Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373350 | XP_003601798.1 | 97.802 | 182 | 4 | 0 | 1 | 182 | 1 | 182 | 7.37e-131 | 374 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373350 | sp|P51413|RL172_ARATH | 88.000 | 175 | 21 | 0 | 1 | 175 | 1 | 175 | 1.03e-114 | 326 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373350 | G7JC06 | 97.802 | 182 | 4 | 0 | 1 | 182 | 1 | 182 | 3.52e-131 | 374 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001390 | Msa0373350 | 0.819338 | 1.223686e-52 | -8.615850e-47 |
| Msa0003030 | Msa0373350 | 0.874836 | 4.944251e-68 | -8.615850e-47 |
| Msa0004760 | Msa0373350 | 0.819909 | 9.066364e-53 | -8.615850e-47 |
| Msa0042510 | Msa0373350 | 0.859763 | 3.301893e-63 | -8.615850e-47 |
| Msa0079560 | Msa0373350 | 0.881882 | 1.658710e-70 | -8.615850e-47 |
| Msa0086160 | Msa0373350 | 0.826833 | 2.183005e-54 | -8.615850e-47 |
| Msa0089910 | Msa0373350 | 0.844846 | 5.869196e-59 | -8.615850e-47 |
| Msa0127230 | Msa0373350 | 0.882464 | 1.019512e-70 | -8.615850e-47 |
| Msa0136220 | Msa0373350 | 0.823201 | 1.573244e-53 | -8.615850e-47 |
| Msa0146910 | Msa0373350 | 0.873095 | 1.917769e-67 | -8.615850e-47 |
| Msa0172300 | Msa0373350 | 0.830082 | 3.588455e-55 | -8.615850e-47 |
| Msa0179160 | Msa0373350 | 0.841336 | 5.054393e-58 | -8.615850e-47 |
| Msa0182100 | Msa0373350 | 0.833837 | 4.238755e-56 | -8.615850e-47 |
| Msa0188740 | Msa0373350 | 0.800534 | 1.378051e-48 | -8.615850e-47 |
| Msa0192300 | Msa0373350 | 0.803117 | 4.063118e-49 | -8.615850e-47 |
| Msa0371490 | Msa0373350 | 0.817555 | 3.103282e-52 | -8.615850e-47 |
| Msa0373350 | Msa0376850 | 0.860960 | 1.434708e-63 | -8.615850e-47 |
| Msa0373350 | Msa0377610 | 0.859078 | 5.303332e-63 | -8.615850e-47 |
| Msa0373350 | Msa0387290 | 0.801916 | 7.182709e-49 | -8.615850e-47 |
| Msa0373350 | Msa0388520 | 0.861725 | 8.381196e-64 | -8.615850e-47 |
| Msa0373350 | Msa0388540 | 0.820553 | 6.456047e-53 | -8.615850e-47 |
| Msa0373350 | Msa0421920 | 0.979917 | 4.950510e-149 | -8.615850e-47 |
| Msa0373350 | Msa0426820 | 0.840640 | 7.700281e-58 | -8.615850e-47 |
| Msa0373350 | Msa0426940 | 0.829380 | 5.316976e-55 | -8.615850e-47 |
| Msa0373350 | Msa0427380 | 0.838723 | 2.427816e-57 | -8.615850e-47 |
| Msa0373350 | Msa0467740 | 0.922113 | 1.499572e-88 | -8.615850e-47 |
| Msa0373350 | Msa0511760 | 0.848436 | 6.138129e-60 | -8.615850e-47 |
| Msa0373350 | Msa0514130 | 0.927438 | 1.175774e-91 | -8.615850e-47 |
| Msa0373350 | Msa0516830 | 0.861438 | 1.025691e-63 | -8.615850e-47 |
| Msa0373350 | Msa0521730 | 0.810289 | 1.241072e-50 | -8.615850e-47 |
| Msa0373350 | Msa0524340 | 0.887366 | 1.520685e-72 | -8.615850e-47 |
| Msa0373350 | Msa0524450 | 0.833143 | 6.315188e-56 | -8.615850e-47 |
| Msa0373350 | Msa0574780 | 0.835565 | 1.558113e-56 | -8.615850e-47 |
| Msa0373350 | Msa0578010 | 0.877018 | 8.796459e-69 | -8.615850e-47 |
| Msa0373350 | Msa0601130 | 0.814885 | 1.226616e-51 | -8.615850e-47 |
| Msa0373350 | Msa0609120 | 0.842025 | 3.326172e-58 | -8.615850e-47 |
| Msa0373350 | Msa0619230 | 0.826768 | 2.263064e-54 | -8.615850e-47 |
| Msa0373350 | Msa0621190 | 0.873906 | 1.022717e-67 | -8.615850e-47 |
| Msa0373350 | Msa0656450 | 0.899721 | 1.497274e-77 | -8.615850e-47 |
| Msa0373350 | Msa0691760 | 0.865116 | 7.456449e-65 | -8.615850e-47 |
| Msa0373350 | Msa0700370 | 0.860422 | 2.088764e-63 | -8.615850e-47 |
| Msa0373350 | Msa0826610 | 0.839564 | 1.469408e-57 | -8.615850e-47 |
| Msa0373350 | Msa0864660 | 0.837210 | 5.945048e-57 | -8.615850e-47 |
| Msa0373350 | Msa0930360 | 0.836219 | 1.063816e-56 | -8.615850e-47 |
| Msa0373350 | Msa0930790 | 0.803964 | 2.710791e-49 | -8.615850e-47 |
| Msa0373350 | Msa0998890 | 0.802802 | 4.719895e-49 | -8.615850e-47 |
| Msa0373350 | Msa1013430 | 0.805759 | 1.143096e-49 | -8.615850e-47 |
| Msa0373350 | Msa1027870 | 0.833109 | 6.439473e-56 | -8.615850e-47 |
| Msa0373350 | Msa1030020 | 0.801978 | 6.976021e-49 | -8.615850e-47 |
| Msa0373350 | Msa1035040 | 0.821167 | 4.662137e-53 | -8.615850e-47 |
| Msa0373350 | Msa1082050 | 0.825122 | 5.568147e-54 | -8.615850e-47 |
| Msa0373350 | Msa1084850 | 0.829311 | 5.526925e-55 | -8.615850e-47 |
| Msa0373350 | Msa1085850 | 0.808255 | 3.387855e-50 | -8.615850e-47 |
| Msa0373350 | Msa1126690 | 0.810236 | 1.274107e-50 | -8.615850e-47 |
| Msa0373350 | Msa1130680 | 0.828582 | 8.300074e-55 | -8.615850e-47 |
| Msa0373350 | Msa1144630 | 0.832682 | 8.221658e-56 | -8.615850e-47 |
| Msa0373350 | Msa1165210 | 0.860855 | 1.543567e-63 | -8.615850e-47 |
| Msa0373350 | Msa1165700 | 0.876517 | 1.311780e-68 | -8.615850e-47 |
| Msa0373350 | Msa1227350 | 0.893611 | 5.349025e-75 | -8.615850e-47 |
| Msa0373350 | Msa1245270 | 0.834738 | 2.519755e-56 | -8.615850e-47 |
| Msa0373350 | Msa1266720 | -0.824037 | 1.002452e-53 | -8.615850e-47 |
| Msa0373350 | Msa1284800 | 0.868033 | 8.818580e-66 | -8.615850e-47 |
| Msa0373350 | Msa1351020 | 0.826656 | 2.406876e-54 | -8.615850e-47 |
| Msa0373350 | Msa1363930 | 0.832801 | 7.683638e-56 | -8.615850e-47 |
| Msa0373350 | Msa1366540 | 0.880484 | 5.285760e-70 | -8.615850e-47 |
| Msa0373350 | Msa1387750 | 0.883315 | 4.978270e-71 | -8.615850e-47 |
| Msa0373350 | Msa1390760 | 0.834108 | 3.626260e-56 | -8.615850e-47 |
| Msa0373350 | Msa1403520 | 0.839918 | 1.188588e-57 | -8.615850e-47 |
| Msa0373350 | Msa1407200 | -0.806168 | 9.375722e-50 | -8.615850e-47 |
| Msa0373350 | Msa1407550 | 0.861256 | 1.165990e-63 | -8.615850e-47 |
| Msa0373350 | Msa1409760 | -0.803290 | 3.740147e-49 | -8.615850e-47 |
| Msa0373350 | Msa1413570 | 0.896285 | 4.271885e-76 | -8.615850e-47 |
| Msa0373350 | Msa1432310 | 0.816250 | 6.091471e-52 | -8.615850e-47 |
| Msa0373350 | Msa1446510 | 0.892471 | 1.539281e-74 | -8.615850e-47 |
| Msa0373350 | Msa1462580 | 0.844418 | 7.655798e-59 | -8.615850e-47 |
| Msa0373350 | Msa1465890 | 0.832985 | 6.916223e-56 | -8.615850e-47 |
| Msa0256350 | Msa0373350 | 0.823017 | 1.736582e-53 | -8.615850e-47 |
| Msa0270160 | Msa0373350 | 0.835142 | 1.992996e-56 | -8.615850e-47 |
| Msa0301250 | Msa0373350 | 0.802541 | 5.342243e-49 | -8.615850e-47 |
| Msa0313060 | Msa0373350 | 0.811797 | 5.849755e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373350 | MtrunA17_Chr3g0122641 | 97.802 | 182 | 4 | 0 | 1 | 182 | 1 | 182 | 6.78e-135 | 374 |
| Msa0373350 | MtrunA17_Chr8g0377301 | 97.688 | 173 | 4 | 0 | 1 | 173 | 1 | 173 | 8.84e-128 | 356 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373350 | AT1G67430.1 | 88.000 | 175 | 21 | 0 | 1 | 175 | 1 | 175 | 1.05e-115 | 326 |
| Msa0373350 | AT1G27400.1 | 88.953 | 172 | 19 | 0 | 1 | 172 | 1 | 172 | 3.18e-115 | 325 |
| Msa0373350 | AT1G67430.2 | 65.143 | 175 | 17 | 1 | 1 | 175 | 1 | 131 | 1.09e-72 | 215 |
Find 71 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAGAAGATTCAGCAAATT+AGG | 0.141947 | 3_1:-72364013 | None:intergenic |
| TCTTCATCATAAATTATTAT+TGG | 0.207122 | 3_1:+72365960 | Msa0373350:exon |
| TCTTCTTGTTTGTTGCCAAC+TGG | 0.236433 | 3_1:-72365914 | None:intergenic |
| AACATCTTCTAAGTATCTTT+TGG | 0.263817 | 3_1:-72365246 | None:intergenic |
| CTGACATAATCTATAAATAA+AGG | 0.277715 | 3_1:-72365999 | None:intergenic |
| AACAACGCAATACCTCTTTC+TGG | 0.294555 | 3_1:-72365810 | None:intergenic |
| AAGATACTTAGAAGATGTTT+TGG | 0.295183 | 3_1:+72365250 | Msa0373350:CDS |
| GGTGGGATTGTCGGGCTCTT+TGG | 0.298164 | 3_1:-72364098 | None:intergenic |
| CTTCTTGTTTGTTGCCAACT+GGG | 0.310845 | 3_1:-72365913 | None:intergenic |
| GTTTGTTGCCAACTGGGTCT+CGG | 0.315567 | 3_1:-72365907 | None:intergenic |
| AACCCTAAGGTCAGCACCTC+TGG | 0.343663 | 3_1:-72364240 | None:intergenic |
| GACGTTTCTGTCGTGGTGTT+GGG | 0.366723 | 3_1:+72365297 | Msa0373350:CDS |
| AGGCCAGAGGTGCTGACCTT+AGG | 0.368932 | 3_1:+72364237 | Msa0373350:CDS |
| TGAGAAGATTCAGCAAATTA+GGG | 0.370437 | 3_1:-72364012 | None:intergenic |
| AAATAAAGGGTCTCAACTAT+TGG | 0.372508 | 3_1:-72365985 | None:intergenic |
| TAGAGTGTCTGTTCTTAGCT+TGG | 0.376754 | 3_1:-72365328 | None:intergenic |
| TGACCTTAGGGTTCATTTCA+AGG | 0.383447 | 3_1:+72364250 | Msa0373350:CDS |
| AAGGTCAGCACCTCTGGCCT+TGG | 0.384955 | 3_1:-72364234 | None:intergenic |
| TTACATTTGGTGGGATTGTC+GGG | 0.385846 | 3_1:-72364106 | None:intergenic |
| GGCCAGAGGTGCTGACCTTA+GGG | 0.395315 | 3_1:+72364238 | Msa0373350:CDS |
| AGACGTTTCTGTCGTGGTGT+TGG | 0.397264 | 3_1:+72365296 | Msa0373350:CDS |
| AGAGTGTCTGTTCTTAGCTT+GGG | 0.404467 | 3_1:-72365327 | None:intergenic |
| GCTAAGAACAGACACTCTAA+TGG | 0.408761 | 3_1:+72365332 | Msa0373350:CDS |
| GGCTGCTCTACAAATTCGTC+AGG | 0.412861 | 3_1:-72364062 | None:intergenic |
| TTTGTTGCCAACTGGGTCTC+GGG | 0.429555 | 3_1:-72365906 | None:intergenic |
| GGGAAACAGCGTTTGCCATC+AGG | 0.433818 | 3_1:+72365204 | Msa0373350:CDS |
| TGACATAATCTATAAATAAA+GGG | 0.439008 | 3_1:-72365998 | None:intergenic |
| ATTACATTTGGTGGGATTGT+CGG | 0.454131 | 3_1:-72364107 | None:intergenic |
| TCACTTCTAGGTGAAAGGTT+TGG | 0.454273 | 3_1:+72365543 | Msa0373350:intron |
| CTAAGAACAGACACTCTAAT+GGG | 0.469410 | 3_1:+72365333 | Msa0373350:CDS |
| GATGGCAAACGCTGTTTCCC+TGG | 0.472125 | 3_1:-72365201 | None:intergenic |
| ATGAATTTAGCTGACTTGAC+AGG | 0.481469 | 3_1:-72365368 | None:intergenic |
| CTCTTAACACAAACAAGAAA+AGG | 0.485766 | 3_1:-72366210 | None:intergenic |
| TTTATGTTAATTGACTTGCT+TGG | 0.485985 | 3_1:+72366105 | Msa0373350:three_prime_UTR |
| TGAAAGGAATGGCCTGTTTG+TGG | 0.487121 | 3_1:-72365274 | None:intergenic |
| AACAAAGAAGACGTACCTAC+AGG | 0.490498 | 3_1:+72365614 | Msa0373350:CDS |
| GAAAGGAATGGCCTGTTTGT+GGG | 0.496437 | 3_1:-72365273 | None:intergenic |
| CCTTTCAGACGTTTCTGTCG+TGG | 0.497413 | 3_1:+72365290 | Msa0373350:CDS |
| ATTGTTCACTTCTAGGTGAA+AGG | 0.499870 | 3_1:+72365538 | Msa0373350:intron |
| AGACGTACCTACAGGGCTCA+TGG | 0.520971 | 3_1:+72365622 | Msa0373350:CDS |
| ACTCTAATGGGCAAGGACGC+TGG | 0.524787 | 3_1:+72365345 | Msa0373350:CDS |
| AGAGAGGAATTACATTTGGT+GGG | 0.528638 | 3_1:-72364115 | None:intergenic |
| TCTCTACGTGTCTCATATCC+AGG | 0.529280 | 3_1:+72365576 | Msa0373350:CDS |
| GAGAGAGGAATTACATTTGG+TGG | 0.535354 | 3_1:-72364116 | None:intergenic |
| ATCTGTAATTGCAGCAACCA+AGG | 0.554826 | 3_1:+72364217 | Msa0373350:intron |
| GGTCAGGGGCAACTTCCTGA+TGG | 0.558655 | 3_1:-72365219 | None:intergenic |
| GGAAGAGGCTGTCCAGAAAG+AGG | 0.559016 | 3_1:+72365798 | Msa0373350:CDS |
| GATTCTTCCATGAGCCCTGT+AGG | 0.559080 | 3_1:-72365629 | None:intergenic |
| TTACCTTGAAATGAACCCTA+AGG | 0.566981 | 3_1:-72364253 | None:intergenic |
| ACGAATTTGTAGAGCAGCCA+TGG | 0.572014 | 3_1:+72364066 | Msa0373350:exon |
| GATACTATCTGAGAAGGAAG+AGG | 0.578357 | 3_1:+72365783 | Msa0373350:CDS |
| CCACGACAGAAACGTCTGAA+AGG | 0.578584 | 3_1:-72365290 | None:intergenic |
| AAAGGACGTGCAAAACTCAA+AGG | 0.597080 | 3_1:-72366192 | None:intergenic |
| TGAACTCGATTGTGGGAAGG+AGG | 0.598251 | 3_1:-72364036 | None:intergenic |
| CTAGGTGAAAGGTTTGGATG+TGG | 0.599987 | 3_1:+72365549 | Msa0373350:intron |
| TCTGTAGCCCGAGACCCAGT+TGG | 0.601405 | 3_1:+72365899 | Msa0373350:intron |
| GGGTGAACTCGATTGTGGGA+AGG | 0.604988 | 3_1:-72364039 | None:intergenic |
| GTTTCTGTCGTGGTGTTGGG+AGG | 0.606753 | 3_1:+72365300 | Msa0373350:CDS |
| CTCTTTGGAGTACTTCACCA+TGG | 0.611437 | 3_1:-72364083 | None:intergenic |
| ACAAAGAAGACGTACCTACA+GGG | 0.613276 | 3_1:+72365615 | Msa0373350:CDS |
| CGAACTGATACTATCTGAGA+AGG | 0.615825 | 3_1:+72365777 | Msa0373350:CDS |
| AACAGACACTCTAATGGGCA+AGG | 0.616551 | 3_1:+72365338 | Msa0373350:CDS |
| ACAGAAACGTCTGAAAGGAA+TGG | 0.620803 | 3_1:-72365285 | None:intergenic |
| TGCTCTACAAATTCGTCAGG+GGG | 0.622983 | 3_1:-72364059 | None:intergenic |
| GCTGCTCTACAAATTCGTCA+GGG | 0.623025 | 3_1:-72364061 | None:intergenic |
| AAGTCTCAAGCTGTTCGAAG+TGG | 0.631486 | 3_1:+72365936 | Msa0373350:CDS |
| AGTATCAGTTCGATGTGGCA+AGG | 0.635093 | 3_1:-72365766 | None:intergenic |
| CTGCTCTACAAATTCGTCAG+GGG | 0.648836 | 3_1:-72364060 | None:intergenic |
| ATTGCAGCAACCAAGGCCAG+AGG | 0.682613 | 3_1:+72364224 | Msa0373350:intron |
| GTGGCAAGGAGATGACATGT+AGG | 0.691037 | 3_1:-72365752 | None:intergenic |
| CAGATAGTATCAGTTCGATG+TGG | 0.705561 | 3_1:-72365771 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATAAATACATATGAA+GGG | - | chr3_1:72364942-72364961 | None:intergenic | 10.0% |
| !! | TTAAAAATAAATACATATGA+AGG | - | chr3_1:72364943-72364962 | None:intergenic | 10.0% |
| !! | TAAAAATAAATACATATGAA+GGG | - | chr3_1:72364942-72364961 | None:intergenic | 10.0% |
| !! | TTAAAAATAAATACATATGA+AGG | - | chr3_1:72364943-72364962 | None:intergenic | 10.0% |
| !!! | AATTAACTTTTTTATCCAAA+AGG | - | chr3_1:72364671-72364690 | None:intergenic | 15.0% |
| !! | TCTTCATCATAAATTATTAT+TGG | + | chr3_1:72365960-72365979 | Msa0373350:exon | 15.0% |
| !! | TGACATAATCTATAAATAAA+GGG | - | chr3_1:72366001-72366020 | None:intergenic | 15.0% |
| !!! | AATTAACTTTTTTATCCAAA+AGG | - | chr3_1:72364671-72364690 | None:intergenic | 15.0% |
| !! | TCTTCATCATAAATTATTAT+TGG | + | chr3_1:72365960-72365979 | Msa0373350:exon | 15.0% |
| !! | TGACATAATCTATAAATAAA+GGG | - | chr3_1:72366001-72366020 | None:intergenic | 15.0% |
| !! | GATTAATTTAACCTAATTTG+TGG | + | chr3_1:72364189-72364208 | Msa0373350:intron | 20.0% |
| !! | TATTATTCATAATCTTGTCA+AGG | + | chr3_1:72364455-72364474 | Msa0373350:intron | 20.0% |
| !! | CTGACATAATCTATAAATAA+AGG | - | chr3_1:72366002-72366021 | None:intergenic | 20.0% |
| !! | GATTAATTTAACCTAATTTG+TGG | + | chr3_1:72364189-72364208 | Msa0373350:intron | 20.0% |
| !! | TATTATTCATAATCTTGTCA+AGG | + | chr3_1:72364455-72364474 | Msa0373350:intron | 20.0% |
| !! | CTGACATAATCTATAAATAA+AGG | - | chr3_1:72366002-72366021 | None:intergenic | 20.0% |
| ! | ACAAAATGCAATTTCTCTAT+AGG | - | chr3_1:72364616-72364635 | None:intergenic | 25.0% |
| !!! | ACTTTTTTATCCAAAAGGTA+AGG | - | chr3_1:72364666-72364685 | None:intergenic | 25.0% |
| !! | ATCAGTAGATTAGTTGAAAA+TGG | + | chr3_1:72364894-72364913 | Msa0373350:intron | 25.0% |
| ! | ATTAGTTGAAAATGGTCATT+TGG | + | chr3_1:72364902-72364921 | Msa0373350:intron | 25.0% |
| !! | AACATCTTCTAAGTATCTTT+TGG | - | chr3_1:72365249-72365268 | None:intergenic | 25.0% |
| !! | AAGATACTTAGAAGATGTTT+TGG | + | chr3_1:72365250-72365269 | Msa0373350:CDS | 25.0% |
| ! | GCATTCTTATACTTATATAC+TGG | + | chr3_1:72365704-72365723 | Msa0373350:intron | 25.0% |
| ! | TTCTTATACTTATATACTGG+CGG | + | chr3_1:72365707-72365726 | Msa0373350:intron | 25.0% |
| !!! | GCGGTGTTTTTTTTTTTTTT+TGG | + | chr3_1:72365726-72365745 | Msa0373350:intron | 25.0% |
| !!! | TTTATGTTAATTGACTTGCT+TGG | + | chr3_1:72366105-72366124 | Msa0373350:three_prime_UTR | 25.0% |
| ! | ACAAAATGCAATTTCTCTAT+AGG | - | chr3_1:72364616-72364635 | None:intergenic | 25.0% |
| !!! | ACTTTTTTATCCAAAAGGTA+AGG | - | chr3_1:72364666-72364685 | None:intergenic | 25.0% |
| !! | ATCAGTAGATTAGTTGAAAA+TGG | + | chr3_1:72364894-72364913 | Msa0373350:intron | 25.0% |
| ! | ATTAGTTGAAAATGGTCATT+TGG | + | chr3_1:72364902-72364921 | Msa0373350:intron | 25.0% |
| !! | AACATCTTCTAAGTATCTTT+TGG | - | chr3_1:72365249-72365268 | None:intergenic | 25.0% |
| !! | AAGATACTTAGAAGATGTTT+TGG | + | chr3_1:72365250-72365269 | Msa0373350:CDS | 25.0% |
| ! | GCATTCTTATACTTATATAC+TGG | + | chr3_1:72365704-72365723 | Msa0373350:intron | 25.0% |
| ! | TTCTTATACTTATATACTGG+CGG | + | chr3_1:72365707-72365726 | Msa0373350:intron | 25.0% |
| !!! | GCGGTGTTTTTTTTTTTTTT+TGG | + | chr3_1:72365726-72365745 | Msa0373350:intron | 25.0% |
| !!! | TTTATGTTAATTGACTTGCT+TGG | + | chr3_1:72366105-72366124 | Msa0373350:three_prime_UTR | 25.0% |
| TGAGAAGATTCAGCAAATTA+GGG | - | chr3_1:72364015-72364034 | None:intergenic | 30.0% | |
| ACAGATCAAAACCACAAATT+AGG | - | chr3_1:72364203-72364222 | None:intergenic | 30.0% | |
| GTAGAGATAGATCATGATAT+AGG | + | chr3_1:72364305-72364324 | Msa0373350:intron | 30.0% | |
| TAGCTGATCTAGTGAATTTA+CGG | + | chr3_1:72364379-72364398 | Msa0373350:intron | 30.0% | |
| AAACATAAGCCAATCCAAAA+GGG | - | chr3_1:72364406-72364425 | None:intergenic | 30.0% | |
| AAGTCATAAGTTCTCACTAA+CGG | - | chr3_1:72364517-72364536 | None:intergenic | 30.0% | |
| CAATTTCTCTATAGGACATA+GGG | - | chr3_1:72364608-72364627 | None:intergenic | 30.0% | |
| TAAGCACTAATGAGAATCTT+TGG | - | chr3_1:72364873-72364892 | None:intergenic | 30.0% | |
| CTAAGAACAAAAACAACAAC+AGG | - | chr3_1:72365134-72365153 | None:intergenic | 30.0% | |
| !!! | TTCTAAGTATCTTTTGGCTT+TGG | - | chr3_1:72365243-72365262 | None:intergenic | 30.0% |
| TTGTTTGATTGTTCACTTCT+AGG | + | chr3_1:72365531-72365550 | Msa0373350:intron | 30.0% | |
| TATTCTTATTCGTGTTTGGA+TGG | + | chr3_1:72365667-72365686 | Msa0373350:intron | 30.0% | |
| AGTGGAGATGAAAATTCAAA+AGG | - | chr3_1:72365842-72365861 | None:intergenic | 30.0% | |
| ! | ATTTTCATCTCCACTCTAAA+AGG | + | chr3_1:72365847-72365866 | Msa0373350:intron | 30.0% |
| !! | TTTTCATCTCCACTCTAAAA+GGG | + | chr3_1:72365848-72365867 | Msa0373350:intron | 30.0% |
| AAATAAAGGGTCTCAACTAT+TGG | - | chr3_1:72365988-72366007 | None:intergenic | 30.0% | |
| !! | GACTTGCTTGGAAAATTTTA+TGG | + | chr3_1:72366117-72366136 | Msa0373350:three_prime_UTR | 30.0% |
| ! | TTGCTTGGAAAATTTTATGG+TGG | + | chr3_1:72366120-72366139 | Msa0373350:three_prime_UTR | 30.0% |
| !!! | GATTCAAGTTTTGTTTACCA+TGG | + | chr3_1:72366156-72366175 | Msa0373350:three_prime_UTR | 30.0% |
| TGAGAAGATTCAGCAAATTA+GGG | - | chr3_1:72364015-72364034 | None:intergenic | 30.0% | |
| ACAGATCAAAACCACAAATT+AGG | - | chr3_1:72364203-72364222 | None:intergenic | 30.0% | |
| GTAGAGATAGATCATGATAT+AGG | + | chr3_1:72364305-72364324 | Msa0373350:intron | 30.0% | |
| TAGCTGATCTAGTGAATTTA+CGG | + | chr3_1:72364379-72364398 | Msa0373350:intron | 30.0% | |
| AAACATAAGCCAATCCAAAA+GGG | - | chr3_1:72364406-72364425 | None:intergenic | 30.0% | |
| AAGTCATAAGTTCTCACTAA+CGG | - | chr3_1:72364517-72364536 | None:intergenic | 30.0% | |
| CAATTTCTCTATAGGACATA+GGG | - | chr3_1:72364608-72364627 | None:intergenic | 30.0% | |
| TAAGCACTAATGAGAATCTT+TGG | - | chr3_1:72364873-72364892 | None:intergenic | 30.0% | |
| CTAAGAACAAAAACAACAAC+AGG | - | chr3_1:72365134-72365153 | None:intergenic | 30.0% | |
| !!! | TTCTAAGTATCTTTTGGCTT+TGG | - | chr3_1:72365243-72365262 | None:intergenic | 30.0% |
| TTGTTTGATTGTTCACTTCT+AGG | + | chr3_1:72365531-72365550 | Msa0373350:intron | 30.0% | |
| TATTCTTATTCGTGTTTGGA+TGG | + | chr3_1:72365667-72365686 | Msa0373350:intron | 30.0% | |
| AGTGGAGATGAAAATTCAAA+AGG | - | chr3_1:72365842-72365861 | None:intergenic | 30.0% | |
| ! | ATTTTCATCTCCACTCTAAA+AGG | + | chr3_1:72365847-72365866 | Msa0373350:intron | 30.0% |
| !! | TTTTCATCTCCACTCTAAAA+GGG | + | chr3_1:72365848-72365867 | Msa0373350:intron | 30.0% |
| AAATAAAGGGTCTCAACTAT+TGG | - | chr3_1:72365988-72366007 | None:intergenic | 30.0% | |
| !! | GACTTGCTTGGAAAATTTTA+TGG | + | chr3_1:72366117-72366136 | Msa0373350:three_prime_UTR | 30.0% |
| ! | TTGCTTGGAAAATTTTATGG+TGG | + | chr3_1:72366120-72366139 | Msa0373350:three_prime_UTR | 30.0% |
| !!! | GATTCAAGTTTTGTTTACCA+TGG | + | chr3_1:72366156-72366175 | Msa0373350:three_prime_UTR | 30.0% |
| CTGAGAAGATTCAGCAAATT+AGG | - | chr3_1:72364016-72364035 | None:intergenic | 35.0% | |
| ! | ATTACATTTGGTGGGATTGT+CGG | - | chr3_1:72364110-72364129 | None:intergenic | 35.0% |
| AGAGAGGAATTACATTTGGT+GGG | - | chr3_1:72364118-72364137 | None:intergenic | 35.0% | |
| ATCGAGAGAGGAATTACATT+TGG | - | chr3_1:72364122-72364141 | None:intergenic | 35.0% | |
| ATGAAAGAAGAAATCGAGAG+AGG | - | chr3_1:72364134-72364153 | None:intergenic | 35.0% | |
| TTACCTTGAAATGAACCCTA+AGG | - | chr3_1:72364256-72364275 | None:intergenic | 35.0% | |
| AGCTGATCTAGTGAATTTAC+GGG | + | chr3_1:72364380-72364399 | Msa0373350:intron | 35.0% | |
| CAAACATAAGCCAATCCAAA+AGG | - | chr3_1:72364407-72364426 | None:intergenic | 35.0% | |
| TATAGGACATAGGGTTCATT+TGG | - | chr3_1:72364599-72364618 | None:intergenic | 35.0% | |
| GCAATTTCTCTATAGGACAT+AGG | - | chr3_1:72364609-72364628 | None:intergenic | 35.0% | |
| ! | TTATAACCTGCCTTACCTTT+TGG | + | chr3_1:72364653-72364672 | Msa0373350:intron | 35.0% |
| ! | TTTTATCCAAAAGGTAAGGC+AGG | - | chr3_1:72364662-72364681 | None:intergenic | 35.0% |
| ! | AACTATCCTTTGAGAGCATA+GGG | + | chr3_1:72364796-72364815 | Msa0373350:intron | 35.0% |
| TTATTTCCCTATGCTCTCAA+AGG | - | chr3_1:72364805-72364824 | None:intergenic | 35.0% | |
| ! | GAGAATCTTTGGAAGACATA+TGG | - | chr3_1:72364862-72364881 | None:intergenic | 35.0% |
| ATACATATGAAGGGCAAGTT+TGG | - | chr3_1:72364933-72364952 | None:intergenic | 35.0% | |
| !! | TCAAATTTGGTGGACTAGTT+TGG | + | chr3_1:72365088-72365107 | Msa0373350:intron | 35.0% |
| CTAAGAACAGACACTCTAAT+GGG | + | chr3_1:72365333-72365352 | Msa0373350:CDS | 35.0% | |
| !! | ATGAATTTAGCTGACTTGAC+AGG | - | chr3_1:72365371-72365390 | None:intergenic | 35.0% |
| ATTGTTCACTTCTAGGTGAA+AGG | + | chr3_1:72365538-72365557 | Msa0373350:intron | 35.0% | |
| GCACTATTCTTATTCGTGTT+TGG | + | chr3_1:72365663-72365682 | Msa0373350:intron | 35.0% | |
| !! | GATACAATACCCTTTTAGAG+TGG | - | chr3_1:72365860-72365879 | None:intergenic | 35.0% |
| !!! | AACTCAAAGGTATTTTCACG+AGG | - | chr3_1:72366182-72366201 | None:intergenic | 35.0% |
| CTGAGAAGATTCAGCAAATT+AGG | - | chr3_1:72364016-72364035 | None:intergenic | 35.0% | |
| ! | ATTACATTTGGTGGGATTGT+CGG | - | chr3_1:72364110-72364129 | None:intergenic | 35.0% |
| AGAGAGGAATTACATTTGGT+GGG | - | chr3_1:72364118-72364137 | None:intergenic | 35.0% | |
| ATCGAGAGAGGAATTACATT+TGG | - | chr3_1:72364122-72364141 | None:intergenic | 35.0% | |
| ATGAAAGAAGAAATCGAGAG+AGG | - | chr3_1:72364134-72364153 | None:intergenic | 35.0% | |
| TTACCTTGAAATGAACCCTA+AGG | - | chr3_1:72364256-72364275 | None:intergenic | 35.0% | |
| AGCTGATCTAGTGAATTTAC+GGG | + | chr3_1:72364380-72364399 | Msa0373350:intron | 35.0% | |
| CAAACATAAGCCAATCCAAA+AGG | - | chr3_1:72364407-72364426 | None:intergenic | 35.0% | |
| TATAGGACATAGGGTTCATT+TGG | - | chr3_1:72364599-72364618 | None:intergenic | 35.0% | |
| GCAATTTCTCTATAGGACAT+AGG | - | chr3_1:72364609-72364628 | None:intergenic | 35.0% | |
| ! | TTATAACCTGCCTTACCTTT+TGG | + | chr3_1:72364653-72364672 | Msa0373350:intron | 35.0% |
| ! | TTTTATCCAAAAGGTAAGGC+AGG | - | chr3_1:72364662-72364681 | None:intergenic | 35.0% |
| ! | AACTATCCTTTGAGAGCATA+GGG | + | chr3_1:72364796-72364815 | Msa0373350:intron | 35.0% |
| TTATTTCCCTATGCTCTCAA+AGG | - | chr3_1:72364805-72364824 | None:intergenic | 35.0% | |
| ! | GAGAATCTTTGGAAGACATA+TGG | - | chr3_1:72364862-72364881 | None:intergenic | 35.0% |
| ATACATATGAAGGGCAAGTT+TGG | - | chr3_1:72364933-72364952 | None:intergenic | 35.0% | |
| !! | TCAAATTTGGTGGACTAGTT+TGG | + | chr3_1:72365088-72365107 | Msa0373350:intron | 35.0% |
| CTAAGAACAGACACTCTAAT+GGG | + | chr3_1:72365333-72365352 | Msa0373350:CDS | 35.0% | |
| !! | ATGAATTTAGCTGACTTGAC+AGG | - | chr3_1:72365371-72365390 | None:intergenic | 35.0% |
| ATTGTTCACTTCTAGGTGAA+AGG | + | chr3_1:72365538-72365557 | Msa0373350:intron | 35.0% | |
| GCACTATTCTTATTCGTGTT+TGG | + | chr3_1:72365663-72365682 | Msa0373350:intron | 35.0% | |
| !! | GATACAATACCCTTTTAGAG+TGG | - | chr3_1:72365860-72365879 | None:intergenic | 35.0% |
| !!! | AACTCAAAGGTATTTTCACG+AGG | - | chr3_1:72366182-72366201 | None:intergenic | 35.0% |
| ! | TTACATTTGGTGGGATTGTC+GGG | - | chr3_1:72364109-72364128 | None:intergenic | 40.0% |
| GAGAGAGGAATTACATTTGG+TGG | - | chr3_1:72364119-72364138 | None:intergenic | 40.0% | |
| ATCTGTAATTGCAGCAACCA+AGG | + | chr3_1:72364217-72364236 | Msa0373350:intron | 40.0% | |
| TGACCTTAGGGTTCATTTCA+AGG | + | chr3_1:72364250-72364269 | Msa0373350:CDS | 40.0% | |
| ! | GAACTATCCTTTGAGAGCAT+AGG | + | chr3_1:72364795-72364814 | Msa0373350:intron | 40.0% |
| ! | GGCAAATCAAGTGGGTTTAA+AGG | - | chr3_1:72365000-72365019 | None:intergenic | 40.0% |
| ACCATCATGGCAAATCAAGT+GGG | - | chr3_1:72365008-72365027 | None:intergenic | 40.0% | |
| !! | TTTCCCCTTGGTGTCAAATT+TGG | + | chr3_1:72365075-72365094 | Msa0373350:intron | 40.0% |
| TCCACCAAATTTGACACCAA+GGG | - | chr3_1:72365082-72365101 | None:intergenic | 40.0% | |
| ! | ATTTTACTGTGCAGAACACC+AGG | + | chr3_1:72365183-72365202 | Msa0373350:intron | 40.0% |
| ! | TTTTACTGTGCAGAACACCA+GGG | + | chr3_1:72365184-72365203 | Msa0373350:intron | 40.0% |
| !!! | TATCTTTTGGCTTTGGTCAG+GGG | - | chr3_1:72365236-72365255 | None:intergenic | 40.0% |
| !!! | GTATCTTTTGGCTTTGGTCA+GGG | - | chr3_1:72365237-72365256 | None:intergenic | 40.0% |
| !!! | AGTATCTTTTGGCTTTGGTC+AGG | - | chr3_1:72365238-72365257 | None:intergenic | 40.0% |
| ACAGAAACGTCTGAAAGGAA+TGG | - | chr3_1:72365288-72365307 | None:intergenic | 40.0% | |
| ! | AGAGTGTCTGTTCTTAGCTT+GGG | - | chr3_1:72365330-72365349 | None:intergenic | 40.0% |
| ! | TAGAGTGTCTGTTCTTAGCT+TGG | - | chr3_1:72365331-72365350 | None:intergenic | 40.0% |
| GCTAAGAACAGACACTCTAA+TGG | + | chr3_1:72365332-72365351 | Msa0373350:CDS | 40.0% | |
| TGCAGTTTGATGCGTTTAAC+TGG | + | chr3_1:72365488-72365507 | Msa0373350:intron | 40.0% | |
| TCACTTCTAGGTGAAAGGTT+TGG | + | chr3_1:72365543-72365562 | Msa0373350:intron | 40.0% | |
| !! | GTTTTTGAGCTTGATTGACC+TGG | - | chr3_1:72365597-72365616 | None:intergenic | 40.0% |
| AACAAAGAAGACGTACCTAC+AGG | + | chr3_1:72365614-72365633 | Msa0373350:CDS | 40.0% | |
| ACAAAGAAGACGTACCTACA+GGG | + | chr3_1:72365615-72365634 | Msa0373350:CDS | 40.0% | |
| CAGATAGTATCAGTTCGATG+TGG | - | chr3_1:72365774-72365793 | None:intergenic | 40.0% | |
| CGAACTGATACTATCTGAGA+AGG | + | chr3_1:72365777-72365796 | Msa0373350:CDS | 40.0% | |
| GATACTATCTGAGAAGGAAG+AGG | + | chr3_1:72365783-72365802 | Msa0373350:CDS | 40.0% | |
| AACAACGCAATACCTCTTTC+TGG | - | chr3_1:72365813-72365832 | None:intergenic | 40.0% | |
| ! | CTTCTTGTTTGTTGCCAACT+GGG | - | chr3_1:72365916-72365935 | None:intergenic | 40.0% |
| ! | TCTTCTTGTTTGTTGCCAAC+TGG | - | chr3_1:72365917-72365936 | None:intergenic | 40.0% |
| AAAGGACGTGCAAAACTCAA+AGG | - | chr3_1:72366195-72366214 | None:intergenic | 40.0% | |
| ! | TTACATTTGGTGGGATTGTC+GGG | - | chr3_1:72364109-72364128 | None:intergenic | 40.0% |
| GAGAGAGGAATTACATTTGG+TGG | - | chr3_1:72364119-72364138 | None:intergenic | 40.0% | |
| ATCTGTAATTGCAGCAACCA+AGG | + | chr3_1:72364217-72364236 | Msa0373350:intron | 40.0% | |
| TGACCTTAGGGTTCATTTCA+AGG | + | chr3_1:72364250-72364269 | Msa0373350:CDS | 40.0% | |
| ! | GAACTATCCTTTGAGAGCAT+AGG | + | chr3_1:72364795-72364814 | Msa0373350:intron | 40.0% |
| ! | GGCAAATCAAGTGGGTTTAA+AGG | - | chr3_1:72365000-72365019 | None:intergenic | 40.0% |
| ACCATCATGGCAAATCAAGT+GGG | - | chr3_1:72365008-72365027 | None:intergenic | 40.0% | |
| !! | TTTCCCCTTGGTGTCAAATT+TGG | + | chr3_1:72365075-72365094 | Msa0373350:intron | 40.0% |
| TCCACCAAATTTGACACCAA+GGG | - | chr3_1:72365082-72365101 | None:intergenic | 40.0% | |
| ! | ATTTTACTGTGCAGAACACC+AGG | + | chr3_1:72365183-72365202 | Msa0373350:intron | 40.0% |
| ! | TTTTACTGTGCAGAACACCA+GGG | + | chr3_1:72365184-72365203 | Msa0373350:intron | 40.0% |
| !!! | TATCTTTTGGCTTTGGTCAG+GGG | - | chr3_1:72365236-72365255 | None:intergenic | 40.0% |
| !!! | GTATCTTTTGGCTTTGGTCA+GGG | - | chr3_1:72365237-72365256 | None:intergenic | 40.0% |
| !!! | AGTATCTTTTGGCTTTGGTC+AGG | - | chr3_1:72365238-72365257 | None:intergenic | 40.0% |
| ACAGAAACGTCTGAAAGGAA+TGG | - | chr3_1:72365288-72365307 | None:intergenic | 40.0% | |
| ! | AGAGTGTCTGTTCTTAGCTT+GGG | - | chr3_1:72365330-72365349 | None:intergenic | 40.0% |
| ! | TAGAGTGTCTGTTCTTAGCT+TGG | - | chr3_1:72365331-72365350 | None:intergenic | 40.0% |
| GCTAAGAACAGACACTCTAA+TGG | + | chr3_1:72365332-72365351 | Msa0373350:CDS | 40.0% | |
| TGCAGTTTGATGCGTTTAAC+TGG | + | chr3_1:72365488-72365507 | Msa0373350:intron | 40.0% | |
| TCACTTCTAGGTGAAAGGTT+TGG | + | chr3_1:72365543-72365562 | Msa0373350:intron | 40.0% | |
| !! | GTTTTTGAGCTTGATTGACC+TGG | - | chr3_1:72365597-72365616 | None:intergenic | 40.0% |
| AACAAAGAAGACGTACCTAC+AGG | + | chr3_1:72365614-72365633 | Msa0373350:CDS | 40.0% | |
| ACAAAGAAGACGTACCTACA+GGG | + | chr3_1:72365615-72365634 | Msa0373350:CDS | 40.0% | |
| CAGATAGTATCAGTTCGATG+TGG | - | chr3_1:72365774-72365793 | None:intergenic | 40.0% | |
| CGAACTGATACTATCTGAGA+AGG | + | chr3_1:72365777-72365796 | Msa0373350:CDS | 40.0% | |
| GATACTATCTGAGAAGGAAG+AGG | + | chr3_1:72365783-72365802 | Msa0373350:CDS | 40.0% | |
| AACAACGCAATACCTCTTTC+TGG | - | chr3_1:72365813-72365832 | None:intergenic | 40.0% | |
| ! | CTTCTTGTTTGTTGCCAACT+GGG | - | chr3_1:72365916-72365935 | None:intergenic | 40.0% |
| ! | TCTTCTTGTTTGTTGCCAAC+TGG | - | chr3_1:72365917-72365936 | None:intergenic | 40.0% |
| AAAGGACGTGCAAAACTCAA+AGG | - | chr3_1:72366195-72366214 | None:intergenic | 40.0% | |
| TGCTCTACAAATTCGTCAGG+GGG | - | chr3_1:72364062-72364081 | None:intergenic | 45.0% | |
| CTGCTCTACAAATTCGTCAG+GGG | - | chr3_1:72364063-72364082 | None:intergenic | 45.0% | |
| GCTGCTCTACAAATTCGTCA+GGG | - | chr3_1:72364064-72364083 | None:intergenic | 45.0% | |
| ACGAATTTGTAGAGCAGCCA+TGG | + | chr3_1:72364066-72364085 | Msa0373350:exon | 45.0% | |
| !! | CTCTTTGGAGTACTTCACCA+TGG | - | chr3_1:72364086-72364105 | None:intergenic | 45.0% |
| GATCAGCTATTCTGACAGCT+CGG | - | chr3_1:72364368-72364387 | None:intergenic | 45.0% | |
| ! | AGTGAATTTACGGGCCCTTT+TGG | + | chr3_1:72364389-72364408 | Msa0373350:intron | 45.0% |
| ! | ATTTACGGGCCCTTTTGGAT+TGG | + | chr3_1:72364394-72364413 | Msa0373350:intron | 45.0% |
| !! | ACCCACTTGATTTGCCATGA+TGG | + | chr3_1:72365004-72365023 | Msa0373350:intron | 45.0% |
| CACCATCATGGCAAATCAAG+TGG | - | chr3_1:72365009-72365028 | None:intergenic | 45.0% | |
| !! | TTGCCATGATGGTGTTGACT+TGG | + | chr3_1:72365015-72365034 | Msa0373350:intron | 45.0% |
| !! | TGCCATGATGGTGTTGACTT+GGG | + | chr3_1:72365016-72365035 | Msa0373350:intron | 45.0% |
| AACAAACCTGAGACCTTTGG+AGG | - | chr3_1:72365057-72365076 | None:intergenic | 45.0% | |
| GGAAACAAACCTGAGACCTT+TGG | - | chr3_1:72365060-72365079 | None:intergenic | 45.0% | |
| CCACCAAATTTGACACCAAG+GGG | - | chr3_1:72365081-72365100 | None:intergenic | 45.0% | |
| GTCCACCAAATTTGACACCA+AGG | - | chr3_1:72365083-72365102 | None:intergenic | 45.0% | |
| !!! | AGATGTTTTGGCCCACAAAC+AGG | + | chr3_1:72365262-72365281 | Msa0373350:CDS | 45.0% |
| GAAAGGAATGGCCTGTTTGT+GGG | - | chr3_1:72365276-72365295 | None:intergenic | 45.0% | |
| TGAAAGGAATGGCCTGTTTG+TGG | - | chr3_1:72365277-72365296 | None:intergenic | 45.0% | |
| ! | AACAGACACTCTAATGGGCA+AGG | + | chr3_1:72365338-72365357 | Msa0373350:CDS | 45.0% |
| CTAGGTGAAAGGTTTGGATG+TGG | + | chr3_1:72365549-72365568 | Msa0373350:intron | 45.0% | |
| TCTCTACGTGTCTCATATCC+AGG | + | chr3_1:72365576-72365595 | Msa0373350:CDS | 45.0% | |
| AGTATCAGTTCGATGTGGCA+AGG | - | chr3_1:72365769-72365788 | None:intergenic | 45.0% | |
| AAGTCTCAAGCTGTTCGAAG+TGG | + | chr3_1:72365936-72365955 | Msa0373350:CDS | 45.0% | |
| !! | AAGGTATTTTCACGAGGCCA+TGG | - | chr3_1:72366176-72366195 | None:intergenic | 45.0% |
| TGCTCTACAAATTCGTCAGG+GGG | - | chr3_1:72364062-72364081 | None:intergenic | 45.0% | |
| CTGCTCTACAAATTCGTCAG+GGG | - | chr3_1:72364063-72364082 | None:intergenic | 45.0% | |
| GCTGCTCTACAAATTCGTCA+GGG | - | chr3_1:72364064-72364083 | None:intergenic | 45.0% | |
| ACGAATTTGTAGAGCAGCCA+TGG | + | chr3_1:72364066-72364085 | Msa0373350:exon | 45.0% | |
| !! | CTCTTTGGAGTACTTCACCA+TGG | - | chr3_1:72364086-72364105 | None:intergenic | 45.0% |
| GATCAGCTATTCTGACAGCT+CGG | - | chr3_1:72364368-72364387 | None:intergenic | 45.0% | |
| ! | AGTGAATTTACGGGCCCTTT+TGG | + | chr3_1:72364389-72364408 | Msa0373350:intron | 45.0% |
| ! | ATTTACGGGCCCTTTTGGAT+TGG | + | chr3_1:72364394-72364413 | Msa0373350:intron | 45.0% |
| !! | ACCCACTTGATTTGCCATGA+TGG | + | chr3_1:72365004-72365023 | Msa0373350:intron | 45.0% |
| CACCATCATGGCAAATCAAG+TGG | - | chr3_1:72365009-72365028 | None:intergenic | 45.0% | |
| !! | TTGCCATGATGGTGTTGACT+TGG | + | chr3_1:72365015-72365034 | Msa0373350:intron | 45.0% |
| !! | TGCCATGATGGTGTTGACTT+GGG | + | chr3_1:72365016-72365035 | Msa0373350:intron | 45.0% |
| AACAAACCTGAGACCTTTGG+AGG | - | chr3_1:72365057-72365076 | None:intergenic | 45.0% | |
| GGAAACAAACCTGAGACCTT+TGG | - | chr3_1:72365060-72365079 | None:intergenic | 45.0% | |
| CCACCAAATTTGACACCAAG+GGG | - | chr3_1:72365081-72365100 | None:intergenic | 45.0% | |
| GTCCACCAAATTTGACACCA+AGG | - | chr3_1:72365083-72365102 | None:intergenic | 45.0% | |
| !!! | AGATGTTTTGGCCCACAAAC+AGG | + | chr3_1:72365262-72365281 | Msa0373350:CDS | 45.0% |
| GAAAGGAATGGCCTGTTTGT+GGG | - | chr3_1:72365276-72365295 | None:intergenic | 45.0% | |
| TGAAAGGAATGGCCTGTTTG+TGG | - | chr3_1:72365277-72365296 | None:intergenic | 45.0% | |
| ! | AACAGACACTCTAATGGGCA+AGG | + | chr3_1:72365338-72365357 | Msa0373350:CDS | 45.0% |
| CTAGGTGAAAGGTTTGGATG+TGG | + | chr3_1:72365549-72365568 | Msa0373350:intron | 45.0% | |
| TCTCTACGTGTCTCATATCC+AGG | + | chr3_1:72365576-72365595 | Msa0373350:CDS | 45.0% | |
| AGTATCAGTTCGATGTGGCA+AGG | - | chr3_1:72365769-72365788 | None:intergenic | 45.0% | |
| AAGTCTCAAGCTGTTCGAAG+TGG | + | chr3_1:72365936-72365955 | Msa0373350:CDS | 45.0% | |
| !! | AAGGTATTTTCACGAGGCCA+TGG | - | chr3_1:72366176-72366195 | None:intergenic | 45.0% |
| TGAACTCGATTGTGGGAAGG+AGG | - | chr3_1:72364039-72364058 | None:intergenic | 50.0% | |
| GGCTGCTCTACAAATTCGTC+AGG | - | chr3_1:72364065-72364084 | None:intergenic | 50.0% | |
| !! | GCCATGATGGTGTTGACTTG+GGG | + | chr3_1:72365017-72365036 | Msa0373350:intron | 50.0% |
| ! | GTCTCAGGTTTGTTTCCCCT+TGG | + | chr3_1:72365063-72365082 | Msa0373350:intron | 50.0% |
| !! | CCCCTTGGTGTCAAATTTGG+TGG | + | chr3_1:72365078-72365097 | Msa0373350:intron | 50.0% |
| CCACGACAGAAACGTCTGAA+AGG | - | chr3_1:72365293-72365312 | None:intergenic | 50.0% | |
| CCTTTCAGACGTTTCTGTCG+TGG | + | chr3_1:72365290-72365309 | Msa0373350:CDS | 50.0% | |
| AGACGTTTCTGTCGTGGTGT+TGG | + | chr3_1:72365296-72365315 | Msa0373350:CDS | 50.0% | |
| GACGTTTCTGTCGTGGTGTT+GGG | + | chr3_1:72365297-72365316 | Msa0373350:CDS | 50.0% | |
| GATTCTTCCATGAGCCCTGT+AGG | - | chr3_1:72365632-72365651 | None:intergenic | 50.0% | |
| GTGGCAAGGAGATGACATGT+AGG | - | chr3_1:72365755-72365774 | None:intergenic | 50.0% | |
| TTTGTTGCCAACTGGGTCTC+GGG | - | chr3_1:72365909-72365928 | None:intergenic | 50.0% | |
| ! | GTTTGTTGCCAACTGGGTCT+CGG | - | chr3_1:72365910-72365929 | None:intergenic | 50.0% |
| TGAACTCGATTGTGGGAAGG+AGG | - | chr3_1:72364039-72364058 | None:intergenic | 50.0% | |
| GGCTGCTCTACAAATTCGTC+AGG | - | chr3_1:72364065-72364084 | None:intergenic | 50.0% | |
| !! | GCCATGATGGTGTTGACTTG+GGG | + | chr3_1:72365017-72365036 | Msa0373350:intron | 50.0% |
| ! | GTCTCAGGTTTGTTTCCCCT+TGG | + | chr3_1:72365063-72365082 | Msa0373350:intron | 50.0% |
| !! | CCCCTTGGTGTCAAATTTGG+TGG | + | chr3_1:72365078-72365097 | Msa0373350:intron | 50.0% |
| CCACGACAGAAACGTCTGAA+AGG | - | chr3_1:72365293-72365312 | None:intergenic | 50.0% | |
| CCTTTCAGACGTTTCTGTCG+TGG | + | chr3_1:72365290-72365309 | Msa0373350:CDS | 50.0% | |
| AGACGTTTCTGTCGTGGTGT+TGG | + | chr3_1:72365296-72365315 | Msa0373350:CDS | 50.0% | |
| GACGTTTCTGTCGTGGTGTT+GGG | + | chr3_1:72365297-72365316 | Msa0373350:CDS | 50.0% | |
| GATTCTTCCATGAGCCCTGT+AGG | - | chr3_1:72365632-72365651 | None:intergenic | 50.0% | |
| GTGGCAAGGAGATGACATGT+AGG | - | chr3_1:72365755-72365774 | None:intergenic | 50.0% | |
| TTTGTTGCCAACTGGGTCTC+GGG | - | chr3_1:72365909-72365928 | None:intergenic | 50.0% | |
| ! | GTTTGTTGCCAACTGGGTCT+CGG | - | chr3_1:72365910-72365929 | None:intergenic | 50.0% |
| GGGTGAACTCGATTGTGGGA+AGG | - | chr3_1:72364042-72364061 | None:intergenic | 55.0% | |
| CAGGGGGTGAACTCGATTGT+GGG | - | chr3_1:72364046-72364065 | None:intergenic | 55.0% | |
| TCAGGGGGTGAACTCGATTG+TGG | - | chr3_1:72364047-72364066 | None:intergenic | 55.0% | |
| ATTGCAGCAACCAAGGCCAG+AGG | + | chr3_1:72364224-72364243 | Msa0373350:intron | 55.0% | |
| AACCCTAAGGTCAGCACCTC+TGG | - | chr3_1:72364243-72364262 | None:intergenic | 55.0% | |
| GCCCCAAGTCAACACCATCA+TGG | - | chr3_1:72365021-72365040 | None:intergenic | 55.0% | |
| !! | ATGGTGTTGACTTGGGGCCT+TGG | + | chr3_1:72365023-72365042 | Msa0373350:intron | 55.0% |
| !! | CTTTGGAGGAGCACTCTCCA+AGG | - | chr3_1:72365043-72365062 | None:intergenic | 55.0% |
| !! | CTTGGAGAGTGCTCCTCCAA+AGG | + | chr3_1:72365041-72365060 | Msa0373350:intron | 55.0% |
| AGTGCTCCTCCAAAGGTCTC+AGG | + | chr3_1:72365048-72365067 | Msa0373350:intron | 55.0% | |
| ! | GATGGCAAACGCTGTTTCCC+TGG | - | chr3_1:72365204-72365223 | None:intergenic | 55.0% |
| GGGAAACAGCGTTTGCCATC+AGG | + | chr3_1:72365204-72365223 | Msa0373350:CDS | 55.0% | |
| ! | GTTTCTGTCGTGGTGTTGGG+AGG | + | chr3_1:72365300-72365319 | Msa0373350:CDS | 55.0% |
| ! | ACTCTAATGGGCAAGGACGC+TGG | + | chr3_1:72365345-72365364 | Msa0373350:CDS | 55.0% |
| AGACGTACCTACAGGGCTCA+TGG | + | chr3_1:72365622-72365641 | Msa0373350:CDS | 55.0% | |
| GGAAGAGGCTGTCCAGAAAG+AGG | + | chr3_1:72365798-72365817 | Msa0373350:CDS | 55.0% | |
| GGGTGAACTCGATTGTGGGA+AGG | - | chr3_1:72364042-72364061 | None:intergenic | 55.0% | |
| CAGGGGGTGAACTCGATTGT+GGG | - | chr3_1:72364046-72364065 | None:intergenic | 55.0% | |
| TCAGGGGGTGAACTCGATTG+TGG | - | chr3_1:72364047-72364066 | None:intergenic | 55.0% | |
| ATTGCAGCAACCAAGGCCAG+AGG | + | chr3_1:72364224-72364243 | Msa0373350:intron | 55.0% | |
| AACCCTAAGGTCAGCACCTC+TGG | - | chr3_1:72364243-72364262 | None:intergenic | 55.0% | |
| GCCCCAAGTCAACACCATCA+TGG | - | chr3_1:72365021-72365040 | None:intergenic | 55.0% | |
| !! | ATGGTGTTGACTTGGGGCCT+TGG | + | chr3_1:72365023-72365042 | Msa0373350:intron | 55.0% |
| !! | CTTTGGAGGAGCACTCTCCA+AGG | - | chr3_1:72365043-72365062 | None:intergenic | 55.0% |
| !! | CTTGGAGAGTGCTCCTCCAA+AGG | + | chr3_1:72365041-72365060 | Msa0373350:intron | 55.0% |
| AGTGCTCCTCCAAAGGTCTC+AGG | + | chr3_1:72365048-72365067 | Msa0373350:intron | 55.0% | |
| ! | GATGGCAAACGCTGTTTCCC+TGG | - | chr3_1:72365204-72365223 | None:intergenic | 55.0% |
| GGGAAACAGCGTTTGCCATC+AGG | + | chr3_1:72365204-72365223 | Msa0373350:CDS | 55.0% | |
| ! | GTTTCTGTCGTGGTGTTGGG+AGG | + | chr3_1:72365300-72365319 | Msa0373350:CDS | 55.0% |
| ! | ACTCTAATGGGCAAGGACGC+TGG | + | chr3_1:72365345-72365364 | Msa0373350:CDS | 55.0% |
| AGACGTACCTACAGGGCTCA+TGG | + | chr3_1:72365622-72365641 | Msa0373350:CDS | 55.0% | |
| GGAAGAGGCTGTCCAGAAAG+AGG | + | chr3_1:72365798-72365817 | Msa0373350:CDS | 55.0% | |
| GGTGGGATTGTCGGGCTCTT+TGG | - | chr3_1:72364101-72364120 | None:intergenic | 60.0% | |
| AAGGTCAGCACCTCTGGCCT+TGG | - | chr3_1:72364237-72364256 | None:intergenic | 60.0% | |
| !! | AGGCCAGAGGTGCTGACCTT+AGG | + | chr3_1:72364237-72364256 | Msa0373350:CDS | 60.0% |
| !! | GGCCAGAGGTGCTGACCTTA+GGG | + | chr3_1:72364238-72364257 | Msa0373350:CDS | 60.0% |
| GGTCAGGGGCAACTTCCTGA+TGG | - | chr3_1:72365222-72365241 | None:intergenic | 60.0% | |
| TCTGTAGCCCGAGACCCAGT+TGG | + | chr3_1:72365899-72365918 | Msa0373350:intron | 60.0% | |
| GGTGGGATTGTCGGGCTCTT+TGG | - | chr3_1:72364101-72364120 | None:intergenic | 60.0% | |
| AAGGTCAGCACCTCTGGCCT+TGG | - | chr3_1:72364237-72364256 | None:intergenic | 60.0% | |
| !! | AGGCCAGAGGTGCTGACCTT+AGG | + | chr3_1:72364237-72364256 | Msa0373350:CDS | 60.0% |
| !! | GGCCAGAGGTGCTGACCTTA+GGG | + | chr3_1:72364238-72364257 | Msa0373350:CDS | 60.0% |
| GGTCAGGGGCAACTTCCTGA+TGG | - | chr3_1:72365222-72365241 | None:intergenic | 60.0% | |
| TCTGTAGCCCGAGACCCAGT+TGG | + | chr3_1:72365899-72365918 | Msa0373350:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 72364007 | 72366230 | 72364007 | ID=Msa0373350;Name=Msa0373350 |
| chr3_1 | mRNA | 72364007 | 72366230 | 72364007 | ID=Msa0373350-mRNA-1;Parent=Msa0373350;Name=Msa0373350-mRNA-1;_AED=0.06;_eAED=0.06;_QI=78|1|1|1|1|1|6|259|182 |
| chr3_1 | exon | 72364007 | 72364124 | 72364007 | ID=Msa0373350-mRNA-1:exon:16076;Parent=Msa0373350-mRNA-1 |
| chr3_1 | exon | 72364231 | 72364271 | 72364231 | ID=Msa0373350-mRNA-1:exon:16077;Parent=Msa0373350-mRNA-1 |
| chr3_1 | exon | 72365197 | 72365427 | 72365197 | ID=Msa0373350-mRNA-1:exon:16078;Parent=Msa0373350-mRNA-1 |
| chr3_1 | exon | 72365553 | 72365655 | 72365553 | ID=Msa0373350-mRNA-1:exon:16079;Parent=Msa0373350-mRNA-1 |
| chr3_1 | exon | 72365752 | 72365819 | 72365752 | ID=Msa0373350-mRNA-1:exon:16080;Parent=Msa0373350-mRNA-1 |
| chr3_1 | exon | 72365906 | 72366230 | 72365906 | ID=Msa0373350-mRNA-1:exon:16081;Parent=Msa0373350-mRNA-1 |
| chr3_1 | five_prime_UTR | 72364007 | 72364084 | 72364007 | ID=Msa0373350-mRNA-1:five_prime_utr;Parent=Msa0373350-mRNA-1 |
| chr3_1 | CDS | 72364085 | 72364124 | 72364085 | ID=Msa0373350-mRNA-1:cds;Parent=Msa0373350-mRNA-1 |
| chr3_1 | CDS | 72364231 | 72364271 | 72364231 | ID=Msa0373350-mRNA-1:cds;Parent=Msa0373350-mRNA-1 |
| chr3_1 | CDS | 72365197 | 72365427 | 72365197 | ID=Msa0373350-mRNA-1:cds;Parent=Msa0373350-mRNA-1 |
| chr3_1 | CDS | 72365553 | 72365655 | 72365553 | ID=Msa0373350-mRNA-1:cds;Parent=Msa0373350-mRNA-1 |
| chr3_1 | CDS | 72365752 | 72365819 | 72365752 | ID=Msa0373350-mRNA-1:cds;Parent=Msa0373350-mRNA-1 |
| chr3_1 | CDS | 72365906 | 72365971 | 72365906 | ID=Msa0373350-mRNA-1:cds;Parent=Msa0373350-mRNA-1 |
| chr3_1 | three_prime_UTR | 72365972 | 72366230 | 72365972 | ID=Msa0373350-mRNA-1:three_prime_utr;Parent=Msa0373350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
