AlfalfaGEDB | Msa1030700

M. sativa cultivar zhongmu-4 / Msa1030700

KEGG: -
GO: GO:0000003 GO:0000151 GO:0000822 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0007154 GO:0007165 GO:0007275 GO:0008144 GO:0008150 GO:0009555 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009908 GO:0009987 GO:0010011 GO:0010033 GO:0010035 GO:0010152 GO:0010167 GO:0016020 GO:0019005 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0031090 GO:0031461 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0036094 GO:0042221 GO:0042562 GO:0043167 GO:0043168 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048527 GO:0048528 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071241 GO:0071249 GO:0071310 GO:0071365 GO:0071495 GO:0080022 GO:0090567 GO:0090696 GO:0098588 GO:0098805 GO:0099402 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1902494 GO:1990234
PFAM: PF18511.4

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1030700	XP_003624463.1	99.299	571	4	0	1	571	1	571	0.0	1172

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1030700	sp\|Q9LPW7\|AFB3_ARATH	74.177	577	143	2	1	571	1	577	0.0	888

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1030700	G7KW81	99.299	571	4	0	1	571	1	571	0.0	1172

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0171760	Msa1030700	0.808274	3.357351e-50	-8.615850e-47
Msa0266690	Msa1030700	0.800706	1.271017e-48	-8.615850e-47
Msa0623070	Msa1030700	0.809622	1.727805e-50	-8.615850e-47
Msa0753720	Msa1030700	0.803903	2.791758e-49	-8.615850e-47
Msa1030700	Msa1120030	0.996241	4.496658e-225	-8.615850e-47
Msa1030700	Msa1148000	0.808028	3.787529e-50	-8.615850e-47
Msa1030700	Msa1221050	0.801560	8.498988e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1030700	MtrunA17_Chr7g0251831	99.299	571	4	0	1	571	1	571	0.0	1172
Msa1030700	MtrunA17_Chr1g0196061	60.000	570	224	3	4	571	14	581	0.0	717
Msa1030700	MtrunA17_Chr8g0387211	55.846	573	238	5	6	571	9	573	0.0	643
Msa1030700	MtrunA17_Chr4g0048391	54.737	570	249	3	4	571	26	588	0.0	635
Msa1030700	MtrunA17_Chr5g0427061	50.433	577	270	6	4	571	47	616	0.0	573
Msa1030700	MtrunA17_Chr3g0133241	50.000	576	269	7	8	571	25	593	0.0	560
Msa1030700	MtrunA17_Chr5g0436511	33.162	582	361	12	6	571	13	582	1.26e-90	290
Msa1030700	MtrunA17_Chr3g0113151	31.525	590	369	13	2	568	13	590	2.50e-79	261
Msa1030700	MtrunA17_Chr8g0364131	29.965	564	309	16	28	571	9	506	1.07e-61	212
Msa1030700	MtrunA17_Chr5g0439771	79.048	105	17	1	32	131	17	121	1.83e-51	172

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1030700	AT1G12820.1	74.177	577	143	2	1	571	1	577	0.0	888
Msa1030700	AT3G26810.1	75.521	576	135	3	1	571	1	575	0.0	886
Msa1030700	AT3G62980.1	59.825	570	225	3	4	571	9	576	0.0	699
Msa1030700	AT4G03190.1	56.491	570	243	3	4	571	5	571	0.0	662
Msa1030700	AT5G49980.1	50.694	576	270	6	4	571	50	619	0.0	569
Msa1030700	AT4G24390.2	49.912	569	281	3	6	571	56	623	0.0	559
Msa1030700	AT4G24390.1	49.912	569	281	3	6	571	56	623	0.0	559
Msa1030700	AT2G39940.1	30.875	583	374	12	6	571	18	588	1.09e-90	291
Msa1030700	AT4G15475.1	24.904	522	335	16	2	498	9	498	9.22e-26	112
Msa1030700	AT4G15475.1	24.868	378	255	12	112	482	231	586	1.12e-13	74.3

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Find 145 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTCCACATTCAACCT+CGG	0.622596	7_1:+64880707	None:intergenic
AAACTAAAATCAGCAAAATG+AGG	0.583106	7_1:+64883030	None:intergenic
AAAGTTAAAGATTTCAGATC+AGG	0.376006	7_1:+64883063	None:intergenic
AAATTGGATAGATAGCTGCA+AGG	0.697831	7_1:+64881710	None:intergenic
AACAGCAGCAAGGCCATCAG+TGG	0.621907	7_1:+64882828	None:intergenic
AACATATTAATGAAGTGAAG+TGG	0.565155	7_1:+64880391	None:intergenic
AACCTAAATCGGATAAAATT+TGG	0.111020	7_1:+64881109	None:intergenic
AACCTAAGACTCTTAAGGTT+AGG	0.447401	7_1:+64881919	None:intergenic
AACCTCTCCACCAACCTCTC+AGG	0.489862	7_1:+64883087	None:intergenic
AAGAACGAGAAAGTAGCTCA+AGG	0.658755	7_1:+64882896	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAAGATAGAAAACACG+TGG	+	chr7_1:64880445-64880464	None:intergenic	30.0%
TCCACAAAAGTTGTGAAATT+TGG	-	chr7_1:64880490-64880509	Msa1030700:three_prime_UTR	30.0%
TATCATTTCTAACCTGCAAT+TGG	+	chr7_1:64880988-64881007	None:intergenic	30.0%
TGCCTACAAAACTAAACATA+GGG	+	chr7_1:64881344-64881363	None:intergenic	30.0%
ATGCCTACAAAACTAAACAT+AGG	+	chr7_1:64881345-64881364	None:intergenic	30.0%
TTGCTTGTATTACATTTCAG+AGG	-	chr7_1:64881434-64881453	Msa1030700:intron	30.0%
TGCTTGTATTACATTTCAGA+GGG	-	chr7_1:64881435-64881454	Msa1030700:intron	30.0%
ATACAAACAAGATAATCCCT+AGG	+	chr7_1:64881551-64881570	None:intergenic	30.0%
AATGAAGTTGAAGATCACAA+AGG	-	chr7_1:64881732-64881751	Msa1030700:CDS	30.0%
TGTTTAACCTAAGACTCTTA+AGG	+	chr7_1:64881875-64881894	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	64880342	64883466	64880342	ID=Msa1030700;Name=Msa1030700
chr7_1	mRNA	64880342	64883466	64880342	ID=Msa1030700-mRNA-1;Parent=Msa1030700;Name=Msa1030700-mRNA-1;_AED=0.15;_eAED=0.15;_QI=118\|1\|0.75\|1\|0.66\|0.5\|4\|244\|571
chr7_1	exon	64880342	64881353	64880342	ID=Msa1030700-mRNA-1:exon:14302;Parent=Msa1030700-mRNA-1
chr7_1	exon	64881609	64882104	64881609	ID=Msa1030700-mRNA-1:exon:14301;Parent=Msa1030700-mRNA-1
chr7_1	exon	64882814	64883308	64882814	ID=Msa1030700-mRNA-1:exon:14300;Parent=Msa1030700-mRNA-1
chr7_1	exon	64883392	64883466	64883392	ID=Msa1030700-mRNA-1:exon:14299;Parent=Msa1030700-mRNA-1
chr7_1	five_prime_UTR	64883392	64883466	64883392	ID=Msa1030700-mRNA-1:five_prime_utr;Parent=Msa1030700-mRNA-1
chr7_1	five_prime_UTR	64883266	64883308	64883266	ID=Msa1030700-mRNA-1:five_prime_utr;Parent=Msa1030700-mRNA-1
chr7_1	CDS	64882814	64883265	64882814	ID=Msa1030700-mRNA-1:cds;Parent=Msa1030700-mRNA-1
chr7_1	CDS	64881609	64882104	64881609	ID=Msa1030700-mRNA-1:cds;Parent=Msa1030700-mRNA-1
chr7_1	CDS	64880586	64881353	64880586	ID=Msa1030700-mRNA-1:cds;Parent=Msa1030700-mRNA-1
chr7_1	three_prime_UTR	64880342	64880585	64880342	ID=Msa1030700-mRNA-1:three_prime_utr;Parent=Msa1030700-mRNA-1

Gene Sequence

>Msa1030700

ATGAATTATTTCCCTGACGAGGTAATAGAACATGTTTTTGACTATGTGGTTTCACATAGTGACAGAAACTCTTTGTCTTTGGTATGCAAAAGTTGGTATAGAATAGAGAGATTTACAAGACAAAGAGTTTTCATAGGAAACTGTTACTCTATTAGTCCTGAGAGGTTGGTGGAGAGGTTTCCTGATCTGAAATCTTTAACTTTGAAGGGAAAACCTCATTTTGCTGATTTTAGTTTGGTTCCTCATGGTTGGGGTGGTTTTGTTTATCCATGGATTGAAGCACTTGCTAAGAATAAGGTTGGTTTGGAGGAACTTAGGTTGAAGAGGATGGTTGTGTCAGATGAGAGCCTTGAGCTACTTTCTCGTTCTTTTGTGAATTTTAAGTCTTTAGTTCTTGTTAGCTGTGAAGGGTTCACCACTGATGGCCTTGCTGCTGTTGCTGCCAATTGCAGGTCTCTTAGGGAGCTAGACCTGCAAGAGAATGAAGTTGAAGATCACAAAGGACAGTGGCTAAGTTGCTTTCCAGAGAGCTGCACATCACTTGTCTCTCTTAATTTCGCTTGCCTTAAAGGTGATATTAATTTGGGAGCACTTGAGAGACTTGTGGCAAGATCTCCTAACCTTAAGAGTCTTAGGTTAAACAGATCTGTGCCTGTCGATGCACTGCAAAGGATACTAATGCGAGCACCTCAACTAATGGATTTGGGAATTGGATCATTTTTCCATGATCTCAATTCAGATGCCTATGCTAAGTTTAAGGCCACCATTCTTAAGTGCAAGTCAATAACCAGTTTGTCAGGGTTTTTGGAAGTGGCTCCTTTTAGCCTTGCAGCTATCTATCCAATTTGCCAGAACTTAACATCCTTGAACTTGAGCTATGCAGCAGGCATTTTGGGCATTGAGCTAATAAAACTTATTCGCCACTGTGGGAAACTACAGCGCTTATGGATAATGGATCGCATTGGAGACTTGGGACTAGGTGTTGTAGCTAGCACATGTAAAGAATTGCAAGAATTAAGGGTTTTCCCATCAGCTCCATTTGGAAACCAAGCGGCTGTTACCGAAAAAGGACTTGTAGCGATATCAATGGGATGTCCTAAGCTTCACTCATTACTCTACTTCTGTCACCAGATGACCAATGCTGCTCTCATAACAGTGGCCAAAAACTGCCCAAATTTTATCCGATTTAGGTTATGTATCCTTGATGCAACAAAACCTGACCCTGACACAATGCAGCCACTAGATGAAGGTTTTGGGGCGATTGTGCAGTCATGCAAGCGACTGAGGCGGCTATCGCTCTCGGGTCAGTTGACCGACCAGGTTTTCCTTTACATCGGAATGTACGCTGAGCAGCTTGAAATGTTGTCTATTGCATTTGCTGGTGAGAGTGACAAGGGAATGCTCTATGTATTGAACGGATGCAAAAAGATTCGCAAGCTTGAGATTAGAGACTGTCCATTCGGAGACACGGCGCTTCTAACAGACATAGGGAAGTATGAAACAATGCGATCCCTTTGGATGTCGTCGTGCGAGGTGACTGTAGAAGCTTGCAAGACATTGGCTAAGAAGATGCCGAGGTTGAATGTGGAGATTTTCAGTGAAAGTGAACAGGCAGATTGTTATGTGGAAGATGGACAGAGAGTAGAGAAGATGTATTTGTATCGTACAGTGGCTGGGAAAAGGGAGGATGCACCAGACTATGTATGGACTCTGTAG

Protein sequence

>Msa1030700

MNYFPDEVIEHVFDYVVSHSDRNSLSLVCKSWYRIERFTRQRVFIGNCYSISPERLVERFPDLKSLTLKGKPHFADFSLVPHGWGGFVYPWIEALAKNKVGLEELRLKRMVVSDESLELLSRSFVNFKSLVLVSCEGFTTDGLAAVAANCRSLRELDLQENEVEDHKGQWLSCFPESCTSLVSLNFACLKGDINLGALERLVARSPNLKSLRLNRSVPVDALQRILMRAPQLMDLGIGSFFHDLNSDAYAKFKATILKCKSITSLSGFLEVAPFSLAAIYPICQNLTSLNLSYAAGILGIELIKLIRHCGKLQRLWIMDRIGDLGLGVVASTCKELQELRVFPSAPFGNQAAVTEKGLVAISMGCPKLHSLLYFCHQMTNAALITVAKNCPNFIRFRLCILDATKPDPDTMQPLDEGFGAIVQSCKRLRRLSLSGQLTDQVFLYIGMYAEQLEMLSIAFAGESDKGMLYVLNGCKKIRKLEIRDCPFGDTALLTDIGKYETMRSLWMSSCEVTVEACKTLAKKMPRLNVEIFSESEQADCYVEDGQRVEKMYLYRTVAGKREDAPDYVWTL*