Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1029740 | XP_003624282.1 | 94.683 | 489 | 9 | 3 | 1 | 474 | 1 | 487 | 0.0 | 938 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1029740 | sp|A2Q1V6|ATG4_MEDTR | 94.683 | 489 | 9 | 3 | 1 | 474 | 1 | 487 | 0.0 | 938 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1029740 | G7KTD2 | 94.683 | 489 | 9 | 3 | 1 | 474 | 1 | 487 | 0.0 | 938 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0667770 | Msa1029740 | 0.801639 | 8.187774e-49 | -8.615850e-47 |
| Msa1029740 | Msa1068850 | 0.953007 | 7.051111e-111 | -8.615850e-47 |
| Msa1029740 | Msa1156630 | 0.889803 | 1.746699e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1029740 | MtrunA17_Chr7g0250241 | 87.730 | 489 | 10 | 3 | 1 | 474 | 1 | 454 | 0.0 | 831 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1029740 | AT2G44140.1 | 60.179 | 447 | 157 | 7 | 3 | 433 | 1 | 442 | 0.0 | 546 |
| Msa1029740 | AT2G44140.3 | 60.179 | 447 | 157 | 7 | 3 | 433 | 1 | 442 | 0.0 | 546 |
| Msa1029740 | AT2G44140.2 | 62.694 | 386 | 126 | 5 | 64 | 433 | 14 | 397 | 1.46e-177 | 504 |
| Msa1029740 | AT2G44140.4 | 63.889 | 360 | 114 | 3 | 89 | 433 | 1 | 359 | 7.05e-172 | 488 |
| Msa1029740 | AT2G44140.5 | 60.428 | 374 | 142 | 5 | 3 | 375 | 1 | 369 | 4.89e-163 | 466 |
| Msa1029740 | AT3G59950.1 | 56.823 | 447 | 174 | 5 | 3 | 432 | 1 | 445 | 6.38e-163 | 469 |
| Msa1029740 | AT3G59950.4 | 63.231 | 359 | 117 | 1 | 89 | 432 | 1 | 359 | 5.82e-159 | 456 |
| Msa1029740 | AT3G59950.5 | 57.979 | 376 | 152 | 5 | 3 | 375 | 1 | 373 | 7.48e-137 | 400 |
| Msa1029740 | AT3G59950.2 | 54.573 | 328 | 145 | 4 | 3 | 328 | 1 | 326 | 1.11e-105 | 319 |
| Msa1029740 | AT3G59950.3 | 62.602 | 246 | 92 | 0 | 89 | 334 | 1 | 246 | 1.87e-104 | 312 |
Find 136 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGCTATTTACGTTGTTTC+TGG | 0.136184 | 7_1:+63233742 | Msa1029740:CDS |
| AGAGAATGATGAAGAAATTT+TGG | 0.165836 | 7_1:-63231418 | None:intergenic |
| TTATTGGTTCCTTTGGTTCT+TGG | 0.168245 | 7_1:+63233871 | Msa1029740:CDS |
| TATTGTAGCCCGACATTTAT+AGG | 0.173191 | 7_1:-63235696 | None:intergenic |
| ACAATTCTGTAGCCAATAAA+AGG | 0.199002 | 7_1:-63235936 | None:intergenic |
| AGTATACTAGTGATGTTAAT+TGG | 0.200002 | 7_1:+63233161 | Msa1029740:CDS |
| ATTGACATCTTGCAACTATT+TGG | 0.209877 | 7_1:+63233553 | Msa1029740:CDS |
| TTGAACTCATTGTGATTCTT+TGG | 0.224858 | 7_1:+63235831 | Msa1029740:three_prime_UTR |
| CGGTTCAATGAGGAGATTTC+AGG | 0.252524 | 7_1:+63232853 | Msa1029740:CDS |
| GCCACGTAAAACATAGAATT+TGG | 0.253924 | 7_1:-63232552 | None:intergenic |
| ATTGATCCATCTTTGGCTAT+TGG | 0.271467 | 7_1:+63235349 | Msa1029740:CDS |
| AGATTCAATTGATCCATCTT+TGG | 0.287046 | 7_1:+63235342 | Msa1029740:CDS |
| TCCTCAGAGCCTTGGAATCT+TGG | 0.287759 | 7_1:+63234561 | Msa1029740:CDS |
| TTAAAAGTTGACTGCAATAA+AGG | 0.294600 | 7_1:-63234535 | None:intergenic |
| TGTTTACTCATTTGTTCATA+TGG | 0.297579 | 7_1:+63235861 | Msa1029740:three_prime_UTR |
| ATCGCGAATTGTTGTTGTTC+AGG | 0.325081 | 7_1:-63231395 | None:intergenic |
| CTTCAAGCTGGTAAAGGTTA+TGG | 0.328585 | 7_1:+63233613 | Msa1029740:CDS |
| TGGTCAACCTTCTTTACATC+TGG | 0.335280 | 7_1:+63232722 | Msa1029740:CDS |
| GGTGCTTCGACATACATTAT+TGG | 0.338715 | 7_1:+63234595 | Msa1029740:CDS |
| CCTCAGAGCCTTGGAATCTT+GGG | 0.343448 | 7_1:+63234562 | Msa1029740:CDS |
| CAAGCTCTGATGGCGATATA+TGG | 0.346988 | 7_1:+63232909 | Msa1029740:CDS |
| TTCAGGTATGCGACTTCGTT+CGG | 0.357924 | 7_1:-63231378 | None:intergenic |
| CTAGCTGTTGGGTCATGGGT+GGG | 0.361496 | 7_1:+63233637 | Msa1029740:CDS |
| AAGATGGATCAATTGAATCT+AGG | 0.366440 | 7_1:-63235339 | None:intergenic |
| CTTGCTCATTCTTCTCCCTC+TGG | 0.367196 | 7_1:-63233702 | None:intergenic |
| ATGGTCTAGCTGTTGGGTCA+TGG | 0.369139 | 7_1:+63233632 | Msa1029740:CDS |
| GATGGCGATATATGGCTTCT+AGG | 0.371719 | 7_1:+63232917 | Msa1029740:CDS |
| GTATACTAGTGATGTTAATT+GGG | 0.374403 | 7_1:+63233162 | Msa1029740:CDS |
| AGATTTCAGGAGCGTGTACT+AGG | 0.390219 | 7_1:+63232866 | Msa1029740:CDS |
| AAACTCTAAACAGCGTTTGC+AGG | 0.391047 | 7_1:-63233815 | None:intergenic |
| TGGTCTAGCTGTTGGGTCAT+GGG | 0.397135 | 7_1:+63233633 | Msa1029740:CDS |
| CAGTCAGATGCTTGTTGCTC+AGG | 0.397178 | 7_1:+63233201 | Msa1029740:CDS |
| TTTAAATTTCCTCAGAGCCT+TGG | 0.405739 | 7_1:+63234553 | Msa1029740:CDS |
| ATGTGCCTGCTAATGCTGTT+AGG | 0.412532 | 7_1:-63235313 | None:intergenic |
| TTCACAAATTAGGTAGATCA+TGG | 0.414869 | 7_1:+63233354 | Msa1029740:CDS |
| TTTCAAGGGGCCTAGTTCCT+TGG | 0.415808 | 7_1:+63233836 | Msa1029740:CDS |
| GCACTCTTCAAACGTTTAGT+AGG | 0.419679 | 7_1:+63235797 | Msa1029740:three_prime_UTR |
| GACTTGATAAAGTCAATCTA+AGG | 0.424719 | 7_1:+63233893 | Msa1029740:CDS |
| TAGCTGTTGGGTCATGGGTG+GGG | 0.425413 | 7_1:+63233638 | Msa1029740:CDS |
| AGTTTCCCAAGGCTTCCTTA+TGG | 0.427428 | 7_1:+63232702 | Msa1029740:CDS |
| ACAGTTCATTCTCGAAATAG+TGG | 0.430178 | 7_1:+63232797 | Msa1029740:CDS |
| AGATGGATCAATTGAATCTA+GGG | 0.433513 | 7_1:-63235338 | None:intergenic |
| TATTGAAGGATTTATGTGAT+AGG | 0.437062 | 7_1:+63232585 | Msa1029740:CDS |
| ATTTCACAGCATGAATCAAC+TGG | 0.438381 | 7_1:+63232953 | Msa1029740:CDS |
| AAAGGTTATGGTCTAGCTGT+TGG | 0.438899 | 7_1:+63233625 | Msa1029740:CDS |
| TTCTGCAAGCTTAGTTGCTC+GGG | 0.438986 | 7_1:-63235509 | None:intergenic |
| TGTAAAGAAGGTTGACCATA+AGG | 0.441752 | 7_1:-63232717 | None:intergenic |
| ATTGGTAGCGTACGTGGATA+AGG | 0.442501 | 7_1:-63231454 | None:intergenic |
| GAATTGCCAGTCATCTTCAT+TGG | 0.444109 | 7_1:-63235674 | None:intergenic |
| TTGTTTACCACTGCCGAGTT+CGG | 0.446268 | 7_1:+63235753 | Msa1029740:three_prime_UTR |
| GAATTACTTGTGACTTGCAT+TGG | 0.451605 | 7_1:-63235580 | None:intergenic |
| GCATCTTCAATGCAGACAAC+TGG | 0.452358 | 7_1:-63233793 | None:intergenic |
| AATTGTAGTGGATATTACTT+TGG | 0.452497 | 7_1:+63235953 | Msa1029740:three_prime_UTR |
| TGCAGATATTGACACAAACT+TGG | 0.453753 | 7_1:+63232515 | Msa1029740:intron |
| GACTGAGCTACAGTGAATAA+TGG | 0.459266 | 7_1:-63235547 | None:intergenic |
| AACCTTCTTCAAGCTGGTAA+AGG | 0.461307 | 7_1:+63233607 | Msa1029740:CDS |
| GTCACAAGTAATTCTGTGTC+AGG | 0.467454 | 7_1:+63235589 | Msa1029740:CDS |
| AATTACTTGTGACTTGCATT+GGG | 0.467885 | 7_1:-63235579 | None:intergenic |
| TCAATATATTCTTTATCCAC+TGG | 0.468590 | 7_1:-63233535 | None:intergenic |
| AACCTTTACCAGCTTGAAGA+AGG | 0.471470 | 7_1:-63233609 | None:intergenic |
| TGGCTTCATAATGGTATTGA+AGG | 0.475033 | 7_1:+63232571 | Msa1029740:exon |
| CTTCTGCAAGCTTAGTTGCT+CGG | 0.477017 | 7_1:-63235510 | None:intergenic |
| GGTTGACCATAAGGAAGCCT+TGG | 0.480154 | 7_1:-63232708 | None:intergenic |
| GTGCCCGCCTCTTCAAAGGC+AGG | 0.484347 | 7_1:+63232665 | Msa1029740:CDS |
| TCTAGCTGTTGGGTCATGGG+TGG | 0.486738 | 7_1:+63233636 | Msa1029740:CDS |
| CTTTGGCAATGTCAAATAAG+TGG | 0.491327 | 7_1:+63235970 | Msa1029740:three_prime_UTR |
| CATGTGCGACACATAGCATA+TGG | 0.492479 | 7_1:-63233661 | None:intergenic |
| TACCAGCTTGAAGAAGGTTG+TGG | 0.493797 | 7_1:-63233603 | None:intergenic |
| TATTGGTGTTCAGAATGATA+AGG | 0.494330 | 7_1:+63234612 | Msa1029740:CDS |
| TAAAATCCAATAGCCAAAGA+TGG | 0.496148 | 7_1:-63235355 | None:intergenic |
| AAGGTTATGGTCTAGCTGTT+GGG | 0.496723 | 7_1:+63233626 | Msa1029740:CDS |
| TGGCAATTCCTATAAATGTC+GGG | 0.498592 | 7_1:+63235688 | Msa1029740:exon |
| ATGAACCTTGTTAATGATGC+AGG | 0.501355 | 7_1:+63235649 | Msa1029740:CDS |
| CATATGCTATGTGTCGCACA+TGG | 0.515009 | 7_1:+63233662 | Msa1029740:CDS |
| ATCCACAACCTTCTTCAAGC+TGG | 0.518114 | 7_1:+63233601 | Msa1029740:CDS |
| GCAGAGGTGTCCAAGGAACT+AGG | 0.518806 | 7_1:-63233846 | None:intergenic |
| GAAACAACGTAAATAGCCAT+TGG | 0.522414 | 7_1:-63233739 | None:intergenic |
| ACGTAAATAGCCATTGGAAG+TGG | 0.527082 | 7_1:-63233733 | None:intergenic |
| GGAATCTTGGGAGGAAAACC+AGG | 0.527113 | 7_1:+63234574 | Msa1029740:CDS |
| GTTGACCATAAGGAAGCCTT+GGG | 0.529980 | 7_1:-63232707 | None:intergenic |
| GCTACAATATGAATTAAGTA+AGG | 0.537034 | 7_1:+63235710 | Msa1029740:three_prime_UTR |
| TGCCCGCCTCTTCAAAGGCA+GGG | 0.539052 | 7_1:+63232666 | Msa1029740:CDS |
| GACCCTGCCTTTGAAGAGGC+GGG | 0.540202 | 7_1:-63232668 | None:intergenic |
| TCAGGTGCCCGCCTCTTCAA+AGG | 0.542478 | 7_1:+63232661 | Msa1029740:CDS |
| TATACTAGTGATGTTAATTG+GGG | 0.543594 | 7_1:+63233163 | Msa1029740:CDS |
| CAATTCTGTAGCCAATAAAA+GGG | 0.545788 | 7_1:-63235935 | None:intergenic |
| CTGAGTATTATCAACAATCT+CGG | 0.546723 | 7_1:-63232642 | None:intergenic |
| GCTTAACTTCATGTGGATCA+AGG | 0.546867 | 7_1:-63234642 | None:intergenic |
| CTGGCAATTCCTATAAATGT+CGG | 0.547592 | 7_1:+63235687 | Msa1029740:exon |
| ATACATTTAACAGACCTTTG+CGG | 0.548501 | 7_1:-63233045 | None:intergenic |
| TATTCACTGTAGCTCAGTCT+AGG | 0.548706 | 7_1:+63235551 | Msa1029740:CDS |
| GCTGTGAGGAAAGTCGTTAG+TGG | 0.549234 | 7_1:+63232830 | Msa1029740:CDS |
| AGTCAAGCATCAACCGAACT+CGG | 0.552985 | 7_1:-63235766 | None:intergenic |
| AGGAGAACTGCCACTTCCAA+TGG | 0.553512 | 7_1:+63233723 | Msa1029740:CDS |
| ATTTGTTCATATGGCTAACC+AGG | 0.555159 | 7_1:+63235870 | Msa1029740:three_prime_UTR |
| AGACTCCTAACAGCATTAGC+AGG | 0.560789 | 7_1:+63235308 | Msa1029740:intron |
| AGCGTGTACTAGGGTCATGC+AGG | 0.568179 | 7_1:+63232876 | Msa1029740:CDS |
| CAGGCACCAATGAAGATGAC+TGG | 0.568826 | 7_1:+63235668 | Msa1029740:CDS |
| ACTGACGTTTCAAGCTCTGA+TGG | 0.572355 | 7_1:+63232899 | Msa1029740:CDS |
| TATTGGCTACAGAATTGTAG+TGG | 0.572874 | 7_1:+63235941 | Msa1029740:three_prime_UTR |
| GCATCAACCGAACTCGGCAG+TGG | 0.577325 | 7_1:-63235760 | None:intergenic |
| GCAACTATTTGGTGATTCCG+AGG | 0.577389 | 7_1:+63233564 | Msa1029740:CDS |
| GTTGTTTCTGGAGATGAAGA+CGG | 0.579696 | 7_1:+63233754 | Msa1029740:CDS |
| CGAGATTGTTGATAATACTC+AGG | 0.584823 | 7_1:+63232643 | Msa1029740:CDS |
| AATAAAAGCAGAGGTGTCCA+AGG | 0.588980 | 7_1:-63233853 | None:intergenic |
| TTCATTCTCGAAATAGTGGG+TGG | 0.591536 | 7_1:+63232801 | Msa1029740:CDS |
| TAGAGTAGTTCATATTGTGA+TGG | 0.592290 | 7_1:+63235993 | Msa1029740:three_prime_UTR |
| GATTTCAGGAGCGTGTACTA+GGG | 0.594031 | 7_1:+63232867 | Msa1029740:CDS |
| TGATCCACATGAAGTTAAGC+CGG | 0.594832 | 7_1:+63234645 | Msa1029740:CDS |
| CAGTTCATTCTCGAAATAGT+GGG | 0.596526 | 7_1:+63232798 | Msa1029740:CDS |
| ATAACGGCAAACCTTTGTCT+CGG | 0.597389 | 7_1:-63235381 | None:intergenic |
| TGGTGCCTGCATCATTAACA+AGG | 0.600444 | 7_1:-63235654 | None:intergenic |
| TAGTGATAGTAAGTTTCCCA+AGG | 0.604554 | 7_1:+63232691 | Msa1029740:CDS |
| CAGAGCCTTGGAATCTTGGG+AGG | 0.606666 | 7_1:+63234565 | Msa1029740:CDS |
| CCCAAGATTCCAAGGCTCTG+AGG | 0.607877 | 7_1:-63234562 | None:intergenic |
| AAGCTTGCAGAAGAATCAAA+CGG | 0.608695 | 7_1:+63235520 | Msa1029740:CDS |
| CAGAGGGAGAAGAATGAGCA+AGG | 0.610636 | 7_1:+63233703 | Msa1029740:CDS |
| AGACCCTGCCTTTGAAGAGG+CGG | 0.611555 | 7_1:-63232669 | None:intergenic |
| TGACGACACTAGATTTGAAG+AGG | 0.616064 | 7_1:+63235612 | Msa1029740:CDS |
| ACTAGACCCTGCCTTTGAAG+AGG | 0.621051 | 7_1:-63232672 | None:intergenic |
| CATACCGGCTTAACTTCATG+TGG | 0.621554 | 7_1:-63234649 | None:intergenic |
| TTTAATGTACAATAAATACC+TGG | 0.623565 | 7_1:-63235888 | None:intergenic |
| TTATCAAGTCCAAGAACCAA+AGG | 0.627304 | 7_1:-63233880 | None:intergenic |
| ATATTAATAACTTACCGCAA+AGG | 0.627695 | 7_1:+63233031 | Msa1029740:CDS |
| GATGAAGACGGAGAGCGAGG+TGG | 0.633026 | 7_1:+63233766 | Msa1029740:CDS |
| GATGGATCAATTGAATCTAG+GGG | 0.634509 | 7_1:-63235337 | None:intergenic |
| ATGGAGAAAATCTGTTGACA+AGG | 0.637899 | 7_1:+63233373 | Msa1029740:CDS |
| GGAGATGAAGACGGAGAGCG+AGG | 0.638450 | 7_1:+63233763 | Msa1029740:CDS |
| ATAATGTATGTCGAAGCACC+TGG | 0.644500 | 7_1:-63234592 | None:intergenic |
| TCATTCTCGAAATAGTGGGT+GGG | 0.651636 | 7_1:+63232802 | Msa1029740:CDS |
| GTGAGGAAAGTCGTTAGTGG+CGG | 0.662295 | 7_1:+63232833 | Msa1029740:CDS |
| AAAGGAACCAATAAAAGCAG+AGG | 0.666025 | 7_1:-63233862 | None:intergenic |
| TCGTTAGTGGCGGTTCAATG+AGG | 0.671495 | 7_1:+63232843 | Msa1029740:CDS |
| ACTATTTGGTGATTCCGAGG+CGG | 0.686375 | 7_1:+63233567 | Msa1029740:CDS |
| ATATGCTATGTGTCGCACAT+GGG | 0.694790 | 7_1:+63233663 | Msa1029740:CDS |
| GTGGGTGGGCAGCTGCTGTG+AGG | 0.740507 | 7_1:+63232816 | Msa1029740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAAAATGAATTAAGA+TGG | - | chr7_1:63231500-63231519 | None:intergenic | 10.0% |
| !!! | TTCAATATAAATTCTATTTT+GGG | + | chr7_1:63231608-63231627 | Msa1029740:intron | 10.0% |
| !!! | TTTTTTTTTTTTGTTTAAGA+TGG | + | chr7_1:63231791-63231810 | Msa1029740:intron | 10.0% |
| !! | CAAAATAGAATTTATATTGA+AGG | - | chr7_1:63231609-63231628 | None:intergenic | 15.0% |
| !!! | CTTCAATATAAATTCTATTT+TGG | + | chr7_1:63231607-63231626 | Msa1029740:intron | 15.0% |
| !!! | AAAAGATTCCTTTTTTTTTT+TGG | + | chr7_1:63231637-63231656 | Msa1029740:intron | 15.0% |
| !!! | AAAGATTCCTTTTTTTTTTT+GGG | + | chr7_1:63231638-63231657 | Msa1029740:intron | 15.0% |
| !! | TTTGAACAAACAATAAAATT+GGG | - | chr7_1:63231927-63231946 | None:intergenic | 15.0% |
| !!! | TTTTGAACAAACAATAAAAT+TGG | - | chr7_1:63231928-63231947 | None:intergenic | 15.0% |
| !! | AAAAGTCAAATTTATTGAAT+TGG | + | chr7_1:63231945-63231964 | Msa1029740:intron | 15.0% |
| !!! | TTTTAATATACATACCTTAT+AGG | + | chr7_1:63233115-63233134 | Msa1029740:intron | 15.0% |
| !!! | AAAAAAATTCAGAGATTTTA+AGG | - | chr7_1:63233281-63233300 | None:intergenic | 15.0% |
| !! | TGATTTAAAAACTATGATAA+AGG | - | chr7_1:63234061-63234080 | None:intergenic | 15.0% |
| !!! | TAATTGATAGTATAAGAAAA+GGG | - | chr7_1:63234169-63234188 | None:intergenic | 15.0% |
| !! | ATAAAAAAAAATGCTGAAAA+AGG | - | chr7_1:63234684-63234703 | None:intergenic | 15.0% |
| !! | AAGAAAACCCAAAAAAAAAA+AGG | - | chr7_1:63231648-63231667 | None:intergenic | 20.0% |
| !! | TTGAACAAACAATAAAATTG+GGG | - | chr7_1:63231926-63231945 | None:intergenic | 20.0% |
| !!! | TTAAATTGTAGGACATTTTT+AGG | + | chr7_1:63232065-63232084 | Msa1029740:intron | 20.0% |
| !!! | TAAATTGTAGGACATTTTTA+GGG | + | chr7_1:63232066-63232085 | Msa1029740:intron | 20.0% |
| !! | TAATAATCAGCTTATATGTT+TGG | + | chr7_1:63232463-63232482 | Msa1029740:intron | 20.0% |
| !! | TAAGGTATGTATATTAAAAC+TGG | - | chr7_1:63233114-63233133 | None:intergenic | 20.0% |
| !! | CACAAAAATAACAAAAACAA+AGG | - | chr7_1:63233448-63233467 | None:intergenic | 20.0% |
| !!! | GTAATTGATAGTATAAGAAA+AGG | - | chr7_1:63234170-63234189 | None:intergenic | 20.0% |
| !!! | AGTTTTGTTTAATTTACAAC+CGG | - | chr7_1:63234849-63234868 | None:intergenic | 20.0% |
| !! | ATCACTAAGTACATATTAAA+TGG | + | chr7_1:63235089-63235108 | Msa1029740:intron | 20.0% |
| !! | AACTAGTTATAGCAAAATAA+CGG | - | chr7_1:63235400-63235419 | None:intergenic | 20.0% |
| !! | TTTAATGTACAATAAATACC+TGG | - | chr7_1:63235891-63235910 | None:intergenic | 20.0% |
| !! | GATTTTCTTCTCAACTTTTA+AGG | - | chr7_1:63231347-63231366 | None:intergenic | 25.0% |
| !! | AGAGAATGATGAAGAAATTT+TGG | - | chr7_1:63231421-63231440 | None:intergenic | 25.0% |
| ! | TGGAAAATTGAAGAGAATAA+GGG | - | chr7_1:63231480-63231499 | None:intergenic | 25.0% |
| ! | ATGGAAAATTGAAGAGAATA+AGG | - | chr7_1:63231481-63231500 | None:intergenic | 25.0% |
| ! | AAATTTCATAAGAGCTTCAA+AGG | - | chr7_1:63231715-63231734 | None:intergenic | 25.0% |
| ! | TATTGAATTGGATCGAAATA+TGG | + | chr7_1:63231957-63231976 | Msa1029740:intron | 25.0% |
| ! | TTCTGTTTAGTGGTATATAT+AGG | + | chr7_1:63232007-63232026 | Msa1029740:intron | 25.0% |
| ! | AACCTACATGATTAAATTGT+AGG | + | chr7_1:63232054-63232073 | Msa1029740:intron | 25.0% |
| ! | AGATGTTATCTTTACACTAT+TGG | + | chr7_1:63232428-63232447 | Msa1029740:intron | 25.0% |
| ! | TATTGAAGGATTTATGTGAT+AGG | + | chr7_1:63232585-63232604 | Msa1029740:CDS | 25.0% |
| !! | ATTCATGCTGTGAAATTTTA+TGG | - | chr7_1:63232949-63232968 | None:intergenic | 25.0% |
| ! | ATATTAATAACTTACCGCAA+AGG | + | chr7_1:63233031-63233050 | Msa1029740:CDS | 25.0% |
| ! | AGTATACTAGTGATGTTAAT+TGG | + | chr7_1:63233161-63233180 | Msa1029740:CDS | 25.0% |
| ! | GTATACTAGTGATGTTAATT+GGG | + | chr7_1:63233162-63233181 | Msa1029740:CDS | 25.0% |
| ! | TATACTAGTGATGTTAATTG+GGG | + | chr7_1:63233163-63233182 | Msa1029740:CDS | 25.0% |
| !!! | GCATTACTTTTTCACAAATT+AGG | + | chr7_1:63233344-63233363 | Msa1029740:CDS | 25.0% |
| ! | TATTTATAATTTACAGCCAG+TGG | + | chr7_1:63233519-63233538 | Msa1029740:intron | 25.0% |
| ! | TCAATATATTCTTTATCCAC+TGG | - | chr7_1:63233538-63233557 | None:intergenic | 25.0% |
| ! | ACAAGCATAATCGTATAAAA+AGG | - | chr7_1:63233971-63233990 | None:intergenic | 25.0% |
| ! | TTGTGTAAAAGAATCCAAAT+AGG | - | chr7_1:63234010-63234029 | None:intergenic | 25.0% |
| !! | ATTCTTTTACACAATAGAAG+TGG | + | chr7_1:63234016-63234035 | Msa1029740:intron | 25.0% |
| ! | CAAATAAGCCAATATAAACA+TGG | + | chr7_1:63234079-63234098 | Msa1029740:intron | 25.0% |
| ! | GCAAATTTCCATGTTTATAT+TGG | - | chr7_1:63234090-63234109 | None:intergenic | 25.0% |
| ! | TTAAAAGTTGACTGCAATAA+AGG | - | chr7_1:63234538-63234557 | None:intergenic | 25.0% |
| ! | GGTTGTAAATTAAACAAAAC+TGG | + | chr7_1:63234848-63234867 | Msa1029740:intron | 25.0% |
| ! | AAAACTGGCATCATATATAA+AGG | + | chr7_1:63234863-63234882 | Msa1029740:intron | 25.0% |
| !! | AAAGAGAGTGCAATATATAA+AGG | + | chr7_1:63234892-63234911 | Msa1029740:intron | 25.0% |
| !! | GTACATATTAAATGGTTTTC+AGG | + | chr7_1:63235097-63235116 | Msa1029740:intron | 25.0% |
| !!! | TTTCAGGTTGTTAATATTAC+TGG | + | chr7_1:63235113-63235132 | Msa1029740:intron | 25.0% |
| !!! | TTCAGGTTGTTAATATTACT+GGG | + | chr7_1:63235114-63235133 | Msa1029740:intron | 25.0% |
| ! | CAAAAATCATCAAAATCATC+TGG | - | chr7_1:63235487-63235506 | None:intergenic | 25.0% |
| ! | GCTACAATATGAATTAAGTA+AGG | + | chr7_1:63235710-63235729 | Msa1029740:three_prime_UTR | 25.0% |
| ! | TGTTTACTCATTTGTTCATA+TGG | + | chr7_1:63235861-63235880 | Msa1029740:three_prime_UTR | 25.0% |
| !!! | AATTGTAGTGGATATTACTT+TGG | + | chr7_1:63235953-63235972 | Msa1029740:three_prime_UTR | 25.0% |
| AATTGAAGAGAATAAGGGAT+TGG | - | chr7_1:63231475-63231494 | None:intergenic | 30.0% | |
| TGGTATATATAGGATACCAA+AGG | + | chr7_1:63232017-63232036 | Msa1029740:intron | 30.0% | |
| GGTATATATAGGATACCAAA+GGG | + | chr7_1:63232018-63232037 | Msa1029740:intron | 30.0% | |
| GTATATATAGGATACCAAAG+GGG | + | chr7_1:63232019-63232038 | Msa1029740:intron | 30.0% | |
| GTCCTACAATTTAATCATGT+AGG | - | chr7_1:63232059-63232078 | None:intergenic | 30.0% | |
| !!! | TGTCTGGTTTTTAAGAAACA+TGG | - | chr7_1:63232108-63232127 | None:intergenic | 30.0% |
| TTAAAAACCAGACATGATTC+TGG | + | chr7_1:63232114-63232133 | Msa1029740:intron | 30.0% | |
| ! | ATGTTTACATTTGAAGTGTG+AGG | + | chr7_1:63232178-63232197 | Msa1029740:intron | 30.0% |
| GAATAGTTCAACTGGTTAAA+GGG | - | chr7_1:63232301-63232320 | None:intergenic | 30.0% | |
| AGAATAGTTCAACTGGTTAA+AGG | - | chr7_1:63232302-63232321 | None:intergenic | 30.0% | |
| TTCATCAATGCAGATTATGA+TGG | + | chr7_1:63232342-63232361 | Msa1029740:intron | 30.0% | |
| ! | CAGATTATGATGGCATTTTA+GGG | + | chr7_1:63232352-63232371 | Msa1029740:intron | 30.0% |
| CTGAGTATTATCAACAATCT+CGG | - | chr7_1:63232645-63232664 | None:intergenic | 30.0% | |
| TGAAAAACCAGATGTAAAGA+AGG | - | chr7_1:63232732-63232751 | None:intergenic | 30.0% | |
| ATACATTTAACAGACCTTTG+CGG | - | chr7_1:63233048-63233067 | None:intergenic | 30.0% | |
| CATCTAAACATCGCATAAAA+AGG | - | chr7_1:63233075-63233094 | None:intergenic | 30.0% | |
| TGAATATGACAAAGCAGTAT+TGG | - | chr7_1:63233323-63233342 | None:intergenic | 30.0% | |
| AATACTGCTTTGTCATATTC+AGG | + | chr7_1:63233322-63233341 | Msa1029740:intron | 30.0% | |
| TTCACAAATTAGGTAGATCA+TGG | + | chr7_1:63233354-63233373 | Msa1029740:CDS | 30.0% | |
| ATTGACATCTTGCAACTATT+TGG | + | chr7_1:63233553-63233572 | Msa1029740:CDS | 30.0% | |
| GACTTGATAAAGTCAATCTA+AGG | + | chr7_1:63233893-63233912 | Msa1029740:CDS | 30.0% | |
| GATAAAGGAACTTCTCTTTA+CGG | - | chr7_1:63234046-63234065 | None:intergenic | 30.0% | |
| ! | TTGATAGTATAAGAAAAGGG+TGG | - | chr7_1:63234166-63234185 | None:intergenic | 30.0% |
| ACTATCAATTACACCTGTTA+TGG | + | chr7_1:63234178-63234197 | Msa1029740:intron | 30.0% | |
| TTTGATTCAATGTCCATAAC+AGG | - | chr7_1:63234194-63234213 | None:intergenic | 30.0% | |
| TTAATAGATGTGTCTCTGTA+AGG | - | chr7_1:63234270-63234289 | None:intergenic | 30.0% | |
| ACAGAGACACATCTATTAAT+AGG | + | chr7_1:63234271-63234290 | Msa1029740:intron | 30.0% | |
| TACATAGCAGAGATAATAAC+CGG | + | chr7_1:63234365-63234384 | Msa1029740:intron | 30.0% | |
| TGCTATTATAAACTGTCTTC+AGG | + | chr7_1:63234506-63234525 | Msa1029740:intron | 30.0% | |
| ! | TATTGGTGTTCAGAATGATA+AGG | + | chr7_1:63234612-63234631 | Msa1029740:CDS | 30.0% |
| AAAAGGATTATCTTGCATAC+CGG | - | chr7_1:63234667-63234686 | None:intergenic | 30.0% | |
| AATTATCGTTATGCAAGTTC+TGG | + | chr7_1:63234717-63234736 | Msa1029740:intron | 30.0% | |
| TAGAAAAGACTACACAATGA+TGG | + | chr7_1:63234961-63234980 | Msa1029740:intron | 30.0% | |
| TTAAGTAACAACAAACAGCA+AGG | - | chr7_1:63235026-63235045 | None:intergenic | 30.0% | |
| ! | TCAGGTTGTTAATATTACTG+GGG | + | chr7_1:63235115-63235134 | Msa1029740:intron | 30.0% |
| ! | CAGTGATATGATGATGTATT+AGG | - | chr7_1:63235152-63235171 | None:intergenic | 30.0% |
| AGATGGATCAATTGAATCTA+GGG | - | chr7_1:63235341-63235360 | None:intergenic | 30.0% | |
| AAGATGGATCAATTGAATCT+AGG | - | chr7_1:63235342-63235361 | None:intergenic | 30.0% | |
| AGATTCAATTGATCCATCTT+TGG | + | chr7_1:63235342-63235361 | Msa1029740:CDS | 30.0% | |
| TAAAATCCAATAGCCAAAGA+TGG | - | chr7_1:63235358-63235377 | None:intergenic | 30.0% | |
| ! | TAACTAGTTTAATTGTAGCG+AGG | + | chr7_1:63235411-63235430 | Msa1029740:intron | 30.0% |
| ! | AATTACTTGTGACTTGCATT+GGG | - | chr7_1:63235582-63235601 | None:intergenic | 30.0% |
| TTGAACTCATTGTGATTCTT+TGG | + | chr7_1:63235831-63235850 | Msa1029740:three_prime_UTR | 30.0% | |
| !! | TTGTTGATGAACCCTTTTAT+TGG | + | chr7_1:63235924-63235943 | Msa1029740:three_prime_UTR | 30.0% |
| CAATTCTGTAGCCAATAAAA+GGG | - | chr7_1:63235938-63235957 | None:intergenic | 30.0% | |
| ACAATTCTGTAGCCAATAAA+AGG | - | chr7_1:63235939-63235958 | None:intergenic | 30.0% | |
| TAGAGTAGTTCATATTGTGA+TGG | + | chr7_1:63235993-63236012 | Msa1029740:three_prime_UTR | 30.0% | |
| ! | TTAACCTTTTCCATCAACGT+TGG | + | chr7_1:63231575-63231594 | Msa1029740:intron | 35.0% |
| ! | TAAACCAACGTTGATGGAAA+AGG | - | chr7_1:63231582-63231601 | None:intergenic | 35.0% |
| !!! | CACGAAAACTGTGTTTTTTC+AGG | + | chr7_1:63232155-63232174 | Msa1029740:intron | 35.0% |
| !!! | TGAGGATTTTAACTTGACCT+GGG | + | chr7_1:63232196-63232215 | Msa1029740:intron | 35.0% |
| ! | GCAGATTATGATGGCATTTT+AGG | + | chr7_1:63232351-63232370 | Msa1029740:intron | 35.0% |
| TGCAGATATTGACACAAACT+TGG | + | chr7_1:63232515-63232534 | Msa1029740:intron | 35.0% | |
| ! | GCCAAATTCTATGTTTTACG+TGG | + | chr7_1:63232551-63232570 | Msa1029740:five_prime_UTR | 35.0% |
| GCCACGTAAAACATAGAATT+TGG | - | chr7_1:63232555-63232574 | None:intergenic | 35.0% | |
| ! | TGTTTTACGTGGCTTCATAA+TGG | + | chr7_1:63232562-63232581 | Msa1029740:exon | 35.0% |
| ! | TGGCTTCATAATGGTATTGA+AGG | + | chr7_1:63232571-63232590 | Msa1029740:exon | 35.0% |
| !! | CGAGATTGTTGATAATACTC+AGG | + | chr7_1:63232643-63232662 | Msa1029740:CDS | 35.0% |
| TAGTGATAGTAAGTTTCCCA+AGG | + | chr7_1:63232691-63232710 | Msa1029740:CDS | 35.0% | |
| TGTAAAGAAGGTTGACCATA+AGG | - | chr7_1:63232720-63232739 | None:intergenic | 35.0% | |
| ACAGTTCATTCTCGAAATAG+TGG | + | chr7_1:63232797-63232816 | Msa1029740:CDS | 35.0% | |
| CAGTTCATTCTCGAAATAGT+GGG | + | chr7_1:63232798-63232817 | Msa1029740:CDS | 35.0% | |
| ATTTCACAGCATGAATCAAC+TGG | + | chr7_1:63232953-63232972 | Msa1029740:CDS | 35.0% | |
| !! | TTGGTAGTGTTAGTTCGAAA+GGG | - | chr7_1:63233304-63233323 | None:intergenic | 35.0% |
| !! | ATTGGTAGTGTTAGTTCGAA+AGG | - | chr7_1:63233305-63233324 | None:intergenic | 35.0% |
| ATGGAGAAAATCTGTTGACA+AGG | + | chr7_1:63233373-63233392 | Msa1029740:CDS | 35.0% | |
| GAAACAACGTAAATAGCCAT+TGG | - | chr7_1:63233742-63233761 | None:intergenic | 35.0% | |
| ! | ATGGCTATTTACGTTGTTTC+TGG | + | chr7_1:63233742-63233761 | Msa1029740:CDS | 35.0% |
| !! | AACGCTGTTTAGAGTTTTCA+AGG | + | chr7_1:63233821-63233840 | Msa1029740:CDS | 35.0% |
| !! | ACGCTGTTTAGAGTTTTCAA+GGG | + | chr7_1:63233822-63233841 | Msa1029740:CDS | 35.0% |
| AAAGGAACCAATAAAAGCAG+AGG | - | chr7_1:63233865-63233884 | None:intergenic | 35.0% | |
| !!! | TCTGCTTTTATTGGTTCCTT+TGG | + | chr7_1:63233864-63233883 | Msa1029740:CDS | 35.0% |
| !! | TTATTGGTTCCTTTGGTTCT+TGG | + | chr7_1:63233871-63233890 | Msa1029740:CDS | 35.0% |
| TTATCAAGTCCAAGAACCAA+AGG | - | chr7_1:63233883-63233902 | None:intergenic | 35.0% | |
| ! | TAAAGTCAATCTAAGGTGTG+TGG | + | chr7_1:63233900-63233919 | Msa1029740:intron | 35.0% |
| GTAAAAGAATCCAAATAGGC+AGG | - | chr7_1:63234006-63234025 | None:intergenic | 35.0% | |
| AAAGATAGAAACTTCCCTGT+CGG | + | chr7_1:63234211-63234230 | Msa1029740:intron | 35.0% | |
| ! | ACATCGAAATTTTACCGACA+GGG | - | chr7_1:63234228-63234247 | None:intergenic | 35.0% |
| ! | AACATCGAAATTTTACCGAC+AGG | - | chr7_1:63234229-63234248 | None:intergenic | 35.0% |
| CTCTCGTGATGTAATATGAT+TGG | + | chr7_1:63234315-63234334 | Msa1029740:intron | 35.0% | |
| TTTAAATTTCCTCAGAGCCT+TGG | + | chr7_1:63234553-63234572 | Msa1029740:CDS | 35.0% | |
| AAACAGCAAGGAAACCAAAT+AGG | - | chr7_1:63235014-63235033 | None:intergenic | 35.0% | |
| ! | TGTTCAGACTGTTGTTTGAT+AGG | + | chr7_1:63235053-63235072 | Msa1029740:intron | 35.0% |
| GATGGATCAATTGAATCTAG+GGG | - | chr7_1:63235340-63235359 | None:intergenic | 35.0% | |
| ATTGATCCATCTTTGGCTAT+TGG | + | chr7_1:63235349-63235368 | Msa1029740:CDS | 35.0% | |
| AAGCTTGCAGAAGAATCAAA+CGG | + | chr7_1:63235520-63235539 | Msa1029740:CDS | 35.0% | |
| ! | GAATTACTTGTGACTTGCAT+TGG | - | chr7_1:63235583-63235602 | None:intergenic | 35.0% |
| ATGAACCTTGTTAATGATGC+AGG | + | chr7_1:63235649-63235668 | Msa1029740:CDS | 35.0% | |
| CTGGCAATTCCTATAAATGT+CGG | + | chr7_1:63235687-63235706 | Msa1029740:exon | 35.0% | |
| TGGCAATTCCTATAAATGTC+GGG | + | chr7_1:63235688-63235707 | Msa1029740:exon | 35.0% | |
| TATTGTAGCCCGACATTTAT+AGG | - | chr7_1:63235699-63235718 | None:intergenic | 35.0% | |
| ATTTGTTCATATGGCTAACC+AGG | + | chr7_1:63235870-63235889 | Msa1029740:three_prime_UTR | 35.0% | |
| ! | TATTGGCTACAGAATTGTAG+TGG | + | chr7_1:63235941-63235960 | Msa1029740:three_prime_UTR | 35.0% |
| CTTTGGCAATGTCAAATAAG+TGG | + | chr7_1:63235970-63235989 | Msa1029740:three_prime_UTR | 35.0% | |
| ! | ATCGCGAATTGTTGTTGTTC+AGG | - | chr7_1:63231398-63231417 | None:intergenic | 40.0% |
| !! | TTTCGTCGTTTTCGTTGCAA+AGG | + | chr7_1:63231549-63231568 | Msa1029740:intron | 40.0% |
| TGTCGTATGCTTCTGTTTAG+TGG | + | chr7_1:63231997-63232016 | Msa1029740:intron | 40.0% | |
| !! | TCATGTAGGTTGACTTTTGC+CGG | - | chr7_1:63232045-63232064 | None:intergenic | 40.0% |
| TGTACTTCCAGAATCATGTC+TGG | - | chr7_1:63232124-63232143 | None:intergenic | 40.0% | |
| !!! | GTGAGGATTTTAACTTGACC+TGG | + | chr7_1:63232195-63232214 | Msa1029740:intron | 40.0% |
| !!! | TTTTAACTTGACCTGGGCTT+AGG | + | chr7_1:63232202-63232221 | Msa1029740:intron | 40.0% |
| !! | TTTAACTTGACCTGGGCTTA+GGG | + | chr7_1:63232203-63232222 | Msa1029740:intron | 40.0% |
| GCAACACAGAATAGTTCAAC+TGG | - | chr7_1:63232309-63232328 | None:intergenic | 40.0% | |
| TGGTCAACCTTCTTTACATC+TGG | + | chr7_1:63232722-63232741 | Msa1029740:CDS | 40.0% | |
| ! | TTCATTCTCGAAATAGTGGG+TGG | + | chr7_1:63232801-63232820 | Msa1029740:CDS | 40.0% |
| !! | TCATTCTCGAAATAGTGGGT+GGG | + | chr7_1:63232802-63232821 | Msa1029740:CDS | 40.0% |
| CAATTGCATCGAAGCCTATA+AGG | - | chr7_1:63233132-63233151 | None:intergenic | 40.0% | |
| GAAAATCTGTTGACAAGGTC+AGG | + | chr7_1:63233378-63233397 | Msa1029740:intron | 40.0% | |
| GCCTTTGTGTTGAGGTATAA+CGG | + | chr7_1:63233473-63233492 | Msa1029740:intron | 40.0% | |
| TGTTGAGGTATAACGGCATT+AGG | + | chr7_1:63233480-63233499 | Msa1029740:intron | 40.0% | |
| AACCTTCTTCAAGCTGGTAA+AGG | + | chr7_1:63233607-63233626 | Msa1029740:CDS | 40.0% | |
| AACCTTTACCAGCTTGAAGA+AGG | - | chr7_1:63233612-63233631 | None:intergenic | 40.0% | |
| CTTCAAGCTGGTAAAGGTTA+TGG | + | chr7_1:63233613-63233632 | Msa1029740:CDS | 40.0% | |
| AAAGGTTATGGTCTAGCTGT+TGG | + | chr7_1:63233625-63233644 | Msa1029740:CDS | 40.0% | |
| AAGGTTATGGTCTAGCTGTT+GGG | + | chr7_1:63233626-63233645 | Msa1029740:CDS | 40.0% | |
| ATATGCTATGTGTCGCACAT+GGG | + | chr7_1:63233663-63233682 | Msa1029740:CDS | 40.0% | |
| !!! | AAGTTTTAGCTCGAAACCAG+AGG | + | chr7_1:63233686-63233705 | Msa1029740:CDS | 40.0% |
| !!! | AGTTTTAGCTCGAAACCAGA+GGG | + | chr7_1:63233687-63233706 | Msa1029740:CDS | 40.0% |
| ACGTAAATAGCCATTGGAAG+TGG | - | chr7_1:63233736-63233755 | None:intergenic | 40.0% | |
| !! | GTTGTTTCTGGAGATGAAGA+CGG | + | chr7_1:63233754-63233773 | Msa1029740:CDS | 40.0% |
| AAACTCTAAACAGCGTTTGC+AGG | - | chr7_1:63233818-63233837 | None:intergenic | 40.0% | |
| !! | CGCTGTTTAGAGTTTTCAAG+GGG | + | chr7_1:63233823-63233842 | Msa1029740:CDS | 40.0% |
| !! | AATAAAAGCAGAGGTGTCCA+AGG | - | chr7_1:63233856-63233875 | None:intergenic | 40.0% |
| !! | TTGGACACCTCTGCTTTTAT+TGG | + | chr7_1:63233855-63233874 | Msa1029740:CDS | 40.0% |
| ! | TAAGGTGTGTGGCATTTTCA+AGG | + | chr7_1:63233911-63233930 | Msa1029740:intron | 40.0% |
| !! | GTGGCATTTTCAAGGTTCTA+TGG | + | chr7_1:63233919-63233938 | Msa1029740:intron | 40.0% |
| TAATGTGTTGCCTGCCTATT+TGG | + | chr7_1:63233993-63234012 | Msa1029740:intron | 40.0% | |
| AGAGATAATAACCGGTGTGA+TGG | + | chr7_1:63234373-63234392 | Msa1029740:intron | 40.0% | |
| ATTATGTGCATCCATCACAC+CGG | - | chr7_1:63234387-63234406 | None:intergenic | 40.0% | |
| ! | ATAATGTATGTCGAAGCACC+TGG | - | chr7_1:63234595-63234614 | None:intergenic | 40.0% |
| GGTGCTTCGACATACATTAT+TGG | + | chr7_1:63234595-63234614 | Msa1029740:CDS | 40.0% | |
| GCTTAACTTCATGTGGATCA+AGG | - | chr7_1:63234645-63234664 | None:intergenic | 40.0% | |
| TGATCCACATGAAGTTAAGC+CGG | + | chr7_1:63234645-63234664 | Msa1029740:CDS | 40.0% | |
| GCAAATGTGATAGCACTTAC+AGG | + | chr7_1:63234742-63234761 | Msa1029740:intron | 40.0% | |
| CTAAGTACCAATATGAGCAC+CGG | + | chr7_1:63234827-63234846 | Msa1029740:intron | 40.0% | |
| TTTACAACCGGTGCTCATAT+TGG | - | chr7_1:63234837-63234856 | None:intergenic | 40.0% | |
| ATAACGGCAAACCTTTGTCT+CGG | - | chr7_1:63235384-63235403 | None:intergenic | 40.0% | |
| GACTGAGCTACAGTGAATAA+TGG | - | chr7_1:63235550-63235569 | None:intergenic | 40.0% | |
| TATTCACTGTAGCTCAGTCT+AGG | + | chr7_1:63235551-63235570 | Msa1029740:CDS | 40.0% | |
| GTCACAAGTAATTCTGTGTC+AGG | + | chr7_1:63235589-63235608 | Msa1029740:CDS | 40.0% | |
| TGACGACACTAGATTTGAAG+AGG | + | chr7_1:63235612-63235631 | Msa1029740:CDS | 40.0% | |
| GAATTGCCAGTCATCTTCAT+TGG | - | chr7_1:63235677-63235696 | None:intergenic | 40.0% | |
| GCACTCTTCAAACGTTTAGT+AGG | + | chr7_1:63235797-63235816 | Msa1029740:three_prime_UTR | 40.0% | |
| TTCAGGTATGCGACTTCGTT+CGG | - | chr7_1:63231381-63231400 | None:intergenic | 45.0% | |
| !! | ATTGGTAGCGTACGTGGATA+AGG | - | chr7_1:63231457-63231476 | None:intergenic | 45.0% |
| GGCGTATAAACCAACGTTGA+TGG | - | chr7_1:63231588-63231607 | None:intergenic | 45.0% | |
| ATATAGGATACCAAAGGGGC+CGG | + | chr7_1:63232023-63232042 | Msa1029740:intron | 45.0% | |
| ! | TCTGGAAGTACACATCCAGA+TGG | + | chr7_1:63232132-63232151 | Msa1029740:intron | 45.0% |
| ! | AACACAGTTTTCGTGCCATC+TGG | - | chr7_1:63232150-63232169 | None:intergenic | 45.0% |
| ! | TTAACTTGACCTGGGCTTAG+GGG | + | chr7_1:63232204-63232223 | Msa1029740:intron | 45.0% |
| !! | TCAAGTTGGACTTCGAGTCA+AGG | + | chr7_1:63232250-63232269 | Msa1029740:intron | 45.0% |
| ! | CAAGTTGGACTTCGAGTCAA+GGG | + | chr7_1:63232251-63232270 | Msa1029740:intron | 45.0% |
| AAGTTGGACTTCGAGTCAAG+GGG | + | chr7_1:63232252-63232271 | Msa1029740:intron | 45.0% | |
| AGTTTCCCAAGGCTTCCTTA+TGG | + | chr7_1:63232702-63232721 | Msa1029740:CDS | 45.0% | |
| GTTGACCATAAGGAAGCCTT+GGG | - | chr7_1:63232710-63232729 | None:intergenic | 45.0% | |
| CGGTTCAATGAGGAGATTTC+AGG | + | chr7_1:63232853-63232872 | Msa1029740:CDS | 45.0% | |
| ! | AGATTTCAGGAGCGTGTACT+AGG | + | chr7_1:63232866-63232885 | Msa1029740:CDS | 45.0% |
| ! | GATTTCAGGAGCGTGTACTA+GGG | + | chr7_1:63232867-63232886 | Msa1029740:CDS | 45.0% |
| ! | ACTGACGTTTCAAGCTCTGA+TGG | + | chr7_1:63232899-63232918 | Msa1029740:CDS | 45.0% |
| ! | CAAGCTCTGATGGCGATATA+TGG | + | chr7_1:63232909-63232928 | Msa1029740:CDS | 45.0% |
| GATGGCGATATATGGCTTCT+AGG | + | chr7_1:63232917-63232936 | Msa1029740:CDS | 45.0% | |
| GCCGTTATACCTCAACACAA+AGG | - | chr7_1:63233477-63233496 | None:intergenic | 45.0% | |
| ! | GCAACTATTTGGTGATTCCG+AGG | + | chr7_1:63233564-63233583 | Msa1029740:CDS | 45.0% |
| ! | ACTATTTGGTGATTCCGAGG+CGG | + | chr7_1:63233567-63233586 | Msa1029740:CDS | 45.0% |
| ATCCACAACCTTCTTCAAGC+TGG | + | chr7_1:63233601-63233620 | Msa1029740:CDS | 45.0% | |
| TACCAGCTTGAAGAAGGTTG+TGG | - | chr7_1:63233606-63233625 | None:intergenic | 45.0% | |
| CATGTGCGACACATAGCATA+TGG | - | chr7_1:63233664-63233683 | None:intergenic | 45.0% | |
| CATATGCTATGTGTCGCACA+TGG | + | chr7_1:63233662-63233681 | Msa1029740:CDS | 45.0% | |
| GCATCTTCAATGCAGACAAC+TGG | - | chr7_1:63233796-63233815 | None:intergenic | 45.0% | |
| ! | GTTTTCCTCCCAAGATTCCA+AGG | - | chr7_1:63234573-63234592 | None:intergenic | 45.0% |
| !! | CATACCGGCTTAACTTCATG+TGG | - | chr7_1:63234652-63234671 | None:intergenic | 45.0% |
| ACACAATGATGGCCTAGTAG+TGG | + | chr7_1:63234972-63234991 | Msa1029740:intron | 45.0% | |
| AATGATGGCCTAGTAGTGGT+TGG | + | chr7_1:63234976-63234995 | Msa1029740:intron | 45.0% | |
| ATGATGGCCTAGTAGTGGTT+GGG | + | chr7_1:63234977-63234996 | Msa1029740:intron | 45.0% | |
| GGGAGGAGTGAAATCCTATT+TGG | + | chr7_1:63234997-63235016 | Msa1029740:intron | 45.0% | |
| TTTATGCTGACCCCCTTTAG+TGG | + | chr7_1:63235245-63235264 | Msa1029740:intron | 45.0% | |
| TTATGCTGACCCCCTTTAGT+GGG | + | chr7_1:63235246-63235265 | Msa1029740:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAAGG+GGG | - | chr7_1:63235258-63235277 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAAG+GGG | - | chr7_1:63235259-63235278 | None:intergenic | 45.0% |
| ! | CCAAGCCTTATCCCACTAAA+GGG | - | chr7_1:63235260-63235279 | None:intergenic | 45.0% |
| ! | ACCAAGCCTTATCCCACTAA+AGG | - | chr7_1:63235261-63235280 | None:intergenic | 45.0% |
| AGACTCCTAACAGCATTAGC+AGG | + | chr7_1:63235308-63235327 | Msa1029740:intron | 45.0% | |
| ATGTGCCTGCTAATGCTGTT+AGG | - | chr7_1:63235316-63235335 | None:intergenic | 45.0% | |
| ! | GGATTTTACTGCCGAGACAA+AGG | + | chr7_1:63235370-63235389 | Msa1029740:CDS | 45.0% |
| TTCTGCAAGCTTAGTTGCTC+GGG | - | chr7_1:63235512-63235531 | None:intergenic | 45.0% | |
| CTTCTGCAAGCTTAGTTGCT+CGG | - | chr7_1:63235513-63235532 | None:intergenic | 45.0% | |
| TGGTGCCTGCATCATTAACA+AGG | - | chr7_1:63235657-63235676 | None:intergenic | 45.0% | |
| TTGTTTACCACTGCCGAGTT+CGG | + | chr7_1:63235753-63235772 | Msa1029740:three_prime_UTR | 45.0% | |
| AGTCAAGCATCAACCGAACT+CGG | - | chr7_1:63235769-63235788 | None:intergenic | 45.0% | |
| !! | TAAGGGATTGGTAGCGTACG+TGG | - | chr7_1:63231463-63231482 | None:intergenic | 50.0% |
| GCGAGGGATGATCATCAAGT+TGG | + | chr7_1:63232236-63232255 | Msa1029740:intron | 50.0% | |
| AGTTGGACTTCGAGTCAAGG+GGG | + | chr7_1:63232253-63232272 | Msa1029740:intron | 50.0% | |
| GGGGGATGGAAAGTCTCATT+TGG | + | chr7_1:63232273-63232292 | Msa1029740:intron | 50.0% | |
| ! | ACTAGACCCTGCCTTTGAAG+AGG | - | chr7_1:63232675-63232694 | None:intergenic | 50.0% |
| GGTTGACCATAAGGAAGCCT+TGG | - | chr7_1:63232711-63232730 | None:intergenic | 50.0% | |
| GCTGTGAGGAAAGTCGTTAG+TGG | + | chr7_1:63232830-63232849 | Msa1029740:CDS | 50.0% | |
| GTGAGGAAAGTCGTTAGTGG+CGG | + | chr7_1:63232833-63232852 | Msa1029740:CDS | 50.0% | |
| TCGTTAGTGGCGGTTCAATG+AGG | + | chr7_1:63232843-63232862 | Msa1029740:CDS | 50.0% | |
| ! | CAGTCAGATGCTTGTTGCTC+AGG | + | chr7_1:63233201-63233220 | Msa1029740:CDS | 50.0% |
| GTGTTTGCGCCTTTGTGTTG+AGG | + | chr7_1:63233465-63233484 | Msa1029740:intron | 50.0% | |
| GATAGAAAAAGCAGCCGCCT+CGG | - | chr7_1:63233584-63233603 | None:intergenic | 50.0% | |
| ATGGTCTAGCTGTTGGGTCA+TGG | + | chr7_1:63233632-63233651 | Msa1029740:CDS | 50.0% | |
| TGGTCTAGCTGTTGGGTCAT+GGG | + | chr7_1:63233633-63233652 | Msa1029740:CDS | 50.0% | |
| CTTGCTCATTCTTCTCCCTC+TGG | - | chr7_1:63233705-63233724 | None:intergenic | 50.0% | |
| CAGAGGGAGAAGAATGAGCA+AGG | + | chr7_1:63233703-63233722 | Msa1029740:CDS | 50.0% | |
| ! | AGGAGAACTGCCACTTCCAA+TGG | + | chr7_1:63233723-63233742 | Msa1029740:CDS | 50.0% |
| TTTCAAGGGGCCTAGTTCCT+TGG | + | chr7_1:63233836-63233855 | Msa1029740:CDS | 50.0% | |
| GTGTCTCTGTAAGGCAGATG+AGG | - | chr7_1:63234261-63234280 | None:intergenic | 50.0% | |
| TCCTCAGAGCCTTGGAATCT+TGG | + | chr7_1:63234561-63234580 | Msa1029740:CDS | 50.0% | |
| CCTCAGAGCCTTGGAATCTT+GGG | + | chr7_1:63234562-63234581 | Msa1029740:CDS | 50.0% | |
| GGAATCTTGGGAGGAAAACC+AGG | + | chr7_1:63234574-63234593 | Msa1029740:CDS | 50.0% | |
| TGACCCCCTTTAGTGGGATA+AGG | + | chr7_1:63235252-63235271 | Msa1029740:intron | 50.0% | |
| CCCTTTAGTGGGATAAGGCT+TGG | + | chr7_1:63235257-63235276 | Msa1029740:intron | 50.0% | |
| CAGGCACCAATGAAGATGAC+TGG | + | chr7_1:63235668-63235687 | Msa1029740:CDS | 50.0% | |
| ! | TTGACTTTTGCCGGCCCCTT+TGG | - | chr7_1:63232036-63232055 | None:intergenic | 55.0% |
| ! | CCTGGGCTTAGGGGATTTTG+CGG | + | chr7_1:63232213-63232232 | Msa1029740:intron | 55.0% |
| ! | CTGGGCTTAGGGGATTTTGC+GGG | + | chr7_1:63232214-63232233 | Msa1029740:intron | 55.0% |
| ! | TTAGGGGATTTTGCGGGCGA+GGG | + | chr7_1:63232220-63232239 | Msa1029740:intron | 55.0% |
| GTTGGACTTCGAGTCAAGGG+GGG | + | chr7_1:63232254-63232273 | Msa1029740:intron | 55.0% | |
| TTGGACTTCGAGTCAAGGGG+GGG | + | chr7_1:63232255-63232274 | Msa1029740:intron | 55.0% | |
| ! | AGACCCTGCCTTTGAAGAGG+CGG | - | chr7_1:63232672-63232691 | None:intergenic | 55.0% |
| AGCGTGTACTAGGGTCATGC+AGG | + | chr7_1:63232876-63232895 | Msa1029740:CDS | 55.0% | |
| TCTAGCTGTTGGGTCATGGG+TGG | + | chr7_1:63233636-63233655 | Msa1029740:CDS | 55.0% | |
| CTAGCTGTTGGGTCATGGGT+GGG | + | chr7_1:63233637-63233656 | Msa1029740:CDS | 55.0% | |
| TAGCTGTTGGGTCATGGGTG+GGG | + | chr7_1:63233638-63233657 | Msa1029740:CDS | 55.0% | |
| !! | GCAGAGGTGTCCAAGGAACT+AGG | - | chr7_1:63233849-63233868 | None:intergenic | 55.0% |
| CCCAAGATTCCAAGGCTCTG+AGG | - | chr7_1:63234565-63234584 | None:intergenic | 55.0% | |
| CAGAGCCTTGGAATCTTGGG+AGG | + | chr7_1:63234565-63234584 | Msa1029740:CDS | 55.0% | |
| ATGGCCTAGTAGTGGTTGGG+AGG | + | chr7_1:63234980-63234999 | Msa1029740:intron | 55.0% | |
| CACTCCTCCCAACCACTACT+AGG | - | chr7_1:63234987-63235006 | None:intergenic | 55.0% | |
| CCGCAAAATCCCCTAAGCCC+AGG | - | chr7_1:63232216-63232235 | None:intergenic | 60.0% | |
| ! | CTTAGGGGATTTTGCGGGCG+AGG | + | chr7_1:63232219-63232238 | Msa1029740:intron | 60.0% |
| ACTTCGAGTCAAGGGGGGGA+TGG | + | chr7_1:63232259-63232278 | Msa1029740:intron | 60.0% | |
| TCAGGTGCCCGCCTCTTCAA+AGG | + | chr7_1:63232661-63232680 | Msa1029740:CDS | 60.0% | |
| TGCCCGCCTCTTCAAAGGCA+GGG | + | chr7_1:63232666-63232685 | Msa1029740:CDS | 60.0% | |
| ! | GACCCTGCCTTTGAAGAGGC+GGG | - | chr7_1:63232671-63232690 | None:intergenic | 60.0% |
| GGAGATGAAGACGGAGAGCG+AGG | + | chr7_1:63233763-63233782 | Msa1029740:CDS | 60.0% | |
| GATGAAGACGGAGAGCGAGG+TGG | + | chr7_1:63233766-63233785 | Msa1029740:CDS | 60.0% | |
| GCATCAACCGAACTCGGCAG+TGG | - | chr7_1:63235763-63235782 | None:intergenic | 60.0% | |
| GTGCCCGCCTCTTCAAAGGC+AGG | + | chr7_1:63232665-63232684 | Msa1029740:CDS | 65.0% | |
| GTGGGTGGGCAGCTGCTGTG+AGG | + | chr7_1:63232816-63232835 | Msa1029740:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 63231305 | 63236061 | 63231305 | ID=Msa1029740;Name=Msa1029740 |
| chr7_1 | mRNA | 63231305 | 63236061 | 63231305 | ID=Msa1029740-mRNA-1;Parent=Msa1029740;Name=Msa1029740-mRNA-1;_AED=0.10;_eAED=0.10;_QI=220|0.85|0.87|1|0.85|0.75|8|359|474 |
| chr7_1 | exon | 63231305 | 63231463 | 63231305 | ID=Msa1029740-mRNA-1:exon:13686;Parent=Msa1029740-mRNA-1 |
| chr7_1 | exon | 63232520 | 63233052 | 63232520 | ID=Msa1029740-mRNA-1:exon:13687;Parent=Msa1029740-mRNA-1 |
| chr7_1 | exon | 63233137 | 63233222 | 63233137 | ID=Msa1029740-mRNA-1:exon:13688;Parent=Msa1029740-mRNA-1 |
| chr7_1 | exon | 63233344 | 63233394 | 63233344 | ID=Msa1029740-mRNA-1:exon:13689;Parent=Msa1029740-mRNA-1 |
| chr7_1 | exon | 63233535 | 63233914 | 63233535 | ID=Msa1029740-mRNA-1:exon:13690;Parent=Msa1029740-mRNA-1 |
| chr7_1 | exon | 63234528 | 63234666 | 63234528 | ID=Msa1029740-mRNA-1:exon:13691;Parent=Msa1029740-mRNA-1 |
| chr7_1 | exon | 63235310 | 63235391 | 63235310 | ID=Msa1029740-mRNA-1:exon:13692;Parent=Msa1029740-mRNA-1 |
| chr7_1 | exon | 63235488 | 63236061 | 63235488 | ID=Msa1029740-mRNA-1:exon:13693;Parent=Msa1029740-mRNA-1 |
| chr7_1 | five_prime_UTR | 63231305 | 63231463 | 63231305 | ID=Msa1029740-mRNA-1:five_prime_utr;Parent=Msa1029740-mRNA-1 |
| chr7_1 | five_prime_UTR | 63232520 | 63232580 | 63232520 | ID=Msa1029740-mRNA-1:five_prime_utr;Parent=Msa1029740-mRNA-1 |
| chr7_1 | CDS | 63232581 | 63233052 | 63232581 | ID=Msa1029740-mRNA-1:cds;Parent=Msa1029740-mRNA-1 |
| chr7_1 | CDS | 63233137 | 63233222 | 63233137 | ID=Msa1029740-mRNA-1:cds;Parent=Msa1029740-mRNA-1 |
| chr7_1 | CDS | 63233344 | 63233394 | 63233344 | ID=Msa1029740-mRNA-1:cds;Parent=Msa1029740-mRNA-1 |
| chr7_1 | CDS | 63233535 | 63233914 | 63233535 | ID=Msa1029740-mRNA-1:cds;Parent=Msa1029740-mRNA-1 |
| chr7_1 | CDS | 63234528 | 63234666 | 63234528 | ID=Msa1029740-mRNA-1:cds;Parent=Msa1029740-mRNA-1 |
| chr7_1 | CDS | 63235310 | 63235391 | 63235310 | ID=Msa1029740-mRNA-1:cds;Parent=Msa1029740-mRNA-1 |
| chr7_1 | CDS | 63235488 | 63235702 | 63235488 | ID=Msa1029740-mRNA-1:cds;Parent=Msa1029740-mRNA-1 |
| chr7_1 | three_prime_UTR | 63235703 | 63236061 | 63235703 | ID=Msa1029740-mRNA-1:three_prime_utr;Parent=Msa1029740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
