Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1027940 | XP_003623906.3 | 72.574 | 237 | 15 | 3 | 1 | 206 | 86 | 303 | 8.01e-106 | 339 |
| Msa1027940 | XP_003623906.3 | 91.275 | 447 | 38 | 1 | 187 | 632 | 36 | 482 | 0.0 | 856 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1027940 | sp|Q8T045|RUMI_DROME | 24.719 | 356 | 235 | 8 | 247 | 584 | 54 | 394 | 7.12e-24 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1027940 | Q2HRE8 | 72.574 | 237 | 15 | 3 | 1 | 206 | 1 | 218 | 2.01e-106 | 337 |
| Msa1027940 | Q2HRE8 | 94.710 | 397 | 21 | 0 | 236 | 632 | 1 | 397 | 0.0 | 794 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0707250 | Msa1027940 | 0.803509 | 3.369495e-49 | -8.615850e-47 |
| Msa0171540 | Msa1027940 | 0.808261 | 3.378791e-50 | -8.615850e-47 |
| Msa1027940 | Msa1066580 | 0.801605 | 8.323291e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1027940 | MtrunA17_Chr7g0247251 | 94.710 | 397 | 21 | 0 | 236 | 632 | 1 | 397 | 0.0 | 794 |
| Msa1027940 | MtrunA17_Chr7g0247251 | 72.574 | 237 | 15 | 3 | 1 | 206 | 1 | 218 | 3.87e-110 | 337 |
| Msa1027940 | MtrunA17_Chr7g0247261 | 85.749 | 414 | 58 | 1 | 219 | 632 | 32 | 444 | 0.0 | 756 |
| Msa1027940 | MtrunA17_Chr7g0247261 | 66.525 | 236 | 28 | 4 | 2 | 206 | 50 | 265 | 1.30e-96 | 303 |
| Msa1027940 | MtrunA17_Chr8g0349241 | 63.171 | 410 | 147 | 2 | 222 | 631 | 63 | 468 | 0.0 | 578 |
| Msa1027940 | MtrunA17_Chr8g0349241 | 50.000 | 224 | 60 | 4 | 14 | 206 | 88 | 290 | 5.54e-68 | 229 |
| Msa1027940 | MtrunA17_Chr8g0349361 | 52.955 | 440 | 197 | 5 | 195 | 631 | 49 | 481 | 2.81e-171 | 498 |
| Msa1027940 | MtrunA17_Chr8g0349361 | 42.979 | 235 | 76 | 6 | 2 | 204 | 93 | 301 | 7.19e-54 | 192 |
| Msa1027940 | MtrunA17_Chr6g0471441 | 53.545 | 409 | 187 | 1 | 223 | 631 | 69 | 474 | 5.82e-170 | 494 |
| Msa1027940 | MtrunA17_Chr6g0471441 | 42.553 | 235 | 82 | 4 | 1 | 204 | 82 | 294 | 5.89e-54 | 192 |
| Msa1027940 | MtrunA17_Chr8g0349371 | 55.314 | 414 | 174 | 7 | 222 | 631 | 58 | 464 | 1.21e-165 | 483 |
| Msa1027940 | MtrunA17_Chr8g0349371 | 46.226 | 212 | 63 | 4 | 24 | 204 | 91 | 282 | 3.69e-54 | 192 |
| Msa1027940 | MtrunA17_Chr5g0397701 | 53.071 | 407 | 170 | 5 | 228 | 631 | 83 | 471 | 5.56e-160 | 468 |
| Msa1027940 | MtrunA17_Chr5g0397701 | 38.819 | 237 | 77 | 5 | 2 | 205 | 90 | 291 | 5.48e-47 | 173 |
| Msa1027940 | MtrunA17_Chr3g0104841 | 44.414 | 367 | 195 | 5 | 262 | 627 | 105 | 463 | 2.55e-111 | 342 |
| Msa1027940 | MtrunA17_Chr3g0104841 | 33.014 | 209 | 83 | 6 | 27 | 203 | 105 | 288 | 2.69e-26 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1027940 | AT5G23850.1 | 53.333 | 420 | 194 | 2 | 214 | 631 | 88 | 507 | 1.68e-173 | 504 |
| Msa1027940 | AT5G23850.1 | 41.949 | 236 | 86 | 4 | 2 | 205 | 112 | 328 | 1.01e-55 | 198 |
| Msa1027940 | AT3G48980.1 | 51.300 | 423 | 201 | 2 | 214 | 631 | 82 | 504 | 6.12e-169 | 493 |
| Msa1027940 | AT3G48980.1 | 40.928 | 237 | 87 | 4 | 2 | 204 | 107 | 324 | 2.36e-53 | 191 |
| Msa1027940 | AT3G48980.2 | 51.300 | 423 | 201 | 2 | 214 | 631 | 88 | 510 | 6.79e-169 | 493 |
| Msa1027940 | AT3G48980.2 | 40.928 | 237 | 87 | 4 | 2 | 204 | 113 | 330 | 2.36e-53 | 192 |
| Msa1027940 | AT2G45830.4 | 55.882 | 374 | 165 | 0 | 258 | 631 | 114 | 487 | 1.73e-163 | 478 |
| Msa1027940 | AT2G45830.4 | 45.540 | 213 | 66 | 3 | 23 | 204 | 114 | 307 | 1.69e-53 | 191 |
| Msa1027940 | AT2G45830.1 | 55.882 | 374 | 165 | 0 | 258 | 631 | 114 | 487 | 1.73e-163 | 478 |
| Msa1027940 | AT2G45830.1 | 45.540 | 213 | 66 | 3 | 23 | 204 | 114 | 307 | 1.69e-53 | 191 |
| Msa1027940 | AT3G61270.1 | 56.000 | 375 | 164 | 1 | 257 | 631 | 91 | 464 | 7.54e-163 | 476 |
| Msa1027940 | AT3G61270.1 | 43.458 | 214 | 70 | 4 | 22 | 204 | 91 | 284 | 3.69e-49 | 179 |
| Msa1027940 | AT3G61280.1 | 52.153 | 418 | 189 | 5 | 220 | 631 | 91 | 503 | 3.21e-155 | 457 |
| Msa1027940 | AT3G61280.1 | 43.256 | 215 | 70 | 4 | 23 | 204 | 126 | 321 | 1.86e-46 | 172 |
| Msa1027940 | AT3G61290.1 | 53.826 | 379 | 170 | 2 | 258 | 631 | 39 | 417 | 1.71e-150 | 442 |
| Msa1027940 | AT3G61290.1 | 41.204 | 216 | 74 | 4 | 23 | 204 | 39 | 235 | 4.19e-44 | 164 |
| Msa1027940 | AT2G45830.3 | 54.913 | 346 | 156 | 0 | 286 | 631 | 1 | 346 | 2.71e-148 | 434 |
| Msa1027940 | AT2G45830.3 | 49.673 | 153 | 58 | 1 | 52 | 204 | 33 | 166 | 4.06e-44 | 162 |
| Msa1027940 | AT2G45830.6 | 54.913 | 346 | 156 | 0 | 286 | 631 | 1 | 346 | 2.71e-148 | 434 |
| Msa1027940 | AT2G45830.6 | 49.673 | 153 | 58 | 1 | 52 | 204 | 33 | 166 | 4.06e-44 | 162 |
| Msa1027940 | AT2G45830.2 | 54.913 | 346 | 156 | 0 | 286 | 631 | 1 | 346 | 2.71e-148 | 434 |
| Msa1027940 | AT2G45830.2 | 49.673 | 153 | 58 | 1 | 52 | 204 | 33 | 166 | 4.06e-44 | 162 |
| Msa1027940 | AT2G45830.5 | 54.913 | 346 | 156 | 0 | 286 | 631 | 1 | 346 | 2.71e-148 | 434 |
| Msa1027940 | AT2G45830.5 | 49.673 | 153 | 58 | 1 | 52 | 204 | 33 | 166 | 4.06e-44 | 162 |
| Msa1027940 | AT2G45840.1 | 49.318 | 440 | 199 | 7 | 202 | 631 | 62 | 487 | 2.08e-146 | 435 |
| Msa1027940 | AT2G45840.1 | 38.938 | 226 | 79 | 5 | 2 | 192 | 98 | 299 | 1.08e-38 | 150 |
| Msa1027940 | AT3G61270.2 | 54.624 | 346 | 156 | 1 | 286 | 631 | 1 | 345 | 3.29e-146 | 429 |
| Msa1027940 | AT3G61270.2 | 43.258 | 178 | 75 | 5 | 31 | 204 | 10 | 165 | 7.89e-39 | 147 |
| Msa1027940 | AT1G63420.1 | 49.392 | 411 | 185 | 5 | 233 | 631 | 148 | 547 | 2.31e-142 | 426 |
| Msa1027940 | AT1G63420.1 | 40.000 | 225 | 75 | 6 | 18 | 204 | 160 | 362 | 1.67e-37 | 147 |
| Msa1027940 | AT1G07220.1 | 47.253 | 364 | 183 | 5 | 263 | 625 | 115 | 470 | 1.29e-118 | 363 |
| Msa1027940 | AT1G07220.1 | 34.615 | 208 | 79 | 7 | 28 | 203 | 115 | 297 | 3.40e-30 | 125 |
| Msa1027940 | AT1G63420.2 | 50.779 | 321 | 140 | 4 | 233 | 546 | 148 | 457 | 2.92e-108 | 335 |
| Msa1027940 | AT1G63420.2 | 40.000 | 225 | 75 | 6 | 18 | 204 | 160 | 362 | 6.69e-38 | 147 |
| Msa1027940 | AT3G61280.2 | 50.575 | 261 | 120 | 4 | 220 | 476 | 91 | 346 | 1.09e-85 | 273 |
| Msa1027940 | AT3G61280.2 | 42.791 | 215 | 71 | 3 | 23 | 204 | 126 | 321 | 1.75e-47 | 171 |
Find 130 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACACTAAACTGCTTTAA+TGG | 0.161781 | 7_1:-60454303 | Msa1027940:CDS |
| TCTTTCCTGATTGGTCCTTT+TGG | 0.204528 | 7_1:-60455205 | Msa1027940:CDS |
| TCTTTCCTGATTGGTCCTTT+TGG | 0.214112 | 7_1:-60453843 | Msa1027940:CDS |
| TGGTATATGGAGGGAGTTTA+TGG | 0.224495 | 7_1:-60452080 | Msa1027940:CDS |
| TTGATATTGTCTTTCCTGAT+TGG | 0.255564 | 7_1:-60453852 | Msa1027940:CDS |
| TTGATATTGTCTTTCCTGAT+TGG | 0.255564 | 7_1:-60455214 | Msa1027940:CDS |
| AGAGAACGTAAATATGAAAT+TGG | 0.324164 | 7_1:-60452218 | Msa1027940:CDS |
| TAGATGGATTCATGAAGATT+TGG | 0.338625 | 7_1:-60454181 | Msa1027940:CDS |
| TAGATGGATTCATGAAGATT+TGG | 0.338625 | 7_1:-60455542 | Msa1027940:CDS |
| CTTGTTTGTCATCATAAATA+AGG | 0.350706 | 7_1:+60452004 | None:intergenic |
| TTGTACCTTATAAGCACTTC+TGG | 0.355210 | 7_1:-60452821 | Msa1027940:CDS |
| CATGACAAGAACATGCAAAA+AGG | 0.365483 | 7_1:-60454277 | Msa1027940:CDS |
| CATGACAAGAACATGCAAAA+AGG | 0.365483 | 7_1:-60455638 | Msa1027940:CDS |
| AATATATGGATTACCTTCTC+TGG | 0.368962 | 7_1:+60452735 | None:intergenic |
| ATGGGCCAGAAGTGCTTATA+AGG | 0.373253 | 7_1:+60452816 | None:intergenic |
| TCTTGATGAAATGTTTGAAT+TGG | 0.373638 | 7_1:+60454246 | None:intergenic |
| TCTTGATGAAATGTTTGAAT+TGG | 0.373638 | 7_1:+60455607 | None:intergenic |
| CATGTCCAATGGGTGGTATA+TGG | 0.378007 | 7_1:-60452093 | Msa1027940:CDS |
| GTAAAGAAATCATAGTATCT+TGG | 0.384241 | 7_1:+60452852 | None:intergenic |
| TATTAAGTATGCTGTAGATT+GGG | 0.389665 | 7_1:-60452769 | Msa1027940:CDS |
| CCCTGGGAGAGTACCAGATT+TGG | 0.390141 | 7_1:-60453986 | Msa1027940:CDS |
| CCCTGGGAGAGTACCAGATT+TGG | 0.390141 | 7_1:-60455348 | Msa1027940:CDS |
| CATGTCCAGAGCACTTTAGA+TGG | 0.391758 | 7_1:-60454197 | Msa1027940:CDS |
| CATGTCCAGAGCACTTTAGA+TGG | 0.391758 | 7_1:-60455558 | Msa1027940:CDS |
| CAAGGGATTTGTTCACTGTA+TGG | 0.396476 | 7_1:-60454035 | Msa1027940:CDS |
| ACAAGGATTTGTTCACTGTA+TGG | 0.407473 | 7_1:-60455397 | Msa1027940:intron |
| TTCATGAAGATTTGGAATCA+TGG | 0.416024 | 7_1:-60454173 | Msa1027940:CDS |
| TTCATGAAGATTTGGAATCA+TGG | 0.416024 | 7_1:-60455534 | Msa1027940:CDS |
| CTCAACTGCTCCTGCAGGTA+TGG | 0.438901 | 7_1:+60452135 | None:intergenic |
| TGAATTTGAAGGGCTGAGAC+TGG | 0.439727 | 7_1:-60453586 | Msa1027940:intron |
| TGAATTTGAAGGGCTGAGAC+TGG | 0.439727 | 7_1:-60454949 | Msa1027940:intron |
| CAAGGATTTGTTCACTGTAT+GGG | 0.440988 | 7_1:-60455396 | Msa1027940:intron |
| TACAGGAATCACAAGGGAAA+TGG | 0.447020 | 7_1:-60454145 | Msa1027940:CDS |
| TACAGGAATCACAAGGGAAA+TGG | 0.447020 | 7_1:-60455506 | Msa1027940:intron |
| TCCTTCAACACTTTCTCCCA+TGG | 0.447664 | 7_1:+60453556 | None:intergenic |
| TCCTTCAACACTTTCTCCCA+TGG | 0.447664 | 7_1:+60454919 | None:intergenic |
| GCAGAAGAGATTGGCAGAGA+AGG | 0.454599 | 7_1:-60452256 | Msa1027940:CDS |
| ATGTCACAGACCAGCATGAT+TGG | 0.455169 | 7_1:-60453426 | Msa1027940:CDS |
| ATGTCACAGACCAGCATGAT+TGG | 0.455169 | 7_1:-60454789 | Msa1027940:CDS |
| GGAGTTTATGGTTGAGTCCA+TGG | 0.456395 | 7_1:-60452068 | Msa1027940:CDS |
| TCAAACAATAGCTCCAAATC+TGG | 0.457845 | 7_1:+60453973 | None:intergenic |
| TCAAACAATAGCTCCAAATC+TGG | 0.457845 | 7_1:+60455335 | None:intergenic |
| ATATTAAGTATGCTGTAGAT+TGG | 0.458269 | 7_1:-60452770 | Msa1027940:CDS |
| AGAAGATCAAATGGAAGGAT+AGG | 0.467492 | 7_1:-60453516 | Msa1027940:CDS |
| AGAAGATCAAATGGAAGGAT+AGG | 0.467492 | 7_1:-60454879 | Msa1027940:CDS |
| AAAGCAATAAGAAGATCAAA+TGG | 0.468954 | 7_1:-60453525 | Msa1027940:CDS |
| AAAGCAATAAGAAGATCAAA+TGG | 0.468954 | 7_1:-60454888 | Msa1027940:CDS |
| AAGGGATTTGTTCACTGTAT+GGG | 0.470688 | 7_1:-60454034 | Msa1027940:CDS |
| TCCAAATCTGGTACTCTCCC+AGG | 0.476324 | 7_1:+60453985 | None:intergenic |
| TCCAAATCTGGTACTCTCCC+AGG | 0.476324 | 7_1:+60455347 | None:intergenic |
| TGAATCCATCTAAAGTGCTC+TGG | 0.477066 | 7_1:+60454192 | None:intergenic |
| TGAATCCATCTAAAGTGCTC+TGG | 0.477066 | 7_1:+60455553 | None:intergenic |
| TGAGGTTTGTTCTGAAAACT+TGG | 0.487506 | 7_1:-60452116 | Msa1027940:CDS |
| GCCTAAGCTTATACCTTCGT+GGG | 0.487626 | 7_1:+60453455 | None:intergenic |
| GCCTAAGCTTATACCTTCGT+GGG | 0.487626 | 7_1:+60454818 | None:intergenic |
| ATTCAACAGGCAGAAGAGAT+TGG | 0.489780 | 7_1:-60452265 | Msa1027940:intron |
| GATGACAAACAAGGTATGAA+AGG | 0.492956 | 7_1:-60451994 | Msa1027940:three_prime_UTR |
| ACTGCTCCTGCAGGTATGGT+TGG | 0.500576 | 7_1:+60452139 | None:intergenic |
| CCAAAATTACAATCATCAAA+AGG | 0.504220 | 7_1:-60454338 | Msa1027940:CDS |
| TGCCTAAGCTTATACCTTCG+TGG | 0.507114 | 7_1:+60453454 | None:intergenic |
| TGCCTAAGCTTATACCTTCG+TGG | 0.507114 | 7_1:+60454817 | None:intergenic |
| CCAACCCAAAAGGACCAATC+AGG | 0.511304 | 7_1:+60455200 | None:intergenic |
| ACCATGGGAGAAAGTGTTGA+AGG | 0.516971 | 7_1:-60453557 | Msa1027940:CDS |
| ACCATGGGAGAAAGTGTTGA+AGG | 0.516971 | 7_1:-60454920 | Msa1027940:CDS |
| ATGACAAACAAGGTATGAAA+GGG | 0.517583 | 7_1:-60451993 | Msa1027940:three_prime_UTR |
| CCGCTCATTGTTTACAACAA+AGG | 0.518874 | 7_1:+60451960 | None:intergenic |
| CATGTTGATGTAGATGATGA+TGG | 0.525148 | 7_1:+60454216 | None:intergenic |
| CATGTTGATGTAGATGATGA+TGG | 0.525148 | 7_1:+60455577 | None:intergenic |
| GAAGACTTACCAACCCCAAA+AGG | 0.530442 | 7_1:+60453828 | None:intergenic |
| TTGGAATCATGGAAAAGTAC+AGG | 0.531675 | 7_1:-60454162 | Msa1027940:CDS |
| TTGGAATCATGGAAAAGTAC+AGG | 0.531675 | 7_1:-60455523 | Msa1027940:CDS |
| CAACCCCAAAAGGACCAATC+AGG | 0.531822 | 7_1:+60453838 | None:intergenic |
| CAGAAGAGATTGGCAGAGAA+GGG | 0.532147 | 7_1:-60452255 | Msa1027940:CDS |
| TTTATGTGGAAGGGAGATCA+TGG | 0.533897 | 7_1:-60452929 | Msa1027940:CDS |
| TGAAAACTTGGCATGTCCAA+TGG | 0.534236 | 7_1:-60452104 | Msa1027940:CDS |
| ACAAGGGAAATGGTGGAAAG+TGG | 0.538257 | 7_1:-60454135 | Msa1027940:CDS |
| AAGGATTTGTTCACTGTATG+GGG | 0.540539 | 7_1:-60455395 | Msa1027940:CDS |
| ATGAAGGTACAAGATTTATG+TGG | 0.542099 | 7_1:-60452943 | Msa1027940:intron |
| TGCAGATTCATTTCAAACAA+GGG | 0.542697 | 7_1:-60454052 | Msa1027940:CDS |
| TTGGAGCTATTGTTTGAGAC+TGG | 0.545111 | 7_1:-60453967 | Msa1027940:CDS |
| TTGGAGCTATTGTTTGAGAC+TGG | 0.545111 | 7_1:-60455329 | Msa1027940:CDS |
| AGAAGACTTACCAACCCAAA+AGG | 0.546899 | 7_1:+60455190 | None:intergenic |
| AGGGATTTGTTCACTGTATG+GGG | 0.551188 | 7_1:-60454033 | Msa1027940:CDS |
| CATACCTGCAGGAGCAGTTG+AGG | 0.561046 | 7_1:-60452134 | Msa1027940:CDS |
| CCCCACGAAGGTATAAGCTT+AGG | 0.565131 | 7_1:-60453456 | Msa1027940:CDS |
| CCCCACGAAGGTATAAGCTT+AGG | 0.565131 | 7_1:-60454819 | Msa1027940:CDS |
| GAAAACTTGGCATGTCCAAT+GGG | 0.566662 | 7_1:-60452103 | Msa1027940:CDS |
| TACGAGCATTCCAATCATGC+TGG | 0.572071 | 7_1:+60453416 | None:intergenic |
| TACGAGCATTCCAATCATGC+TGG | 0.572071 | 7_1:+60454779 | None:intergenic |
| TCCCTCCATATACCACCCAT+TGG | 0.572568 | 7_1:+60452088 | None:intergenic |
| CAAACCTCAACTGCTCCTGC+AGG | 0.574684 | 7_1:+60452130 | None:intergenic |
| ATGCAGATTCATTTCAAACA+AGG | 0.575080 | 7_1:-60454053 | Msa1027940:CDS |
| TAAGGAGAAAACATAGTACA+TGG | 0.576693 | 7_1:+60452022 | None:intergenic |
| GTCCAATGGGTGGTATATGG+AGG | 0.577174 | 7_1:-60452090 | Msa1027940:CDS |
| GACTGGTGATATAACTGTGT+TGG | 0.581427 | 7_1:-60453950 | Msa1027940:CDS |
| GACTGGTGATATAACTGTGT+TGG | 0.581427 | 7_1:-60455312 | Msa1027940:CDS |
| ATTAAGTATGCTGTAGATTG+GGG | 0.584448 | 7_1:-60452768 | Msa1027940:CDS |
| CTTATTTATGATGACAAACA+AGG | 0.589384 | 7_1:-60452003 | Msa1027940:exon |
| GGTACAAGATTTATGTGGAA+GGG | 0.589725 | 7_1:-60452938 | Msa1027940:CDS |
| AGGAATCACAAGGGAAATGG+TGG | 0.591779 | 7_1:-60454142 | Msa1027940:CDS |
| AGGTACAAGATTTATGTGGA+AGG | 0.598234 | 7_1:-60452939 | Msa1027940:CDS |
| TCCAATGGGTGGTATATGGA+GGG | 0.601512 | 7_1:-60452089 | Msa1027940:CDS |
| CAATAAGAAGATCAAATGGA+AGG | 0.601775 | 7_1:-60453521 | Msa1027940:CDS |
| CAATAAGAAGATCAAATGGA+AGG | 0.601775 | 7_1:-60454884 | Msa1027940:CDS |
| TTTGAACCAACCATACCTGC+AGG | 0.605137 | 7_1:-60452145 | Msa1027940:CDS |
| TGGAATAAGGAAATTGAACA+AGG | 0.606297 | 7_1:-60453293 | Msa1027940:CDS |
| GTATCTTGGCTTTATGAACA+AGG | 0.607470 | 7_1:+60452866 | None:intergenic |
| CCAAATCTGGTACTCTCCCA+GGG | 0.614217 | 7_1:+60453986 | None:intergenic |
| CCAAATCTGGTACTCTCCCA+GGG | 0.614217 | 7_1:+60455348 | None:intergenic |
| CTGAGACTGGAATAAAACCA+TGG | 0.614880 | 7_1:-60453573 | Msa1027940:CDS |
| CTGAGACTGGAATAAAACCA+TGG | 0.614880 | 7_1:-60454936 | Msa1027940:CDS |
| GAATGCTCGTATATATTCAG+TGG | 0.620382 | 7_1:-60453404 | Msa1027940:intron |
| GAATGCTCGTATATATTCAG+TGG | 0.620382 | 7_1:-60454767 | Msa1027940:intron |
| GGGCAATACACATCCAGAGA+AGG | 0.623497 | 7_1:-60452748 | Msa1027940:intron |
| CCTTTGTTGTAAACAATGAG+CGG | 0.626203 | 7_1:-60451960 | None:intergenic |
| ATCACTTGGTGACTTAACCA+TGG | 0.629342 | 7_1:+60452051 | None:intergenic |
| GGAAAAGTACAGGAATCACA+AGG | 0.633534 | 7_1:-60454152 | Msa1027940:CDS |
| GGAAAAGTACAGGAATCACA+AGG | 0.633534 | 7_1:-60455513 | Msa1027940:CDS |
| TGAGACTGGAATAAAACCAT+GGG | 0.644894 | 7_1:-60453572 | Msa1027940:CDS |
| TGAGACTGGAATAAAACCAT+GGG | 0.644894 | 7_1:-60454935 | Msa1027940:CDS |
| GTACATGGAAGTGTATCACT+TGG | 0.650386 | 7_1:+60452037 | None:intergenic |
| GGAATAAGGAAATTGAACAA+GGG | 0.681129 | 7_1:-60453292 | Msa1027940:CDS |
| TAGAAGATCAATGTACACAC+AGG | 0.688104 | 7_1:-60453253 | Msa1027940:intron |
| AACTTGGCATGTCCAATGGG+TGG | 0.715273 | 7_1:-60452100 | Msa1027940:CDS |
| GAAAAGTACAGGAATCACAA+GGG | 0.726231 | 7_1:-60454151 | Msa1027940:CDS |
| GAAAAGTACAGGAATCACAA+GGG | 0.726231 | 7_1:-60455512 | Msa1027940:CDS |
| ACACACATGTGTCCCCACGA+AGG | 0.726715 | 7_1:-60453468 | Msa1027940:CDS |
| ACACACATGTGTCCCCACGA+AGG | 0.726715 | 7_1:-60454831 | Msa1027940:CDS |
| CCTAAGCTTATACCTTCGTG+GGG | 0.734199 | 7_1:+60453456 | None:intergenic |
| CCTAAGCTTATACCTTCGTG+GGG | 0.734199 | 7_1:+60454819 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATAACTTTATGTA+TGG | + | chr7_1:60452990-60453009 | None:intergenic | 10.0% |
| !!! | ATAAAAAGGATTTAATATTT+TGG | - | chr7_1:60453031-60453050 | Msa1027940:intron | 10.0% |
| !!! | TAAAAAGGATTTAATATTTT+GGG | - | chr7_1:60453032-60453051 | Msa1027940:intron | 10.0% |
| !!! | ATGTCAATATAATATATTTT+TGG | - | chr7_1:60455071-60455090 | Msa1027940:intron | 10.0% |
| !!! | AAAAAGGATTTAATATTTTG+GGG | - | chr7_1:60453033-60453052 | Msa1027940:intron | 15.0% |
| !!! | TAATATATTGGATTTTGATT+TGG | + | chr7_1:60454583-60454602 | None:intergenic | 15.0% |
| !! | ATAATTATGAAGCAAATTAA+TGG | + | chr7_1:60455279-60455298 | None:intergenic | 15.0% |
| !! | CTTAGAATTGTGATTAAAAA+AGG | - | chr7_1:60452142-60452161 | Msa1027940:CDS | 20.0% |
| !! | TTGGATAAAAAAAGATTTGA+AGG | - | chr7_1:60452306-60452325 | Msa1027940:intron | 20.0% |
| !! | AAAAACACGTTGAAATATTT+CGG | + | chr7_1:60452504-60452523 | None:intergenic | 20.0% |
| !!! | TTGTTGTATTTTGAATTTGA+AGG | - | chr7_1:60452639-60452658 | Msa1027940:intron | 20.0% |
| !!! | TGTTGTATTTTGAATTTGAA+GGG | - | chr7_1:60452640-60452659 | Msa1027940:intron | 20.0% |
| !!! | GTCAAATCAAAATTTTACAA+CGG | + | chr7_1:60453111-60453130 | None:intergenic | 20.0% |
| !!! | TTTAACTTATAAAGTAGACT+AGG | + | chr7_1:60453156-60453175 | None:intergenic | 20.0% |
| !! | CTTAGAATTGTGATTAAAAA+AGG | - | chr7_1:60452142-60452161 | Msa1027940:CDS | 20.0% |
| !! | TTGGATAAAAAAAGATTTGA+AGG | - | chr7_1:60452306-60452325 | Msa1027940:intron | 20.0% |
| !! | AAAAACACGTTGAAATATTT+CGG | + | chr7_1:60452504-60452523 | None:intergenic | 20.0% |
| !!! | TTGTTGTATTTTGAATTTGA+AGG | - | chr7_1:60452639-60452658 | Msa1027940:intron | 20.0% |
| !!! | TGTTGTATTTTGAATTTGAA+GGG | - | chr7_1:60452640-60452659 | Msa1027940:intron | 20.0% |
| !!! | ATTTTAACTTGTTTTGTTAG+CGG | + | chr7_1:60454519-60454538 | None:intergenic | 20.0% |
| !! | AAATCCAATATATTACCTTT+AGG | - | chr7_1:60454588-60454607 | Msa1027940:intron | 20.0% |
| !! | AGAAAATATCATAGTATTAG+GGG | + | chr7_1:60454894-60454913 | None:intergenic | 20.0% |
| !! | GAGAAAATATCATAGTATTA+GGG | + | chr7_1:60454895-60454914 | None:intergenic | 20.0% |
| !! | TGAGAAAATATCATAGTATT+AGG | + | chr7_1:60454896-60454915 | None:intergenic | 20.0% |
| !!! | ATTGATCCTTTAAGTTATTT+TGG | - | chr7_1:60455137-60455156 | Msa1027940:intron | 20.0% |
| !! | TCATAATTATTGTTTAATCG+TGG | - | chr7_1:60455289-60455308 | Msa1027940:CDS | 20.0% |
| !!! | TTTTTTATGCATAATTCAAC+AGG | - | chr7_1:60455321-60455340 | Msa1027940:CDS | 20.0% |
| ! | TCTTGATGAAATGTTTGAAT+TGG | + | chr7_1:60451995-60452014 | None:intergenic | 25.0% |
| ! | TGTCCACAATAACTAAAAAT+AGG | + | chr7_1:60452354-60452373 | None:intergenic | 25.0% |
| !! | GAAATATTTCAACGTGTTTT+TGG | - | chr7_1:60452503-60452522 | Msa1027940:intron | 25.0% |
| ! | AAAGCAATAAGAAGATCAAA+TGG | - | chr7_1:60452711-60452730 | Msa1027940:intron | 25.0% |
| !!! | TTGATGATTGTAATTTTGGA+AGG | + | chr7_1:60453260-60453279 | None:intergenic | 25.0% |
| !!! | CCTTTTGATGATTGTAATTT+TGG | + | chr7_1:60453264-60453283 | None:intergenic | 25.0% |
| ! | CCAAAATTACAATCATCAAA+AGG | - | chr7_1:60453261-60453280 | Msa1027940:CDS | 25.0% |
| ! | TCTTGATGAAATGTTTGAAT+TGG | + | chr7_1:60451995-60452014 | None:intergenic | 25.0% |
| ! | TGTCCACAATAACTAAAAAT+AGG | + | chr7_1:60452354-60452373 | None:intergenic | 25.0% |
| !! | GAAATATTTCAACGTGTTTT+TGG | - | chr7_1:60452503-60452522 | Msa1027940:intron | 25.0% |
| ! | AAAGCAATAAGAAGATCAAA+TGG | - | chr7_1:60452711-60452730 | Msa1027940:intron | 25.0% |
| !!! | ATATTGTTTGTTTTTAGCAC+TGG | - | chr7_1:60454286-60454305 | Msa1027940:CDS | 25.0% |
| !! | ATCTAAGATCAAAGATTAGA+CGG | - | chr7_1:60454483-60454502 | Msa1027940:intron | 25.0% |
| ! | CAAACCTAAAGGTAATATAT+TGG | + | chr7_1:60454595-60454614 | None:intergenic | 25.0% |
| ! | GTAAAGAAATCATAGTATCT+TGG | + | chr7_1:60454750-60454769 | None:intergenic | 25.0% |
| ! | ATATTAAGTATGCTGTAGAT+TGG | - | chr7_1:60454829-60454848 | Msa1027940:CDS | 25.0% |
| ! | TATTAAGTATGCTGTAGATT+GGG | - | chr7_1:60454830-60454849 | Msa1027940:CDS | 25.0% |
| ! | ACATATTAAGTGCAAAGAAA+TGG | + | chr7_1:60455016-60455035 | None:intergenic | 25.0% |
| !! | TTTTGTGTTAAAGATTCTAG+CGG | + | chr7_1:60455049-60455068 | None:intergenic | 25.0% |
| ! | GAAAACGTTTACAAACTTAA+AGG | + | chr7_1:60455229-60455248 | None:intergenic | 25.0% |
| ! | AGAGAACGTAAATATGAAAT+TGG | - | chr7_1:60455381-60455400 | Msa1027940:CDS | 25.0% |
| ! | CTTGTTTGTCATCATAAATA+AGG | + | chr7_1:60455598-60455617 | None:intergenic | 25.0% |
| ! | CTTATTTATGATGACAAACA+AGG | - | chr7_1:60455596-60455615 | Msa1027940:CDS | 25.0% |
| ! | TAGATGGATTCATGAAGATT+TGG | - | chr7_1:60452057-60452076 | Msa1027940:CDS | 30.0% |
| ! | TTCATGAAGATTTGGAATCA+TGG | - | chr7_1:60452065-60452084 | Msa1027940:CDS | 30.0% |
| ATGCAGATTCATTTCAAACA+AGG | - | chr7_1:60452185-60452204 | Msa1027940:CDS | 30.0% | |
| CAATAACTAAAAATAGGTGG+TGG | + | chr7_1:60452348-60452367 | None:intergenic | 30.0% | |
| CCACAATAACTAAAAATAGG+TGG | + | chr7_1:60452351-60452370 | None:intergenic | 30.0% | |
| !!! | CCACCTATTTTTAGTTATTG+TGG | - | chr7_1:60452348-60452367 | Msa1027940:intron | 30.0% |
| TTGATATTGTCTTTCCTGAT+TGG | - | chr7_1:60452385-60452404 | Msa1027940:intron | 30.0% | |
| AAGTCTTCTGCATTCAATTT+AGG | - | chr7_1:60452423-60452442 | Msa1027940:intron | 30.0% | |
| !!! | GTCATTACTTTTTTCACCTT+AGG | - | chr7_1:60452445-60452464 | Msa1027940:intron | 30.0% |
| !!! | ATTACTTTTTTCACCTTAGG+AGG | - | chr7_1:60452448-60452467 | Msa1027940:intron | 30.0% |
| !!! | ATATTTCAACGTGTTTTTGG+AGG | - | chr7_1:60452506-60452525 | Msa1027940:intron | 30.0% |
| CAATAAGAAGATCAAATGGA+AGG | - | chr7_1:60452715-60452734 | Msa1027940:intron | 30.0% | |
| ! | ATAGGATACCTTATGCTTTT+TGG | - | chr7_1:60452738-60452757 | Msa1027940:intron | 30.0% |
| !! | ATACCTTATGCTTTTTGGAA+AGG | - | chr7_1:60452743-60452762 | Msa1027940:intron | 30.0% |
| ! | TTTCCTTTCCAAAAAGCATA+AGG | + | chr7_1:60452749-60452768 | None:intergenic | 30.0% |
| ! | TTGGGGATAAATCTTTTATG+TGG | - | chr7_1:60453050-60453069 | Msa1027940:intron | 30.0% |
| AGTAGTAGTACATTGTAAAG+GGG | + | chr7_1:60453133-60453152 | None:intergenic | 30.0% | |
| GAGTAGTAGTACATTGTAAA+GGG | + | chr7_1:60453134-60453153 | None:intergenic | 30.0% | |
| TTCACACTAAACTGCTTTAA+TGG | - | chr7_1:60453296-60453315 | Msa1027940:CDS | 30.0% | |
| ! | TAGATGGATTCATGAAGATT+TGG | - | chr7_1:60452057-60452076 | Msa1027940:CDS | 30.0% |
| ! | TTCATGAAGATTTGGAATCA+TGG | - | chr7_1:60452065-60452084 | Msa1027940:CDS | 30.0% |
| ATGCAGATTCATTTCAAACA+AGG | - | chr7_1:60452185-60452204 | Msa1027940:CDS | 30.0% | |
| TGCAGATTCATTTCAAACAA+GGG | - | chr7_1:60452186-60452205 | Msa1027940:CDS | 30.0% | |
| CAATAACTAAAAATAGGTGG+TGG | + | chr7_1:60452348-60452367 | None:intergenic | 30.0% | |
| CCACAATAACTAAAAATAGG+TGG | + | chr7_1:60452351-60452370 | None:intergenic | 30.0% | |
| !!! | CCACCTATTTTTAGTTATTG+TGG | - | chr7_1:60452348-60452367 | Msa1027940:intron | 30.0% |
| TTGATATTGTCTTTCCTGAT+TGG | - | chr7_1:60452385-60452404 | Msa1027940:intron | 30.0% | |
| AAGTCTTCTGCATTCAATTT+AGG | - | chr7_1:60452423-60452442 | Msa1027940:intron | 30.0% | |
| !!! | GTCATTACTTTTTTCACCTT+AGG | - | chr7_1:60452445-60452464 | Msa1027940:intron | 30.0% |
| !!! | ATTACTTTTTTCACCTTAGG+AGG | - | chr7_1:60452448-60452467 | Msa1027940:intron | 30.0% |
| !!! | ATATTTCAACGTGTTTTTGG+AGG | - | chr7_1:60452506-60452525 | Msa1027940:intron | 30.0% |
| CAATAAGAAGATCAAATGGA+AGG | - | chr7_1:60452715-60452734 | Msa1027940:intron | 30.0% | |
| ! | ATAGGATACCTTATGCTTTT+TGG | - | chr7_1:60452738-60452757 | Msa1027940:intron | 30.0% |
| !! | ATACCTTATGCTTTTTGGAA+AGG | - | chr7_1:60452743-60452762 | Msa1027940:intron | 30.0% |
| ! | TTTCCTTTCCAAAAAGCATA+AGG | + | chr7_1:60452749-60452768 | None:intergenic | 30.0% |
| !!! | TTGTTTTTAGCACTGGAATA+AGG | - | chr7_1:60454293-60454312 | Msa1027940:CDS | 30.0% |
| TGGAATAAGGAAATTGAACA+AGG | - | chr7_1:60454306-60454325 | Msa1027940:CDS | 30.0% | |
| GGAATAAGGAAATTGAACAA+GGG | - | chr7_1:60454307-60454326 | Msa1027940:CDS | 30.0% | |
| ! | TCGACTGTTAATTTGAAATC+AGG | - | chr7_1:60454540-60454559 | Msa1027940:intron | 30.0% |
| ! | CGACTGTTAATTTGAAATCA+GGG | - | chr7_1:60454541-60454560 | Msa1027940:intron | 30.0% |
| AATTGCTACATTTCTTGTGT+TGG | - | chr7_1:60454627-60454646 | Msa1027940:intron | 30.0% | |
| !!! | CTTGTGTTGGTTTTTTATGA+AGG | - | chr7_1:60454640-60454659 | Msa1027940:intron | 30.0% |
| ! | ATGAAGGTACAAGATTTATG+TGG | - | chr7_1:60454656-60454675 | Msa1027940:intron | 30.0% |
| ATTAAGTATGCTGTAGATTG+GGG | - | chr7_1:60454831-60454850 | Msa1027940:CDS | 30.0% | |
| ! | AATATATGGATTACCTTCTC+TGG | + | chr7_1:60454867-60454886 | None:intergenic | 30.0% |
| AATATCATAGTATTAGGGGA+AGG | + | chr7_1:60454890-60454909 | None:intergenic | 30.0% | |
| AGTAAAGCTCAAATGATAGA+AGG | - | chr7_1:60454941-60454960 | Msa1027940:CDS | 30.0% | |
| ! | TTAGAAGTCCTTTAAGTTTG+AGG | - | chr7_1:60455104-60455123 | Msa1027940:CDS | 30.0% |
| GTGTGACCAAAATAACTTAA+AGG | + | chr7_1:60455146-60455165 | None:intergenic | 30.0% | |
| ATGGAAGTTTGGTTAACAAA+AGG | + | chr7_1:60455260-60455279 | None:intergenic | 30.0% | |
| GAAGCAAATTAATGGAAGTT+TGG | + | chr7_1:60455271-60455290 | None:intergenic | 30.0% | |
| TAAGGAGAAAACATAGTACA+TGG | + | chr7_1:60455580-60455599 | None:intergenic | 30.0% | |
| ATGACAAACAAGGTATGAAA+GGG | - | chr7_1:60455606-60455625 | Msa1027940:CDS | 30.0% | |
| CATGTTGATGTAGATGATGA+TGG | + | chr7_1:60452025-60452044 | None:intergenic | 35.0% | |
| ! | TTGGAATCATGGAAAAGTAC+AGG | - | chr7_1:60452076-60452095 | Msa1027940:CDS | 35.0% |
| ! | GAAAAGTACAGGAATCACAA+GGG | - | chr7_1:60452087-60452106 | Msa1027940:CDS | 35.0% |
| ! | ACAAGGATTTGTTCACTGTA+TGG | - | chr7_1:60452202-60452221 | Msa1027940:CDS | 35.0% |
| ! | CAAGGATTTGTTCACTGTAT+GGG | - | chr7_1:60452203-60452222 | Msa1027940:CDS | 35.0% |
| ! | AAGGATTTGTTCACTGTATG+GGG | - | chr7_1:60452204-60452223 | Msa1027940:CDS | 35.0% |
| ! | GGGGAATAGTACAACTTTTA+AGG | - | chr7_1:60452223-60452242 | Msa1027940:CDS | 35.0% |
| !!! | AACTTTTAAGGTTGTACCCT+GGG | - | chr7_1:60452235-60452254 | Msa1027940:CDS | 35.0% |
| TCAAACAATAGCTCCAAATC+TGG | + | chr7_1:60452267-60452286 | None:intergenic | 35.0% | |
| ! | TCGGAGTTTAGAATCTGAAT+AGG | + | chr7_1:60452485-60452504 | None:intergenic | 35.0% |
| !!! | GTGTTTTTGGAGGTTTTATG+AGG | - | chr7_1:60452516-60452535 | Msa1027940:intron | 35.0% |
| TGAGACTGGAATAAAACCAT+GGG | - | chr7_1:60452664-60452683 | Msa1027940:intron | 35.0% | |
| AGAAGATCAAATGGAAGGAT+AGG | - | chr7_1:60452720-60452739 | Msa1027940:intron | 35.0% | |
| GAATGCTCGTATATATTCAG+TGG | - | chr7_1:60452832-60452851 | Msa1027940:CDS | 35.0% | |
| GGAGTAGTAGTACATTGTAA+AGG | + | chr7_1:60453135-60453154 | None:intergenic | 35.0% | |
| CATGACAAGAACATGCAAAA+AGG | - | chr7_1:60453322-60453341 | Msa1027940:intron | 35.0% | |
| CATGTTGATGTAGATGATGA+TGG | + | chr7_1:60452025-60452044 | None:intergenic | 35.0% | |
| ! | TTGGAATCATGGAAAAGTAC+AGG | - | chr7_1:60452076-60452095 | Msa1027940:CDS | 35.0% |
| ! | GAAAAGTACAGGAATCACAA+GGG | - | chr7_1:60452087-60452106 | Msa1027940:CDS | 35.0% |
| ! | AAGGGATTTGTTCACTGTAT+GGG | - | chr7_1:60453565-60453584 | Msa1027940:CDS | 35.0% |
| ! | GGGGAATAGTACAACTTTTA+AGG | - | chr7_1:60452223-60452242 | Msa1027940:CDS | 35.0% |
| !!! | AACTTTTAAGGTTGTACCCT+GGG | - | chr7_1:60452235-60452254 | Msa1027940:CDS | 35.0% |
| TCAAACAATAGCTCCAAATC+TGG | + | chr7_1:60452267-60452286 | None:intergenic | 35.0% | |
| ! | TCGGAGTTTAGAATCTGAAT+AGG | + | chr7_1:60452485-60452504 | None:intergenic | 35.0% |
| !!! | GTGTTTTTGGAGGTTTTATG+AGG | - | chr7_1:60452516-60452535 | Msa1027940:intron | 35.0% |
| TGAGACTGGAATAAAACCAT+GGG | - | chr7_1:60452664-60452683 | Msa1027940:intron | 35.0% | |
| AGAAGATCAAATGGAAGGAT+AGG | - | chr7_1:60452720-60452739 | Msa1027940:intron | 35.0% | |
| GAATGCTCGTATATATTCAG+TGG | - | chr7_1:60452832-60452851 | Msa1027940:CDS | 35.0% | |
| TAGAAGATCAATGTACACAC+AGG | - | chr7_1:60454346-60454365 | Msa1027940:CDS | 35.0% | |
| AGGTACAAGATTTATGTGGA+AGG | - | chr7_1:60454660-60454679 | Msa1027940:intron | 35.0% | |
| GGTACAAGATTTATGTGGAA+GGG | - | chr7_1:60454661-60454680 | Msa1027940:intron | 35.0% | |
| !! | GTATCTTGGCTTTATGAACA+AGG | + | chr7_1:60454736-60454755 | None:intergenic | 35.0% |
| TTGTACCTTATAAGCACTTC+TGG | - | chr7_1:60454778-60454797 | Msa1027940:CDS | 35.0% | |
| !! | CACATGTTTTGCTTGTTGAT+GGG | + | chr7_1:60454804-60454823 | None:intergenic | 35.0% |
| !! | ACACATGTTTTGCTTGTTGA+TGG | + | chr7_1:60454805-60454824 | None:intergenic | 35.0% |
| GTATTAGGGGAAGGAATATA+TGG | + | chr7_1:60454881-60454900 | None:intergenic | 35.0% | |
| AAGCTCAAATGATAGAAGGT+CGG | - | chr7_1:60454945-60454964 | Msa1027940:intron | 35.0% | |
| GTTACGAACCTCAAACTTAA+AGG | + | chr7_1:60455115-60455134 | None:intergenic | 35.0% | |
| !! | TGAGGTTTGTTCTGAAAACT+TGG | - | chr7_1:60455483-60455502 | Msa1027940:intron | 35.0% |
| GATGACAAACAAGGTATGAA+AGG | - | chr7_1:60455605-60455624 | Msa1027940:CDS | 35.0% | |
| ! | TGAATCCATCTAAAGTGCTC+TGG | + | chr7_1:60452049-60452068 | None:intergenic | 40.0% |
| ! | GGAAAAGTACAGGAATCACA+AGG | - | chr7_1:60452086-60452105 | Msa1027940:CDS | 40.0% |
| TACAGGAATCACAAGGGAAA+TGG | - | chr7_1:60452093-60452112 | Msa1027940:CDS | 40.0% | |
| !!! | CAACTTTTAAGGTTGTACCC+TGG | - | chr7_1:60452234-60452253 | Msa1027940:CDS | 40.0% |
| ! | TTGGAGCTATTGTTTGAGAC+TGG | - | chr7_1:60452270-60452289 | Msa1027940:intron | 40.0% |
| GACTGGTGATATAACTGTGT+TGG | - | chr7_1:60452287-60452306 | Msa1027940:intron | 40.0% | |
| !! | TCTTTCCTGATTGGTCCTTT+TGG | - | chr7_1:60452394-60452413 | Msa1027940:intron | 40.0% |
| !! | CTTTCCTGATTGGTCCTTTT+GGG | - | chr7_1:60452395-60452414 | Msa1027940:intron | 40.0% |
| AGAAGACTTACCAACCCAAA+AGG | + | chr7_1:60452412-60452431 | None:intergenic | 40.0% | |
| TAATGCGCGTGAGAAACTTA+TGG | - | chr7_1:60452575-60452594 | Msa1027940:intron | 40.0% | |
| AATGCGCGTGAGAAACTTAT+GGG | - | chr7_1:60452576-60452595 | Msa1027940:intron | 40.0% | |
| CTGAGACTGGAATAAAACCA+TGG | - | chr7_1:60452663-60452682 | Msa1027940:intron | 40.0% | |
| ! | TGAATCCATCTAAAGTGCTC+TGG | + | chr7_1:60452049-60452068 | None:intergenic | 40.0% |
| ! | GGAAAAGTACAGGAATCACA+AGG | - | chr7_1:60452086-60452105 | Msa1027940:CDS | 40.0% |
| TACAGGAATCACAAGGGAAA+TGG | - | chr7_1:60452093-60452112 | Msa1027940:CDS | 40.0% | |
| ! | CAAGGGATTTGTTCACTGTA+TGG | - | chr7_1:60453564-60453583 | Msa1027940:CDS | 40.0% |
| ! | AGGGATTTGTTCACTGTATG+GGG | - | chr7_1:60453566-60453585 | Msa1027940:CDS | 40.0% |
| !!! | CAACTTTTAAGGTTGTACCC+TGG | - | chr7_1:60452234-60452253 | Msa1027940:CDS | 40.0% |
| ! | TTGGAGCTATTGTTTGAGAC+TGG | - | chr7_1:60452270-60452289 | Msa1027940:intron | 40.0% |
| GACTGGTGATATAACTGTGT+TGG | - | chr7_1:60452287-60452306 | Msa1027940:intron | 40.0% | |
| !! | TCTTTCCTGATTGGTCCTTT+TGG | - | chr7_1:60452394-60452413 | Msa1027940:intron | 40.0% |
| !! | CTTTCCTGATTGGTCCTTTT+GGG | - | chr7_1:60452395-60452414 | Msa1027940:intron | 40.0% |
| !! | TTTCCTGATTGGTCCTTTTG+GGG | - | chr7_1:60452396-60452415 | Msa1027940:intron | 40.0% |
| TAATGCGCGTGAGAAACTTA+TGG | - | chr7_1:60452575-60452594 | Msa1027940:intron | 40.0% | |
| AATGCGCGTGAGAAACTTAT+GGG | - | chr7_1:60452576-60452595 | Msa1027940:intron | 40.0% | |
| CTGAGACTGGAATAAAACCA+TGG | - | chr7_1:60452663-60452682 | Msa1027940:intron | 40.0% | |
| ACTGAGAGTGACAAACCTAA+AGG | + | chr7_1:60454606-60454625 | None:intergenic | 40.0% | |
| TTTATGTGGAAGGGAGATCA+TGG | - | chr7_1:60454670-60454689 | Msa1027940:intron | 40.0% | |
| GGTCACACACAAATCCTTTA+AGG | - | chr7_1:60455158-60455177 | Msa1027940:intron | 40.0% | |
| CAATCTGTCAGAAGCCTTAA+AGG | + | chr7_1:60455175-60455194 | None:intergenic | 40.0% | |
| !! | CTTTAAGGCTTCTGACAGAT+TGG | - | chr7_1:60455173-60455192 | Msa1027940:intron | 40.0% |
| ATTCAACAGGCAGAAGAGAT+TGG | - | chr7_1:60455334-60455353 | Msa1027940:CDS | 40.0% | |
| TGAAAACTTGGCATGTCCAA+TGG | - | chr7_1:60455495-60455514 | Msa1027940:intron | 40.0% | |
| GAAAACTTGGCATGTCCAAT+GGG | - | chr7_1:60455496-60455515 | Msa1027940:intron | 40.0% | |
| TGGTATATGGAGGGAGTTTA+TGG | - | chr7_1:60455519-60455538 | Msa1027940:CDS | 40.0% | |
| ! | ATCACTTGGTGACTTAACCA+TGG | + | chr7_1:60455551-60455570 | None:intergenic | 40.0% |
| ! | GTACATGGAAGTGTATCACT+TGG | + | chr7_1:60455565-60455584 | None:intergenic | 40.0% |
| ! | CATGTCCAGAGCACTTTAGA+TGG | - | chr7_1:60452041-60452060 | Msa1027940:CDS | 45.0% |
| AGGAATCACAAGGGAAATGG+TGG | - | chr7_1:60452096-60452115 | Msa1027940:CDS | 45.0% | |
| ! | ACAAGGGAAATGGTGGAAAG+TGG | - | chr7_1:60452103-60452122 | Msa1027940:CDS | 45.0% |
| TGAATTTGAAGGGCTGAGAC+TGG | - | chr7_1:60452650-60452669 | Msa1027940:intron | 45.0% | |
| !! | ACCATGGGAGAAAGTGTTGA+AGG | - | chr7_1:60452679-60452698 | Msa1027940:intron | 45.0% |
| TCCTTCAACACTTTCTCCCA+TGG | + | chr7_1:60452683-60452702 | None:intergenic | 45.0% | |
| CCTAAGCTTATACCTTCGTG+GGG | + | chr7_1:60452783-60452802 | None:intergenic | 45.0% | |
| GCCTAAGCTTATACCTTCGT+GGG | + | chr7_1:60452784-60452803 | None:intergenic | 45.0% | |
| TGCCTAAGCTTATACCTTCG+TGG | + | chr7_1:60452785-60452804 | None:intergenic | 45.0% | |
| ATGTCACAGACCAGCATGAT+TGG | - | chr7_1:60452810-60452829 | Msa1027940:CDS | 45.0% | |
| TACGAGCATTCCAATCATGC+TGG | + | chr7_1:60452823-60452842 | None:intergenic | 45.0% | |
| ! | CATGTCCAGAGCACTTTAGA+TGG | - | chr7_1:60452041-60452060 | Msa1027940:CDS | 45.0% |
| AGGAATCACAAGGGAAATGG+TGG | - | chr7_1:60452096-60452115 | Msa1027940:CDS | 45.0% | |
| ! | ACAAGGGAAATGGTGGAAAG+TGG | - | chr7_1:60452103-60452122 | Msa1027940:CDS | 45.0% |
| GAAGACTTACCAACCCCAAA+AGG | + | chr7_1:60453774-60453793 | None:intergenic | 45.0% | |
| TGAATTTGAAGGGCTGAGAC+TGG | - | chr7_1:60452650-60452669 | Msa1027940:intron | 45.0% | |
| !! | ACCATGGGAGAAAGTGTTGA+AGG | - | chr7_1:60452679-60452698 | Msa1027940:intron | 45.0% |
| TCCTTCAACACTTTCTCCCA+TGG | + | chr7_1:60452683-60452702 | None:intergenic | 45.0% | |
| CCTAAGCTTATACCTTCGTG+GGG | + | chr7_1:60452783-60452802 | None:intergenic | 45.0% | |
| GCCTAAGCTTATACCTTCGT+GGG | + | chr7_1:60452784-60452803 | None:intergenic | 45.0% | |
| TGCCTAAGCTTATACCTTCG+TGG | + | chr7_1:60452785-60452804 | None:intergenic | 45.0% | |
| ATGTCACAGACCAGCATGAT+TGG | - | chr7_1:60452810-60452829 | Msa1027940:CDS | 45.0% | |
| TACGAGCATTCCAATCATGC+TGG | + | chr7_1:60452823-60452842 | None:intergenic | 45.0% | |
| !! | ATGGGCCAGAAGTGCTTATA+AGG | + | chr7_1:60454786-60454805 | None:intergenic | 45.0% |
| CAGAAGAGATTGGCAGAGAA+GGG | - | chr7_1:60455344-60455363 | Msa1027940:CDS | 45.0% | |
| TTTGAACCAACCATACCTGC+AGG | - | chr7_1:60455454-60455473 | Msa1027940:intron | 45.0% | |
| CATGTCCAATGGGTGGTATA+TGG | - | chr7_1:60455506-60455525 | Msa1027940:intron | 45.0% | |
| TCCAATGGGTGGTATATGGA+GGG | - | chr7_1:60455510-60455529 | Msa1027940:CDS | 45.0% | |
| GGAGTTTATGGTTGAGTCCA+TGG | - | chr7_1:60455531-60455550 | Msa1027940:CDS | 45.0% | |
| !!! | TAAAAAAATTGATAATAAAA+AGG | - | chr7_1:60453017-60453036 | Msa1027940:intron | 5.0% |
| CCAAATCTGGTACTCTCCCA+GGG | + | chr7_1:60452254-60452273 | None:intergenic | 50.0% | |
| TCCAAATCTGGTACTCTCCC+AGG | + | chr7_1:60452255-60452274 | None:intergenic | 50.0% | |
| CCAACCCAAAAGGACCAATC+AGG | + | chr7_1:60452402-60452421 | None:intergenic | 50.0% | |
| !! | CCTGATTGGTCCTTTTGGGT+TGG | - | chr7_1:60452399-60452418 | Msa1027940:intron | 50.0% |
| CTCACGCGCATTATGCAGTT+TGG | + | chr7_1:60452568-60452587 | None:intergenic | 50.0% | |
| CGCGTGAGAAACTTATGGGA+CGG | - | chr7_1:60452580-60452599 | Msa1027940:intron | 50.0% | |
| ! | CCCCACGAAGGTATAAGCTT+AGG | - | chr7_1:60452780-60452799 | Msa1027940:CDS | 50.0% |
| CCAAATCTGGTACTCTCCCA+GGG | + | chr7_1:60452254-60452273 | None:intergenic | 50.0% | |
| TCCAAATCTGGTACTCTCCC+AGG | + | chr7_1:60452255-60452274 | None:intergenic | 50.0% | |
| CAACCCCAAAAGGACCAATC+AGG | + | chr7_1:60453764-60453783 | None:intergenic | 50.0% | |
| !!! | CTGATTGGTCCTTTTGGGGT+TGG | - | chr7_1:60453762-60453781 | Msa1027940:intron | 50.0% |
| CTCACGCGCATTATGCAGTT+TGG | + | chr7_1:60452568-60452587 | None:intergenic | 50.0% | |
| CGCGTGAGAAACTTATGGGA+CGG | - | chr7_1:60452580-60452599 | Msa1027940:intron | 50.0% | |
| ! | CCCCACGAAGGTATAAGCTT+AGG | - | chr7_1:60452780-60452799 | Msa1027940:CDS | 50.0% |
| GGGCAATACACATCCAGAGA+AGG | - | chr7_1:60454851-60454870 | Msa1027940:CDS | 50.0% | |
| GCAGAAGAGATTGGCAGAGA+AGG | - | chr7_1:60455343-60455362 | Msa1027940:CDS | 50.0% | |
| AACTTGGCATGTCCAATGGG+TGG | - | chr7_1:60455499-60455518 | Msa1027940:intron | 50.0% | |
| GTCCAATGGGTGGTATATGG+AGG | - | chr7_1:60455509-60455528 | Msa1027940:CDS | 50.0% | |
| TCCCTCCATATACCACCCAT+TGG | + | chr7_1:60455514-60455533 | None:intergenic | 50.0% | |
| !! | CCCTGGGAGAGTACCAGATT+TGG | - | chr7_1:60452251-60452270 | Msa1027940:CDS | 55.0% |
| ACACACATGTGTCCCCACGA+AGG | - | chr7_1:60452768-60452787 | Msa1027940:CDS | 55.0% | |
| !! | CCCTGGGAGAGTACCAGATT+TGG | - | chr7_1:60452251-60452270 | Msa1027940:CDS | 55.0% |
| ACACACATGTGTCCCCACGA+AGG | - | chr7_1:60452768-60452787 | Msa1027940:CDS | 55.0% | |
| ACTGCTCCTGCAGGTATGGT+TGG | + | chr7_1:60455463-60455482 | None:intergenic | 55.0% | |
| CTCAACTGCTCCTGCAGGTA+TGG | + | chr7_1:60455467-60455486 | None:intergenic | 55.0% | |
| CATACCTGCAGGAGCAGTTG+AGG | - | chr7_1:60455465-60455484 | Msa1027940:intron | 55.0% | |
| CAAACCTCAACTGCTCCTGC+AGG | + | chr7_1:60455472-60455491 | None:intergenic | 55.0% | |
| GGACGCACGAGAACCTCCTA+AGG | + | chr7_1:60452464-60452483 | None:intergenic | 60.0% | |
| GGACGCACGAGAACCTCCTA+AGG | + | chr7_1:60452464-60452483 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 60451962 | 60455659 | 60451962 | ID=Msa1027940;Name=Msa1027940 |
| chr7_1 | mRNA | 60451962 | 60455659 | 60451962 | ID=Msa1027940-mRNA-1;Parent=Msa1027940;Name=Msa1027940-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.5|0.44|0.88|1|1|9|53|632 |
| chr7_1 | exon | 60451962 | 60452278 | 60451962 | ID=Msa1027940-mRNA-1:exon:12562;Parent=Msa1027940-mRNA-1 |
| chr7_1 | exon | 60452749 | 60452959 | 60452749 | ID=Msa1027940-mRNA-1:exon:12561;Parent=Msa1027940-mRNA-1 |
| chr7_1 | exon | 60453254 | 60453318 | 60453254 | ID=Msa1027940-mRNA-1:exon:12560;Parent=Msa1027940-mRNA-1 |
| chr7_1 | exon | 60453405 | 60453597 | 60453405 | ID=Msa1027940-mRNA-1:exon:12559;Parent=Msa1027940-mRNA-1 |
| chr7_1 | exon | 60453838 | 60454385 | 60453838 | ID=Msa1027940-mRNA-1:exon:12558;Parent=Msa1027940-mRNA-1 |
| chr7_1 | exon | 60454768 | 60454960 | 60454768 | ID=Msa1027940-mRNA-1:exon:12557;Parent=Msa1027940-mRNA-1 |
| chr7_1 | exon | 60455073 | 60455130 | 60455073 | ID=Msa1027940-mRNA-1:exon:12556;Parent=Msa1027940-mRNA-1 |
| chr7_1 | exon | 60455201 | 60455414 | 60455201 | ID=Msa1027940-mRNA-1:exon:12555;Parent=Msa1027940-mRNA-1 |
| chr7_1 | exon | 60455507 | 60455659 | 60455507 | ID=Msa1027940-mRNA-1:exon:12554;Parent=Msa1027940-mRNA-1 |
| chr7_1 | CDS | 60455507 | 60455659 | 60455507 | ID=Msa1027940-mRNA-1:cds;Parent=Msa1027940-mRNA-1 |
| chr7_1 | CDS | 60455201 | 60455414 | 60455201 | ID=Msa1027940-mRNA-1:cds;Parent=Msa1027940-mRNA-1 |
| chr7_1 | CDS | 60455073 | 60455130 | 60455073 | ID=Msa1027940-mRNA-1:cds;Parent=Msa1027940-mRNA-1 |
| chr7_1 | CDS | 60454768 | 60454960 | 60454768 | ID=Msa1027940-mRNA-1:cds;Parent=Msa1027940-mRNA-1 |
| chr7_1 | CDS | 60453838 | 60454385 | 60453838 | ID=Msa1027940-mRNA-1:cds;Parent=Msa1027940-mRNA-1 |
| chr7_1 | CDS | 60453405 | 60453597 | 60453405 | ID=Msa1027940-mRNA-1:cds;Parent=Msa1027940-mRNA-1 |
| chr7_1 | CDS | 60453254 | 60453318 | 60453254 | ID=Msa1027940-mRNA-1:cds;Parent=Msa1027940-mRNA-1 |
| chr7_1 | CDS | 60452749 | 60452959 | 60452749 | ID=Msa1027940-mRNA-1:cds;Parent=Msa1027940-mRNA-1 |
| chr7_1 | CDS | 60452015 | 60452278 | 60452015 | ID=Msa1027940-mRNA-1:cds;Parent=Msa1027940-mRNA-1 |
| chr7_1 | three_prime_UTR | 60451962 | 60452014 | 60451962 | ID=Msa1027940-mRNA-1:three_prime_utr;Parent=Msa1027940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
