AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0171540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0171540 MtrunA17_Chr1g0189681 80.000 50 10 0 63 112 177 226 1.19e-20 87.8
Msa0171540 MtrunA17_Chr1g0189681 84.444 45 7 0 109 153 292 336 2.67e-19 84.0
Msa0171540 MtrunA17_Chr6g0456641 29.655 145 52 1 63 157 106 250 1.64e-14 70.9
Msa0171540 MtrunA17_Chr6g0456541 56.604 53 23 0 60 112 457 509 1.88e-12 65.1
Msa0171540 MtrunA17_Chr6g0456561 56.604 53 23 0 60 112 446 498 3.58e-12 64.3
Msa0171540 MtrunA17_Chr7g0218781 58.000 50 21 0 63 112 394 443 5.52e-12 63.9
Msa0171540 MtrunA17_Chr7g0219071 39.773 88 35 1 63 150 443 512 6.16e-12 63.5
Msa0171540 MtrunA17_Chr6g0456571 56.000 50 22 0 63 112 396 445 7.71e-12 63.5
Msa0171540 MtrunA17_Chr4g0018941 58.824 51 20 1 63 112 359 409 1.92e-11 62.4
Msa0171540 MtrunA17_Chr1g0189691 43.636 55 23 1 109 163 2 48 3.93e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 44 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAAACATTGATCCATATT+GGG 0.256708 1_4:-56346606 Msa0171540:CDS
TTGTAAACATTGATCCATAT+TGG 0.286933 1_4:-56346607 Msa0171540:CDS
CACTCGAGATATTTCCTTGA+TGG 0.293905 1_4:-56346641 Msa0171540:CDS
TCTTCATTTCTCTCCGCTTC+AGG 0.294757 1_4:-56347721 Msa0171540:intron
GGTGAAACCTTCAAATCCTT+TGG 0.316954 1_4:-56347792 Msa0171540:CDS
CGCTTGATAGGTTTAGAATA+TGG 0.329607 1_4:-56346484 Msa0171540:intron
TTATACTTCTTACCCCAATA+TGG 0.333060 1_4:+56346593 None:intergenic
AATACTTTCCAAAGCTGTTA+AGG 0.338125 1_4:+56346432 None:intergenic
AAACCAGGGTTTGCTTATCT+TGG 0.353049 1_4:-56346352 Msa0171540:CDS
AGTGAACTTGTTGGTGTTGT+TGG 0.356391 1_4:-56347051 Msa0171540:CDS
CACTCACCCAAAGGATTTGA+AGG 0.360881 1_4:+56347785 None:intergenic
TGGAGCAACCTTAACAGCTT+TGG 0.376313 1_4:-56346440 Msa0171540:CDS
GAGAAGATAAGAAAGTTAAC+TGG 0.381599 1_4:-56346149 Msa0171540:CDS
AGGAAATATCTCGAGTGATA+TGG 0.399023 1_4:+56346647 None:intergenic
TTGTGATAAGGAAGGTGCTT+TGG 0.403486 1_4:-56346171 Msa0171540:CDS
GTGAAACCTTCAAATCCTTT+GGG 0.426258 1_4:-56347791 Msa0171540:CDS
GTAACTTGGCACTCTATGAA+TGG 0.450505 1_4:-56346994 Msa0171540:intron
AGGATTCATAGTAGAAGTTA+AGG 0.451202 1_4:-56346089 None:intergenic
CTTCAAATCCTTTGGGTGAG+TGG 0.466154 1_4:-56347784 Msa0171540:CDS
TTGGTGTTGTTGGTGATCCA+TGG 0.469297 1_4:-56347041 Msa0171540:CDS
TCTGACTCTAGTTATGACTT+TGG 0.479169 1_4:-56346692 Msa0171540:CDS
TTTGTAGAGAATTTGTGATA+AGG 0.486578 1_4:-56346183 Msa0171540:intron
AGAAGGAATGAATATGTATG+AGG 0.491603 1_4:-56346383 Msa0171540:CDS
GAAGATGACGAGAGGAATCA+AGG 0.500975 1_4:+56347742 None:intergenic
AAATCCTTTGGGTGAGTGGT+TGG 0.505191 1_4:-56347780 Msa0171540:CDS
TAGAGAATTTGTGATAAGGA+AGG 0.511186 1_4:-56346179 Msa0171540:CDS
GACGCCAATGTTGTTACTGT+TGG 0.529324 1_4:-56346460 Msa0171540:CDS
TTTATATGATCAGGAATATG+GGG 0.551445 1_4:-56346740 Msa0171540:intron
GTAAACATTGATCCATATTG+GGG 0.577879 1_4:-56346605 Msa0171540:intron
AGCATTGATAGTGAACTTGT+TGG 0.579501 1_4:-56347060 Msa0171540:CDS
CAAGAACAGCAATACCATCA+AGG 0.580016 1_4:+56346627 None:intergenic
GCGAAGGAGTTAACCTGAAG+CGG 0.584261 1_4:+56347708 None:intergenic
ATGTGGTGGCATGTAAGAGA+AGG 0.604058 1_4:-56346400 Msa0171540:CDS
GGAGGAGTTGTTACAAAACA+AGG 0.618888 1_4:-56346719 Msa0171540:CDS
AACACCAACCACTCACCCAA+AGG 0.626193 1_4:+56347776 None:intergenic
GAAATGAAGAAGATGACGAG+AGG 0.627048 1_4:+56347734 None:intergenic
ATATGATCAGGAATATGGGG+AGG 0.640187 1_4:-56346737 Msa0171540:intron
TGCTCCAACAGTAACAACAT+TGG 0.651685 1_4:+56346456 None:intergenic
AAAGTATTAGAGCTCAAATG+TGG 0.658452 1_4:-56346417 Msa0171540:CDS
GTATTAGAGCTCAAATGTGG+TGG 0.662975 1_4:-56346414 Msa0171540:CDS
GCACCAAGATAAGCAAACCC+TGG 0.666993 1_4:+56346349 None:intergenic
CATTGAGTAATCCATCGTGG+AGG 0.703515 1_4:-56346109 Msa0171540:CDS
CTACTATGAATCCTCCACGA+TGG 0.712044 1_4:+56346098 None:intergenic
ATTCATTGAGTAATCCATCG+TGG 0.717546 1_4:-56346112 Msa0171540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATTATGAAATTGTTT+CGG - chr1_4:56346926-56346945 Msa0171540:intron 10.0%
!! ATTATATTATGAAATTGTTT+CGG - chr1_4:56346926-56346945 Msa0171540:intron 10.0%
!!! AAATGGATTTTTATATGATC+AGG - chr1_4:56347136-56347155 Msa0171540:intron 20.0%
!!! TTTTTATATGATCAGGAATA+TGG - chr1_4:56347143-56347162 Msa0171540:intron 20.0%
!!! TTTTATATGATCAGGAATAT+GGG - chr1_4:56347144-56347163 Msa0171540:intron 20.0%
!!! AAAACAAACACTTTTGAAAT+AGG + chr1_4:56347604-56347623 None:intergenic 20.0%
!!! AAATGGATTTTTATATGATC+AGG - chr1_4:56347136-56347155 Msa0171540:intron 20.0%
!!! TTTTTATATGATCAGGAATA+TGG - chr1_4:56347143-56347162 Msa0171540:intron 20.0%
!!! TTTTATATGATCAGGAATAT+GGG - chr1_4:56347144-56347163 Msa0171540:intron 20.0%
!!! AAAACAAACACTTTTGAAAT+AGG + chr1_4:56347604-56347623 None:intergenic 20.0%
! ATGTAAATGACGAAGAAAAT+GGG + chr1_4:56346298-56346317 None:intergenic 25.0%
! GTGATAATTAATGTAACCAT+AGG + chr1_4:56346542-56346561 None:intergenic 25.0%
! ATGGTTACATTAATTATCAC+CGG - chr1_4:56346542-56346561 Msa0171540:intron 25.0%
!! TAAATTCATCTGAGATAACA+AGG - chr1_4:56346973-56346992 Msa0171540:intron 25.0%
!!! AGGACTTCATCTTATTTTTA+TGG - chr1_4:56346993-56347012 Msa0171540:intron 25.0%
! TTTATGGATAATTGATTGCA+AGG - chr1_4:56347009-56347028 Msa0171540:CDS 25.0%
!! TTCAAATACTTCCTAACTTT+TGG + chr1_4:56347077-56347096 None:intergenic 25.0%
! TTTATATGATCAGGAATATG+GGG - chr1_4:56347145-56347164 Msa0171540:intron 25.0%
! TTGTAAACATTGATCCATAT+TGG - chr1_4:56347278-56347297 Msa0171540:intron 25.0%
! TGTAAACATTGATCCATATT+GGG - chr1_4:56347279-56347298 Msa0171540:intron 25.0%
! TTTGTAGAGAATTTGTGATA+AGG - chr1_4:56347702-56347721 Msa0171540:intron 25.0%
! ATGTAAATGACGAAGAAAAT+GGG + chr1_4:56346298-56346317 None:intergenic 25.0%
! GTGATAATTAATGTAACCAT+AGG + chr1_4:56346542-56346561 None:intergenic 25.0%
! ATGGTTACATTAATTATCAC+CGG - chr1_4:56346542-56346561 Msa0171540:intron 25.0%
!! TAAATTCATCTGAGATAACA+AGG - chr1_4:56346973-56346992 Msa0171540:intron 25.0%
!!! AGGACTTCATCTTATTTTTA+TGG - chr1_4:56346993-56347012 Msa0171540:intron 25.0%
! TTTATGGATAATTGATTGCA+AGG - chr1_4:56347009-56347028 Msa0171540:CDS 25.0%
!! TTCAAATACTTCCTAACTTT+TGG + chr1_4:56347077-56347096 None:intergenic 25.0%
! TTTATATGATCAGGAATATG+GGG - chr1_4:56347145-56347164 Msa0171540:intron 25.0%
! TTGTAAACATTGATCCATAT+TGG - chr1_4:56347278-56347297 Msa0171540:intron 25.0%
! TGTAAACATTGATCCATATT+GGG - chr1_4:56347279-56347298 Msa0171540:intron 25.0%
! TTTGTAGAGAATTTGTGATA+AGG - chr1_4:56347702-56347721 Msa0171540:intron 25.0%
ATGATTGAATGAGTAAGAGA+CGG + chr1_4:56346207-56346226 None:intergenic 30.0%
GATGTAAATGACGAAGAAAA+TGG + chr1_4:56346299-56346318 None:intergenic 30.0%
!!! ATTGTTTCTGATGCGTTTTA+TGG - chr1_4:56346438-56346457 Msa0171540:CDS 30.0%
TTAGGATCTCCATAGTTTAA+TGG - chr1_4:56346472-56346491 Msa0171540:CDS 30.0%
CAAAACTATCCTAATCTATG+AGG + chr1_4:56346578-56346597 None:intergenic 30.0%
TTGATGTGATTCCAAAAGTT+AGG - chr1_4:56347063-56347082 Msa0171540:intron 30.0%
GATGGAACTTTCAAAGAAAA+TGG - chr1_4:56347119-56347138 Msa0171540:intron 30.0%
GTAAACATTGATCCATATTG+GGG - chr1_4:56347280-56347299 Msa0171540:intron 30.0%
TTATACTTCTTACCCCAATA+TGG + chr1_4:56347295-56347314 None:intergenic 30.0%
AGTATGCATTAACAACTTCA+CGG + chr1_4:56347373-56347392 None:intergenic 30.0%
AATACTTTCCAAAGCTGTTA+AGG + chr1_4:56347456-56347475 None:intergenic 30.0%
! AAAGTATTAGAGCTCAAATG+TGG - chr1_4:56347468-56347487 Msa0171540:intron 30.0%
AGAAGGAATGAATATGTATG+AGG - chr1_4:56347502-56347521 Msa0171540:intron 30.0%
! TATGAGGAAGATTTTAAACC+AGG - chr1_4:56347518-56347537 Msa0171540:intron 30.0%
! ATGAGGAAGATTTTAAACCA+GGG - chr1_4:56347519-56347538 Msa0171540:intron 30.0%
!!! ACTTTTGAAATAGGCAACAA+TGG + chr1_4:56347595-56347614 None:intergenic 30.0%
TTCTGATGTTGAATATGTGA+AGG - chr1_4:56347622-56347641 Msa0171540:intron 30.0%
TAGAGAATTTGTGATAAGGA+AGG - chr1_4:56347706-56347725 Msa0171540:intron 30.0%
GAGAAGATAAGAAAGTTAAC+TGG - chr1_4:56347736-56347755 Msa0171540:CDS 30.0%
!!! AAGTTAACTGGTTTTGATGA+TGG - chr1_4:56347748-56347767 Msa0171540:CDS 30.0%
ATGATTGAATGAGTAAGAGA+CGG + chr1_4:56346207-56346226 None:intergenic 30.0%
GATGTAAATGACGAAGAAAA+TGG + chr1_4:56346299-56346318 None:intergenic 30.0%
!!! ATTGTTTCTGATGCGTTTTA+TGG - chr1_4:56346438-56346457 Msa0171540:CDS 30.0%
TTAGGATCTCCATAGTTTAA+TGG - chr1_4:56346472-56346491 Msa0171540:CDS 30.0%
CAAAACTATCCTAATCTATG+AGG + chr1_4:56346578-56346597 None:intergenic 30.0%
TTGATGTGATTCCAAAAGTT+AGG - chr1_4:56347063-56347082 Msa0171540:intron 30.0%
GATGGAACTTTCAAAGAAAA+TGG - chr1_4:56347119-56347138 Msa0171540:intron 30.0%
GTAAACATTGATCCATATTG+GGG - chr1_4:56347280-56347299 Msa0171540:intron 30.0%
TTATACTTCTTACCCCAATA+TGG + chr1_4:56347295-56347314 None:intergenic 30.0%
AGTATGCATTAACAACTTCA+CGG + chr1_4:56347373-56347392 None:intergenic 30.0%
AATACTTTCCAAAGCTGTTA+AGG + chr1_4:56347456-56347475 None:intergenic 30.0%
! AAAGTATTAGAGCTCAAATG+TGG - chr1_4:56347468-56347487 Msa0171540:intron 30.0%
AGAAGGAATGAATATGTATG+AGG - chr1_4:56347502-56347521 Msa0171540:intron 30.0%
! TATGAGGAAGATTTTAAACC+AGG - chr1_4:56347518-56347537 Msa0171540:intron 30.0%
! ATGAGGAAGATTTTAAACCA+GGG - chr1_4:56347519-56347538 Msa0171540:intron 30.0%
!!! ACTTTTGAAATAGGCAACAA+TGG + chr1_4:56347595-56347614 None:intergenic 30.0%
TTCTGATGTTGAATATGTGA+AGG - chr1_4:56347622-56347641 Msa0171540:intron 30.0%
TAGAGAATTTGTGATAAGGA+AGG - chr1_4:56347706-56347725 Msa0171540:intron 30.0%
GAGAAGATAAGAAAGTTAAC+TGG - chr1_4:56347736-56347755 Msa0171540:CDS 30.0%
!!! AAGTTAACTGGTTTTGATGA+TGG - chr1_4:56347748-56347767 Msa0171540:CDS 30.0%
GTGAAACCTTCAAATCCTTT+GGG - chr1_4:56346094-56346113 Msa0171540:CDS 35.0%
TGATTGAATGAGTAAGAGAC+GGG + chr1_4:56346206-56346225 None:intergenic 35.0%
CAGAGTTCTACTTTGTTAAG+TGG + chr1_4:56346271-56346290 None:intergenic 35.0%
!! TGCAGGTGATAGTGATTTTA+GGG + chr1_4:56346362-56346381 None:intergenic 35.0%
!! TTGCAGGTGATAGTGATTTT+AGG + chr1_4:56346363-56346382 None:intergenic 35.0%
TAGGGTTTAACAAACATTGC+AGG + chr1_4:56346379-56346398 None:intergenic 35.0%
! GTTGATTGATTCAGGGTTTA+GGG + chr1_4:56346397-56346416 None:intergenic 35.0%
! AGTTGATTGATTCAGGGTTT+AGG + chr1_4:56346398-56346417 None:intergenic 35.0%
!! GAGCTAAGTTGATTGATTCA+GGG + chr1_4:56346404-56346423 None:intergenic 35.0%
!! TGAGCTAAGTTGATTGATTC+AGG + chr1_4:56346405-56346424 None:intergenic 35.0%
TTTATGGCCTAGTTAGACTT+AGG - chr1_4:56346454-56346473 Msa0171540:CDS 35.0%
CTAACTAGGCCATTAAACTA+TGG + chr1_4:56346484-56346503 None:intergenic 35.0%
TTAATGGCCTAGTTAGACTT+AGG - chr1_4:56346488-56346507 Msa0171540:intron 35.0%
!! AGCATTGATAGTGAACTTGT+TGG - chr1_4:56346825-56346844 Msa0171540:intron 35.0%
CCAAGTTACAAAAACAGGAT+CGG + chr1_4:56346880-56346899 None:intergenic 35.0%
TGGATAATTGATTGCAAGGT+TGG - chr1_4:56347013-56347032 Msa0171540:CDS 35.0%
TGAAAGAGATCATTGAGCTT+TGG - chr1_4:56347093-56347112 Msa0171540:intron 35.0%
TCTGACTCTAGTTATGACTT+TGG - chr1_4:56347193-56347212 Msa0171540:intron 35.0%
AGGAAATATCTCGAGTGATA+TGG + chr1_4:56347241-56347260 None:intergenic 35.0%
GTATGCATTAACAACTTCAC+GGG + chr1_4:56347372-56347391 None:intergenic 35.0%
! CGCTTGATAGGTTTAGAATA+TGG - chr1_4:56347401-56347420 Msa0171540:intron 35.0%
GAATATGTGAAGGAACTTGT+CGG - chr1_4:56347632-56347651 Msa0171540:intron 35.0%
AATATGTGAAGGAACTTGTC+GGG - chr1_4:56347633-56347652 Msa0171540:intron 35.0%
ATTCATTGAGTAATCCATCG+TGG - chr1_4:56347773-56347792 Msa0171540:CDS 35.0%
GTGAAACCTTCAAATCCTTT+GGG - chr1_4:56346094-56346113 Msa0171540:CDS 35.0%
TGATTGAATGAGTAAGAGAC+GGG + chr1_4:56346206-56346225 None:intergenic 35.0%
CAGAGTTCTACTTTGTTAAG+TGG + chr1_4:56346271-56346290 None:intergenic 35.0%
!! TGCAGGTGATAGTGATTTTA+GGG + chr1_4:56346362-56346381 None:intergenic 35.0%
!! TTGCAGGTGATAGTGATTTT+AGG + chr1_4:56346363-56346382 None:intergenic 35.0%
TAGGGTTTAACAAACATTGC+AGG + chr1_4:56346379-56346398 None:intergenic 35.0%
! GTTGATTGATTCAGGGTTTA+GGG + chr1_4:56346397-56346416 None:intergenic 35.0%
! AGTTGATTGATTCAGGGTTT+AGG + chr1_4:56346398-56346417 None:intergenic 35.0%
!! GAGCTAAGTTGATTGATTCA+GGG + chr1_4:56346404-56346423 None:intergenic 35.0%
!! TGAGCTAAGTTGATTGATTC+AGG + chr1_4:56346405-56346424 None:intergenic 35.0%
TTTATGGCCTAGTTAGACTT+AGG - chr1_4:56346454-56346473 Msa0171540:CDS 35.0%
CTAACTAGGCCATTAAACTA+TGG + chr1_4:56346484-56346503 None:intergenic 35.0%
TTAATGGCCTAGTTAGACTT+AGG - chr1_4:56346488-56346507 Msa0171540:intron 35.0%
!! AGCATTGATAGTGAACTTGT+TGG - chr1_4:56346825-56346844 Msa0171540:intron 35.0%
CCAAGTTACAAAAACAGGAT+CGG + chr1_4:56346880-56346899 None:intergenic 35.0%
TGGATAATTGATTGCAAGGT+TGG - chr1_4:56347013-56347032 Msa0171540:CDS 35.0%
TGAAAGAGATCATTGAGCTT+TGG - chr1_4:56347093-56347112 Msa0171540:intron 35.0%
TCTGACTCTAGTTATGACTT+TGG - chr1_4:56347193-56347212 Msa0171540:intron 35.0%
AGGAAATATCTCGAGTGATA+TGG + chr1_4:56347241-56347260 None:intergenic 35.0%
GTATGCATTAACAACTTCAC+GGG + chr1_4:56347372-56347391 None:intergenic 35.0%
! CGCTTGATAGGTTTAGAATA+TGG - chr1_4:56347401-56347420 Msa0171540:intron 35.0%
GAATATGTGAAGGAACTTGT+CGG - chr1_4:56347632-56347651 Msa0171540:intron 35.0%
AATATGTGAAGGAACTTGTC+GGG - chr1_4:56347633-56347652 Msa0171540:intron 35.0%
ATTCATTGAGTAATCCATCG+TGG - chr1_4:56347773-56347792 Msa0171540:CDS 35.0%
GGTGAAACCTTCAAATCCTT+TGG - chr1_4:56346093-56346112 Msa0171540:CDS 40.0%
GAAATGAAGAAGATGACGAG+AGG + chr1_4:56346154-56346173 None:intergenic 40.0%
TGGAGATCCTAAGTCTAACT+AGG + chr1_4:56346464-56346483 None:intergenic 40.0%
TGGAGATCCTAAGTCTAACT+AGG + chr1_4:56346464-56346483 None:intergenic 40.0%
GTTGATGTGCCTCATAGATT+AGG - chr1_4:56346566-56346585 Msa0171540:intron 40.0%
! GTTTGTTACACTGTGTCTAG+TGG - chr1_4:56346651-56346670 Msa0171540:CDS 40.0%
TGTTTGGATTGAGTAGACCT+TGG - chr1_4:56346682-56346701 Msa0171540:CDS 40.0%
AGTAGACCTTGGAGAAGAAA+GGG - chr1_4:56346693-56346712 Msa0171540:CDS 40.0%
!! AGTGAACTTGTTGGTGTTGT+TGG - chr1_4:56346834-56346853 Msa0171540:intron 40.0%
!!! CCGATCCTGTTTTTGTAACT+TGG - chr1_4:56346877-56346896 Msa0171540:intron 40.0%
GAGTGCCAAGTTACAAAAAC+AGG + chr1_4:56346885-56346904 None:intergenic 40.0%
GTAACTTGGCACTCTATGAA+TGG - chr1_4:56346891-56346910 Msa0171540:intron 40.0%
GTTCCTTTGAACGATGTTGA+GGG - chr1_4:56346948-56346967 Msa0171540:intron 40.0%
!! ATCATTGAGCTTTGGCTTGA+TGG - chr1_4:56347101-56347120 Msa0171540:intron 40.0%
ATATGATCAGGAATATGGGG+AGG - chr1_4:56347148-56347167 Msa0171540:intron 40.0%
GGAGGAGTTGTTACAAAACA+AGG - chr1_4:56347166-56347185 Msa0171540:intron 40.0%
CACTCGAGATATTTCCTTGA+TGG - chr1_4:56347244-56347263 Msa0171540:intron 40.0%
CAAGAACAGCAATACCATCA+AGG + chr1_4:56347261-56347280 None:intergenic 40.0%
! GCGTCAAACTTGTTCACTTA+TGG - chr1_4:56347315-56347334 Msa0171540:intron 40.0%
TACTATTCTGCTCGCTTGAT+AGG - chr1_4:56347389-56347408 Msa0171540:intron 40.0%
TGCTCCAACAGTAACAACAT+TGG + chr1_4:56347432-56347451 None:intergenic 40.0%
GTATTAGAGCTCAAATGTGG+TGG - chr1_4:56347471-56347490 Msa0171540:intron 40.0%
! AAACCAGGGTTTGCTTATCT+TGG - chr1_4:56347533-56347552 Msa0171540:intron 40.0%
!! TTGGTGCTAGAGACAATGTA+TGG - chr1_4:56347552-56347571 Msa0171540:intron 40.0%
!! TTGTGATAAGGAAGGTGCTT+TGG - chr1_4:56347714-56347733 Msa0171540:intron 40.0%
GGTGAAACCTTCAAATCCTT+TGG - chr1_4:56346093-56346112 Msa0171540:CDS 40.0%
GAAATGAAGAAGATGACGAG+AGG + chr1_4:56346154-56346173 None:intergenic 40.0%
TGGAGATCCTAAGTCTAACT+AGG + chr1_4:56346464-56346483 None:intergenic 40.0%
TGGAGATCCTAAGTCTAACT+AGG + chr1_4:56346464-56346483 None:intergenic 40.0%
GTTGATGTGCCTCATAGATT+AGG - chr1_4:56346566-56346585 Msa0171540:intron 40.0%
! GTTTGTTACACTGTGTCTAG+TGG - chr1_4:56346651-56346670 Msa0171540:CDS 40.0%
TGTTTGGATTGAGTAGACCT+TGG - chr1_4:56346682-56346701 Msa0171540:CDS 40.0%
AGTAGACCTTGGAGAAGAAA+GGG - chr1_4:56346693-56346712 Msa0171540:CDS 40.0%
!! AGTGAACTTGTTGGTGTTGT+TGG - chr1_4:56346834-56346853 Msa0171540:intron 40.0%
!!! CCGATCCTGTTTTTGTAACT+TGG - chr1_4:56346877-56346896 Msa0171540:intron 40.0%
GAGTGCCAAGTTACAAAAAC+AGG + chr1_4:56346885-56346904 None:intergenic 40.0%
GTAACTTGGCACTCTATGAA+TGG - chr1_4:56346891-56346910 Msa0171540:intron 40.0%
GTTCCTTTGAACGATGTTGA+GGG - chr1_4:56346948-56346967 Msa0171540:intron 40.0%
!! ATCATTGAGCTTTGGCTTGA+TGG - chr1_4:56347101-56347120 Msa0171540:intron 40.0%
ATATGATCAGGAATATGGGG+AGG - chr1_4:56347148-56347167 Msa0171540:intron 40.0%
GGAGGAGTTGTTACAAAACA+AGG - chr1_4:56347166-56347185 Msa0171540:intron 40.0%
CACTCGAGATATTTCCTTGA+TGG - chr1_4:56347244-56347263 Msa0171540:intron 40.0%
CAAGAACAGCAATACCATCA+AGG + chr1_4:56347261-56347280 None:intergenic 40.0%
! GCGTCAAACTTGTTCACTTA+TGG - chr1_4:56347315-56347334 Msa0171540:intron 40.0%
TACTATTCTGCTCGCTTGAT+AGG - chr1_4:56347389-56347408 Msa0171540:intron 40.0%
TGCTCCAACAGTAACAACAT+TGG + chr1_4:56347432-56347451 None:intergenic 40.0%
GTATTAGAGCTCAAATGTGG+TGG - chr1_4:56347471-56347490 Msa0171540:intron 40.0%
! AAACCAGGGTTTGCTTATCT+TGG - chr1_4:56347533-56347552 Msa0171540:intron 40.0%
!! TTGGTGCTAGAGACAATGTA+TGG - chr1_4:56347552-56347571 Msa0171540:intron 40.0%
!! TTGTGATAAGGAAGGTGCTT+TGG - chr1_4:56347714-56347733 Msa0171540:intron 40.0%
CACTCACCCAAAGGATTTGA+AGG + chr1_4:56346103-56346122 None:intergenic 45.0%
CTTCAAATCCTTTGGGTGAG+TGG - chr1_4:56346101-56346120 Msa0171540:CDS 45.0%
AAATCCTTTGGGTGAGTGGT+TGG - chr1_4:56346105-56346124 Msa0171540:CDS 45.0%
GAAGATGACGAGAGGAATCA+AGG + chr1_4:56346146-56346165 None:intergenic 45.0%
TCTTCATTTCTCTCCGCTTC+AGG - chr1_4:56346164-56346183 Msa0171540:CDS 45.0%
TGAATGAGTAAGAGACGGGT+AGG + chr1_4:56346202-56346221 None:intergenic 45.0%
GTAACCATAGGTGTCAGACT+CGG + chr1_4:56346530-56346549 None:intergenic 45.0%
TCTATGAGGCACATCAACAC+CGG + chr1_4:56346564-56346583 None:intergenic 45.0%
TCTAGTGGTGAAGCTGTGTT+TGG - chr1_4:56346666-56346685 Msa0171540:CDS 45.0%
GAGTAGACCTTGGAGAAGAA+AGG - chr1_4:56346692-56346711 Msa0171540:CDS 45.0%
ACCTTGGAGAAGAAAGGGTT+CGG - chr1_4:56346698-56346717 Msa0171540:CDS 45.0%
!! TTGGTGTTGTTGGTGATCCA+TGG - chr1_4:56346844-56346863 Msa0171540:intron 45.0%
!! GGATCGGTTTTCAAAAGCCA+TGG + chr1_4:56346864-56346883 None:intergenic 45.0%
GGTTCCTTTGAACGATGTTG+AGG - chr1_4:56346947-56346966 Msa0171540:intron 45.0%
AGTCCCTCAACATCGTTCAA+AGG + chr1_4:56346954-56346973 None:intergenic 45.0%
GACGCCAATGTTGTTACTGT+TGG - chr1_4:56347425-56347444 Msa0171540:intron 45.0%
TGGAGCAACCTTAACAGCTT+TGG - chr1_4:56347445-56347464 Msa0171540:intron 45.0%
ATGTGGTGGCATGTAAGAGA+AGG - chr1_4:56347485-56347504 Msa0171540:intron 45.0%
CATTGAGTAATCCATCGTGG+AGG - chr1_4:56347776-56347795 Msa0171540:CDS 45.0%
CTACTATGAATCCTCCACGA+TGG + chr1_4:56347790-56347809 None:intergenic 45.0%
CACTCACCCAAAGGATTTGA+AGG + chr1_4:56346103-56346122 None:intergenic 45.0%
CTTCAAATCCTTTGGGTGAG+TGG - chr1_4:56346101-56346120 Msa0171540:CDS 45.0%
AAATCCTTTGGGTGAGTGGT+TGG - chr1_4:56346105-56346124 Msa0171540:CDS 45.0%
GAAGATGACGAGAGGAATCA+AGG + chr1_4:56346146-56346165 None:intergenic 45.0%
TCTTCATTTCTCTCCGCTTC+AGG - chr1_4:56346164-56346183 Msa0171540:CDS 45.0%
TGAATGAGTAAGAGACGGGT+AGG + chr1_4:56346202-56346221 None:intergenic 45.0%
GTAACCATAGGTGTCAGACT+CGG + chr1_4:56346530-56346549 None:intergenic 45.0%
TCTATGAGGCACATCAACAC+CGG + chr1_4:56346564-56346583 None:intergenic 45.0%
TCTAGTGGTGAAGCTGTGTT+TGG - chr1_4:56346666-56346685 Msa0171540:CDS 45.0%
GAGTAGACCTTGGAGAAGAA+AGG - chr1_4:56346692-56346711 Msa0171540:CDS 45.0%
ACCTTGGAGAAGAAAGGGTT+CGG - chr1_4:56346698-56346717 Msa0171540:CDS 45.0%
!! TTGGTGTTGTTGGTGATCCA+TGG - chr1_4:56346844-56346863 Msa0171540:intron 45.0%
!! GGATCGGTTTTCAAAAGCCA+TGG + chr1_4:56346864-56346883 None:intergenic 45.0%
GGTTCCTTTGAACGATGTTG+AGG - chr1_4:56346947-56346966 Msa0171540:intron 45.0%
AGTCCCTCAACATCGTTCAA+AGG + chr1_4:56346954-56346973 None:intergenic 45.0%
GACGCCAATGTTGTTACTGT+TGG - chr1_4:56347425-56347444 Msa0171540:intron 45.0%
TGGAGCAACCTTAACAGCTT+TGG - chr1_4:56347445-56347464 Msa0171540:intron 45.0%
ATGTGGTGGCATGTAAGAGA+AGG - chr1_4:56347485-56347504 Msa0171540:intron 45.0%
CATTGAGTAATCCATCGTGG+AGG - chr1_4:56347776-56347795 Msa0171540:CDS 45.0%
CTACTATGAATCCTCCACGA+TGG + chr1_4:56347790-56347809 None:intergenic 45.0%
AACACCAACCACTCACCCAA+AGG + chr1_4:56346112-56346131 None:intergenic 50.0%
GCGAAGGAGTTAACCTGAAG+CGG + chr1_4:56346180-56346199 None:intergenic 50.0%
ACCGAACCCTTTCTTCTCCA+AGG + chr1_4:56346702-56346721 None:intergenic 50.0%
GCACCAAGATAAGCAAACCC+TGG + chr1_4:56347539-56347558 None:intergenic 50.0%
TGTGAAGGAACTTGTCGGGT+TGG - chr1_4:56347637-56347656 Msa0171540:intron 50.0%
GTGAAGGAACTTGTCGGGTT+GGG - chr1_4:56347638-56347657 Msa0171540:intron 50.0%
AACACCAACCACTCACCCAA+AGG + chr1_4:56346112-56346131 None:intergenic 50.0%
GCGAAGGAGTTAACCTGAAG+CGG + chr1_4:56346180-56346199 None:intergenic 50.0%
ACCGAACCCTTTCTTCTCCA+AGG + chr1_4:56346702-56346721 None:intergenic 50.0%
GCACCAAGATAAGCAAACCC+TGG + chr1_4:56347539-56347558 None:intergenic 50.0%
TGTGAAGGAACTTGTCGGGT+TGG - chr1_4:56347637-56347656 Msa0171540:intron 50.0%
GTGAAGGAACTTGTCGGGTT+GGG - chr1_4:56347638-56347657 Msa0171540:intron 50.0%
AGTAAGAGACGGGTAGGCGA+AGG + chr1_4:56346196-56346215 None:intergenic 55.0%
CCATAGGTGTCAGACTCGGA+CGG + chr1_4:56346526-56346545 None:intergenic 55.0%
GGGTTGGGACTGCTTGGTTT+GGG - chr1_4:56347653-56347672 Msa0171540:intron 55.0%
! GGTTGGGACTGCTTGGTTTG+GGG - chr1_4:56347654-56347673 Msa0171540:intron 55.0%
AGTAAGAGACGGGTAGGCGA+AGG + chr1_4:56346196-56346215 None:intergenic 55.0%
CCATAGGTGTCAGACTCGGA+CGG + chr1_4:56346526-56346545 None:intergenic 55.0%
GGGTTGGGACTGCTTGGTTT+GGG - chr1_4:56347653-56347672 Msa0171540:intron 55.0%
! GGTTGGGACTGCTTGGTTTG+GGG - chr1_4:56347654-56347673 Msa0171540:intron 55.0%
! GTCAGACTCGGACGGTGCTA+TGG + chr1_4:56346518-56346537 None:intergenic 60.0%
CCGTCCGAGTCTGACACCTA+TGG - chr1_4:56346523-56346542 Msa0171540:intron 60.0%
!! CTTGTCGGGTTGGGACTGCT+TGG - chr1_4:56347647-56347666 Msa0171540:intron 60.0%
! CGGGTTGGGACTGCTTGGTT+TGG - chr1_4:56347652-56347671 Msa0171540:intron 60.0%
!! GGGACTGCTTGGTTTGGGGA+AGG - chr1_4:56347658-56347677 Msa0171540:intron 60.0%
! GTCAGACTCGGACGGTGCTA+TGG + chr1_4:56346518-56346537 None:intergenic 60.0%
CCGTCCGAGTCTGACACCTA+TGG - chr1_4:56346523-56346542 Msa0171540:intron 60.0%
!! CTTGTCGGGTTGGGACTGCT+TGG - chr1_4:56347647-56347666 Msa0171540:intron 60.0%
! CGGGTTGGGACTGCTTGGTT+TGG - chr1_4:56347652-56347671 Msa0171540:intron 60.0%
!! GGGACTGCTTGGTTTGGGGA+AGG - chr1_4:56347658-56347677 Msa0171540:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 56346091 56347816 56346091 ID=Msa0171540;Name=Msa0171540
chr1_4 mRNA 56346091 56347816 56346091 ID=Msa0171540-mRNA-1;Parent=Msa0171540;Name=Msa0171540-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0|0|0|1|1|1|5|0|196
chr1_4 exon 56347722 56347816 56347722 ID=Msa0171540-mRNA-1:exon:17086;Parent=Msa0171540-mRNA-1
chr1_4 exon 56346995 56347080 56346995 ID=Msa0171540-mRNA-1:exon:17085;Parent=Msa0171540-mRNA-1
chr1_4 exon 56346606 56346749 56346606 ID=Msa0171540-mRNA-1:exon:17084;Parent=Msa0171540-mRNA-1
chr1_4 exon 56346339 56346496 56346339 ID=Msa0171540-mRNA-1:exon:17083;Parent=Msa0171540-mRNA-1
chr1_4 exon 56346091 56346198 56346091 ID=Msa0171540-mRNA-1:exon:17082;Parent=Msa0171540-mRNA-1
chr1_4 CDS 56347722 56347816 56347722 ID=Msa0171540-mRNA-1:cds;Parent=Msa0171540-mRNA-1
chr1_4 CDS 56346995 56347080 56346995 ID=Msa0171540-mRNA-1:cds;Parent=Msa0171540-mRNA-1
chr1_4 CDS 56346606 56346749 56346606 ID=Msa0171540-mRNA-1:cds;Parent=Msa0171540-mRNA-1
chr1_4 CDS 56346339 56346496 56346339 ID=Msa0171540-mRNA-1:cds;Parent=Msa0171540-mRNA-1
chr1_4 CDS 56346091 56346198 56346091 ID=Msa0171540-mRNA-1:cds;Parent=Msa0171540-mRNA-1
Gene Sequence

>Msa0171540

ATGGTGAAACCTTCAAATCCTTTGGGTGAGTGGTTGGTGTTATCACTGCGTTCCTTGATTCCTCTCGTCATCTTCTTCATTTCTCTCCGCTTCAGCATTGATAGTGAACTTGTTGGTGTTGTTGGTGATCCATGGCTTTTGAAAACCGATCCTGTTTTTGTAACTTGGCACTCTATGAATGGAATATGGGGAGGAGTTGTTACAAAACAAGGATGTTCTGACTCTAGTTATGACTTTGGATCTGAATTTTATACTTCTCAACCATATCACTCGAGATATTTCCTTGATGGTATTGCTGTTCTTGTAAACATTGATCCATATTGGGGTTTAGAATATGGTGACGCCAATGTTGTTACTGTTGGAGCAACCTTAACAGCTTTGGAAAGTATTAGAGCTCAAATGTGGTGGCATGTAAGAGAAGGAATGAATATGTATGAGGAAGATTTTAAACCAGGGTTTGCTTATCTTGGTGCTAGAGACAATAGAATTTGTGATAAGGAAGGTGCTTTGGAGAAGATAAGAAAGTTAACTGGTTTTGATGATGGAAATTCATTGAGTAATCCATCGTGGAGGATTCATAGTAGAAGTTAA

Protein sequence

>Msa0171540

MVKPSNPLGEWLVLSLRSLIPLVIFFISLRFSIDSELVGVVGDPWLLKTDPVFVTWHSMNGIWGGVVTKQGCSDSSYDFGSEFYTSQPYHSRYFLDGIAVLVNIDPYWGLEYGDANVVTVGATLTALESIRAQMWWHVREGMNMYEEDFKPGFAYLGARDNRICDKEGALEKIRKLTGFDDGNSLSNPSWRIHSRS*