | -8.615850e-47 |
| Msa0669760 | Msa1026780 | 0.802512 | 5.416074e-49 | -8.615850e-47 |
| Msa0707390 | Msa1026780 | 0.807377 | 5.206427e-50 | -8.615850e-47 |
| Msa1026780 | Msa1026810 | 0.956680 | 1.665380e-114 | -8.615850e-47 |
| Msa1026780 | Msa1154180 | 0.933424 | 1.917513e-95 | -8.615850e-47 |
| Msa1026780 | Msa1408150 | 0.806356 | 8.559977e-50 | -8.615850e-47 |
| Msa1026780 | Msa1452110 | 0.956171 | 5.525470e-114 | -8.615850e-47 |
| Msa0291520 | Msa1026780 | 0.806568 | 7.724093e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026780 | MtrunA17_Chr7g0245141 | 85.276 | 163 | 0 | 1 | 1 | 163 | 1 | 139 | 5.46e-97 | 276 |
| Msa1026780 | MtrunA17_Chr8g0334481 | 65.584 | 154 | 31 | 1 | 1 | 154 | 1 | 132 | 2.71e-72 | 213 |
| Msa1026780 | MtrunA17_Chr1g0155721 | 39.091 | 110 | 67 | 0 | 48 | 157 | 6 | 115 | 2.18e-29 | 104 |
| Msa1026780 | MtrunA17_Chr3g0142051 | 44.554 | 101 | 56 | 0 | 48 | 148 | 6 | 106 | 3.47e-29 | 103 |
| Msa1026780 | MtrunA17_Chr5g0404831 | 43.269 | 104 | 59 | 0 | 48 | 151 | 8 | 111 | 4.65e-29 | 103 |
| Msa1026780 | MtrunA17_Chr8g0393201 | 36.066 | 122 | 78 | 0 | 30 | 151 | 209 | 330 | 1.43e-27 | 105 |
| Msa1026780 | MtrunA17_Chr7g0216481 | 41.935 | 93 | 54 | 0 | 59 | 151 | 37 | 129 | 7.20e-25 | 93.2 |
| Msa1026780 | MtrunA17_Chr2g0280411 | 36.036 | 111 | 71 | 0 | 41 | 151 | 2 | 112 | 1.73e-23 | 89.4 |
| Msa1026780 | MtrunA17_Chr2g0319291 | 36.364 | 110 | 70 | 0 | 50 | 159 | 12 | 121 | 3.64e-23 | 88.6 |
| Msa1026780 | MtrunA17_Chr4g0042051 | 35.294 | 102 | 66 | 0 | 50 | 151 | 12 | 113 | 2.83e-21 | 84.0 |
| Msa1026780 | MtrunA17_Chr5g0415771 | 40.659 | 91 | 54 | 0 | 59 | 149 | 30 | 120 | 1.85e-17 | 73.9 |
| Msa1026780 | MtrunA17_Chr5g0415741 | 36.190 | 105 | 67 | 0 | 47 | 151 | 17 | 121 | 1.56e-16 | 71.6 |
| Msa1026780 | MtrunA17_Chr7g0264661 | 29.126 | 103 | 71 | 1 | 49 | 151 | 24 | 124 | 6.57e-16 | 70.1 |
| Msa1026780 | MtrunA17_Chr4g0052481 | 30.928 | 97 | 65 | 1 | 53 | 147 | 64 | 160 | 7.09e-16 | 70.9 |
| Msa1026780 | MtrunA17_Chr5g0415761 | 35.922 | 103 | 66 | 0 | 47 | 149 | 19 | 121 | 1.54e-15 | 68.9 |
| Msa1026780 | MtrunA17_Chr7g0249461 | 39.744 | 78 | 46 | 1 | 71 | 147 | 99 | 176 | 8.35e-12 | 60.5 |
| Msa1026780 | MtrunA17_Chr3g0125821 | 33.803 | 71 | 46 | 1 | 73 | 142 | 89 | 159 | 6.09e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026780 | AT3G08710.2 | 71.875 | 128 | 36 | 0 | 36 | 163 | 11 | 138 | 5.01e-69 | 206 |
| Msa1026780 | AT3G08710.3 | 71.875 | 128 | 36 | 0 | 36 | 163 | 11 | 138 | 5.01e-69 | 206 |
| Msa1026780 | AT3G08710.1 | 71.875 | 128 | 36 | 0 | 36 | 163 | 11 | 138 | 5.01e-69 | 206 |
| Msa1026780 | AT3G56420.1 | 51.376 | 109 | 53 | 0 | 48 | 156 | 40 | 148 | 1.16e-37 | 127 |
| Msa1026780 | AT3G56420.2 | 51.376 | 109 | 53 | 0 | 48 | 156 | 40 | 148 | 1.16e-37 | 127 |
| Msa1026780 | AT3G56420.3 | 51.376 | 109 | 53 | 0 | 48 | 156 | 40 | 148 | 1.16e-37 | 127 |
| Msa1026780 | AT2G40790.2 | 49.107 | 112 | 57 | 0 | 45 | 156 | 37 | 148 | 1.85e-36 | 124 |
| Msa1026780 | AT2G40790.1 | 49.107 | 112 | 57 | 0 | 45 | 156 | 37 | 148 | 1.85e-36 | 124 |
| Msa1026780 | AT3G51030.1 | 43.269 | 104 | 59 | 0 | 48 | 151 | 6 | 109 | 2.67e-30 | 106 |
| Msa1026780 | AT1G45145.1 | 40.000 | 105 | 63 | 0 | 48 | 152 | 5 | 109 | 2.93e-28 | 101 |
| Msa1026780 | AT1G19730.1 | 41.509 | 106 | 61 | 1 | 48 | 152 | 6 | 111 | 1.54e-26 | 97.4 |
| Msa1026780 | AT1G11530.1 | 38.462 | 104 | 64 | 0 | 48 | 151 | 2 | 105 | 2.21e-24 | 92.0 |
| Msa1026780 | AT5G39950.1 | 37.755 | 98 | 61 | 0 | 54 | 151 | 31 | 128 | 4.68e-24 | 91.7 |
| Msa1026780 | AT5G42980.1 | 38.235 | 102 | 63 | 0 | 46 | 147 | 3 | 104 | 8.08e-24 | 90.5 |
| Msa1026780 | AT3G17880.2 | 34.752 | 141 | 88 | 2 | 21 | 157 | 232 | 372 | 9.16e-24 | 95.9 |
| Msa1026780 | AT3G17880.1 | 34.752 | 141 | 88 | 2 | 21 | 157 | 239 | 379 | 1.18e-23 | 95.5 |
| Msa1026780 | AT1G59730.1 | 37.500 | 104 | 65 | 0 | 48 | 151 | 21 | 124 | 1.99e-23 | 89.7 |
| Msa1026780 | AT1G69880.1 | 35.354 | 99 | 64 | 0 | 53 | 151 | 42 | 140 | 2.89e-18 | 77.0 |
| Msa1026780 | AT3G53220.1 | 30.769 | 104 | 70 | 1 | 48 | 151 | 21 | 122 | 4.01e-16 | 70.9 |
| Msa1026780 | AT5G16400.1 | 33.088 | 136 | 83 | 4 | 17 | 147 | 43 | 175 | 2.11e-14 | 67.8 |
| Msa1026780 | AT2G35010.2 | 30.693 | 101 | 68 | 1 | 50 | 148 | 86 | 186 | 3.28e-13 | 64.7 |
| Msa1026780 | AT2G35010.1 | 30.693 | 101 | 68 | 1 | 50 | 148 | 86 | 186 | 3.28e-13 | 64.7 |
| Msa1026780 | AT3G02730.1 | 38.462 | 78 | 47 | 1 | 71 | 147 | 88 | 165 | 1.72e-11 | 59.7 |
| Msa1026780 | AT1G31020.1 | 29.358 | 109 | 72 | 2 | 45 | 148 | 43 | 151 | 3.96e-11 | 58.5 |
Find 65 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGGCTTTCAAATATTTAAA+TGG | 0.192746 | 7_1:-58956000 | Msa1026780:exon |
| TCTTTGCTTCTTCCAACTTT+TGG | 0.218358 | 7_1:+58954856 | None:intergenic |
| TTTCTGTTCTTAACCACTTT+TGG | 0.240630 | 7_1:-58955097 | Msa1026780:CDS |
| CTTCTCAAGCTCTGGCTTGT+TGG | 0.253102 | 7_1:+58953362 | None:intergenic |
| GGAATTTGTTCTGCTGAAAT+AGG | 0.269571 | 7_1:-58956064 | Msa1026780:five_prime_UTR |
| TTCTGCACTCCCCTTGAATA+TGG | 0.274707 | 7_1:-58952984 | Msa1026780:three_prime_UTR |
| AATTGTGTTTAAACAAGTTT+TGG | 0.293868 | 7_1:+58957546 | None:intergenic |
| CGGCTTTCAAATATTTAAAT+GGG | 0.329455 | 7_1:-58955999 | Msa1026780:exon |
| TCAGACATCTCGCAGTAATA+TGG | 0.336837 | 7_1:+58953740 | None:intergenic |
| ATTCATGTTTGTTGATGCTT+CGG | 0.368552 | 7_1:-58953285 | Msa1026780:three_prime_UTR |
| GGTAATAAGTGCCACATTCC+CGG | 0.372882 | 7_1:+58954896 | None:intergenic |
| ACTTTCTTCTTTCTTAAAGA+TGG | 0.380390 | 7_1:-58953411 | Msa1026780:CDS |
| GTTCATCCACATCAACTAAT+AGG | 0.380538 | 7_1:+58953696 | None:intergenic |
| CAACAACTTGACAAACTTGT+TGG | 0.404290 | 7_1:-58953387 | Msa1026780:CDS |
| AAAGAAAACTTACCGATTTG+AGG | 0.407940 | 7_1:+58957302 | None:intergenic |
| TGCAGGACTTCAGCACTTCA+TGG | 0.415805 | 7_1:-58953452 | Msa1026780:intron |
| TCCTTTCCGTATACCAAAAG+TGG | 0.430289 | 7_1:+58955084 | None:intergenic |
| TATTTAAATGGGGAATTGCT+TGG | 0.430735 | 7_1:-58955988 | Msa1026780:exon |
| ACAAGCTTCTTCTCAAGCTC+TGG | 0.435251 | 7_1:+58953354 | None:intergenic |
| CTTTCTGTTTCACCTCAAAT+CGG | 0.437943 | 7_1:-58957314 | Msa1026780:intron |
| ATTTCAGCGCTGTGTGGTGC+GGG | 0.443661 | 7_1:-58953781 | Msa1026780:CDS |
| CAATAGACTTATGATTTAAG+TGG | 0.466278 | 7_1:-58953038 | Msa1026780:three_prime_UTR |
| TTGGTCCCAAGCTTCTTTGG+TGG | 0.470738 | 7_1:+58954875 | None:intergenic |
| AATGGGGAATTGCTTGGCTA+AGG | 0.472308 | 7_1:-58955982 | Msa1026780:intron |
| AAATGTAACCACCATATTCA+AGG | 0.472327 | 7_1:+58952973 | None:intergenic |
| AATGCTTGTAGTCTCGGGAT+AGG | 0.474668 | 7_1:-58954953 | Msa1026780:intron |
| TGTGTGGTGCGGGCCTTGCA+AGG | 0.481266 | 7_1:-58953771 | Msa1026780:CDS |
| TCTTTAAGAAAGAAGAAAGT+TGG | 0.487293 | 7_1:+58953414 | None:intergenic |
| TATTACCACCAAAGAAGCTT+GGG | 0.487323 | 7_1:-58954880 | Msa1026780:CDS |
| CATTAAAGTTTACAAGTTAG+CGG | 0.487533 | 7_1:-58956019 | Msa1026780:five_prime_UTR |
| GAGAAGATAAAGTAGTATTG+TGG | 0.497839 | 7_1:+58957402 | None:intergenic |
| AATACAGTGGACCTCGTGCT+TGG | 0.502036 | 7_1:+58957375 | None:intergenic |
| AAAACAAGGAATAATAGAAA+AGG | 0.508546 | 7_1:-58955062 | Msa1026780:intron |
| ATGCTTGTAGTCTCGGGATA+GGG | 0.508948 | 7_1:-58954952 | Msa1026780:intron |
| AGAAGCTTGGGACCAAAAGT+TGG | 0.512115 | 7_1:-58954868 | Msa1026780:CDS |
| GCAGGACTTCAGCACTTCAT+GGG | 0.516790 | 7_1:-58953451 | Msa1026780:intron |
| AAAGTTGGAAGAAGCAAAGA+AGG | 0.520011 | 7_1:-58954853 | Msa1026780:CDS |
| AATTTCAGCGCTGTGTGGTG+CGG | 0.527326 | 7_1:-58953782 | Msa1026780:CDS |
| CAAGAATTCGCGACTTGTGA+GGG | 0.529543 | 7_1:+58953254 | None:intergenic |
| TTATTACCACCAAAGAAGCT+TGG | 0.535851 | 7_1:-58954881 | Msa1026780:CDS |
| TGCACTCCCCTTGAATATGG+TGG | 0.537234 | 7_1:-58952981 | Msa1026780:three_prime_UTR |
| CAACATGTGGAGTTTGCTGC+CGG | 0.540698 | 7_1:-58954915 | Msa1026780:CDS |
| AATGTAACCACCATATTCAA+GGG | 0.540798 | 7_1:+58952974 | None:intergenic |
| TATGGTGCAATCACCTTGCA+AGG | 0.556546 | 7_1:+58953758 | None:intergenic |
| AACATGTGGAGTTTGCTGCC+GGG | 0.559586 | 7_1:-58954914 | Msa1026780:CDS |
| GATGTTCCTATTAGTTGATG+TGG | 0.576876 | 7_1:-58953702 | Msa1026780:CDS |
| AAGAAAGAAGAAAGTTGGTG+TGG | 0.580578 | 7_1:+58953419 | None:intergenic |
| GGCTTTCAAATATTTAAATG+GGG | 0.589008 | 7_1:-58955998 | Msa1026780:exon |
| GGAGTTTGCTGCCGGGAATG+TGG | 0.597443 | 7_1:-58954907 | Msa1026780:CDS |
| TAACAATAATAATTGTGTTG+TGG | 0.604307 | 7_1:+58957435 | None:intergenic |
| GTTTAGAAGCACTCATGTCA+TGG | 0.605192 | 7_1:+58953230 | None:intergenic |
| TGAAATAGGCGGTCTTTCGT+CGG | 0.607226 | 7_1:-58956050 | Msa1026780:five_prime_UTR |
| TCAAGAATTCGCGACTTGTG+AGG | 0.608567 | 7_1:+58953253 | None:intergenic |
| TTGGAAGAAGCAAAGAAGGA+TGG | 0.617820 | 7_1:-58954849 | Msa1026780:CDS |
| ATTGTGAAAGTAGAGACAGA+AGG | 0.622029 | 7_1:+58957347 | None:intergenic |
| AAATAATTCAAAGACACTCA+CGG | 0.623663 | 7_1:+58953201 | None:intergenic |
| CTGAGGAACTGAATCAGCAA+TGG | 0.626817 | 7_1:+58953329 | None:intergenic |
| ACAAGTCACTGCTTATTCTG+AGG | 0.628145 | 7_1:+58953312 | None:intergenic |
| TCTTCTCTTCTCCAAGCACG+AGG | 0.632107 | 7_1:-58957386 | Msa1026780:five_prime_UTR |
| ATTTGTTCTGCTGAAATAGG+CGG | 0.639737 | 7_1:-58956061 | Msa1026780:five_prime_UTR |
| GGTATACGGAAAGGAAAACA+AGG | 0.648844 | 7_1:-58955076 | Msa1026780:CDS |
| CAATGATTCTGATCAACATG+TGG | 0.654075 | 7_1:-58954928 | Msa1026780:CDS |
| ATGTAACCACCATATTCAAG+GGG | 0.655718 | 7_1:+58952975 | None:intergenic |
| ACAGAAGGATACAAATACAG+TGG | 0.686734 | 7_1:+58957362 | None:intergenic |
| TTGCAAATTTCAGCGCTGTG+TGG | 0.691109 | 7_1:-58953787 | Msa1026780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTATTTATTTTTTGATG+GGG | - | chr7_1:58953339-58953358 | Msa1026780:CDS | 10.0% |
| !!! | CTTTTCAATTAAATAATTTA+TGG | + | chr7_1:58956130-58956149 | None:intergenic | 10.0% |
| !!! | TATACATTTTAATCAAATAT+GGG | + | chr7_1:58956602-58956621 | None:intergenic | 10.0% |
| !!! | TTATACATTTTAATCAAATA+TGG | + | chr7_1:58956603-58956622 | None:intergenic | 10.0% |
| !!! | TGTTTTTTTTACTGAAAAAT+AGG | + | chr7_1:58953049-58953068 | None:intergenic | 15.0% |
| !! | AAAGTAAATAAATTCCAAAT+GGG | + | chr7_1:58953535-58953554 | None:intergenic | 15.0% |
| !!! | CTTTATTTTATCTTTTGTTA+AGG | - | chr7_1:58956424-58956443 | Msa1026780:intron | 15.0% |
| !!! | GCTATATAATTTATTTTCTT+TGG | - | chr7_1:58956680-58956699 | Msa1026780:intron | 15.0% |
| !! | ATTATCATATATCAAATCTT+TGG | - | chr7_1:58956985-58957004 | Msa1026780:intron | 15.0% |
| !!! | TTTGAATTATTTTTTTTCCT+TGG | - | chr7_1:58957339-58957358 | Msa1026780:five_prime_UTR | 15.0% |
| !!! | AATTGTGTTTAAACAAGTTT+TGG | + | chr7_1:58952986-58953005 | None:intergenic | 20.0% |
| !! | TAACAATAATAATTGTGTTG+TGG | + | chr7_1:58953097-58953116 | None:intergenic | 20.0% |
| !! | GAAAATCAAATTGAAAACTA+AGG | + | chr7_1:58953300-58953319 | None:intergenic | 20.0% |
| !! | AAGTAAATAAATTCCAAATG+GGG | + | chr7_1:58953534-58953553 | None:intergenic | 20.0% |
| !! | CAAAGTAAATAAATTCCAAA+TGG | + | chr7_1:58953536-58953555 | None:intergenic | 20.0% |
| !! | AGGAAATAATTTCTGATATA+TGG | - | chr7_1:58954269-58954288 | Msa1026780:intron | 20.0% |
| !! | ATATAATATCTCTATTGTTC+TGG | - | chr7_1:58954432-58954451 | Msa1026780:intron | 20.0% |
| !! | TCATTAAAAGTTAAAGTTTG+AGG | - | chr7_1:58954614-58954633 | Msa1026780:intron | 20.0% |
| !! | TGTAAAAGTTAATCTCTATT+TGG | + | chr7_1:58954832-58954851 | None:intergenic | 20.0% |
| !! | AAAACAAGGAATAATAGAAA+AGG | - | chr7_1:58955467-58955486 | Msa1026780:intron | 20.0% |
| !! | CTCAGTAAAGATTTATATTA+AGG | - | chr7_1:58956103-58956122 | Msa1026780:intron | 20.0% |
| !! | TAAAAAGTAAGATAGAGTTA+AGG | + | chr7_1:58956659-58956678 | None:intergenic | 20.0% |
| !!! | ATGTTTTATATTTACATCCA+AGG | + | chr7_1:58957359-58957378 | None:intergenic | 20.0% |
| ! | TGATCACAAATCCAAATATT+GGG | - | chr7_1:58953495-58953514 | Msa1026780:intron | 25.0% |
| ! | CATTAAAAACTCCCAATATT+TGG | + | chr7_1:58953509-58953528 | None:intergenic | 25.0% |
| !! | TTTTTCGTTTTCCTTTTTTC+CGG | + | chr7_1:58953883-58953902 | None:intergenic | 25.0% |
| ! | AAATAAAAATCATTCCGAAC+CGG | + | chr7_1:58954081-58954100 | None:intergenic | 25.0% |
| !!! | TTGTTTTTTGAGTCTTTAAC+TGG | - | chr7_1:58954162-58954181 | Msa1026780:intron | 25.0% |
| ! | CATTAAAGTTTACAAGTTAG+CGG | - | chr7_1:58954510-58954529 | Msa1026780:intron | 25.0% |
| ! | CGGCTTTCAAATATTTAAAT+GGG | - | chr7_1:58954530-58954549 | Msa1026780:intron | 25.0% |
| ! | GGCTTTCAAATATTTAAATG+GGG | - | chr7_1:58954531-58954550 | Msa1026780:intron | 25.0% |
| ! | GTGGCAAAAACTTATTTATT+TGG | - | chr7_1:58954803-58954822 | Msa1026780:intron | 25.0% |
| !! | TAGAAACGACAGATTATTTT+AGG | - | chr7_1:58954981-58955000 | Msa1026780:intron | 25.0% |
| !!! | AGAAACGACAGATTATTTTA+GGG | - | chr7_1:58954982-58955001 | Msa1026780:intron | 25.0% |
| ! | TATCACCATTAAAAGATGAA+GGG | + | chr7_1:58955233-58955252 | None:intergenic | 25.0% |
| ! | TTATCACCATTAAAAGATGA+AGG | + | chr7_1:58955234-58955253 | None:intergenic | 25.0% |
| !! | CATCTTTTAATGGTGATAAA+CGG | - | chr7_1:58955235-58955254 | Msa1026780:intron | 25.0% |
| !! | TTACTTCTAGTTACAGATTA+GGG | + | chr7_1:58955384-58955403 | None:intergenic | 25.0% |
| !! | ATTACTTCTAGTTACAGATT+AGG | + | chr7_1:58955385-58955404 | None:intergenic | 25.0% |
| ! | TGAACTGCATATTAAAAAGT+AGG | + | chr7_1:58955729-58955748 | None:intergenic | 25.0% |
| ! | ATGCAGTTCAATAAAATTGA+AGG | - | chr7_1:58955739-58955758 | Msa1026780:intron | 25.0% |
| ! | ACATTTGTATACTTGGTATT+CGG | - | chr7_1:58955823-58955842 | Msa1026780:intron | 25.0% |
| ! | AAAAATTCCTAACGAGATTA+TGG | + | chr7_1:58955872-58955891 | None:intergenic | 25.0% |
| !!! | TAATCTCGTTAGGAATTTTT+TGG | - | chr7_1:58955872-58955891 | Msa1026780:intron | 25.0% |
| !! | TTAGCTTATCTAGATTTTAC+TGG | - | chr7_1:58956269-58956288 | Msa1026780:intron | 25.0% |
| ! | ATATTGTTTGGTATAGCTTA+TGG | - | chr7_1:58956306-58956325 | Msa1026780:intron | 25.0% |
| ! | AATAAGCTGGAAAAAACTTA+TGG | + | chr7_1:58956350-58956369 | None:intergenic | 25.0% |
| !! | ATCTTTGGCTTATATACTTT+AGG | - | chr7_1:58957000-58957019 | Msa1026780:intron | 25.0% |
| !! | TCTTTAAGAAAGAAGAAAGT+TGG | + | chr7_1:58957118-58957137 | None:intergenic | 25.0% |
| ! | ACTTTCTTCTTTCTTAAAGA+TGG | - | chr7_1:58957118-58957137 | Msa1026780:intron | 25.0% |
| ! | AAATAATTCAAAGACACTCA+CGG | + | chr7_1:58957331-58957350 | None:intergenic | 25.0% |
| ! | CATTATTGTCTAAGAAAAAG+TGG | - | chr7_1:58957454-58957473 | Msa1026780:five_prime_UTR | 25.0% |
| ! | CAATAGACTTATGATTTAAG+TGG | - | chr7_1:58957491-58957510 | Msa1026780:five_prime_UTR | 25.0% |
| GAGAAGATAAAGTAGTATTG+TGG | + | chr7_1:58953130-58953149 | None:intergenic | 30.0% | |
| !! | AAAGAAAACTTACCGATTTG+AGG | + | chr7_1:58953230-58953249 | None:intergenic | 30.0% |
| AATTGAAAACTAAGGTGTGA+GGG | + | chr7_1:58953292-58953311 | None:intergenic | 30.0% | |
| AAATTGAAAACTAAGGTGTG+AGG | + | chr7_1:58953293-58953312 | None:intergenic | 30.0% | |
| TGAGAAACAAGAAAGGAAAA+AGG | + | chr7_1:58953466-58953485 | None:intergenic | 30.0% | |
| CTGATCACAAATCCAAATAT+TGG | - | chr7_1:58953494-58953513 | Msa1026780:intron | 30.0% | |
| ! | AGTTTTTAATGTACCCCATT+TGG | - | chr7_1:58953518-58953537 | Msa1026780:intron | 30.0% |
| AGTACTTGTGTTATGTCTTA+AGG | - | chr7_1:58953571-58953590 | Msa1026780:intron | 30.0% | |
| AGGGTTAAAGATTGTTTCAA+CGG | - | chr7_1:58953692-58953711 | Msa1026780:CDS | 30.0% | |
| ! | TTATTTCTCAAACTTGCACA+CGG | + | chr7_1:58953735-58953754 | None:intergenic | 30.0% |
| !! | TGTACAGATAGTTGTTGTTT+AGG | - | chr7_1:58953786-58953805 | Msa1026780:CDS | 30.0% |
| !! | GTACAGATAGTTGTTGTTTA+GGG | - | chr7_1:58953787-58953806 | Msa1026780:CDS | 30.0% |
| ! | TTTTCGTTTTCCTTTTTTCC+GGG | + | chr7_1:58953882-58953901 | None:intergenic | 30.0% |
| AATGACAAAAGAATCAACTG+CGG | - | chr7_1:58953901-58953920 | Msa1026780:intron | 30.0% | |
| TGGATAAACTTCTCAAGAAA+CGG | + | chr7_1:58954056-58954075 | None:intergenic | 30.0% | |
| TTCCTTACATACATTTCTGA+AGG | + | chr7_1:58954254-58954273 | None:intergenic | 30.0% | |
| ATGGCTAAGTGAACATTTAT+TGG | - | chr7_1:58954288-58954307 | Msa1026780:intron | 30.0% | |
| TAATATCTCTATTGTTCTGG+TGG | - | chr7_1:58954435-58954454 | Msa1026780:intron | 30.0% | |
| GCGGCTTTCAAATATTTAAA+TGG | - | chr7_1:58954529-58954548 | Msa1026780:intron | 30.0% | |
| TATTTAAATGGGGAATTGCT+TGG | - | chr7_1:58954541-58954560 | Msa1026780:intron | 30.0% | |
| TTGGCTAAGGTAAGAATATT+TGG | - | chr7_1:58954560-58954579 | Msa1026780:intron | 30.0% | |
| TTTATCAGAGTACAGGATAA+AGG | + | chr7_1:58954640-58954659 | None:intergenic | 30.0% | |
| TGTACAATTTATCAGAGTAC+AGG | + | chr7_1:58954647-58954666 | None:intergenic | 30.0% | |
| TAAGATCACTCTATAAGCAA+AGG | - | chr7_1:58954669-58954688 | Msa1026780:intron | 30.0% | |
| ! | AAGTTTTTGCCACAAAAAGA+CGG | + | chr7_1:58954796-58954815 | None:intergenic | 30.0% |
| ! | CTGTTTAATTTATCTGCTAC+TGG | + | chr7_1:58954891-58954910 | None:intergenic | 30.0% |
| GAAACTAATGAAAGCTATGT+AGG | - | chr7_1:58954955-58954974 | Msa1026780:intron | 30.0% | |
| ATCACCATTAAAAGATGAAG+GGG | + | chr7_1:58955232-58955251 | None:intergenic | 30.0% | |
| ATCAGTTATGAGAAGGAATA+TGG | + | chr7_1:58955308-58955327 | None:intergenic | 30.0% | |
| ! | CTGAATTAATACGTTTTCAC+AGG | + | chr7_1:58955347-58955366 | None:intergenic | 30.0% |
| AACAGAAAAATCACAGATAG+AGG | + | chr7_1:58955420-58955439 | None:intergenic | 30.0% | |
| ! | TTTCTGTTCTTAACCACTTT+TGG | - | chr7_1:58955432-58955451 | Msa1026780:intron | 30.0% |
| !! | TCTTAACCACTTTTGGTATA+CGG | - | chr7_1:58955439-58955458 | Msa1026780:intron | 30.0% |
| ! | GAATAATAGAAAAGGTGTGT+AGG | - | chr7_1:58955475-58955494 | Msa1026780:intron | 30.0% |
| ! | GTTTTTAATGCTTGTAGTCT+CGG | - | chr7_1:58955570-58955589 | Msa1026780:intron | 30.0% |
| ! | TTTTTAATGCTTGTAGTCTC+GGG | - | chr7_1:58955571-58955590 | Msa1026780:intron | 30.0% |
| ATACCAAGTATACAAATGTG+CGG | + | chr7_1:58955822-58955841 | None:intergenic | 30.0% | |
| ! | ATCTAGATTTTACTGGCATA+AGG | - | chr7_1:58956276-58956295 | Msa1026780:intron | 30.0% |
| TAAGGACATGCAATATTGTT+TGG | - | chr7_1:58956294-58956313 | Msa1026780:intron | 30.0% | |
| GTAAACTGTTTATCCAAACA+AGG | - | chr7_1:58956502-58956521 | Msa1026780:intron | 30.0% | |
| ACTAGCAATTACTGCTAATA+TGG | + | chr7_1:58956528-58956547 | None:intergenic | 30.0% | |
| GAGTTAAGGAAAATATATGC+TGG | + | chr7_1:58956645-58956664 | None:intergenic | 30.0% | |
| TTGCCACATGACATATTTAA+GGG | + | chr7_1:58957028-58957047 | None:intergenic | 30.0% | |
| ! | ATTCATGTTTGTTGATGCTT+CGG | - | chr7_1:58957244-58957263 | Msa1026780:intron | 30.0% |
| TATTGTCTAAGAAAAAGTGG+TGG | - | chr7_1:58957457-58957476 | Msa1026780:five_prime_UTR | 30.0% | |
| ACAGAAGGATACAAATACAG+TGG | + | chr7_1:58953170-58953189 | None:intergenic | 35.0% | |
| ATTGTGAAAGTAGAGACAGA+AGG | + | chr7_1:58953185-58953204 | None:intergenic | 35.0% | |
| CTTTCTGTTTCACCTCAAAT+CGG | - | chr7_1:58953215-58953234 | Msa1026780:three_prime_UTR | 35.0% | |
| TACTGGTGCTTGAATAAAAG+AGG | + | chr7_1:58953261-58953280 | None:intergenic | 35.0% | |
| GATGGGGTTGTTTATATTGA+TGG | - | chr7_1:58953355-58953374 | Msa1026780:CDS | 35.0% | |
| AAACTGCTGAGAAACAAGAA+AGG | + | chr7_1:58953473-58953492 | None:intergenic | 35.0% | |
| !!! | TTTTGTTGGTCTTAACCATC+TGG | - | chr7_1:58953615-58953634 | Msa1026780:intron | 35.0% |
| TCTTAACCATCTGGTTACTA+AGG | - | chr7_1:58953624-58953643 | Msa1026780:intron | 35.0% | |
| CTTAACCATCTGGTTACTAA+GGG | - | chr7_1:58953625-58953644 | Msa1026780:intron | 35.0% | |
| TGTCGAGAGGTAATAAAGTA+GGG | - | chr7_1:58953673-58953692 | Msa1026780:intron | 35.0% | |
| ATGACAAAAGAATCAACTGC+GGG | - | chr7_1:58953902-58953921 | Msa1026780:intron | 35.0% | |
| TCATATCAGGCATTTACTGT+TGG | + | chr7_1:58953950-58953969 | None:intergenic | 35.0% | |
| AGTAAATGCCTGATATGAGT+CGG | - | chr7_1:58953952-58953971 | Msa1026780:intron | 35.0% | |
| CTTGAGAAGTTTATCCAATC+CGG | - | chr7_1:58954059-58954078 | Msa1026780:intron | 35.0% | |
| CACCTTCAGAAATGTATGTA+AGG | - | chr7_1:58954249-58954268 | Msa1026780:intron | 35.0% | |
| TATTGTTCTGGTGGAATTCA+GGG | - | chr7_1:58954444-58954463 | Msa1026780:intron | 35.0% | |
| ! | GGAATTTGTTCTGCTGAAAT+AGG | - | chr7_1:58954465-58954484 | Msa1026780:intron | 35.0% |
| ATTTGTTCTGCTGAAATAGG+CGG | - | chr7_1:58954468-58954487 | Msa1026780:intron | 35.0% | |
| ! | GTCAAACATGCTATTTACTG+TGG | - | chr7_1:58954587-58954606 | Msa1026780:intron | 35.0% |
| !! | TTATGCGTTGATTCTACCAA+AGG | + | chr7_1:58954728-58954747 | None:intergenic | 35.0% |
| TTTGGTAGAATCAACGCATA+AGG | - | chr7_1:58954727-58954746 | Msa1026780:intron | 35.0% | |
| CTCAGATGAATTAGAACAAC+TGG | + | chr7_1:58955011-58955030 | None:intergenic | 35.0% | |
| GTTATGAGAAGGAATATGGA+TGG | + | chr7_1:58955304-58955323 | None:intergenic | 35.0% | |
| CTGCAATATCAGTTATGAGA+AGG | + | chr7_1:58955315-58955334 | None:intergenic | 35.0% | |
| CAATGATTCTGATCAACATG+TGG | - | chr7_1:58955601-58955620 | Msa1026780:intron | 35.0% | |
| TTATTACCACCAAAGAAGCT+TGG | - | chr7_1:58955648-58955667 | Msa1026780:intron | 35.0% | |
| TATTACCACCAAAGAAGCTT+GGG | - | chr7_1:58955649-58955668 | Msa1026780:intron | 35.0% | |
| ! | TCTTTGCTTCTTCCAACTTT+TGG | + | chr7_1:58955676-58955695 | None:intergenic | 35.0% |
| AAAGTTGGAAGAAGCAAAGA+AGG | - | chr7_1:58955676-58955695 | Msa1026780:intron | 35.0% | |
| AGCAAAACAACACAGCAAAA+TGG | + | chr7_1:58955772-58955791 | None:intergenic | 35.0% | |
| TTACCGCACATTTGTATACT+TGG | - | chr7_1:58955816-58955835 | Msa1026780:intron | 35.0% | |
| AATTCCTAACGAGATTATGG+CGG | + | chr7_1:58955869-58955888 | None:intergenic | 35.0% | |
| !!! | TCTCGTTAGGAATTTTTTGG+CGG | - | chr7_1:58955875-58955894 | Msa1026780:intron | 35.0% |
| CCAAAAAAAAACAGAGACAC+TGG | + | chr7_1:58956185-58956204 | None:intergenic | 35.0% | |
| !!! | CCAGTGTCTCTGTTTTTTTT+TGG | - | chr7_1:58956182-58956201 | Msa1026780:intron | 35.0% |
| ! | GATGTTCCTATTAGTTGATG+TGG | - | chr7_1:58956827-58956846 | Msa1026780:intron | 35.0% |
| GTTCATCCACATCAACTAAT+AGG | + | chr7_1:58956836-58956855 | None:intergenic | 35.0% | |
| TGTTTGTCCCCCATATTTAA+GGG | + | chr7_1:58956948-58956967 | None:intergenic | 35.0% | |
| ATGTTTGTCCCCCATATTTA+AGG | + | chr7_1:58956949-58956968 | None:intergenic | 35.0% | |
| TGCCACATGACATATTTAAG+GGG | + | chr7_1:58957027-58957046 | None:intergenic | 35.0% | |
| GTTGCCACATGACATATTTA+AGG | + | chr7_1:58957029-58957048 | None:intergenic | 35.0% | |
| GCAACACATTTGATTGAACA+TGG | - | chr7_1:58957044-58957063 | Msa1026780:intron | 35.0% | |
| !! | AAGAAAGAAGAAAGTTGGTG+TGG | + | chr7_1:58957113-58957132 | None:intergenic | 35.0% |
| CAACAACTTGACAAACTTGT+TGG | - | chr7_1:58957142-58957161 | Msa1026780:intron | 35.0% | |
| AAGAAAAAGTGGTGGTTACA+TGG | - | chr7_1:58957465-58957484 | Msa1026780:five_prime_UTR | 35.0% | |
| TCTTTCCCTTAGTAACCAGA+TGG | + | chr7_1:58953633-58953652 | None:intergenic | 40.0% | |
| ATCTGGTTACTAAGGGAAAG+AGG | - | chr7_1:58953632-58953651 | Msa1026780:intron | 40.0% | |
| GTGTCGAGAGGTAATAAAGT+AGG | - | chr7_1:58953672-58953691 | Msa1026780:intron | 40.0% | |
| TGTTTCAACGGTTCCTTTGT+CGG | - | chr7_1:58953704-58953723 | Msa1026780:CDS | 40.0% | |
| CTTTATTCGTAACCTAAGCC+CGG | - | chr7_1:58953861-58953880 | Msa1026780:intron | 40.0% | |
| ! | TTTTCCTTTTTTCCGGGCTT+AGG | + | chr7_1:58953876-58953895 | None:intergenic | 40.0% |
| TGACAAAAGAATCAACTGCG+GGG | - | chr7_1:58953903-58953922 | Msa1026780:intron | 40.0% | |
| TATCAGGCATTTACTGTTGG+CGG | + | chr7_1:58953947-58953966 | None:intergenic | 40.0% | |
| GCATATGTGTTAGCCAATCT+CGG | + | chr7_1:58954017-58954036 | None:intergenic | 40.0% | |
| GAAGTTTATCCAATCCGGTT+CGG | - | chr7_1:58954064-58954083 | Msa1026780:intron | 40.0% | |
| AAAATCATTCCGAACCGGAT+TGG | + | chr7_1:58954076-58954095 | None:intergenic | 40.0% | |
| ! | TGAAGGTGCAAAATCAAGCA+GGG | + | chr7_1:58954237-58954256 | None:intergenic | 40.0% |
| CATCATGAGCATAGAAGAAC+AGG | + | chr7_1:58954350-58954369 | None:intergenic | 40.0% | |
| CTATTGTTCTGGTGGAATTC+AGG | - | chr7_1:58954443-58954462 | Msa1026780:intron | 40.0% | |
| TTTCCAAGTGTGTAGTGTGT+TGG | - | chr7_1:58954701-58954720 | Msa1026780:intron | 40.0% | |
| GCATACAACACAATACGCAA+AGG | + | chr7_1:58954866-58954885 | None:intergenic | 40.0% | |
| CAGTTCAAATTACACTGCCT+AGG | - | chr7_1:58955048-58955067 | Msa1026780:intron | 40.0% | |
| ! | ACTCTTTTCACGAGTTACCT+AGG | + | chr7_1:58955068-58955087 | None:intergenic | 40.0% |
| ATTAAAAGATGAAGGGGAGG+AGG | + | chr7_1:58955226-58955245 | None:intergenic | 40.0% | |
| ! | TCCTCCCCTTCATCTTTTAA+TGG | - | chr7_1:58955225-58955244 | Msa1026780:intron | 40.0% |
| ACCATTAAAAGATGAAGGGG+AGG | + | chr7_1:58955229-58955248 | None:intergenic | 40.0% | |
| !! | ACCACTTTTGGTATACGGAA+AGG | - | chr7_1:58955444-58955463 | Msa1026780:intron | 40.0% |
| TCCTTTCCGTATACCAAAAG+TGG | + | chr7_1:58955448-58955467 | None:intergenic | 40.0% | |
| GGTATACGGAAAGGAAAACA+AGG | - | chr7_1:58955453-58955472 | Msa1026780:intron | 40.0% | |
| TTGGAAGAAGCAAAGAAGGA+TGG | - | chr7_1:58955680-58955699 | Msa1026780:intron | 40.0% | |
| ATGTGCGGTAAATTCTAGCA+AGG | + | chr7_1:58955807-58955826 | None:intergenic | 40.0% | |
| AAAACCGCCATAATCTCGTT+AGG | - | chr7_1:58955862-58955881 | Msa1026780:intron | 40.0% | |
| CACATGACTTTGAGTCAGTT+TGG | - | chr7_1:58955931-58955950 | Msa1026780:intron | 40.0% | |
| AAGTTCTTTCGAGCTAGAAG+TGG | - | chr7_1:58956147-58956166 | Msa1026780:intron | 40.0% | |
| GCTAGAAGTGGATCTGAATT+AGG | - | chr7_1:58956159-58956178 | Msa1026780:intron | 40.0% | |
| ! | TTTTTCTTTGCCCGATCTAG+TGG | - | chr7_1:58956210-58956229 | Msa1026780:intron | 40.0% |
| TATCTACACCACCACTAGAT+CGG | + | chr7_1:58956224-58956243 | None:intergenic | 40.0% | |
| ! | TCTAGTGGTGGTGTAGATAT+AGG | - | chr7_1:58956225-58956244 | Msa1026780:intron | 40.0% |
| ! | CTAGTGGTGGTGTAGATATA+GGG | - | chr7_1:58956226-58956245 | Msa1026780:intron | 40.0% |
| GAGAGCTTATGGAAATAAGC+TGG | + | chr7_1:58956363-58956382 | None:intergenic | 40.0% | |
| CTTATTTCCATAAGCTCTCC+AGG | - | chr7_1:58956364-58956383 | Msa1026780:intron | 40.0% | |
| !! | ACTGCTAATATGGCCTTGTT+TGG | + | chr7_1:58956518-58956537 | None:intergenic | 40.0% |
| ACTAAAGCTCCTTGTTCAAC+AGG | - | chr7_1:58956716-58956735 | Msa1026780:intron | 40.0% | |
| TTGCAATCACCTGTTGAACA+AGG | + | chr7_1:58956728-58956747 | None:intergenic | 40.0% | |
| TCAGACATCTCGCAGTAATA+TGG | + | chr7_1:58956792-58956811 | None:intergenic | 40.0% | |
| ACTAGCACTCCCCTTAAATA+TGG | - | chr7_1:58956935-58956954 | Msa1026780:intron | 40.0% | |
| CTAGCACTCCCCTTAAATAT+GGG | - | chr7_1:58956936-58956955 | Msa1026780:intron | 40.0% | |
| TAGCACTCCCCTTAAATATG+GGG | - | chr7_1:58956937-58956956 | Msa1026780:intron | 40.0% | |
| GTTTGTCCCCCATATTTAAG+GGG | + | chr7_1:58956947-58956966 | None:intergenic | 40.0% | |
| GTCCCCTTAAATATGTCATG+TGG | - | chr7_1:58957022-58957041 | Msa1026780:intron | 40.0% | |
| AACATGGTTGTGTATGTTGC+AGG | - | chr7_1:58957060-58957079 | Msa1026780:intron | 40.0% | |
| ACAAGTCACTGCTTATTCTG+AGG | + | chr7_1:58957220-58957239 | None:intergenic | 40.0% | |
| !! | GTTTAGAAGCACTCATGTCA+TGG | + | chr7_1:58957302-58957321 | None:intergenic | 40.0% |
| ! | GGGAAAGAGGTCTTGTAATC+TGG | - | chr7_1:58953645-58953664 | Msa1026780:intron | 45.0% |
| ! | TAATCTGGAGTTGTGTCGAG+AGG | - | chr7_1:58953660-58953679 | Msa1026780:intron | 45.0% |
| GTTTCAACGGTTCCTTTGTC+GGG | - | chr7_1:58953705-58953724 | Msa1026780:CDS | 45.0% | |
| TTTCAACGGTTCCTTTGTCG+GGG | - | chr7_1:58953706-58953725 | Msa1026780:CDS | 45.0% | |
| GTAACCTAAGCCCGGAAAAA+AGG | - | chr7_1:58953869-58953888 | Msa1026780:intron | 45.0% | |
| ! | TTACTGTTGGCGGACGTTAT+GGG | + | chr7_1:58953937-58953956 | None:intergenic | 45.0% |
| ! | TTTACTGTTGGCGGACGTTA+TGG | + | chr7_1:58953938-58953957 | None:intergenic | 45.0% |
| ! | AGTCTTGTCCGACTCATATC+AGG | + | chr7_1:58953963-58953982 | None:intergenic | 45.0% |
| CACCCCTCTTCTATGATTGA+CGG | - | chr7_1:58954126-58954145 | Msa1026780:intron | 45.0% | |
| ACCCCTCTTCTATGATTGAC+GGG | - | chr7_1:58954127-58954146 | Msa1026780:intron | 45.0% | |
| TCCCCGTCAATCATAGAAGA+GGG | + | chr7_1:58954132-58954151 | None:intergenic | 45.0% | |
| TTCCCCGTCAATCATAGAAG+AGG | + | chr7_1:58954133-58954152 | None:intergenic | 45.0% | |
| CTTCTATGATTGACGGGGAA+TGG | - | chr7_1:58954133-58954152 | Msa1026780:intron | 45.0% | |
| TATGATTGACGGGGAATGGA+GGG | - | chr7_1:58954137-58954156 | Msa1026780:intron | 45.0% | |
| ! | GAAGGTGCAAAATCAAGCAG+GGG | + | chr7_1:58954236-58954255 | None:intergenic | 45.0% |
| ! | CTGAAGGTGCAAAATCAAGC+AGG | + | chr7_1:58954238-58954257 | None:intergenic | 45.0% |
| TGAAATAGGCGGTCTTTCGT+CGG | - | chr7_1:58954479-58954498 | Msa1026780:intron | 45.0% | |
| AATGGGGAATTGCTTGGCTA+AGG | - | chr7_1:58954547-58954566 | Msa1026780:intron | 45.0% | |
| ! | TGTGTAGTGTGTTGGTCCTT+TGG | - | chr7_1:58954709-58954728 | Msa1026780:intron | 45.0% |
| AATGCTTGTAGTCTCGGGAT+AGG | - | chr7_1:58955576-58955595 | Msa1026780:intron | 45.0% | |
| ATGCTTGTAGTCTCGGGATA+GGG | - | chr7_1:58955577-58955596 | Msa1026780:intron | 45.0% | |
| GGTAATAAGTGCCACATTCC+CGG | + | chr7_1:58955636-58955655 | None:intergenic | 45.0% | |
| ! | CTTTTGGTCCCAAGCTTCTT+TGG | + | chr7_1:58955660-58955679 | None:intergenic | 45.0% |
| AGAAGCTTGGGACCAAAAGT+TGG | - | chr7_1:58955661-58955680 | Msa1026780:intron | 45.0% | |
| ATCTACACCACCACTAGATC+GGG | + | chr7_1:58956223-58956242 | None:intergenic | 45.0% | |
| AAGCTATCCTGGAGAGCTTA+TGG | + | chr7_1:58956374-58956393 | None:intergenic | 45.0% | |
| AAGCTCTCCAGGATAGCTTA+TGG | - | chr7_1:58956375-58956394 | Msa1026780:intron | 45.0% | |
| ! | GCTGTTTCCATAAGCTATCC+TGG | + | chr7_1:58956385-58956404 | None:intergenic | 45.0% |
| TTGCAAATTTCAGCGCTGTG+TGG | - | chr7_1:58956742-58956761 | Msa1026780:intron | 45.0% | |
| TATGGTGCAATCACCTTGCA+AGG | + | chr7_1:58956774-58956793 | None:intergenic | 45.0% | |
| AGCACTCCCCTTAAATATGG+GGG | - | chr7_1:58956938-58956957 | Msa1026780:intron | 45.0% | |
| ACAAGCTTCTTCTCAAGCTC+TGG | + | chr7_1:58957178-58957197 | None:intergenic | 45.0% | |
| CTGAGGAACTGAATCAGCAA+TGG | + | chr7_1:58957203-58957222 | None:intergenic | 45.0% | |
| CAAGAATTCGCGACTTGTGA+GGG | + | chr7_1:58957278-58957297 | None:intergenic | 45.0% | |
| TCAAGAATTCGCGACTTGTG+AGG | + | chr7_1:58957279-58957298 | None:intergenic | 45.0% | |
| TTCTGCACTCCCCTTGAATA+TGG | - | chr7_1:58957545-58957564 | Msa1026780:five_prime_UTR | 45.0% | |
| !!! | TTTATTTATTTATTTTTTGA+TGG | - | chr7_1:58953337-58953356 | Msa1026780:CDS | 5.0% |
| !!! | TTATTTATTTATTTTTTGAT+GGG | - | chr7_1:58953338-58953357 | Msa1026780:CDS | 5.0% |
| !!! | TTATTTATTTTTTTTTTTGT+TGG | - | chr7_1:58953601-58953620 | Msa1026780:intron | 5.0% |
| TCTTCTCTTCTCCAAGCACG+AGG | - | chr7_1:58953143-58953162 | Msa1026780:three_prime_UTR | 50.0% | |
| AATACAGTGGACCTCGTGCT+TGG | + | chr7_1:58953157-58953176 | None:intergenic | 50.0% | |
| !! | GTGTGAGGGTGCTAGATTAC+TGG | + | chr7_1:58953278-58953297 | None:intergenic | 50.0% |
| ! | TACTGTTGGCGGACGTTATG+GGG | + | chr7_1:58953936-58953955 | None:intergenic | 50.0% |
| GATCAAACAGCAGCCGAGAT+TGG | - | chr7_1:58954001-58954020 | Msa1026780:intron | 50.0% | |
| CCCCGTCAATCATAGAAGAG+GGG | + | chr7_1:58954131-58954150 | None:intergenic | 50.0% | |
| CCCCTCTTCTATGATTGACG+GGG | - | chr7_1:58954128-58954147 | Msa1026780:intron | 50.0% | |
| CTATGATTGACGGGGAATGG+AGG | - | chr7_1:58954136-58954155 | Msa1026780:intron | 50.0% | |
| GTGCAAAATCAAGCAGGGGA+AGG | + | chr7_1:58954232-58954251 | None:intergenic | 50.0% | |
| GGACCAACACACTACACACT+TGG | + | chr7_1:58954707-58954726 | None:intergenic | 50.0% | |
| TTTGCCACAAAAAGACGGCG+CGG | + | chr7_1:58954791-58954810 | None:intergenic | 50.0% | |
| ATGAAGGGGAGGAGGTTTAG+GGG | + | chr7_1:58955218-58955237 | None:intergenic | 50.0% | |
| GATGAAGGGGAGGAGGTTTA+GGG | + | chr7_1:58955219-58955238 | None:intergenic | 50.0% | |
| AGATGAAGGGGAGGAGGTTT+AGG | + | chr7_1:58955220-58955239 | None:intergenic | 50.0% | |
| !! | CAACATGTGGAGTTTGCTGC+CGG | - | chr7_1:58955614-58955633 | Msa1026780:intron | 50.0% |
| !! | AACATGTGGAGTTTGCTGCC+GGG | - | chr7_1:58955615-58955634 | Msa1026780:intron | 50.0% |
| TTGGTCCCAAGCTTCTTTGG+TGG | + | chr7_1:58955657-58955676 | None:intergenic | 50.0% | |
| TTCTTTGCCCGATCTAGTGG+TGG | - | chr7_1:58956213-58956232 | Msa1026780:intron | 50.0% | |
| AATTTCAGCGCTGTGTGGTG+CGG | - | chr7_1:58956747-58956766 | Msa1026780:intron | 50.0% | |
| TGCAGGACTTCAGCACTTCA+TGG | - | chr7_1:58957077-58957096 | Msa1026780:intron | 50.0% | |
| GCAGGACTTCAGCACTTCAT+GGG | - | chr7_1:58957078-58957097 | Msa1026780:intron | 50.0% | |
| ! | CTTCTCAAGCTCTGGCTTGT+TGG | + | chr7_1:58957170-58957189 | None:intergenic | 50.0% |
| CGCGACTTGTGAGGGAAAAA+AGG | + | chr7_1:58957270-58957289 | None:intergenic | 50.0% | |
| TGCACTCCCCTTGAATATGG+TGG | - | chr7_1:58957548-58957567 | Msa1026780:five_prime_UTR | 50.0% | |
| ! | TTTGCCGCGCCGTCTTTTTG+TGG | - | chr7_1:58954784-58954803 | Msa1026780:intron | 55.0% |
| ATTTCAGCGCTGTGTGGTGC+GGG | - | chr7_1:58956748-58956767 | Msa1026780:intron | 55.0% | |
| GCACACGGATACCCCGACAA+AGG | + | chr7_1:58953720-58953739 | None:intergenic | 60.0% | |
| GAGGAGGTTTAGGGGTGAGG+GGG | + | chr7_1:58955210-58955229 | None:intergenic | 60.0% | |
| GGAGGAGGTTTAGGGGTGAG+GGG | + | chr7_1:58955211-58955230 | None:intergenic | 60.0% | |
| GGGAGGAGGTTTAGGGGTGA+GGG | + | chr7_1:58955212-58955231 | None:intergenic | 60.0% | |
| !! | GGAGTTTGCTGCCGGGAATG+TGG | - | chr7_1:58955622-58955641 | Msa1026780:intron | 60.0% |
| GGGGAGGAGGTTTAGGGGTG+AGG | + | chr7_1:58955213-58955232 | None:intergenic | 65.0% | |
| TGTGTGGTGCGGGCCTTGCA+AGG | - | chr7_1:58956758-58956777 | Msa1026780:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 58952977 | 58957574 | 58952977 | ID=Msa1026780;Name=Msa1026780 |
| chr7_1 | mRNA | 58952977 | 58957574 | 58952977 | ID=Msa1026780-mRNA-1;Parent=Msa1026780;Name=Msa1026780-mRNA-1;_AED=0.16;_eAED=0.16;_QI=343|0.8|0.83|1|0.8|0.66|6|340|163 |
| chr7_1 | exon | 58952977 | 58953469 | 58952977 | ID=Msa1026780-mRNA-1:exon:11851;Parent=Msa1026780-mRNA-1 |
| chr7_1 | exon | 58953691 | 58953813 | 58953691 | ID=Msa1026780-mRNA-1:exon:11850;Parent=Msa1026780-mRNA-1 |
| chr7_1 | exon | 58954842 | 58954964 | 58954842 | ID=Msa1026780-mRNA-1:exon:11849;Parent=Msa1026780-mRNA-1 |
| chr7_1 | exon | 58955063 | 58955134 | 58955063 | ID=Msa1026780-mRNA-1:exon:11848;Parent=Msa1026780-mRNA-1 |
| chr7_1 | exon | 58955983 | 58956086 | 58955983 | ID=Msa1026780-mRNA-1:exon:11847;Parent=Msa1026780-mRNA-1 |
| chr7_1 | exon | 58957315 | 58957574 | 58957315 | ID=Msa1026780-mRNA-1:exon:11846;Parent=Msa1026780-mRNA-1 |
| chr7_1 | five_prime_UTR | 58957315 | 58957574 | 58957315 | ID=Msa1026780-mRNA-1:five_prime_utr;Parent=Msa1026780-mRNA-1 |
| chr7_1 | five_prime_UTR | 58956004 | 58956086 | 58956004 | ID=Msa1026780-mRNA-1:five_prime_utr;Parent=Msa1026780-mRNA-1 |
| chr7_1 | CDS | 58955983 | 58956003 | 58955983 | ID=Msa1026780-mRNA-1:cds;Parent=Msa1026780-mRNA-1 |
| chr7_1 | CDS | 58955063 | 58955134 | 58955063 | ID=Msa1026780-mRNA-1:cds;Parent=Msa1026780-mRNA-1 |
| chr7_1 | CDS | 58954842 | 58954964 | 58954842 | ID=Msa1026780-mRNA-1:cds;Parent=Msa1026780-mRNA-1 |
| chr7_1 | CDS | 58953691 | 58953813 | 58953691 | ID=Msa1026780-mRNA-1:cds;Parent=Msa1026780-mRNA-1 |
| chr7_1 | CDS | 58953317 | 58953469 | 58953317 | ID=Msa1026780-mRNA-1:cds;Parent=Msa1026780-mRNA-1 |
| chr7_1 | three_prime_UTR | 58952977 | 58953316 | 58952977 | ID=Msa1026780-mRNA-1:three_prime_utr;Parent=Msa1026780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
