AlfalfaGEDB | Msa0667770

M. sativa cultivar zhongmu-4 / Msa0667770

KEGG: -
GO: GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0035064 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0097159 GO:0140030 GO:0140034 GO:1901363
PFAM: PF12165.11

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0667770	XP_013454830.1	100.000	240	0	0	1	240	1	240	4.81e-178	498

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0667770	sp\|Q9FFF5\|ALFL1_ARATH	77.637	237	51	2	4	239	5	240	4.39e-119	342

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0667770	A0A072UGM4	100.000	240	0	0	1	240	1	240	2.30e-178	498

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TFs/TRs:

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Gene ID	Type	Classification
Msa0667770	TF	Alfin-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002680	Msa0667770	0.813341	2.688433e-51	-8.615850e-47
Msa0002710	Msa0667770	0.822600	2.171548e-53	-8.615850e-47
Msa0003400	Msa0667770	0.822964	1.786622e-53	-8.615850e-47
Msa0003890	Msa0667770	0.816492	5.379539e-52	-8.615850e-47
Msa0005270	Msa0667770	0.809476	1.856673e-50	-8.615850e-47
Msa0006110	Msa0667770	0.845172	4.791836e-59	-8.615850e-47
Msa0007440	Msa0667770	0.810796	9.647588e-51	-8.615850e-47
Msa0007990	Msa0667770	0.818960	1.492355e-52	-8.615850e-47
Msa0008220	Msa0667770	0.804086	2.556773e-49	-8.615850e-47
Msa0010490	Msa0667770	0.817168	3.792669e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0667770	MtrunA17_Chr4g0006381	99.174	242	0	1	1	240	1	242	9.75e-180	492
Msa0667770	MtrunA17_Chr7g0242511	92.149	242	17	2	1	240	1	242	2.89e-146	408
Msa0667770	MtrunA17_Chr4g0076771	62.948	251	81	6	1	239	4	254	1.58e-91	270
Msa0667770	MtrunA17_Chr8g0343441	60.241	249	85	5	6	240	8	256	1.99e-91	270
Msa0667770	MtrunA17_Chr2g0329821	60.400	250	86	4	3	239	1	250	1.13e-88	262
Msa0667770	MtrunA17_Chr2g0300241	59.055	254	89	6	1	240	1	253	7.65e-88	260
Msa0667770	MtrunA17_Chr1g0150821	59.216	255	84	4	6	240	9	263	7.25e-86	256

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0667770	AT5G05610.2	77.637	237	51	2	4	239	5	240	4.47e-120	342
Msa0667770	AT5G05610.1	77.637	237	51	2	4	239	5	240	4.47e-120	342
Msa0667770	AT3G11200.1	76.667	240	53	3	3	239	6	245	1.20e-112	323
Msa0667770	AT3G11200.2	76.442	208	46	3	35	239	25	232	6.98e-96	280
Msa0667770	AT3G42790.1	63.485	241	81	4	6	239	9	249	2.09e-95	280
Msa0667770	AT5G20510.1	59.127	252	86	3	6	240	9	260	2.10e-91	270
Msa0667770	AT2G02470.1	60.484	248	84	3	7	240	9	256	1.16e-89	265
Msa0667770	AT2G02470.2	61.826	241	83	4	7	240	9	247	4.85e-89	263
Msa0667770	AT1G14510.1	60.417	240	86	4	7	237	9	248	3.75e-85	254
Msa0667770	AT5G26210.1	58.233	249	91	3	4	239	6	254	5.24e-81	243

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Find 118 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTAGGGTTATATGGAAA+TGG	0.439714	4_4:+8369478	Msa0667770:exon
AAATTTGTCTCCTCTTATTG+AGG	0.420091	4_4:+8372667	Msa0667770:three_prime_UTR
AACTGACAGGAAGCCAATAA+AGG	0.424689	4_4:+8371639	Msa0667770:CDS
AAGAGAGAGAAGACTATGGT+TGG	0.455773	4_4:-8369293	None:intergenic
AAGATCTCTTCAACGGTACG+AGG	0.622170	4_4:-8369509	None:intergenic
AAGGACAATTTGTGTCTCTA+TGG	0.371740	4_4:+8370782	Msa0667770:CDS
AAGGCTATGTCTTATGTACC+AGG	0.593544	4_4:+8372934	Msa0667770:three_prime_UTR
AAGGGATGGCATGAATCGTA+GGG	0.619740	4_4:+8370892	Msa0667770:CDS
AAGTTTCAACAGTTAGCATT+TGG	0.423483	4_4:-8372892	None:intergenic
AATACTTTGTTGATGCTGAC+CGG	0.507847	4_4:+8372524	Msa0667770:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATCTCAAATTAGGGTTATA+TGG	+	chr4_4:8369472-8369491	Msa0667770:exon	30.0%
CCAAATCAAAATCCAAAAAC+TGG	-	chr4_4:8370612-8370631	None:intergenic	30.0%
GGAAATGCTCTTAGTTATTA+TGG	+	chr4_4:8370678-8370697	Msa0667770:intron	30.0%
ATGGACATACAAATGAATCA+TGG	+	chr4_4:8370801-8370820	Msa0667770:CDS	30.0%
TGGACATACAAATGAATCAT+GGG	+	chr4_4:8370802-8370821	Msa0667770:CDS	30.0%
ATATGTATTCCTTGGATTGA+TGG	+	chr4_4:8371228-8371247	Msa0667770:intron	30.0%
TATGTATTCCTTGGATTGAT+GGG	+	chr4_4:8371229-8371248	Msa0667770:intron	30.0%
TCTGGGAAATAAAATTGTCT+TGG	-	chr4_4:8371255-8371274	None:intergenic	30.0%
ACTATTTGTATGGTAGAATG+TGG	+	chr4_4:8371444-8371463	Msa0667770:intron	30.0%
CAAAGCAGTTGAGAAAAAAA+TGG	-	chr4_4:8371515-8371534	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	8369275	8373240	8369275	ID=Msa0667770;Name=Msa0667770
chr4_4	mRNA	8369275	8373240	8369275	ID=Msa0667770-mRNA-1;Parent=Msa0667770;Name=Msa0667770-mRNA-1;_AED=0.03;_eAED=0.03;_QI=216\|1\|1\|1\|1\|1\|5\|742\|240
chr4_4	exon	8369275	8369581	8369275	ID=Msa0667770-mRNA-1:exon:2697;Parent=Msa0667770-mRNA-1
chr4_4	exon	8369689	8369721	8369689	ID=Msa0667770-mRNA-1:exon:2698;Parent=Msa0667770-mRNA-1
chr4_4	exon	8370780	8371002	8370780	ID=Msa0667770-mRNA-1:exon:2699;Parent=Msa0667770-mRNA-1
chr4_4	exon	8371588	8371708	8371588	ID=Msa0667770-mRNA-1:exon:2700;Parent=Msa0667770-mRNA-1
chr4_4	exon	8372244	8373240	8372244	ID=Msa0667770-mRNA-1:exon:2701;Parent=Msa0667770-mRNA-1
chr4_4	five_prime_UTR	8369275	8369490	8369275	ID=Msa0667770-mRNA-1:five_prime_utr;Parent=Msa0667770-mRNA-1
chr4_4	CDS	8369491	8369581	8369491	ID=Msa0667770-mRNA-1:cds;Parent=Msa0667770-mRNA-1
chr4_4	CDS	8369689	8369721	8369689	ID=Msa0667770-mRNA-1:cds;Parent=Msa0667770-mRNA-1
chr4_4	CDS	8370780	8371002	8370780	ID=Msa0667770-mRNA-1:cds;Parent=Msa0667770-mRNA-1
chr4_4	CDS	8371588	8371708	8371588	ID=Msa0667770-mRNA-1:cds;Parent=Msa0667770-mRNA-1
chr4_4	CDS	8372244	8372498	8372244	ID=Msa0667770-mRNA-1:cds;Parent=Msa0667770-mRNA-1
chr4_4	three_prime_UTR	8372499	8373240	8372499	ID=Msa0667770-mRNA-1:three_prime_utr;Parent=Msa0667770-mRNA-1

Gene Sequence

>Msa0667770

ATGGAAATGGCGTCAAGTCCTCGTACCGTTGAAGAGATCTTCAAAGATTTCAGTTCTCGTAGAGATGGTATCGTTCGTGCTTTAACTCAAGATGTTGATGAATTTTATGCACTCTGTGATCCAGATAAGGACAATTTGTGTCTCTATGGACATACAAATGAATCATGGGAGGTTACTCTTCCTGCTGAGGAAGTTCCACCTGAGCTTCCAGAGCCAGCTCTTGGAATCAATTTTGCAAGGGATGGCATGAATCGTAGGGACTGGCTTTCCCTGGTTGCTGTGCACAGTGATTCATGGTTGCTTTCTGTGGCTTTTTATCTTGGAGCTCGTCTTAACCGCAATGAAAGGAAACGCTTATTTAGCTTGATCAATGAGCTTCCAACTGTGTTTGAAGTTGTAACTGACAGGAAGCCAATAAAGGACAAGCCCACTGTAGATAGTGGAAGCAAATCTCGGGGCAGCACCAAGAGATCAAGTGATGGACAAGTTAAAAGCAACCCGAAGTTGGTAGATGATCAAGGTTATGAGGAGGAAGAAGACGAGCATAGCGAAACCCTTTGTGGGAGCTGCGGCGGAAACTACAACGCAGATGAATTTTGGATTGGCTGTGATATTTGTGAGAGGTGGTATCATGGAAAATGTGTGAAGATTACTCCTGCTAAAGCTGAGAGCATAAAGCAATACAAGTGCCCATCATGCAGCATCAAGAGGGGCAGGCCCTAA

Protein sequence

>Msa0667770

MEMASSPRTVEEIFKDFSSRRDGIVRALTQDVDEFYALCDPDKDNLCLYGHTNESWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINELPTVFEVVTDRKPIKDKPTVDSGSKSRGSTKRSSDGQVKSNPKLVDDQGYEEEEDEHSETLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPSCSIKRGRP*