Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1120030 | XP_003624463.1 | 99.299 | 571 | 4 | 0 | 1 | 571 | 1 | 571 | 0.0 | 1172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1120030 | sp|Q9LPW7|AFB3_ARATH | 74.177 | 577 | 143 | 2 | 1 | 571 | 1 | 577 | 0.0 | 888 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1120030 | G7KW81 | 99.299 | 571 | 4 | 0 | 1 | 571 | 1 | 571 | 0.0 | 1172 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0623070 | Msa1120030 | 0.803273 | 3.772166e-49 | -8.615850e-47 |
| Msa0171760 | Msa1120030 | 0.807990 | 3.859342e-50 | -8.615850e-47 |
| Msa1030700 | Msa1120030 | 0.996241 | 4.496658e-225 | -8.615850e-47 |
| Msa0266690 | Msa1120030 | 0.806427 | 8.269191e-50 | -8.615850e-47 |
| Msa1120030 | Msa1148000 | 0.810962 | 8.881739e-51 | -8.615850e-47 |
| Msa1120030 | Msa1157930 | -0.811022 | 8.617634e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1120030 | MtrunA17_Chr7g0251831 | 99.299 | 571 | 4 | 0 | 1 | 571 | 1 | 571 | 0.0 | 1172 |
| Msa1120030 | MtrunA17_Chr1g0196061 | 60.000 | 570 | 224 | 3 | 4 | 571 | 14 | 581 | 0.0 | 717 |
| Msa1120030 | MtrunA17_Chr8g0387211 | 55.846 | 573 | 238 | 5 | 6 | 571 | 9 | 573 | 0.0 | 643 |
| Msa1120030 | MtrunA17_Chr4g0048391 | 54.737 | 570 | 249 | 3 | 4 | 571 | 26 | 588 | 0.0 | 635 |
| Msa1120030 | MtrunA17_Chr5g0427061 | 50.433 | 577 | 270 | 6 | 4 | 571 | 47 | 616 | 0.0 | 573 |
| Msa1120030 | MtrunA17_Chr3g0133241 | 50.000 | 576 | 269 | 7 | 8 | 571 | 25 | 593 | 0.0 | 560 |
| Msa1120030 | MtrunA17_Chr5g0436511 | 33.162 | 582 | 361 | 12 | 6 | 571 | 13 | 582 | 1.26e-90 | 290 |
| Msa1120030 | MtrunA17_Chr3g0113151 | 31.525 | 590 | 369 | 13 | 2 | 568 | 13 | 590 | 2.50e-79 | 261 |
| Msa1120030 | MtrunA17_Chr8g0364131 | 29.965 | 564 | 309 | 16 | 28 | 571 | 9 | 506 | 1.07e-61 | 212 |
| Msa1120030 | MtrunA17_Chr5g0439771 | 79.048 | 105 | 17 | 1 | 32 | 131 | 17 | 121 | 1.83e-51 | 172 |
| Msa1120030 | MtrunA17_Chr2g0286991 | 23.746 | 598 | 355 | 20 | 4 | 527 | 11 | 581 | 1.96e-24 | 107 |
| Msa1120030 | MtrunA17_Chr2g0286991 | 24.124 | 485 | 273 | 17 | 56 | 480 | 135 | 584 | 1.69e-15 | 79.7 |
| Msa1120030 | MtrunA17_Chr1g0152951 | 24.402 | 418 | 231 | 11 | 1 | 409 | 61 | 402 | 1.81e-14 | 76.3 |
| Msa1120030 | MtrunA17_Chr4g0053361 | 26.218 | 431 | 243 | 20 | 1 | 398 | 40 | 428 | 1.24e-13 | 73.6 |
| Msa1120030 | MtrunA17_Chr7g0272131 | 22.674 | 516 | 319 | 20 | 3 | 492 | 48 | 509 | 7.20e-12 | 68.2 |
| Msa1120030 | MtrunA17_Chr7g0272131 | 26.537 | 309 | 173 | 11 | 177 | 478 | 361 | 622 | 6.62e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1120030 | AT1G12820.1 | 74.177 | 577 | 143 | 2 | 1 | 571 | 1 | 577 | 0.0 | 888 |
| Msa1120030 | AT3G26810.1 | 75.521 | 576 | 135 | 3 | 1 | 571 | 1 | 575 | 0.0 | 886 |
| Msa1120030 | AT3G62980.1 | 59.825 | 570 | 225 | 3 | 4 | 571 | 9 | 576 | 0.0 | 699 |
| Msa1120030 | AT4G03190.1 | 56.491 | 570 | 243 | 3 | 4 | 571 | 5 | 571 | 0.0 | 662 |
| Msa1120030 | AT5G49980.1 | 50.694 | 576 | 270 | 6 | 4 | 571 | 50 | 619 | 0.0 | 569 |
| Msa1120030 | AT4G24390.2 | 49.912 | 569 | 281 | 3 | 6 | 571 | 56 | 623 | 0.0 | 559 |
| Msa1120030 | AT4G24390.1 | 49.912 | 569 | 281 | 3 | 6 | 571 | 56 | 623 | 0.0 | 559 |
| Msa1120030 | AT2G39940.1 | 30.875 | 583 | 374 | 12 | 6 | 571 | 18 | 588 | 1.09e-90 | 291 |
| Msa1120030 | AT4G15475.1 | 24.904 | 522 | 335 | 16 | 2 | 498 | 9 | 498 | 9.22e-26 | 112 |
| Msa1120030 | AT4G15475.1 | 24.868 | 378 | 255 | 12 | 112 | 482 | 231 | 586 | 1.12e-13 | 74.3 |
| Msa1120030 | AT1G47056.1 | 25.616 | 406 | 263 | 16 | 4 | 398 | 43 | 420 | 3.56e-12 | 69.3 |
| Msa1120030 | AT2G25490.1 | 23.583 | 547 | 314 | 23 | 1 | 492 | 64 | 561 | 2.52e-11 | 67.0 |
Find 145 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAATTAATATCACCTTTA+AGG | 0.044500 | 7_3:-69238499 | None:intergenic |
| CTTAATTTCGCTTGCCTTAA+AGG | 0.058984 | 7_3:+69238485 | Msa1120030:CDS |
| TCCACAAAAGTTGTGAAATT+TGG | 0.075176 | 7_3:+69237174 | Msa1120030:intron |
| AACCTAAATCGGATAAAATT+TGG | 0.111020 | 7_3:-69239361 | None:intergenic |
| CCTTAAAGGTGATATTAATT+TGG | 0.171878 | 7_3:+69238499 | Msa1120030:CDS |
| GTAAAGAATTGCAAGAATTA+AGG | 0.183750 | 7_3:+69239188 | Msa1120030:CDS |
| TGTTGAAATGTAGGTCTCTT+AGG | 0.191405 | 7_3:+69238375 | Msa1120030:intron |
| AGATGCCTATGCTAAGTTTA+AGG | 0.202777 | 7_3:+69238673 | Msa1120030:CDS |
| GAGCTATGCAGCAGGCATTT+TGG | 0.216244 | 7_3:+69238808 | Msa1120030:CDS |
| CTTCAACTTCATTCTCTTGC+AGG | 0.226329 | 7_3:-69238406 | None:intergenic |
| CTGCTGTTGCTGCCAATTGC+AGG | 0.239726 | 7_3:+69237657 | Msa1120030:CDS |
| CAACTAATGGATTTGGGAAT+TGG | 0.245004 | 7_3:+69238626 | Msa1120030:CDS |
| CAGCCACTAGATGAAGGTTT+TGG | 0.253449 | 7_3:+69239424 | Msa1120030:CDS |
| CAAGCGGCTGTTACCGAAAA+AGG | 0.261832 | 7_3:+69239238 | Msa1120030:CDS |
| GTGGGAAACTACAGCGCTTA+TGG | 0.280886 | 7_3:+69238861 | Msa1120030:CDS |
| CTCCTAACCTTAAGAGTCTT+AGG | 0.290388 | 7_3:+69238549 | Msa1120030:CDS |
| AAGCTGTTTGTACTTTGTTT+AGG | 0.298277 | 7_3:+69239954 | Msa1120030:three_prime_UTR |
| AGCACCTCAACTAATGGATT+TGG | 0.298955 | 7_3:+69238619 | Msa1120030:CDS |
| TGCTAAGAATAAGGTTGGTT+TGG | 0.312116 | 7_3:+69237511 | Msa1120030:CDS |
| CTTAAAGGTGATATTAATTT+GGG | 0.314737 | 7_3:+69238500 | Msa1120030:CDS |
| TAGTTTGGTTCCTCATGGTT+GGG | 0.318544 | 7_3:+69237457 | Msa1120030:CDS |
| TGACAGAAACTCTTTGTCTT+TGG | 0.323445 | 7_3:+69237286 | Msa1120030:CDS |
| TAAAGAATTGCAAGAATTAA+GGG | 0.324072 | 7_3:+69239189 | Msa1120030:CDS |
| TAGATAGCTGCAAGGCTAAA+AGG | 0.333441 | 7_3:-69238752 | None:intergenic |
| TGAAGCACTTGCTAAGAATA+AGG | 0.333907 | 7_3:+69237502 | Msa1120030:CDS |
| GATGTTAAGTTCTGGCAAAT+TGG | 0.351644 | 7_3:-69238776 | None:intergenic |
| TCTAGTGGCTGCATTGTGTC+AGG | 0.354848 | 7_3:-69239412 | None:intergenic |
| ACATGTTCTATTACCTCGTC+AGG | 0.355570 | 7_3:-69237239 | None:intergenic |
| ACCTAAATCGGATAAAATTT+GGG | 0.367218 | 7_3:-69239360 | None:intergenic |
| GGCTGCATTGTGTCAGGGTC+AGG | 0.372008 | 7_3:-69239406 | None:intergenic |
| AAAGTTAAAGATTTCAGATC+AGG | 0.376006 | 7_3:-69237407 | None:intergenic |
| TCTGAAATCTTTAACTTTGA+AGG | 0.377635 | 7_3:+69237412 | Msa1120030:CDS |
| TGTTTAACCTAAGACTCTTA+AGG | 0.378207 | 7_3:-69238556 | None:intergenic |
| TTAGTTCTTGTTAGCTGTGA+AGG | 0.381060 | 7_3:+69237614 | Msa1120030:CDS |
| CAAGGATACATAACCTAAAT+CGG | 0.388537 | 7_3:-69239372 | None:intergenic |
| TGAGAGCAGCATTGGTCATC+TGG | 0.390786 | 7_3:-69239318 | None:intergenic |
| AATGCGAGCACCTCAACTAA+TGG | 0.395557 | 7_3:+69238613 | Msa1120030:CDS |
| AAGTCAATAACCAGTTTGTC+AGG | 0.399205 | 7_3:+69238713 | Msa1120030:CDS |
| ATGTTGTCTATTGCATTTGC+TGG | 0.406493 | 7_3:+69239550 | Msa1120030:CDS |
| TTAGTTTGGTTCCTCATGGT+TGG | 0.407238 | 7_3:+69237456 | Msa1120030:CDS |
| GTTGAAATGTAGGTCTCTTA+GGG | 0.408186 | 7_3:+69238376 | Msa1120030:intron |
| ACAAGTGATGTGCAGCTCTC+TGG | 0.409385 | 7_3:-69238458 | None:intergenic |
| AGGTTGGTTTGGAGGAACTT+AGG | 0.414550 | 7_3:+69237522 | Msa1120030:CDS |
| ATCGTACAGTGGCTGGGAAA+AGG | 0.418126 | 7_3:+69239851 | Msa1120030:CDS |
| TAGAGTAATGAGTGAAGCTT+AGG | 0.419726 | 7_3:-69239286 | None:intergenic |
| TGGGAAACTACAGCGCTTAT+GGG | 0.420323 | 7_3:+69238862 | Msa1120030:CDS |
| GCACCTCAACTAATGGATTT+GGG | 0.425041 | 7_3:+69238620 | Msa1120030:CDS |
| CTGAAATCTTTAACTTTGAA+GGG | 0.431379 | 7_3:+69237413 | Msa1120030:CDS |
| TATCATTTCTAACCTGCAAT+TGG | 0.436005 | 7_3:-69237669 | None:intergenic |
| AATGGATCGCATTGGAGACT+TGG | 0.437652 | 7_3:+69239141 | Msa1120030:CDS |
| TATTTGTATCGTACAGTGGC+TGG | 0.438724 | 7_3:+69239844 | Msa1120030:CDS |
| TAGTCCCTCCGGATATTTAG+TGG | 0.444238 | 7_3:+69239997 | Msa1120030:three_prime_UTR |
| CTCTATTAGTCCTGAGAGGT+TGG | 0.445130 | 7_3:+69237373 | Msa1120030:CDS |
| TAAGAATAAGGTTGGTTTGG+AGG | 0.445339 | 7_3:+69237514 | Msa1120030:CDS |
| AACCTAAGACTCTTAAGGTT+AGG | 0.447401 | 7_3:-69238551 | None:intergenic |
| ATGAAACAATGCGATCCCTT+TGG | 0.454128 | 7_3:+69239686 | Msa1120030:CDS |
| TGTCTTTGGTATGCAAAAGT+TGG | 0.456705 | 7_3:+69237300 | Msa1120030:CDS |
| ACTGAGGCGGCTATCGCTCT+CGG | 0.457325 | 7_3:+69239471 | Msa1120030:CDS |
| CACTGTTATGAGAGCAGCAT+TGG | 0.458095 | 7_3:-69239326 | None:intergenic |
| TGCTGCATAGCTCAAGTTCA+AGG | 0.458884 | 7_3:-69238798 | None:intergenic |
| TAGTTCTTGTTAGCTGTGAA+GGG | 0.462515 | 7_3:+69237615 | Msa1120030:CDS |
| AGTTCAAGGATGTTAAGTTC+TGG | 0.465857 | 7_3:-69238784 | None:intergenic |
| AGTTTGGTTCCTCATGGTTG+GGG | 0.466110 | 7_3:+69237458 | Msa1120030:CDS |
| TTAGCAAGTGCTTCAATCCA+TGG | 0.473895 | 7_3:-69237494 | None:intergenic |
| TCGTACAGTGGCTGGGAAAA+GGG | 0.479007 | 7_3:+69239852 | Msa1120030:CDS |
| TACAGAGTCCATACATAGTC+TGG | 0.481632 | 7_3:-69239883 | None:intergenic |
| GGACTTGTAGCGATATCAAT+GGG | 0.483963 | 7_3:+69239259 | Msa1120030:CDS |
| AGTACAAACCACTAAATATC+CGG | 0.489400 | 7_3:-69240005 | None:intergenic |
| TGGTTTCCAAATGGAGCTGA+TGG | 0.489802 | 7_3:-69239217 | None:intergenic |
| AACCTCTCCACCAACCTCTC+AGG | 0.489862 | 7_3:-69237383 | None:intergenic |
| AGGATGCACCAGACTATGTA+TGG | 0.494622 | 7_3:+69239875 | Msa1120030:CDS |
| GCACTTGCTAAGAATAAGGT+TGG | 0.496983 | 7_3:+69237506 | Msa1120030:CDS |
| ATCCTTTGCAGTGCATCGAC+AGG | 0.498123 | 7_3:-69238587 | None:intergenic |
| CGCATTGGAGACTTGGGACT+AGG | 0.501929 | 7_3:+69239148 | Msa1120030:CDS |
| TATTGACTTGCACTTAAGAA+TGG | 0.502436 | 7_3:-69238699 | None:intergenic |
| CTCGGGTCAGTTGACCGACC+AGG | 0.507850 | 7_3:+69239489 | Msa1120030:CDS |
| GAGATTAGAGACTGTCCATT+CGG | 0.509013 | 7_3:+69239631 | Msa1120030:CDS |
| TGGAGGAACTTAGGTTGAAG+AGG | 0.518144 | 7_3:+69237531 | Msa1120030:CDS |
| GGAACTTAGGTTGAAGAGGA+TGG | 0.518519 | 7_3:+69237535 | Msa1120030:CDS |
| TTGGTTCCTCATGGTTGGGG+TGG | 0.518779 | 7_3:+69237461 | Msa1120030:CDS |
| TTTCCACTTCAATTTCAAAA+GGG | 0.521397 | 7_3:+69237071 | Msa1120030:five_prime_UTR |
| CTGAGGCGGCTATCGCTCTC+GGG | 0.522103 | 7_3:+69239472 | Msa1120030:CDS |
| CAGCGTACATTCCGATGTAA+AGG | 0.526342 | 7_3:-69239516 | None:intergenic |
| AGGACTTGTAGCGATATCAA+TGG | 0.526593 | 7_3:+69239258 | Msa1120030:CDS |
| AGGCATCTGAATTGAGATCA+TGG | 0.529060 | 7_3:-69238658 | None:intergenic |
| ACGGCGCTTCTAACAGACAT+AGG | 0.529179 | 7_3:+69239658 | Msa1120030:CDS |
| GTCCTGAGAGGTTGGTGGAG+AGG | 0.530368 | 7_3:+69237381 | Msa1120030:CDS |
| ACAGCCGCTTGGTTTCCAAA+TGG | 0.532377 | 7_3:-69239226 | None:intergenic |
| GCAGATTGTTATGTGGAAGA+TGG | 0.540696 | 7_3:+69239802 | Msa1120030:CDS |
| TGTGAAGGGTTCACCACTGA+TGG | 0.542297 | 7_3:+69237629 | Msa1120030:CDS |
| TATTAGTCCTGAGAGGTTGG+TGG | 0.552035 | 7_3:+69237376 | Msa1120030:CDS |
| TGTAGAAGCTTGCAAGACAT+TGG | 0.559670 | 7_3:+69239729 | Msa1120030:CDS |
| CCTCGCACGACGACATCCAA+AGG | 0.564820 | 7_3:-69239702 | None:intergenic |
| AACATATTAATGAAGTGAAG+TGG | 0.565155 | 7_3:-69240076 | None:intergenic |
| CTAGTGGCTGCATTGTGTCA+GGG | 0.572015 | 7_3:-69239411 | None:intergenic |
| CTCGCACGACGACATCCAAA+GGG | 0.573327 | 7_3:-69239701 | None:intergenic |
| TTGAACTTGAGCTATGCAGC+AGG | 0.574209 | 7_3:+69238800 | Msa1120030:CDS |
| ATGGATCGCATTGGAGACTT+GGG | 0.574539 | 7_3:+69239142 | Msa1120030:CDS |
| GGTTTCCAAATGGAGCTGAT+GGG | 0.578326 | 7_3:-69239216 | None:intergenic |
| ACAATGCAGCCACTAGATGA+AGG | 0.580797 | 7_3:+69239418 | Msa1120030:CDS |
| AAACTAAAATCAGCAAAATG+AGG | 0.583106 | 7_3:-69237440 | None:intergenic |
| TGACTTGCACTTAAGAATGG+TGG | 0.584011 | 7_3:-69238696 | None:intergenic |
| TGCAGTCATGCAAGCGACTG+AGG | 0.586298 | 7_3:+69239455 | Msa1120030:CDS |
| CGGCGCTTCTAACAGACATA+GGG | 0.589191 | 7_3:+69239659 | Msa1120030:CDS |
| ATTTGTATCGTACAGTGGCT+GGG | 0.590955 | 7_3:+69239845 | Msa1120030:CDS |
| CATGAATTATTTCCCTGACG+AGG | 0.597901 | 7_3:+69237226 | Msa1120030:exon |
| TTCCGATGTAAAGGAAAACC+TGG | 0.600089 | 7_3:-69239507 | None:intergenic |
| CCTTTGGATGTCGTCGTGCG+AGG | 0.601956 | 7_3:+69239702 | Msa1120030:CDS |
| AGTCAATAACCAGTTTGTCA+GGG | 0.602412 | 7_3:+69238714 | Msa1120030:CDS |
| GAAGATGCCGAGGTTGAATG+TGG | 0.604525 | 7_3:+69239756 | Msa1120030:CDS |
| TTGCAGATAATGGATCGCAT+TGG | 0.604842 | 7_3:+69239133 | Msa1120030:intron |
| ATTCCCAAATCCATTAGTTG+AGG | 0.605945 | 7_3:-69238623 | None:intergenic |
| TAAAACTTATTCGCCACTGT+GGG | 0.605959 | 7_3:+69238843 | Msa1120030:CDS |
| GGGAGCACTTGAGAGACTTG+TGG | 0.606863 | 7_3:+69238520 | Msa1120030:CDS |
| GCCCCAAAACCTTCATCTAG+TGG | 0.610150 | 7_3:-69239427 | None:intergenic |
| TGAACAGGCAGATTGTTATG+TGG | 0.618273 | 7_3:+69239795 | Msa1120030:CDS |
| AGACTATGTATGGACTCTGT+AGG | 0.618728 | 7_3:+69239885 | Msa1120030:CDS |
| AACAGCAGCAAGGCCATCAG+TGG | 0.621907 | 7_3:-69237642 | None:intergenic |
| GGAATGCTCTATGTATTGAA+CGG | 0.622115 | 7_3:+69239586 | Msa1120030:CDS |
| AAAATCTCCACATTCAACCT+CGG | 0.622596 | 7_3:-69239763 | None:intergenic |
| GGTGGCCTTAAACTTAGCAT+AGG | 0.624275 | 7_3:-69238678 | None:intergenic |
| AGAAGCGCCGTGTCTCCGAA+TGG | 0.629129 | 7_3:-69239646 | None:intergenic |
| AGACTGTCCATTCGGAGACA+CGG | 0.631141 | 7_3:+69239639 | Msa1120030:CDS |
| GATGTAAAGGAAAACCTGGT+CGG | 0.635695 | 7_3:-69239503 | None:intergenic |
| CATGTTCTATTACCTCGTCA+GGG | 0.638356 | 7_3:-69237238 | None:intergenic |
| TGCCTGTCGATGCACTGCAA+AGG | 0.644755 | 7_3:+69238585 | Msa1120030:CDS |
| AGTCATGCAAGCGACTGAGG+CGG | 0.651632 | 7_3:+69239458 | Msa1120030:CDS |
| GATGTATTTGTATCGTACAG+TGG | 0.656726 | 7_3:+69239840 | Msa1120030:CDS |
| AAGAACGAGAAAGTAGCTCA+AGG | 0.658755 | 7_3:-69237574 | None:intergenic |
| ACAAACCACTAAATATCCGG+AGG | 0.660891 | 7_3:-69240002 | None:intergenic |
| GTTACTCTATTAGTCCTGAG+AGG | 0.667341 | 7_3:+69237369 | Msa1120030:CDS |
| ATTTGCTGGTGAGAGTGACA+AGG | 0.667952 | 7_3:+69239564 | Msa1120030:CDS |
| TACAGTGGCTGGGAAAAGGG+AGG | 0.670660 | 7_3:+69239855 | Msa1120030:CDS |
| AATGAAGTTGAAGATCACAA+AGG | 0.677519 | 7_3:+69238416 | Msa1120030:CDS |
| AGCTCCATTTGGAAACCAAG+CGG | 0.677710 | 7_3:+69239222 | Msa1120030:CDS |
| TTGAAGATCACAAAGGACAG+TGG | 0.687258 | 7_3:+69238423 | Msa1120030:CDS |
| CATTGGCTAAGAAGATGCCG+AGG | 0.696683 | 7_3:+69239746 | Msa1120030:CDS |
| AAATTGGATAGATAGCTGCA+AGG | 0.697831 | 7_3:-69238760 | None:intergenic |
| CAAACCACTAAATATCCGGA+GGG | 0.700472 | 7_3:-69240001 | None:intergenic |
| ATAAAACTTATTCGCCACTG+TGG | 0.702261 | 7_3:+69238842 | Msa1120030:CDS |
| AATTGGCAGCAACAGCAGCA+AGG | 0.702589 | 7_3:-69237652 | None:intergenic |
| CAATGCTGCTCTCATAACAG+TGG | 0.702948 | 7_3:+69239327 | Msa1120030:CDS |
| ACAAAACCACCCCAACCATG+AGG | 0.706550 | 7_3:-69237467 | None:intergenic |
| AGCGCTGTAGTTTCCCACAG+TGG | 0.730993 | 7_3:-69238856 | None:intergenic |
| TTTGCTGGTGAGAGTGACAA+GGG | 0.735394 | 7_3:+69239565 | Msa1120030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACTTTTTATTCATTTTAAA+TGG | - | chr7_3:69238064-69238083 | None:intergenic | 10.0% |
| !!! | TATGTTTAAGAATTTGTTTT+TGG | + | chr7_3:69237739-69237758 | Msa1120030:intron | 15.0% |
| !!! | ATTTGATGGTTTTTATTTTT+AGG | + | chr7_3:69237816-69237835 | Msa1120030:intron | 15.0% |
| !!! | ATCAAATTTCTATTTTTTGA+TGG | + | chr7_3:69237906-69237925 | Msa1120030:intron | 15.0% |
| !!! | ATTTTTTGATGGATTTTTGT+TGG | + | chr7_3:69237917-69237936 | Msa1120030:intron | 20.0% |
| !!! | AAAAAAAAAGCACATCTATT+TGG | - | chr7_3:69238099-69238118 | None:intergenic | 20.0% |
| !! | TTGTTTGTATGTGATAAATA+TGG | + | chr7_3:69238245-69238264 | Msa1120030:intron | 20.0% |
| !! | TGTTTGTATGTGATAAATAT+GGG | + | chr7_3:69238246-69238265 | Msa1120030:intron | 20.0% |
| !! | CTTAAAGGTGATATTAATTT+GGG | + | chr7_3:69238500-69238519 | Msa1120030:CDS | 20.0% |
| !! | ATAATTAATGTTGCAGATAA+TGG | + | chr7_3:69239123-69239142 | Msa1120030:intron | 20.0% |
| !! | TAAAGAATTGCAAGAATTAA+GGG | + | chr7_3:69239189-69239208 | Msa1120030:CDS | 20.0% |
| ! | TGAAATTGAAGTGGAAAAAA+CGG | - | chr7_3:69237068-69237087 | None:intergenic | 25.0% |
| !! | TTTTCCACTTCAATTTCAAA+AGG | + | chr7_3:69237070-69237089 | Msa1120030:five_prime_UTR | 25.0% |
| ! | TTTCCACTTCAATTTCAAAA+GGG | + | chr7_3:69237071-69237090 | Msa1120030:five_prime_UTR | 25.0% |
| ! | AAAGTTAAAGATTTCAGATC+AGG | - | chr7_3:69237410-69237429 | None:intergenic | 25.0% |
| !! | TCTGAAATCTTTAACTTTGA+AGG | + | chr7_3:69237412-69237431 | Msa1120030:CDS | 25.0% |
| !! | CTGAAATCTTTAACTTTGAA+GGG | + | chr7_3:69237413-69237432 | Msa1120030:CDS | 25.0% |
| ! | AAACTAAAATCAGCAAAATG+AGG | - | chr7_3:69237443-69237462 | None:intergenic | 25.0% |
| !!! | TCATTTTGCTGATTTTAGTT+TGG | + | chr7_3:69237442-69237461 | Msa1120030:CDS | 25.0% |
| !!! | TTGACTTTGTTTTTACCATA+TGG | + | chr7_3:69237767-69237786 | Msa1120030:intron | 25.0% |
| ! | ACCATCAAATCAAAATTGTA+CGG | - | chr7_3:69237806-69237825 | None:intergenic | 25.0% |
| !!! | TTATTTTTAGGATAGCTGTA+CGG | + | chr7_3:69237828-69237847 | Msa1120030:intron | 25.0% |
| ! | GTTTGTATGTGATAAATATG+GGG | + | chr7_3:69238247-69238266 | Msa1120030:intron | 25.0% |
| ! | CCAAATTAATATCACCTTTA+AGG | - | chr7_3:69238502-69238521 | None:intergenic | 25.0% |
| ! | CCTTAAAGGTGATATTAATT+TGG | + | chr7_3:69238499-69238518 | Msa1120030:CDS | 25.0% |
| ! | AAACGACAACTAATAATGAA+TGG | - | chr7_3:69238934-69238953 | None:intergenic | 25.0% |
| !! | TTACATGTTTTACTTGTTCT+AGG | + | chr7_3:69238952-69238971 | Msa1120030:intron | 25.0% |
| ! | GTTACAAACTTATGTTTACT+TGG | - | chr7_3:69238991-69239010 | None:intergenic | 25.0% |
| ! | TATCTTCAGTAATTACTCAA+GGG | + | chr7_3:69239086-69239105 | Msa1120030:intron | 25.0% |
| ! | GTAAAGAATTGCAAGAATTA+AGG | + | chr7_3:69239188-69239207 | Msa1120030:CDS | 25.0% |
| ! | ACCTAAATCGGATAAAATTT+GGG | - | chr7_3:69239363-69239382 | None:intergenic | 25.0% |
| ! | AACCTAAATCGGATAAAATT+TGG | - | chr7_3:69239364-69239383 | None:intergenic | 25.0% |
| ! | AACATATTAATGAAGTGAAG+TGG | - | chr7_3:69240079-69240098 | None:intergenic | 25.0% |
| !!! | ATACCCTTTTGAAATTGAAG+TGG | - | chr7_3:69237077-69237096 | None:intergenic | 30.0% |
| AAACAAAGATAGAAAACACG+TGG | - | chr7_3:69237129-69237148 | None:intergenic | 30.0% | |
| TCCACAAAAGTTGTGAAATT+TGG | + | chr7_3:69237174-69237193 | Msa1120030:intron | 30.0% | |
| ! | TCCAAATTTCACAACTTTTG+TGG | - | chr7_3:69237178-69237197 | None:intergenic | 30.0% |
| !! | AGAACATGTTTTTGACTATG+TGG | + | chr7_3:69237253-69237272 | Msa1120030:CDS | 30.0% |
| ! | ACAAGACAAAGAGTTTTCAT+AGG | + | chr7_3:69237341-69237360 | Msa1120030:CDS | 30.0% |
| TATCATTTCTAACCTGCAAT+TGG | - | chr7_3:69237672-69237691 | None:intergenic | 30.0% | |
| !! | TGTTTTTACCATATGGTGTT+TGG | + | chr7_3:69237774-69237793 | Msa1120030:intron | 30.0% |
| !!! | TCCGTACAATTTTGATTTGA+TGG | + | chr7_3:69237802-69237821 | Msa1120030:intron | 30.0% |
| ! | GTGTACTTTTATTCTCTAAC+TGG | - | chr7_3:69237962-69237981 | None:intergenic | 30.0% |
| !!! | TACCCTATGTTTAGTTTTGT+AGG | + | chr7_3:69238023-69238042 | Msa1120030:intron | 30.0% |
| TGCCTACAAAACTAAACATA+GGG | - | chr7_3:69238028-69238047 | None:intergenic | 30.0% | |
| ATGCCTACAAAACTAAACAT+AGG | - | chr7_3:69238029-69238048 | None:intergenic | 30.0% | |
| TTGCTTGTATTACATTTCAG+AGG | + | chr7_3:69238118-69238137 | Msa1120030:intron | 30.0% | |
| TGCTTGTATTACATTTCAGA+GGG | + | chr7_3:69238119-69238138 | Msa1120030:intron | 30.0% | |
| !! | TTATGACTTGCAGTTTTAGT+TGG | + | chr7_3:69238198-69238217 | Msa1120030:intron | 30.0% |
| ATACAAACAAGATAATCCCT+AGG | - | chr7_3:69238235-69238254 | None:intergenic | 30.0% | |
| ! | TTGTGCTTTTGTTGAAATGT+AGG | + | chr7_3:69238366-69238385 | Msa1120030:intron | 30.0% |
| AATGAAGTTGAAGATCACAA+AGG | + | chr7_3:69238416-69238435 | Msa1120030:CDS | 30.0% | |
| TGTTTAACCTAAGACTCTTA+AGG | - | chr7_3:69238559-69238578 | None:intergenic | 30.0% | |
| !! | TATTGACTTGCACTTAAGAA+TGG | - | chr7_3:69238702-69238721 | None:intergenic | 30.0% |
| CTATCTTCAGTAATTACTCA+AGG | + | chr7_3:69239085-69239104 | Msa1120030:intron | 30.0% | |
| ! | GATAAAATTTGGGCAGTTTT+TGG | - | chr7_3:69239353-69239372 | None:intergenic | 30.0% |
| CAAGGATACATAACCTAAAT+CGG | - | chr7_3:69239375-69239394 | None:intergenic | 30.0% | |
| ! | AAGCTGTTTGTACTTTGTTT+AGG | + | chr7_3:69239954-69239973 | Msa1120030:three_prime_UTR | 30.0% |
| AGTACAAACCACTAAATATC+CGG | - | chr7_3:69240008-69240027 | None:intergenic | 30.0% | |
| CTCTGTGTTTGTTTAGATCT+TGG | + | chr7_3:69237097-69237116 | Msa1120030:intron | 35.0% | |
| TGACAGAAACTCTTTGTCTT+TGG | + | chr7_3:69237286-69237305 | Msa1120030:CDS | 35.0% | |
| TGTCTTTGGTATGCAAAAGT+TGG | + | chr7_3:69237300-69237319 | Msa1120030:CDS | 35.0% | |
| !!! | GATTTTAGTTTGGTTCCTCA+TGG | + | chr7_3:69237452-69237471 | Msa1120030:CDS | 35.0% |
| ! | TGAAGCACTTGCTAAGAATA+AGG | + | chr7_3:69237502-69237521 | Msa1120030:CDS | 35.0% |
| ! | TGCTAAGAATAAGGTTGGTT+TGG | + | chr7_3:69237511-69237530 | Msa1120030:CDS | 35.0% |
| !! | TAAGAATAAGGTTGGTTTGG+AGG | + | chr7_3:69237514-69237533 | Msa1120030:CDS | 35.0% |
| ! | TTAGTTCTTGTTAGCTGTGA+AGG | + | chr7_3:69237614-69237633 | Msa1120030:CDS | 35.0% |
| TAGTTCTTGTTAGCTGTGAA+GGG | + | chr7_3:69237615-69237634 | Msa1120030:CDS | 35.0% | |
| GGATAAATCCAAACACCATA+TGG | - | chr7_3:69237785-69237804 | None:intergenic | 35.0% | |
| GTACACTTAGTTCAGCAAAA+TGG | + | chr7_3:69237976-69237995 | Msa1120030:intron | 35.0% | |
| ACTTAGTTCAGCAAAATGGT+TGG | + | chr7_3:69237980-69237999 | Msa1120030:intron | 35.0% | |
| AGTTGGAAAAATGTGTTCCT+AGG | + | chr7_3:69238215-69238234 | Msa1120030:intron | 35.0% | |
| GTTGGAAAAATGTGTTCCTA+GGG | + | chr7_3:69238216-69238235 | Msa1120030:intron | 35.0% | |
| TATGTGATAAATATGGGGTC+AGG | + | chr7_3:69238252-69238271 | Msa1120030:intron | 35.0% | |
| ATGTGATAAATATGGGGTCA+GGG | + | chr7_3:69238253-69238272 | Msa1120030:intron | 35.0% | |
| TGTTGAAATGTAGGTCTCTT+AGG | + | chr7_3:69238375-69238394 | Msa1120030:intron | 35.0% | |
| GTTGAAATGTAGGTCTCTTA+GGG | + | chr7_3:69238376-69238395 | Msa1120030:intron | 35.0% | |
| CTTAATTTCGCTTGCCTTAA+AGG | + | chr7_3:69238485-69238504 | Msa1120030:CDS | 35.0% | |
| AACCTAAGACTCTTAAGGTT+AGG | - | chr7_3:69238554-69238573 | None:intergenic | 35.0% | |
| ATTCCCAAATCCATTAGTTG+AGG | - | chr7_3:69238626-69238645 | None:intergenic | 35.0% | |
| !! | CAACTAATGGATTTGGGAAT+TGG | + | chr7_3:69238626-69238645 | Msa1120030:CDS | 35.0% |
| AGATGCCTATGCTAAGTTTA+AGG | + | chr7_3:69238673-69238692 | Msa1120030:CDS | 35.0% | |
| AAGTCAATAACCAGTTTGTC+AGG | + | chr7_3:69238713-69238732 | Msa1120030:CDS | 35.0% | |
| AGTCAATAACCAGTTTGTCA+GGG | + | chr7_3:69238714-69238733 | Msa1120030:CDS | 35.0% | |
| AAATTGGATAGATAGCTGCA+AGG | - | chr7_3:69238763-69238782 | None:intergenic | 35.0% | |
| ! | GATGTTAAGTTCTGGCAAAT+TGG | - | chr7_3:69238779-69238798 | None:intergenic | 35.0% |
| AGTTCAAGGATGTTAAGTTC+TGG | - | chr7_3:69238787-69238806 | None:intergenic | 35.0% | |
| ATAAAACTTATTCGCCACTG+TGG | + | chr7_3:69238842-69238861 | Msa1120030:CDS | 35.0% | |
| TAAAACTTATTCGCCACTGT+GGG | + | chr7_3:69238843-69238862 | Msa1120030:CDS | 35.0% | |
| TGGATGCTGTAACAAGTAAA+TGG | - | chr7_3:69238914-69238933 | None:intergenic | 35.0% | |
| ACTGAAGATAGAGCAATAAG+TGG | - | chr7_3:69239076-69239095 | None:intergenic | 35.0% | |
| ! | TATCGCTACAAGTCCTTTTT+CGG | - | chr7_3:69239254-69239273 | None:intergenic | 35.0% |
| TAGAGTAATGAGTGAAGCTT+AGG | - | chr7_3:69239289-69239308 | None:intergenic | 35.0% | |
| ! | GCCCAAATTTTATCCGATTT+AGG | + | chr7_3:69239359-69239378 | Msa1120030:CDS | 35.0% |
| ATGTTGTCTATTGCATTTGC+TGG | + | chr7_3:69239550-69239569 | Msa1120030:CDS | 35.0% | |
| GGAATGCTCTATGTATTGAA+CGG | + | chr7_3:69239586-69239605 | Msa1120030:CDS | 35.0% | |
| AAAATCTCCACATTCAACCT+CGG | - | chr7_3:69239766-69239785 | None:intergenic | 35.0% | |
| ! | GATTTTCAGTGAAAGTGAAC+AGG | + | chr7_3:69239780-69239799 | Msa1120030:CDS | 35.0% |
| GATGTATTTGTATCGTACAG+TGG | + | chr7_3:69239840-69239859 | Msa1120030:CDS | 35.0% | |
| !! | TAATGCAATTTTAGTCCCTC+CGG | + | chr7_3:69239986-69240005 | Msa1120030:three_prime_UTR | 35.0% |
| CATGAATTATTTCCCTGACG+AGG | + | chr7_3:69237226-69237245 | Msa1120030:exon | 40.0% | |
| CATGTTCTATTACCTCGTCA+GGG | - | chr7_3:69237241-69237260 | None:intergenic | 40.0% | |
| ACATGTTCTATTACCTCGTC+AGG | - | chr7_3:69237242-69237261 | None:intergenic | 40.0% | |
| GTTACTCTATTAGTCCTGAG+AGG | + | chr7_3:69237369-69237388 | Msa1120030:CDS | 40.0% | |
| ! | TTAGTTTGGTTCCTCATGGT+TGG | + | chr7_3:69237456-69237475 | Msa1120030:CDS | 40.0% |
| ! | TAGTTTGGTTCCTCATGGTT+GGG | + | chr7_3:69237457-69237476 | Msa1120030:CDS | 40.0% |
| TTAGCAAGTGCTTCAATCCA+TGG | - | chr7_3:69237497-69237516 | None:intergenic | 40.0% | |
| ! | GCACTTGCTAAGAATAAGGT+TGG | + | chr7_3:69237506-69237525 | Msa1120030:CDS | 40.0% |
| AAGAACGAGAAAGTAGCTCA+AGG | - | chr7_3:69237577-69237596 | None:intergenic | 40.0% | |
| GCAAAATGGTTGGATGACTT+TGG | + | chr7_3:69237990-69238009 | Msa1120030:intron | 40.0% | |
| TCTTGACATCCCATATCGTA+TGG | + | chr7_3:69238342-69238361 | Msa1120030:intron | 40.0% | |
| AAGCACAAGCCATACGATAT+GGG | - | chr7_3:69238354-69238373 | None:intergenic | 40.0% | |
| AAAGCACAAGCCATACGATA+TGG | - | chr7_3:69238355-69238374 | None:intergenic | 40.0% | |
| CTTCAACTTCATTCTCTTGC+AGG | - | chr7_3:69238409-69238428 | None:intergenic | 40.0% | |
| TTGAAGATCACAAAGGACAG+TGG | + | chr7_3:69238423-69238442 | Msa1120030:CDS | 40.0% | |
| CTCCTAACCTTAAGAGTCTT+AGG | + | chr7_3:69238549-69238568 | Msa1120030:CDS | 40.0% | |
| !! | AGCACCTCAACTAATGGATT+TGG | + | chr7_3:69238619-69238638 | Msa1120030:CDS | 40.0% |
| !! | GCACCTCAACTAATGGATTT+GGG | + | chr7_3:69238620-69238639 | Msa1120030:CDS | 40.0% |
| AGGCATCTGAATTGAGATCA+TGG | - | chr7_3:69238661-69238680 | None:intergenic | 40.0% | |
| ! | TGACTTGCACTTAAGAATGG+TGG | - | chr7_3:69238699-69238718 | None:intergenic | 40.0% |
| ! | AACCAGTTTGTCAGGGTTTT+TGG | + | chr7_3:69238721-69238740 | Msa1120030:CDS | 40.0% |
| TTCCAAAAACCCTGACAAAC+TGG | - | chr7_3:69238726-69238745 | None:intergenic | 40.0% | |
| !! | TTTGTCAGGGTTTTTGGAAG+TGG | + | chr7_3:69238727-69238746 | Msa1120030:CDS | 40.0% |
| TAGATAGCTGCAAGGCTAAA+AGG | - | chr7_3:69238755-69238774 | None:intergenic | 40.0% | |
| !! | TTGCAGATAATGGATCGCAT+TGG | + | chr7_3:69239133-69239152 | Msa1120030:intron | 40.0% |
| AGGACTTGTAGCGATATCAA+TGG | + | chr7_3:69239258-69239277 | Msa1120030:CDS | 40.0% | |
| GGACTTGTAGCGATATCAAT+GGG | + | chr7_3:69239259-69239278 | Msa1120030:CDS | 40.0% | |
| ! | AGCCACTAGATGAAGGTTTT+GGG | + | chr7_3:69239425-69239444 | Msa1120030:CDS | 40.0% |
| GATGTAAAGGAAAACCTGGT+CGG | - | chr7_3:69239506-69239525 | None:intergenic | 40.0% | |
| ! | GACCAGGTTTTCCTTTACAT+CGG | + | chr7_3:69239505-69239524 | Msa1120030:CDS | 40.0% |
| TTCCGATGTAAAGGAAAACC+TGG | - | chr7_3:69239510-69239529 | None:intergenic | 40.0% | |
| GAGATTAGAGACTGTCCATT+CGG | + | chr7_3:69239631-69239650 | Msa1120030:CDS | 40.0% | |
| ATGAAACAATGCGATCCCTT+TGG | + | chr7_3:69239686-69239705 | Msa1120030:CDS | 40.0% | |
| TGTAGAAGCTTGCAAGACAT+TGG | + | chr7_3:69239729-69239748 | Msa1120030:CDS | 40.0% | |
| TGAACAGGCAGATTGTTATG+TGG | + | chr7_3:69239795-69239814 | Msa1120030:CDS | 40.0% | |
| GCAGATTGTTATGTGGAAGA+TGG | + | chr7_3:69239802-69239821 | Msa1120030:CDS | 40.0% | |
| TATTTGTATCGTACAGTGGC+TGG | + | chr7_3:69239844-69239863 | Msa1120030:CDS | 40.0% | |
| ATTTGTATCGTACAGTGGCT+GGG | + | chr7_3:69239845-69239864 | Msa1120030:CDS | 40.0% | |
| TACAGAGTCCATACATAGTC+TGG | - | chr7_3:69239886-69239905 | None:intergenic | 40.0% | |
| AGACTATGTATGGACTCTGT+AGG | + | chr7_3:69239885-69239904 | Msa1120030:CDS | 40.0% | |
| CAAACCACTAAATATCCGGA+GGG | - | chr7_3:69240004-69240023 | None:intergenic | 40.0% | |
| ACAAACCACTAAATATCCGG+AGG | - | chr7_3:69240005-69240024 | None:intergenic | 40.0% | |
| CTCTATTAGTCCTGAGAGGT+TGG | + | chr7_3:69237373-69237392 | Msa1120030:CDS | 45.0% | |
| TATTAGTCCTGAGAGGTTGG+TGG | + | chr7_3:69237376-69237395 | Msa1120030:CDS | 45.0% | |
| ! | AGTTTGGTTCCTCATGGTTG+GGG | + | chr7_3:69237458-69237477 | Msa1120030:CDS | 45.0% |
| !!! | GGGGTGGTTTTGTTTATCCA+TGG | + | chr7_3:69237477-69237496 | Msa1120030:CDS | 45.0% |
| !! | AGGTTGGTTTGGAGGAACTT+AGG | + | chr7_3:69237522-69237541 | Msa1120030:CDS | 45.0% |
| !! | TGGAGGAACTTAGGTTGAAG+AGG | + | chr7_3:69237531-69237550 | Msa1120030:CDS | 45.0% |
| !! | GGAACTTAGGTTGAAGAGGA+TGG | + | chr7_3:69237535-69237554 | Msa1120030:CDS | 45.0% |
| AATGCGAGCACCTCAACTAA+TGG | + | chr7_3:69238613-69238632 | Msa1120030:CDS | 45.0% | |
| ! | GGTGGCCTTAAACTTAGCAT+AGG | - | chr7_3:69238681-69238700 | None:intergenic | 45.0% |
| TGCTGCATAGCTCAAGTTCA+AGG | - | chr7_3:69238801-69238820 | None:intergenic | 45.0% | |
| TTGAACTTGAGCTATGCAGC+AGG | + | chr7_3:69238800-69238819 | Msa1120030:CDS | 45.0% | |
| ! | AGCTATGCAGCAGGCATTTT+GGG | + | chr7_3:69238809-69238828 | Msa1120030:CDS | 45.0% |
| TGGGAAACTACAGCGCTTAT+GGG | + | chr7_3:69238862-69238881 | Msa1120030:CDS | 45.0% | |
| AATGGATCGCATTGGAGACT+TGG | + | chr7_3:69239141-69239160 | Msa1120030:CDS | 45.0% | |
| ATGGATCGCATTGGAGACTT+GGG | + | chr7_3:69239142-69239161 | Msa1120030:CDS | 45.0% | |
| ! | GTTTTCCCATCAGCTCCATT+TGG | + | chr7_3:69239211-69239230 | Msa1120030:CDS | 45.0% |
| GGTTTCCAAATGGAGCTGAT+GGG | - | chr7_3:69239219-69239238 | None:intergenic | 45.0% | |
| TGGTTTCCAAATGGAGCTGA+TGG | - | chr7_3:69239220-69239239 | None:intergenic | 45.0% | |
| AGCTCCATTTGGAAACCAAG+CGG | + | chr7_3:69239222-69239241 | Msa1120030:CDS | 45.0% | |
| CACTGTTATGAGAGCAGCAT+TGG | - | chr7_3:69239329-69239348 | None:intergenic | 45.0% | |
| CAATGCTGCTCTCATAACAG+TGG | + | chr7_3:69239327-69239346 | Msa1120030:CDS | 45.0% | |
| !!! | GGTCAGGTTTTGTTGCATCA+AGG | - | chr7_3:69239393-69239412 | None:intergenic | 45.0% |
| ACAATGCAGCCACTAGATGA+AGG | + | chr7_3:69239418-69239437 | Msa1120030:CDS | 45.0% | |
| ! | CAGCCACTAGATGAAGGTTT+TGG | + | chr7_3:69239424-69239443 | Msa1120030:CDS | 45.0% |
| ! | GCCACTAGATGAAGGTTTTG+GGG | + | chr7_3:69239426-69239445 | Msa1120030:CDS | 45.0% |
| CAGCGTACATTCCGATGTAA+AGG | - | chr7_3:69239519-69239538 | None:intergenic | 45.0% | |
| ! | ATTTGCTGGTGAGAGTGACA+AGG | + | chr7_3:69239564-69239583 | Msa1120030:CDS | 45.0% |
| TTTGCTGGTGAGAGTGACAA+GGG | + | chr7_3:69239565-69239584 | Msa1120030:CDS | 45.0% | |
| AGGATGCACCAGACTATGTA+TGG | + | chr7_3:69239875-69239894 | Msa1120030:CDS | 45.0% | |
| ! | GGACTCTGTAGGTGCATTTT+AGG | + | chr7_3:69239896-69239915 | Msa1120030:exon | 45.0% |
| TAGTCCCTCCGGATATTTAG+TGG | + | chr7_3:69239997-69240016 | Msa1120030:three_prime_UTR | 45.0% | |
| ACAAAACCACCCCAACCATG+AGG | - | chr7_3:69237470-69237489 | None:intergenic | 50.0% | |
| TGTGAAGGGTTCACCACTGA+TGG | + | chr7_3:69237629-69237648 | Msa1120030:CDS | 50.0% | |
| AATTGGCAGCAACAGCAGCA+AGG | - | chr7_3:69237655-69237674 | None:intergenic | 50.0% | |
| ACAAGTGATGTGCAGCTCTC+TGG | - | chr7_3:69238461-69238480 | None:intergenic | 50.0% | |
| ! | ATCCTTTGCAGTGCATCGAC+AGG | - | chr7_3:69238590-69238609 | None:intergenic | 50.0% |
| ! | GAGCTATGCAGCAGGCATTT+TGG | + | chr7_3:69238808-69238827 | Msa1120030:CDS | 50.0% |
| GTGGGAAACTACAGCGCTTA+TGG | + | chr7_3:69238861-69238880 | Msa1120030:CDS | 50.0% | |
| ACAGCCGCTTGGTTTCCAAA+TGG | - | chr7_3:69239229-69239248 | None:intergenic | 50.0% | |
| !!! | CTTTTTCGGTAACAGCCGCT+TGG | - | chr7_3:69239240-69239259 | None:intergenic | 50.0% |
| CAAGCGGCTGTTACCGAAAA+AGG | + | chr7_3:69239238-69239257 | Msa1120030:CDS | 50.0% | |
| !! | TGAGAGCAGCATTGGTCATC+TGG | - | chr7_3:69239321-69239340 | None:intergenic | 50.0% |
| CTAGTGGCTGCATTGTGTCA+GGG | - | chr7_3:69239414-69239433 | None:intergenic | 50.0% | |
| TCTAGTGGCTGCATTGTGTC+AGG | - | chr7_3:69239415-69239434 | None:intergenic | 50.0% | |
| GCCCCAAAACCTTCATCTAG+TGG | - | chr7_3:69239430-69239449 | None:intergenic | 50.0% | |
| AGACTGTCCATTCGGAGACA+CGG | + | chr7_3:69239639-69239658 | Msa1120030:CDS | 50.0% | |
| ACGGCGCTTCTAACAGACAT+AGG | + | chr7_3:69239658-69239677 | Msa1120030:CDS | 50.0% | |
| CGGCGCTTCTAACAGACATA+GGG | + | chr7_3:69239659-69239678 | Msa1120030:CDS | 50.0% | |
| ! | CATTGGCTAAGAAGATGCCG+AGG | + | chr7_3:69239746-69239765 | Msa1120030:CDS | 50.0% |
| GAAGATGCCGAGGTTGAATG+TGG | + | chr7_3:69239756-69239775 | Msa1120030:CDS | 50.0% | |
| ATCGTACAGTGGCTGGGAAA+AGG | + | chr7_3:69239851-69239870 | Msa1120030:CDS | 50.0% | |
| TCGTACAGTGGCTGGGAAAA+GGG | + | chr7_3:69239852-69239871 | Msa1120030:CDS | 50.0% | |
| AACCTCTCCACCAACCTCTC+AGG | - | chr7_3:69237386-69237405 | None:intergenic | 55.0% | |
| TTGGTTCCTCATGGTTGGGG+TGG | + | chr7_3:69237461-69237480 | Msa1120030:CDS | 55.0% | |
| AACAGCAGCAAGGCCATCAG+TGG | - | chr7_3:69237645-69237664 | None:intergenic | 55.0% | |
| CTGCTGTTGCTGCCAATTGC+AGG | + | chr7_3:69237657-69237676 | Msa1120030:CDS | 55.0% | |
| !! | GGGAGCACTTGAGAGACTTG+TGG | + | chr7_3:69238520-69238539 | Msa1120030:CDS | 55.0% |
| TGCCTGTCGATGCACTGCAA+AGG | + | chr7_3:69238585-69238604 | Msa1120030:CDS | 55.0% | |
| AGCGCTGTAGTTTCCCACAG+TGG | - | chr7_3:69238859-69238878 | None:intergenic | 55.0% | |
| CGCATTGGAGACTTGGGACT+AGG | + | chr7_3:69239148-69239167 | Msa1120030:CDS | 55.0% | |
| TGCAGTCATGCAAGCGACTG+AGG | + | chr7_3:69239455-69239474 | Msa1120030:CDS | 55.0% | |
| AGTCATGCAAGCGACTGAGG+CGG | + | chr7_3:69239458-69239477 | Msa1120030:CDS | 55.0% | |
| CTCGCACGACGACATCCAAA+GGG | - | chr7_3:69239704-69239723 | None:intergenic | 55.0% | |
| TACAGTGGCTGGGAAAAGGG+AGG | + | chr7_3:69239855-69239874 | Msa1120030:CDS | 55.0% | |
| !! | GTCCTGAGAGGTTGGTGGAG+AGG | + | chr7_3:69237381-69237400 | Msa1120030:CDS | 60.0% |
| GGCTGCATTGTGTCAGGGTC+AGG | - | chr7_3:69239409-69239428 | None:intergenic | 60.0% | |
| ACTGAGGCGGCTATCGCTCT+CGG | + | chr7_3:69239471-69239490 | Msa1120030:CDS | 60.0% | |
| !! | AGAAGCGCCGTGTCTCCGAA+TGG | - | chr7_3:69239649-69239668 | None:intergenic | 60.0% |
| CCTCGCACGACGACATCCAA+AGG | - | chr7_3:69239705-69239724 | None:intergenic | 60.0% | |
| CCTTTGGATGTCGTCGTGCG+AGG | + | chr7_3:69239702-69239721 | Msa1120030:CDS | 60.0% | |
| CTGAGGCGGCTATCGCTCTC+GGG | + | chr7_3:69239472-69239491 | Msa1120030:CDS | 65.0% | |
| CTCGGGTCAGTTGACCGACC+AGG | + | chr7_3:69239489-69239508 | Msa1120030:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 69237026 | 69240147 | 69237026 | ID=Msa1120030;Name=Msa1120030 |
| chr7_3 | mRNA | 69237026 | 69240147 | 69237026 | ID=Msa1120030-mRNA-1;Parent=Msa1120030;Name=Msa1120030-mRNA-1;_AED=0.15;_eAED=0.15;_QI=118|1|0.75|1|0.66|0.5|4|241|571 |
| chr7_3 | exon | 69237026 | 69237100 | 69237026 | ID=Msa1120030-mRNA-1:exon:17513;Parent=Msa1120030-mRNA-1 |
| chr7_3 | exon | 69237184 | 69237678 | 69237184 | ID=Msa1120030-mRNA-1:exon:17514;Parent=Msa1120030-mRNA-1 |
| chr7_3 | exon | 69238388 | 69238883 | 69238388 | ID=Msa1120030-mRNA-1:exon:17515;Parent=Msa1120030-mRNA-1 |
| chr7_3 | exon | 69239139 | 69240147 | 69239139 | ID=Msa1120030-mRNA-1:exon:17516;Parent=Msa1120030-mRNA-1 |
| chr7_3 | five_prime_UTR | 69237026 | 69237100 | 69237026 | ID=Msa1120030-mRNA-1:five_prime_utr;Parent=Msa1120030-mRNA-1 |
| chr7_3 | five_prime_UTR | 69237184 | 69237226 | 69237184 | ID=Msa1120030-mRNA-1:five_prime_utr;Parent=Msa1120030-mRNA-1 |
| chr7_3 | CDS | 69237227 | 69237678 | 69237227 | ID=Msa1120030-mRNA-1:cds;Parent=Msa1120030-mRNA-1 |
| chr7_3 | CDS | 69238388 | 69238883 | 69238388 | ID=Msa1120030-mRNA-1:cds;Parent=Msa1120030-mRNA-1 |
| chr7_3 | CDS | 69239139 | 69239906 | 69239139 | ID=Msa1120030-mRNA-1:cds;Parent=Msa1120030-mRNA-1 |
| chr7_3 | three_prime_UTR | 69239907 | 69240147 | 69239907 | ID=Msa1120030-mRNA-1:three_prime_utr;Parent=Msa1120030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
