AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0171760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0171760 MtrunA17_Chr8g0386901 82.313 147 25 1 63 208 14 160 2.54e-76 246
Msa0171760 MtrunA17_Chr8g0353271 65.327 199 49 3 121 307 149 339 1.40e-70 222
Msa0171760 MtrunA17_Chr8g0390981 42.857 105 55 1 71 170 46 150 4.19e-19 87.8
Msa0171760 MtrunA17_Chr4g0004131 94.286 35 2 0 33 67 37 71 3.00e-15 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0171760 AT1G63640.2 51.695 118 53 3 71 186 45 160 3.09e-29 118
Msa0171760 AT1G63640.3 51.695 118 53 3 71 186 45 160 3.34e-29 118
Msa0171760 AT1G63640.1 51.695 118 53 3 71 186 45 160 3.47e-29 118
Msa0171760 AT1G63640.4 51.695 118 53 3 71 186 45 160 3.47e-29 118
Msa0171760 AT1G63640.5 51.695 118 53 3 71 186 35 150 3.59e-29 117
Msa0171760 AT1G08315.1 51.042 96 43 1 187 278 207 302 1.58e-18 84.7
Msa0171760 AT5G41310.1 42.017 119 51 4 71 187 46 148 3.54e-18 85.5

Find 181 sgRNAs with CRISPR-Local

Find 445 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCGTATTATGTACCATTT+TGG 0.145495 1_4:+56488309 Msa0171760:CDS
TTCTGTAGGGTGTGGTTTAT+TGG 0.198389 1_4:+56487654 Msa0171760:intron
TTATTTGTTTAACTTCTTCT+TGG 0.238914 1_4:-56493447 None:intergenic
TTTGGTGGCCTTGGATGAAC+TGG 0.249596 1_4:+56488583 Msa0171760:CDS
GAGGCGTTTAAGAATGTTTC+TGG 0.264257 1_4:+56489864 Msa0171760:CDS
TTCTTCCTCAGAAATTTCTA+AGG 0.279408 1_4:-56488263 None:intergenic
AAATTTCTGAGGAAGAATTA+AGG 0.283238 1_4:+56488269 Msa0171760:CDS
TCCTTGTCCAATGCTTGCTT+TGG 0.284828 1_4:-56487683 None:intergenic
GGGCTGGTCCCACCTCTTCC+TGG 0.301151 1_4:-56489406 None:intergenic
TTGAATGGTGGTTCGTCGTT+TGG 0.303435 1_4:+56490202 Msa0171760:exon
CCGTATAAAGATATCCTATA+TGG 0.308033 1_4:+56493380 Msa0171760:three_prime_UTR
GCTGCAGTTGCTAAGATATC+TGG 0.323835 1_4:+56492320 Msa0171760:three_prime_UTR
TCTAAGGGCATATTAAAGTT+AGG 0.338119 1_4:-56488247 None:intergenic
ATTGCTGATGTTAAAGATAA+AGG 0.343931 1_4:+56490044 Msa0171760:CDS
TTGTCCAATGCTTGCTTTGG+AGG 0.347732 1_4:-56487680 None:intergenic
TTGAATAGTGGTTCGTCGTT+CGG 0.348591 1_4:+56490146 Msa0171760:CDS
GCATCTCTGATATAGGTTGC+TGG 0.350294 1_4:+56489825 Msa0171760:intron
AGGAACCAGTTTGTCCAAAA+TGG 0.352229 1_4:-56488323 None:intergenic
CCATATAGGATATCTTTATA+CGG 0.354474 1_4:-56493380 None:intergenic
CACCCCACAATCTCTTCCTT+TGG 0.355561 1_4:-56491379 None:intergenic
TATGACAGATTGACAGTGTT+AGG 0.365841 1_4:+56492110 Msa0171760:three_prime_UTR
AACTGTGATACAGGCCTTGC+TGG 0.367624 1_4:-56493072 None:intergenic
CTTGGATGAACTGGGATTAT+CGG 0.369631 1_4:+56488592 Msa0171760:CDS
CCTTGTGGAGAGGACTGTTT+TGG 0.369908 1_4:+56492416 Msa0171760:three_prime_UTR
GGTCGAGGGAGAGGAGAAGA+AGG 0.387824 1_4:+56486643 Msa0171760:five_prime_UTR
ACCTTTGGTGATGTCCTTCA+TGG 0.388723 1_4:+56493278 Msa0171760:three_prime_UTR
AAAATATCCGAGGTTGTTCC+AGG 0.389533 1_4:+56489388 Msa0171760:CDS
TCATGATCAAGTTAAGGCTT+TGG 0.390376 1_4:+56493038 Msa0171760:three_prime_UTR
AAAGATAAAGGAAGTGTTAA+GGG 0.391288 1_4:+56490056 Msa0171760:CDS
GGAGGAAAGTGACGGGAGAA+AGG 0.391659 1_4:+56486675 Msa0171760:five_prime_UTR
GACAGAGAGGGTCGAGGGAG+AGG 0.394862 1_4:+56486634 Msa0171760:five_prime_UTR
ATGTCTGTCAACTGTGATAC+AGG 0.396053 1_4:-56493081 None:intergenic
GAGCCTTCTATTAGTCGTTA+TGG 0.396409 1_4:+56487722 Msa0171760:CDS
TGGTGTAAGTGCGCCTCTGC+GGG 0.398303 1_4:+56492066 Msa0171760:three_prime_UTR
AATTTCTGAGGAAGAATTAA+GGG 0.400000 1_4:+56488270 Msa0171760:CDS
TTTAAGAATGTTTCTGGTGT+TGG 0.404185 1_4:+56489870 Msa0171760:CDS
CGCGTTGGCGTTTGGTGCCA+TGG 0.410736 1_4:+56490016 Msa0171760:CDS
GAAAAGGAGGAAGGAAAGAA+AGG 0.416423 1_4:+56486778 Msa0171760:five_prime_UTR
AAAGCAAAACAGAACAGAAC+GGG 0.417716 1_4:+56486612 Msa0171760:five_prime_UTR
ATGAAAGGTCTCTGGTACAT+TGG 0.419417 1_4:-56492964 None:intergenic
TGCCTTTCATGAAAGGTCTC+TGG 0.420757 1_4:-56492972 None:intergenic
TAAAGATAAAGGAAGTGTTA+AGG 0.422699 1_4:+56490055 Msa0171760:CDS
GTGCTCAGCAGTAATGAGTT+TGG 0.430118 1_4:+56493238 Msa0171760:three_prime_UTR
GTAAGAGACGCGTTGGCGTT+TGG 0.441043 1_4:+56490008 Msa0171760:CDS
CTCTGCGGGCTTGACAGTGT+TGG 0.444149 1_4:+56492080 Msa0171760:three_prime_UTR
TGAACGGAACAAGGGAAGAT+TGG 0.447685 1_4:+56486801 Msa0171760:five_prime_UTR
TCTGCGGGCTTGACAGTGTT+GGG 0.448567 1_4:+56492081 Msa0171760:three_prime_UTR
TTGCTACTGGTTCGAGTATG+AGG 0.451497 1_4:+56489916 Msa0171760:CDS
TGTTTCTGGTGTTGGAGTGC+TGG 0.453944 1_4:+56489878 Msa0171760:CDS
ACTGGAGAAAGGAAAAGAAA+AGG 0.455546 1_4:+56486762 Msa0171760:five_prime_UTR
TTGGATGAACTGGGATTATC+GGG 0.455960 1_4:+56488593 Msa0171760:CDS
GTCCAAAATGGTACATAATA+CGG 0.457118 1_4:-56488311 None:intergenic
AAGTGTTAAGGGGCAGAGTA+AGG 0.459646 1_4:+56490067 Msa0171760:CDS
TCTAACTCATGATCAAGTTA+AGG 0.463837 1_4:+56493032 Msa0171760:three_prime_UTR
TAAAGTTTGCCTTTCATGAA+AGG 0.465962 1_4:-56492979 None:intergenic
AAGAAGAGGAGGAAAGTGAC+GGG 0.466316 1_4:+56486668 Msa0171760:five_prime_UTR
AGGGAAGATTGGAGAGAAGC+TGG 0.467280 1_4:+56486812 Msa0171760:five_prime_UTR
TTACCATAACGACTAATAGA+AGG 0.467287 1_4:-56487725 None:intergenic
AAAGGAAAAGAAAAGGAGGA+AGG 0.472311 1_4:+56486769 Msa0171760:five_prime_UTR
CAAACTGGTTCCTGGTTCGC+TGG 0.475497 1_4:+56488333 Msa0171760:CDS
GAGGTATATTGCAATGGTGT+TGG 0.476312 1_4:+56492354 Msa0171760:three_prime_UTR
CGCTTACACCTCTGATAACA+TGG 0.478669 1_4:+56488209 Msa0171760:CDS
TAGGTGACGTCGCAACGGAT+TGG 0.483349 1_4:+56492129 Msa0171760:three_prime_UTR
AAAGAAGAGGAGGAAAGTGA+CGG 0.486872 1_4:+56486667 Msa0171760:five_prime_UTR
ATCCGAGAGCATGCTTGAAT+AGG 0.487577 1_4:+56492378 Msa0171760:three_prime_UTR
GAACGGGACAGAGAGGGTCG+AGG 0.492278 1_4:+56486628 Msa0171760:five_prime_UTR
TCCGAGGTTGTTCCAGGAAG+AGG 0.495714 1_4:+56489394 Msa0171760:CDS
ATGTGCTGTGGTAGAACCTT+TGG 0.500206 1_4:+56493263 Msa0171760:three_prime_UTR
TTGGCGTTTGGTGCCATGGA+TGG 0.501029 1_4:+56490020 Msa0171760:CDS
GTGGTGTAAGTGCGCCTCTG+CGG 0.501056 1_4:+56492065 Msa0171760:three_prime_UTR
GAAAGACCCGTGCGGTAGCA+CGG 0.501371 1_4:-56493425 None:intergenic
TTCTCAAGGCACTGCAACAC+AGG 0.501954 1_4:-56489330 None:intergenic
GGGATTTGAATTGTCAGAGC+TGG 0.502158 1_4:+56488613 Msa0171760:CDS
AGTGATTGATTTGTCTGCCA+TGG 0.502442 1_4:+56492512 Msa0171760:three_prime_UTR
TGATCATGAGTTAGAGACTC+AGG 0.503504 1_4:-56493024 None:intergenic
CTTTGTTGGGCTAAACATAG+TGG 0.503747 1_4:+56493312 Msa0171760:three_prime_UTR
CCTACTACCTCCAGCGAACC+AGG 0.505351 1_4:-56488343 None:intergenic
CCATCCAAAGGAAGAGATTG+TGG 0.506622 1_4:+56491375 Msa0171760:three_prime_UTR
CTGGTTCGAGTATGAGGACG+AGG 0.510558 1_4:+56489922 Msa0171760:CDS
TGTGGTGGAGATGTGGTGGC+TGG 0.510838 1_4:+56489981 Msa0171760:CDS
GTTGGTGATGTTCGTAATCA+TGG 0.513228 1_4:+56490113 Msa0171760:CDS
CCACAATCTCTTCCTTTGGA+TGG 0.514363 1_4:-56491375 None:intergenic
CTCCTATTCAAGCATGCTCT+CGG 0.516737 1_4:-56492380 None:intergenic
AAAGAAAGGTGAACGGAACA+AGG 0.516996 1_4:+56486792 Msa0171760:five_prime_UTR
AGAAAGGAAAAGAAAATTGA+GGG 0.518961 1_4:+56486691 Msa0171760:five_prime_UTR
TACAAGGCAATCAATGATGA+AGG 0.521364 1_4:+56492937 Msa0171760:three_prime_UTR
TCTTCCTCAGAAATTTCTAA+GGG 0.522851 1_4:-56488262 None:intergenic
AGGAGAAGAAGGAAAAGAAG+AGG 0.523376 1_4:+56486654 Msa0171760:five_prime_UTR
AAGAATTAAGGGCATGCTTG+AGG 0.524021 1_4:+56488281 Msa0171760:CDS
AGAAGAAGGAAAAGAAGAGG+AGG 0.524302 1_4:+56486657 Msa0171760:five_prime_UTR
CGAGAGCATGCTTGAATAGG+AGG 0.526363 1_4:+56492381 Msa0171760:three_prime_UTR
AGAATTAAGGGCATGCTTGA+GGG 0.526898 1_4:+56488282 Msa0171760:CDS
AAAGACCCGTGCGGTAGCAC+GGG 0.529287 1_4:-56493424 None:intergenic
AGTCGTTATGGTAATGATGA+AGG 0.534093 1_4:+56487734 Msa0171760:CDS
GGTTATTGCAGATTCTTACA+AGG 0.535096 1_4:+56492921 Msa0171760:intron
TGAATTGTCAGAGCTGGAGC+AGG 0.536848 1_4:+56488619 Msa0171760:CDS
GGAGAAAGGAAAAGAAAAGG+AGG 0.538001 1_4:+56486765 Msa0171760:five_prime_UTR
CAACAAAAGTGACTGGAGAA+AGG 0.539239 1_4:+56486751 Msa0171760:five_prime_UTR
AACGGGACAGAGAGGGTCGA+GGG 0.541857 1_4:+56486629 Msa0171760:five_prime_UTR
AACATCAGCAATTCCATCCA+TGG 0.543264 1_4:-56490033 None:intergenic
CATTTAGGGAGACCTTTGCT+CGG 0.544280 1_4:-56491964 None:intergenic
TGGAGACAATTCTGCCAGCA+AGG 0.545344 1_4:+56493058 Msa0171760:three_prime_UTR
TGTCGGTAGAATTACGACTT+TGG 0.548516 1_4:-56491919 None:intergenic
TTGCTTAATGTTGTGAGATG+TGG 0.551029 1_4:+56489963 Msa0171760:CDS
GCAACCTCCAAAGCAAGCAT+TGG 0.553495 1_4:+56487676 Msa0171760:CDS
GACGAGGGAAAATGCAGTGT+CGG 0.556430 1_4:+56489938 Msa0171760:CDS
ATGGCTGGTGCCTTGTGGAG+AGG 0.556766 1_4:+56492406 Msa0171760:three_prime_UTR
TTGAAGAAGAGACAAGAAGA+AGG 0.558667 1_4:+56493148 Msa0171760:three_prime_UTR
CTTGAATAGGAGGTGATGGC+TGG 0.559632 1_4:+56492391 Msa0171760:three_prime_UTR
TTGGTGGCCTTGGATGAACT+GGG 0.559942 1_4:+56488584 Msa0171760:CDS
CATCCAAAGGAAGAGATTGT+GGG 0.561554 1_4:+56491376 Msa0171760:three_prime_UTR
GAGAAAGGAAAAGAAAATTG+AGG 0.563961 1_4:+56486690 Msa0171760:five_prime_UTR
AAGAAGTTTACGTGCTTCAA+CGG 0.565501 1_4:+56492482 Msa0171760:three_prime_UTR
GATCTACTAGATCTTGCTAC+TGG 0.569155 1_4:+56489903 Msa0171760:CDS
ATGTTATCAGAGGTGTAAGC+GGG 0.569812 1_4:-56488207 None:intergenic
GAGGACACAACAAAAGTGAC+TGG 0.570197 1_4:+56486744 Msa0171760:five_prime_UTR
AGAAAATTGAGGGAAAATTG+AGG 0.570901 1_4:+56486701 Msa0171760:five_prime_UTR
ATATCTGGACAAGATAATAG+AGG 0.572023 1_4:+56492335 Msa0171760:three_prime_UTR
ACCTCTTCCTGGAACAACCT+CGG 0.573838 1_4:-56489395 None:intergenic
AAAAGCAAAACAGAACAGAA+CGG 0.574022 1_4:+56486611 Msa0171760:five_prime_UTR
CTTGACCCGTGCTACCGCAC+GGG 0.574961 1_4:+56493419 Msa0171760:three_prime_UTR
TGTGAGATGTGGTGGAGATG+TGG 0.576409 1_4:+56489974 Msa0171760:CDS
CTTAATGTTGTGAGATGTGG+TGG 0.579950 1_4:+56489966 Msa0171760:CDS
AGGTGATGGCTGGTGCCTTG+TGG 0.582964 1_4:+56492401 Msa0171760:three_prime_UTR
TACCAGAGACCTTTCATGAA+AGG 0.585044 1_4:+56492970 Msa0171760:three_prime_UTR
CGATAATCCCAGTTCATCCA+AGG 0.585497 1_4:-56488591 None:intergenic
AGTGTTAGGTGACGTCGCAA+CGG 0.585928 1_4:+56492124 Msa0171760:three_prime_UTR
CAGAACAGAACGGGACAGAG+AGG 0.586706 1_4:+56486621 Msa0171760:five_prime_UTR
GAGGTTGTTCCAGGAAGAGG+TGG 0.587509 1_4:+56489397 Msa0171760:CDS
TGGAGATGTAAGAGACGCGT+TGG 0.588827 1_4:+56490001 Msa0171760:CDS
CATGCTTGAATAGGAGGTGA+TGG 0.591112 1_4:+56492387 Msa0171760:three_prime_UTR
TCTTGACCCGTGCTACCGCA+CGG 0.591669 1_4:+56493418 Msa0171760:three_prime_UTR
AAGCTAAAACACATCCATGA+AGG 0.592582 1_4:-56493292 None:intergenic
TTTCATCGTGAGCCGAGCAA+AGG 0.595395 1_4:+56491952 Msa0171760:three_prime_UTR
ACAGTTGACAGACATGGAGC+TGG 0.595684 1_4:+56493089 Msa0171760:three_prime_UTR
GATATAGGTTGCTGGTTGCG+AGG 0.595916 1_4:+56489833 Msa0171760:intron
GAGTTGATGAGAGTGATGGT+TGG 0.595956 1_4:+56490095 Msa0171760:CDS
TAATTCATGAGAGTTGAAGA+TGG 0.596013 1_4:+56486838 Msa0171760:exon
CTTACTTGCTAACAACTCCA+TGG 0.600422 1_4:-56492529 None:intergenic
TCTTTGATGAATGAAGATAG+TGG 0.603527 1_4:+56490170 Msa0171760:CDS
AAGATAAAGGAAGTGTTAAG+GGG 0.604994 1_4:+56490057 Msa0171760:CDS
ATAATAGAGGTATATTGCAA+TGG 0.607040 1_4:+56492348 Msa0171760:three_prime_UTR
GCATTTATCCATGTTATCAG+AGG 0.607285 1_4:-56488217 None:intergenic
GCAGTTTCACTTGATCAATG+AGG 0.607876 1_4:+56491401 Msa0171760:three_prime_UTR
TGTACTCTTTGAGCACCACC+AGG 0.609997 1_4:-56493213 None:intergenic
AGAACAGAACGGGACAGAGA+GGG 0.610336 1_4:+56486622 Msa0171760:five_prime_UTR
GAGATGTGGTGGAGATGTGG+TGG 0.610433 1_4:+56489977 Msa0171760:CDS
CCAAAACAGTCCTCTCCACA+AGG 0.612981 1_4:-56492416 None:intergenic
AGCGAGCTTTCAGATTCTCA+AGG 0.614538 1_4:-56489344 None:intergenic
GATGAAGATGATGAGATGCC+TGG 0.615030 1_4:+56493195 Msa0171760:three_prime_UTR
GCAGTTTCACTTGATCAATG+AGG 0.615312 1_4:+56487367 Msa0171760:CDS
TTCTGGTGTTGGAGTGCTGG+CGG 0.616859 1_4:+56489881 Msa0171760:CDS
TATGTTTCAGTACCATCCAA+AGG 0.619822 1_4:+56491363 Msa0171760:intron
TCTTTGATGAATGAAAATAG+AGG 0.621227 1_4:+56490226 Msa0171760:three_prime_UTR
TATGCCCTTAGAAATTTCTG+AGG 0.621828 1_4:+56488258 Msa0171760:CDS
AAGGCAGCAAGCTCAGCAAG+AGG 0.624868 1_4:+56493167 Msa0171760:three_prime_UTR
TCCAAAGCAAGCATTGGACA+AGG 0.628826 1_4:+56487682 Msa0171760:CDS
TGTATCACAGTTGACAGACA+TGG 0.631121 1_4:+56493083 Msa0171760:three_prime_UTR
GCACTGCAACACAGGCACCA+TGG 0.634732 1_4:-56489322 None:intergenic
AGGAAGGAAAGAAAGGTGAA+CGG 0.640297 1_4:+56486785 Msa0171760:five_prime_UTR
GATCATGAGTTAGAGACTCA+GGG 0.641976 1_4:-56493023 None:intergenic
ATGAACCGATGAGTGTCGAA+AGG 0.647445 1_4:+56488558 Msa0171760:CDS
TGTCATCCAGATGTGTGCAA+AGG 0.652092 1_4:+56487329 Msa0171760:intron
AAGAAAGGTGAACGGAACAA+GGG 0.656575 1_4:+56486793 Msa0171760:five_prime_UTR
GATGAAAGTATGTGTGGTGT+CGG 0.656589 1_4:-56491936 None:intergenic
ATGAGTTTGGAGATGTGCTG+TGG 0.657658 1_4:+56493251 Msa0171760:three_prime_UTR
ATCCAAAGGAAGAGATTGTG+GGG 0.658499 1_4:+56491377 Msa0171760:three_prime_UTR
CATGTTATCAGAGGTGTAAG+CGG 0.665124 1_4:-56488208 None:intergenic
ACTGGTTCCTGGTTCGCTGG+AGG 0.665782 1_4:+56488336 Msa0171760:CDS
AGGTTGTTCCAGGAAGAGGT+GGG 0.666221 1_4:+56489398 Msa0171760:CDS
TCCATGAAGGACATCACCAA+AGG 0.666733 1_4:-56493279 None:intergenic
CATGGAGCTGGATGAGTGTG+AGG 0.667513 1_4:+56493101 Msa0171760:three_prime_UTR
TGGTTGCGAGGAAAGTGTTG+AGG 0.674105 1_4:+56489845 Msa0171760:CDS
CAACACTGTCAAGCCCGCAG+AGG 0.696416 1_4:-56492079 None:intergenic
ACTTTACATTAATTTCACTG+TGG 0.705139 1_4:+56492996 Msa0171760:three_prime_UTR
TGGTTCGAGTATGAGGACGA+GGG 0.725606 1_4:+56489923 Msa0171760:CDS
GTGCAAAGGAAGAGATTGTG+AGG 0.727352 1_4:+56487343 Msa0171760:CDS
GCTGCACGAGAAAATATCCG+AGG 0.729454 1_4:+56489378 Msa0171760:CDS
GCTCACGATGAAAGTATGTG+TGG 0.734590 1_4:-56491942 None:intergenic
GAAGATGATGAGATGCCTGG+TGG 0.783796 1_4:+56493198 Msa0171760:three_prime_UTR
TCTTCTTGGAAAGACCCGTG+CGG 0.796231 1_4:-56493433 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATGTAATGATAAATA+AGG + chr1_4:56489089-56489108 Msa0171760:intron 10.0%
!! TAGTAATAAAATAAATTGAA+TGG + chr1_4:56489217-56489236 Msa0171760:intron 10.0%
!! ATTTAATTGTTATAATTGTT+TGG + chr1_4:56491485-56491504 Msa0171760:intron 10.0%
!! TTTAATTGTTATAATTGTTT+GGG + chr1_4:56491486-56491505 Msa0171760:intron 10.0%
!!! ATTGACTAAATTATTTTATT+AGG + chr1_4:56492043-56492062 Msa0171760:intron 10.0%
!!! ATTGTGTTTTTAATTTTTTA+TGG + chr1_4:56492681-56492700 Msa0171760:intron 10.0%
!!! ATGATTTTATTTTTGTATGA+AGG + chr1_4:56487068-56487087 Msa0171760:intron 15.0%
!! GATTAAAATTGTATTTCATA+CGG - chr1_4:56487617-56487636 None:intergenic 15.0%
!!! AAATAAGTTGAAAAAACTTA+TGG - chr1_4:56487900-56487919 None:intergenic 15.0%
!!! TACTAATTATAAAATTTTGC+AGG + chr1_4:56489296-56489315 Msa0171760:intron 15.0%
!!! ACTAATTATAAAATTTTGCA+GGG + chr1_4:56489297-56489316 Msa0171760:intron 15.0%
!!! TAGAATTTGCTTATATATTA+TGG - chr1_4:56489581-56489600 None:intergenic 15.0%
!! TTGCAATTATATTGTTAAAT+TGG - chr1_4:56490925-56490944 None:intergenic 15.0%
!!! TTATTTGCTTCTAAAAAAAT+GGG + chr1_4:56490946-56490965 Msa0171760:intron 15.0%
!! TCTAAATAGATATAAAAATG+TGG + chr1_4:56491287-56491306 Msa0171760:intron 15.0%
!!! GTTTTTTTTGTTGAATATTT+GGG + chr1_4:56491333-56491352 Msa0171760:intron 15.0%
!!! TTTTTAGATCCTTAAATATA+TGG + chr1_4:56491519-56491538 Msa0171760:intron 15.0%
!! AATCAATATCCATATATTTA+AGG - chr1_4:56491531-56491550 None:intergenic 15.0%
!! AAAAGAACAACATTAAAAAT+AGG - chr1_4:56491646-56491665 None:intergenic 15.0%
!!! AAGAATTTTCATATATGAAT+AGG - chr1_4:56492716-56492735 None:intergenic 15.0%
!!! TCTTTTAAAATTAACCATAT+AGG - chr1_4:56493397-56493416 None:intergenic 15.0%
!! AATATAAAAACAACACAAAG+GGG - chr1_4:56486959-56486978 None:intergenic 20.0%
!! GAATATAAAAACAACACAAA+GGG - chr1_4:56486960-56486979 None:intergenic 20.0%
!! AGAATATAAAAACAACACAA+AGG - chr1_4:56486961-56486980 None:intergenic 20.0%
!! ATTGAAGTTTAGAGAAATTA+TGG - chr1_4:56487429-56487448 None:intergenic 20.0%
!!! GAGATATCTTTTTCAATTTT+GGG - chr1_4:56487501-56487520 None:intergenic 20.0%
!!! AGAGATATCTTTTTCAATTT+TGG - chr1_4:56487502-56487521 None:intergenic 20.0%
!!! ATAGCAATTTTTAGAAACAT+AGG - chr1_4:56487562-56487581 None:intergenic 20.0%
!! ATCTTAATCAAATTATACAG+TGG - chr1_4:56488820-56488839 None:intergenic 20.0%
!! TCTCAACAATAATAAATAAG+GGG - chr1_4:56489065-56489084 None:intergenic 20.0%
!! CTCTCAACAATAATAAATAA+GGG - chr1_4:56489066-56489085 None:intergenic 20.0%
!! TCTCTCAACAATAATAAATA+AGG - chr1_4:56489067-56489086 None:intergenic 20.0%
!! TCAAAATGTGACAATTAAAA+AGG + chr1_4:56489186-56489205 Msa0171760:intron 20.0%
!! TAAAAAAAAATGGTCATGTT+TGG + chr1_4:56489551-56489570 Msa0171760:intron 20.0%
!! CAAAAATCAGTCAATTTAAA+TGG + chr1_4:56489666-56489685 Msa0171760:intron 20.0%
!! AAAAACCTCATTAATTGAAA+AGG + chr1_4:56490439-56490458 Msa0171760:intron 20.0%
!!! AATAACCTTTTCAATTAATG+AGG - chr1_4:56490447-56490466 None:intergenic 20.0%
!!! CTTATTTGCTTCTAAAAAAA+TGG + chr1_4:56490945-56490964 Msa0171760:intron 20.0%
!! TATTACTATTACACAACTAA+AGG + chr1_4:56491176-56491195 Msa0171760:intron 20.0%
!! ATTACTATTACACAACTAAA+GGG + chr1_4:56491177-56491196 Msa0171760:intron 20.0%
!! GTTTCATTAAATAGCAATAT+GGG - chr1_4:56491218-56491237 None:intergenic 20.0%
!! AGTTTCATTAAATAGCAATA+TGG - chr1_4:56491219-56491238 None:intergenic 20.0%
!!! GAAACTATAAATAGTCTTTT+TGG + chr1_4:56491233-56491252 Msa0171760:intron 20.0%
!!! ATCGTAATTAGATTTGTTTT+AGG + chr1_4:56491311-56491330 Msa0171760:intron 20.0%
!!! GGTTTTTTTTGTTGAATATT+TGG + chr1_4:56491332-56491351 Msa0171760:intron 20.0%
!! TAACTATGCAATGAAAATTA+AGG - chr1_4:56491465-56491484 None:intergenic 20.0%
!!! ATATGGATATTGATTGATAT+TGG + chr1_4:56491536-56491555 Msa0171760:intron 20.0%
!!! GACTAAATTATTTTATTAGG+TGG + chr1_4:56492046-56492065 Msa0171760:intron 20.0%
!! AAAATTGCTCAGATTATTAA+AGG - chr1_4:56492287-56492306 None:intergenic 20.0%
!!! GTACTAAAATTTCCAATTTT+TGG + chr1_4:56492900-56492919 Msa0171760:intron 20.0%
!!! TTATTTGTTTAACTTCTTCT+TGG - chr1_4:56493450-56493469 None:intergenic 20.0%
! AGAAAGGAAAAGAAAATTGA+GGG + chr1_4:56486691-56486710 Msa0171760:five_prime_UTR 25.0%
!!! TGGTTTTGAGAATTTTCATT+AGG + chr1_4:56487037-56487056 Msa0171760:intron 25.0%
!!! GGTTTTGAGAATTTTCATTA+GGG + chr1_4:56487038-56487057 Msa0171760:intron 25.0%
! TGAAATTCATAGTAGAGAAT+AGG + chr1_4:56487095-56487114 Msa0171760:intron 25.0%
! GAAATTCATAGTAGAGAATA+GGG + chr1_4:56487096-56487115 Msa0171760:intron 25.0%
! AATACACAGCATAAAATTCA+GGG - chr1_4:56487152-56487171 None:intergenic 25.0%
! AAATACACAGCATAAAATTC+AGG - chr1_4:56487153-56487172 None:intergenic 25.0%
!!! TTTTAGAAAACTTGCTTTAC+AGG + chr1_4:56487254-56487273 Msa0171760:intron 25.0%
! TTTGTCTCTAATTTGATTGA+TGG + chr1_4:56487296-56487315 Msa0171760:intron 25.0%
! CTAATTTGATTGATGGAATT+TGG + chr1_4:56487303-56487322 Msa0171760:intron 25.0%
!! GGATAGTTTAGAGAAATTTT+AGG - chr1_4:56487408-56487427 None:intergenic 25.0%
!!! TTCAATTTTGGGATATTTGA+TGG - chr1_4:56487490-56487509 None:intergenic 25.0%
!! TTGCTGAAAAATATTTCTGT+AGG + chr1_4:56487640-56487659 Msa0171760:intron 25.0%
!! TGCTGAAAAATATTTCTGTA+GGG + chr1_4:56487641-56487660 Msa0171760:intron 25.0%
!!! TCCTATTTAGATTAGCTTAT+TGG + chr1_4:56487805-56487824 Msa0171760:intron 25.0%
! TCCAATAAGCTAATCTAAAT+AGG - chr1_4:56487809-56487828 None:intergenic 25.0%
! ATAGTTAATCAAAAGCGAAA+AGG + chr1_4:56488032-56488051 Msa0171760:intron 25.0%
! TAGTTAATCAAAAGCGAAAA+GGG + chr1_4:56488033-56488052 Msa0171760:intron 25.0%
!! CTGGATTTTTATATGGTTTT+AGG + chr1_4:56488181-56488200 Msa0171760:intron 25.0%
!! AAATTTCTGAGGAAGAATTA+AGG + chr1_4:56488269-56488288 Msa0171760:CDS 25.0%
!! AATTTCTGAGGAAGAATTAA+GGG + chr1_4:56488270-56488289 Msa0171760:CDS 25.0%
! TAATGAATACATAACTGCTA+GGG - chr1_4:56488423-56488442 None:intergenic 25.0%
! TTAATGAATACATAACTGCT+AGG - chr1_4:56488424-56488443 None:intergenic 25.0%
! TCAGCTCAATTAATAAACAA+TGG - chr1_4:56488450-56488469 None:intergenic 25.0%
!!! AAGAATGCATTTTTAACTTC+AGG + chr1_4:56488520-56488539 Msa0171760:intron 25.0%
!!! AGAATGCATTTTTAACTTCA+GGG + chr1_4:56488521-56488540 Msa0171760:intron 25.0%
! ATGTAAAGTGACACTTAAAT+AGG - chr1_4:56489004-56489023 None:intergenic 25.0%
! ATGTGACAATTAAAAAGGAA+CGG + chr1_4:56489191-56489210 Msa0171760:intron 25.0%
!! TTACTTAAATTTAAGGCTGT+AGG - chr1_4:56489534-56489553 None:intergenic 25.0%
! CTATCTCATTGAATTACTTA+GGG - chr1_4:56489752-56489771 None:intergenic 25.0%
! TCTTATCTAATGTAACTGAT+AGG + chr1_4:56489790-56489809 Msa0171760:intron 25.0%
! ATTGCTGATGTTAAAGATAA+AGG + chr1_4:56490044-56490063 Msa0171760:CDS 25.0%
!!! TAAAGATAAAGGAAGTGTTA+AGG + chr1_4:56490055-56490074 Msa0171760:CDS 25.0%
!!! AAAGATAAAGGAAGTGTTAA+GGG + chr1_4:56490056-56490075 Msa0171760:CDS 25.0%
! TCTTTGATGAATGAAAATAG+AGG + chr1_4:56490226-56490245 Msa0171760:three_prime_UTR 25.0%
! TTAGAATGTACAACATATCA+TGG - chr1_4:56490414-56490433 None:intergenic 25.0%
!!! CTTTTTGGTTAGTTTCTTTT+TGG + chr1_4:56491248-56491267 Msa0171760:intron 25.0%
!! GGATAGTTTAGTGAAATTTT+AGG - chr1_4:56491444-56491463 None:intergenic 25.0%
!! ATTGGAGATTTAAGATCATT+CGG + chr1_4:56491554-56491573 Msa0171760:intron 25.0%
!!! ATCAATTTTTTCTGGTTGAA+AGG - chr1_4:56491736-56491755 None:intergenic 25.0%
!!! TGGAAAGAATCAATTTTTTC+TGG - chr1_4:56491744-56491763 None:intergenic 25.0%
! CATTCAAATAACTAGATGTT+GGG + chr1_4:56491762-56491781 Msa0171760:intron 25.0%
! TAAAATTGTTAGCAGTCATT+AGG - chr1_4:56491822-56491841 None:intergenic 25.0%
!! TATGCTTTGATTTATTTGAC+AGG + chr1_4:56491846-56491865 Msa0171760:intron 25.0%
! CATACAACTACATTCATTTA+GGG - chr1_4:56491981-56492000 None:intergenic 25.0%
! ACATACAACTACATTCATTT+AGG - chr1_4:56491982-56492001 None:intergenic 25.0%
!! ATAATAGAGGTATATTGCAA+TGG + chr1_4:56492348-56492367 Msa0171760:three_prime_UTR 25.0%
!! CGCTAAAAATTTAGAACTAA+AGG - chr1_4:56492595-56492614 None:intergenic 25.0%
!! TCTATAGGATTTGAGATTTA+AGG + chr1_4:56492801-56492820 Msa0171760:intron 25.0%
!! TGAGTGATTGAAATTTTGTT+TGG + chr1_4:56492872-56492891 Msa0171760:intron 25.0%
!!! ATTGAAATTTTGTTTGGCTT+TGG + chr1_4:56492878-56492897 Msa0171760:intron 25.0%
! AATCTGCAATAACCAAAAAT+TGG - chr1_4:56492915-56492934 None:intergenic 25.0%
! ACTTTACATTAATTTCACTG+TGG + chr1_4:56492996-56493015 Msa0171760:three_prime_UTR 25.0%
! CCATATAGGATATCTTTATA+CGG - chr1_4:56493383-56493402 None:intergenic 25.0%
AAAAGCAAAACAGAACAGAA+CGG + chr1_4:56486611-56486630 Msa0171760:five_prime_UTR 30.0%
GAGAAAGGAAAAGAAAATTG+AGG + chr1_4:56486690-56486709 Msa0171760:five_prime_UTR 30.0%
AGAAAATTGAGGGAAAATTG+AGG + chr1_4:56486701-56486720 Msa0171760:five_prime_UTR 30.0%
! AGGTCTTCATCAAATTTTGT+AGG + chr1_4:56486721-56486740 Msa0171760:five_prime_UTR 30.0%
! GGTCTTCATCAAATTTTGTA+GGG + chr1_4:56486722-56486741 Msa0171760:five_prime_UTR 30.0%
TAATTCATGAGAGTTGAAGA+TGG + chr1_4:56486838-56486857 Msa0171760:exon 30.0%
! GAAAATTTTGCAGAGATTGA+TGG + chr1_4:56486862-56486881 Msa0171760:CDS 30.0%
TTCTGAATCTGATGTTAGAA+AGG + chr1_4:56487230-56487249 Msa0171760:intron 30.0%
! AAAAATATTTCTGTAGGGTG+TGG + chr1_4:56487646-56487665 Msa0171760:intron 30.0%
TTACCATAACGACTAATAGA+AGG - chr1_4:56487728-56487747 None:intergenic 30.0%
AGTGTGAATCAAATTGAAGA+AGG + chr1_4:56488091-56488110 Msa0171760:intron 30.0%
!! ACACTGACTGGATTTTTATA+TGG + chr1_4:56488174-56488193 Msa0171760:intron 30.0%
! TCTAAGGGCATATTAAAGTT+AGG - chr1_4:56488250-56488269 None:intergenic 30.0%
TCTTCCTCAGAAATTTCTAA+GGG - chr1_4:56488265-56488284 None:intergenic 30.0%
TTCTTCCTCAGAAATTTCTA+AGG - chr1_4:56488266-56488285 None:intergenic 30.0%
! ATCCGTATTATGTACCATTT+TGG + chr1_4:56488309-56488328 Msa0171760:CDS 30.0%
GTCCAAAATGGTACATAATA+CGG - chr1_4:56488314-56488333 None:intergenic 30.0%
AATGAATACATAACTGCTAG+GGG - chr1_4:56488422-56488441 None:intergenic 30.0%
TTCAAATTGCATTGTGCATA+AGG - chr1_4:56488656-56488675 None:intergenic 30.0%
!! GTTACGACTTTTGCTATATT+TGG + chr1_4:56488689-56488708 Msa0171760:intron 30.0%
!! CTTTTGCTATATTTGGCAAT+TGG + chr1_4:56488696-56488715 Msa0171760:intron 30.0%
AGCTTAATATTTGCTTCAGT+TGG + chr1_4:56488861-56488880 Msa0171760:intron 30.0%
! CTTCAGTTGGATTTCTTTTA+TGG + chr1_4:56488874-56488893 Msa0171760:intron 30.0%
AAGTGACACTTAAAAAGGAA+CGG - chr1_4:56488962-56488981 None:intergenic 30.0%
!!! TCCTTTTTAAGTGTCACTTT+TGG + chr1_4:56488963-56488982 Msa0171760:intron 30.0%
TCCAAAAGTGACACTTAAAA+AGG - chr1_4:56488967-56488986 None:intergenic 30.0%
! GCAACATTTATTGATTGTCT+TGG + chr1_4:56489150-56489169 Msa0171760:intron 30.0%
ACATAGTGCAGTAGAAAAAA+TGG - chr1_4:56489269-56489288 None:intergenic 30.0%
AAAAAAATGGTCATGTTTGG+TGG + chr1_4:56489554-56489573 Msa0171760:intron 30.0%
TAGCTTGACATGTTTATGAA+TGG + chr1_4:56489599-56489618 Msa0171760:intron 30.0%
CTATCTCATTGTATTGCTTA+GGG - chr1_4:56489700-56489719 None:intergenic 30.0%
GCTATCTCATTGAATTACTT+AGG - chr1_4:56489753-56489772 None:intergenic 30.0%
TAAGAGTTAGTTGTTCTAAC+TGG - chr1_4:56489775-56489794 None:intergenic 30.0%
! AACTTTTGCATCTCTGATAT+AGG + chr1_4:56489818-56489837 Msa0171760:intron 30.0%
!! TTTAAGAATGTTTCTGGTGT+TGG + chr1_4:56489870-56489889 Msa0171760:CDS 30.0%
!! AAGATAAAGGAAGTGTTAAG+GGG + chr1_4:56490057-56490076 Msa0171760:CDS 30.0%
TCTTTGATGAATGAAGATAG+TGG + chr1_4:56490170-56490189 Msa0171760:CDS 30.0%
! CTATTGGTGAAATGAGTTTT+AGG + chr1_4:56490283-56490302 Msa0171760:intron 30.0%
TGAAAAGGTTATTCTTCTTC+CGG + chr1_4:56490454-56490473 Msa0171760:intron 30.0%
!!! AGTGCTTTTGATTTGAAGTT+GGG + chr1_4:56490484-56490503 Msa0171760:intron 30.0%
CAGATAAAATAAGTAGCAAC+TGG - chr1_4:56490670-56490689 None:intergenic 30.0%
! ATTAGTGATTTTGCAAGTCT+CGG + chr1_4:56490824-56490843 Msa0171760:intron 30.0%
ATGCACTGAATAATAGATGT+AGG + chr1_4:56490860-56490879 Msa0171760:intron 30.0%
TGCACTGAATAATAGATGTA+GGG + chr1_4:56490861-56490880 Msa0171760:intron 30.0%
! AAATATGATTGACTAGCTGA+AGG + chr1_4:56491005-56491024 Msa0171760:intron 30.0%
CCAACATCTAGTTATTTGAA+TGG - chr1_4:56491764-56491783 None:intergenic 30.0%
CCATTCAAATAACTAGATGT+TGG + chr1_4:56491761-56491780 Msa0171760:intron 30.0%
CAAGAGTAGCAAAAATTACT+AGG + chr1_4:56491872-56491891 Msa0171760:three_prime_UTR 30.0%
TTAGTCAATAAAAACCCTGT+AGG - chr1_4:56492032-56492051 None:intergenic 30.0%
CCAAATTGAAAGACATTCAA+CGG - chr1_4:56492191-56492210 None:intergenic 30.0%
! TAATCTGAGCAATTTTATGC+AGG + chr1_4:56492291-56492310 Msa0171760:intron 30.0%
! AATCTGAGCAATTTTATGCA+GGG + chr1_4:56492292-56492311 Msa0171760:intron 30.0%
ATATCTGGACAAGATAATAG+AGG + chr1_4:56492335-56492354 Msa0171760:three_prime_UTR 30.0%
! TTGTTAGCAAGTAAGTTTTG+TGG + chr1_4:56492537-56492556 Msa0171760:intron 30.0%
TAAAGTTTGCCTTTCATGAA+AGG - chr1_4:56492982-56493001 None:intergenic 30.0%
TCTAACTCATGATCAAGTTA+AGG + chr1_4:56493032-56493051 Msa0171760:three_prime_UTR 30.0%
CCGTATAAAGATATCCTATA+TGG + chr1_4:56493380-56493399 Msa0171760:three_prime_UTR 30.0%
AAAGCAAAACAGAACAGAAC+GGG + chr1_4:56486612-56486631 Msa0171760:five_prime_UTR 35.0%
! CTTCATCAAATTTTGTAGGG+AGG + chr1_4:56486725-56486744 Msa0171760:five_prime_UTR 35.0%
ACTGGAGAAAGGAAAAGAAA+AGG + chr1_4:56486762-56486781 Msa0171760:five_prime_UTR 35.0%
AAAGGAAAAGAAAAGGAGGA+AGG + chr1_4:56486769-56486788 Msa0171760:five_prime_UTR 35.0%
AACAACACAAAGGGGAAAAA+AGG - chr1_4:56486951-56486970 None:intergenic 35.0%
GTGTTGAATTAGTTGCATGT+AGG + chr1_4:56487006-56487025 Msa0171760:intron 35.0%
!! GTTGCATGTAGGTATTGATT+TGG + chr1_4:56487017-56487036 Msa0171760:intron 35.0%
! AGTCGTTATGGTAATGATGA+AGG + chr1_4:56487734-56487753 Msa0171760:CDS 35.0%
CATAGCAGCATTAGTGAAAA+AGG + chr1_4:56487769-56487788 Msa0171760:intron 35.0%
!! GTTGTTTTCAGAAGCTATCT+TGG - chr1_4:56487934-56487953 None:intergenic 35.0%
GCATTTATCCATGTTATCAG+AGG - chr1_4:56488220-56488239 None:intergenic 35.0%
TATGCCCTTAGAAATTTCTG+AGG + chr1_4:56488258-56488277 Msa0171760:CDS 35.0%
! ATGTACCATTTTGGACAAAC+TGG + chr1_4:56488318-56488337 Msa0171760:CDS 35.0%
!!! CATTTTTAACTTCAGGGAAG+TGG + chr1_4:56488527-56488546 Msa0171760:intron 35.0%
AAAAACCTTTCGACACTCAT+CGG - chr1_4:56488566-56488585 None:intergenic 35.0%
TTGCCAATGTACAGACAAAT+GGG - chr1_4:56488756-56488775 None:intergenic 35.0%
ATTGCCAATGTACAGACAAA+TGG - chr1_4:56488757-56488776 None:intergenic 35.0%
ATTTGTCTGTACATTGGCAA+TGG + chr1_4:56488756-56488775 Msa0171760:intron 35.0%
CTCCTTCATTGTATGACAAA+GGG - chr1_4:56488795-56488814 None:intergenic 35.0%
TCTCCTTCATTGTATGACAA+AGG - chr1_4:56488796-56488815 None:intergenic 35.0%
! GGAGTATTCAACATTATGCA+CGG - chr1_4:56488937-56488956 None:intergenic 35.0%
TGACAATTAAAAAGGAACGG+AGG + chr1_4:56489194-56489213 Msa0171760:intron 35.0%
! TAAAATTTTGCAGGGATCCA+TGG + chr1_4:56489305-56489324 Msa0171760:intron 35.0%
TTCAACATAACCATCAACAG+CGG - chr1_4:56489490-56489509 None:intergenic 35.0%
!! GTTGATGGTTATGTTGAATC+AGG + chr1_4:56489492-56489511 Msa0171760:intron 35.0%
ATTGTATTGCTTAGGGCTTA+GGG - chr1_4:56489693-56489712 None:intergenic 35.0%
GCTATCTCATTGTATTGCTT+AGG - chr1_4:56489701-56489720 None:intergenic 35.0%
AAGCAATACAATGAGATAGC+CGG + chr1_4:56489701-56489720 Msa0171760:intron 35.0%
TAGAACAACTAACTCCCAAA+TGG + chr1_4:56489725-56489744 Msa0171760:intron 35.0%
AGAACAACTAACTCCCAAAT+GGG + chr1_4:56489726-56489745 Msa0171760:intron 35.0%
TTGCTTAATGTTGTGAGATG+TGG + chr1_4:56489963-56489982 Msa0171760:CDS 35.0%
!!! TTTTGAGTTGATGAGAGTGA+TGG + chr1_4:56490091-56490110 Msa0171760:CDS 35.0%
!!! GGTAATGTCGTTTTGAATAG+TGG + chr1_4:56490134-56490153 Msa0171760:CDS 35.0%
!! AGGTACGTTGATTTGAATAG+TGG + chr1_4:56490246-56490265 Msa0171760:intron 35.0%
! TGAATAGTGGTTCATCGTTT+TGG + chr1_4:56490259-56490278 Msa0171760:intron 35.0%
!!! TGGTGAAATGAGTTTTAGGT+TGG + chr1_4:56490287-56490306 Msa0171760:intron 35.0%
!!! TGAAATGAGTTTTAGGTTGG+CGG + chr1_4:56490290-56490309 Msa0171760:intron 35.0%
!!! GAGTGCTTTTGATTTGAAGT+TGG + chr1_4:56490483-56490502 Msa0171760:intron 35.0%
CCTTGTAGGATTTCACTAAT+GGG - chr1_4:56490735-56490754 None:intergenic 35.0%
ACCTTGTAGGATTTCACTAA+TGG - chr1_4:56490736-56490755 None:intergenic 35.0%
TATTCAGTGCATGTGTGAAT+GGG - chr1_4:56490852-56490871 None:intergenic 35.0%
TTATTCAGTGCATGTGTGAA+TGG - chr1_4:56490853-56490872 None:intergenic 35.0%
GCACTGAATAATAGATGTAG+GGG + chr1_4:56490862-56490881 Msa0171760:intron 35.0%
CACTGAATAATAGATGTAGG+GGG + chr1_4:56490863-56490882 Msa0171760:intron 35.0%
TTCTCACAACTTCAATTCCT+TGG + chr1_4:56491035-56491054 Msa0171760:intron 35.0%
TATGTTTCAGTACCATCCAA+AGG + chr1_4:56491363-56491382 Msa0171760:intron 35.0%
AAGATGAGTGCAATTTGTGA+AGG + chr1_4:56491613-56491632 Msa0171760:intron 35.0%
TTTCCTAGTCGAAAAGGAAA+GGG - chr1_4:56491688-56491707 None:intergenic 35.0%
! TTTTCCTAGTCGAAAAGGAA+AGG - chr1_4:56491689-56491708 None:intergenic 35.0%
! CCAAATTTTCCTAGTCGAAA+AGG - chr1_4:56491694-56491713 None:intergenic 35.0%
! CCTTTTCGACTAGGAAAATT+TGG + chr1_4:56491691-56491710 Msa0171760:intron 35.0%
!! ACAGAATGTTTTTGCCTACA+GGG + chr1_4:56492015-56492034 Msa0171760:intron 35.0%
TATGACAGATTGACAGTGTT+AGG + chr1_4:56492110-56492129 Msa0171760:three_prime_UTR 35.0%
!! ACGGTATTCAGTTTTGTATC+CGG - chr1_4:56492172-56492191 None:intergenic 35.0%
CCGTTGAATGTCTTTCAATT+TGG + chr1_4:56492188-56492207 Msa0171760:intron 35.0%
AGGTGTGAGGTAATGTAAAA+TGG - chr1_4:56492267-56492286 None:intergenic 35.0%
! CTCAGATTATTAAAGGTGTG+AGG - chr1_4:56492280-56492299 None:intergenic 35.0%
AAGAAGTTTACGTGCTTCAA+CGG + chr1_4:56492482-56492501 Msa0171760:three_prime_UTR 35.0%
! AACCCAACTTGATAATACCA+AGG + chr1_4:56492763-56492782 Msa0171760:intron 35.0%
! ACCCAACTTGATAATACCAA+GGG + chr1_4:56492764-56492783 Msa0171760:intron 35.0%
!!! GTTTTTTTCTCTCTGACATC+TGG + chr1_4:56492825-56492844 Msa0171760:intron 35.0%
GGTTATTGCAGATTCTTACA+AGG + chr1_4:56492921-56492940 Msa0171760:intron 35.0%
TACAAGGCAATCAATGATGA+AGG + chr1_4:56492937-56492956 Msa0171760:three_prime_UTR 35.0%
TCATGATCAAGTTAAGGCTT+TGG + chr1_4:56493038-56493057 Msa0171760:three_prime_UTR 35.0%
TTGAAGAAGAGACAAGAAGA+AGG + chr1_4:56493148-56493167 Msa0171760:three_prime_UTR 35.0%
AAGCTAAAACACATCCATGA+AGG - chr1_4:56493295-56493314 None:intergenic 35.0%
!!! TGGATGTGTTTTAGCTTTGT+TGG + chr1_4:56493298-56493317 Msa0171760:three_prime_UTR 35.0%
!!! GGATGTGTTTTAGCTTTGTT+GGG + chr1_4:56493299-56493318 Msa0171760:three_prime_UTR 35.0%
AGGAGAAGAAGGAAAAGAAG+AGG + chr1_4:56486654-56486673 Msa0171760:five_prime_UTR 40.0%
AGAAGAAGGAAAAGAAGAGG+AGG + chr1_4:56486657-56486676 Msa0171760:five_prime_UTR 40.0%
AAAGAAGAGGAGGAAAGTGA+CGG + chr1_4:56486667-56486686 Msa0171760:five_prime_UTR 40.0%
CAACAAAAGTGACTGGAGAA+AGG + chr1_4:56486751-56486770 Msa0171760:five_prime_UTR 40.0%
GGAGAAAGGAAAAGAAAAGG+AGG + chr1_4:56486765-56486784 Msa0171760:five_prime_UTR 40.0%
GAAAAGGAGGAAGGAAAGAA+AGG + chr1_4:56486778-56486797 Msa0171760:five_prime_UTR 40.0%
AGGAAGGAAAGAAAGGTGAA+CGG + chr1_4:56486785-56486804 Msa0171760:five_prime_UTR 40.0%
AAAGAAAGGTGAACGGAACA+AGG + chr1_4:56486792-56486811 Msa0171760:five_prime_UTR 40.0%
AAGAAAGGTGAACGGAACAA+GGG + chr1_4:56486793-56486812 Msa0171760:five_prime_UTR 40.0%
! ACATCAGATTCAGAAGCACA+AGG - chr1_4:56487225-56487244 None:intergenic 40.0%
GCAGTTTCACTTGATCAATG+AGG + chr1_4:56487367-56487386 Msa0171760:CDS 40.0%
GGCAGAGATTTCATGTAGTA+AGG - chr1_4:56487469-56487488 None:intergenic 40.0%
TTCTGTAGGGTGTGGTTTAT+TGG + chr1_4:56487654-56487673 Msa0171760:intron 40.0%
GAGCCTTCTATTAGTCGTTA+TGG + chr1_4:56487722-56487741 Msa0171760:CDS 40.0%
ACTAATGCTGCTATGAGTTC+AGG - chr1_4:56487764-56487783 None:intergenic 40.0%
!! ACAACTTGCTTTTGTCTCTG+AGG + chr1_4:56488116-56488135 Msa0171760:intron 40.0%
! ATGTTATCAGAGGTGTAAGC+GGG - chr1_4:56488210-56488229 None:intergenic 40.0%
! CATGTTATCAGAGGTGTAAG+CGG - chr1_4:56488211-56488230 None:intergenic 40.0%
! AAGAATTAAGGGCATGCTTG+AGG + chr1_4:56488281-56488300 Msa0171760:CDS 40.0%
! AGAATTAAGGGCATGCTTGA+GGG + chr1_4:56488282-56488301 Msa0171760:CDS 40.0%
AGGAACCAGTTTGTCCAAAA+TGG - chr1_4:56488326-56488345 None:intergenic 40.0%
!! ATTTTGGACAAACTGGTTCC+TGG + chr1_4:56488325-56488344 Msa0171760:CDS 40.0%
!!! GATGAGTGTCGAAAGGTTTT+TGG + chr1_4:56488565-56488584 Msa0171760:CDS 40.0%
CTTGGATGAACTGGGATTAT+CGG + chr1_4:56488592-56488611 Msa0171760:CDS 40.0%
TTGGATGAACTGGGATTATC+GGG + chr1_4:56488593-56488612 Msa0171760:CDS 40.0%
AATTGGCTGTCCTTGATTCA+AGG + chr1_4:56488713-56488732 Msa0171760:intron 40.0%
ATTGGCTGTCCTTGATTCAA+GGG + chr1_4:56488714-56488733 Msa0171760:intron 40.0%
TACCCCATTTGTCTGTACAT+TGG + chr1_4:56488750-56488769 Msa0171760:intron 40.0%
TGCCAATGTACAGACAAATG+GGG - chr1_4:56488755-56488774 None:intergenic 40.0%
CACCCTTTGTCATACAATGA+AGG + chr1_4:56488790-56488809 Msa0171760:intron 40.0%
GACACTTAAAAAGGAACGGA+GGG - chr1_4:56488958-56488977 None:intergenic 40.0%
TGACACTTAAAAAGGAACGG+AGG - chr1_4:56488959-56488978 None:intergenic 40.0%
AAAATATCCGAGGTTGTTCC+AGG + chr1_4:56489388-56489407 Msa0171760:CDS 40.0%
TTCTTCAAGGGATGTTAGGA+CGG - chr1_4:56489430-56489449 None:intergenic 40.0%
! GGAAATTTGAAGCATCCTTG+AGG - chr1_4:56489464-56489483 None:intergenic 40.0%
AATTTCCAATCCGCTGTTGA+TGG + chr1_4:56489477-56489496 Msa0171760:intron 40.0%
CATTGTATTGCTTAGGGCTT+AGG - chr1_4:56489694-56489713 None:intergenic 40.0%
TGGGAGTTAGTTGTTCTAAC+CGG - chr1_4:56489723-56489742 None:intergenic 40.0%
GAATTACTTAGGGCCCATTT+GGG - chr1_4:56489742-56489761 None:intergenic 40.0%
TGAATTACTTAGGGCCCATT+TGG - chr1_4:56489743-56489762 None:intergenic 40.0%
! GAGGCGTTTAAGAATGTTTC+TGG + chr1_4:56489864-56489883 Msa0171760:CDS 40.0%
GATCTACTAGATCTTGCTAC+TGG + chr1_4:56489903-56489922 Msa0171760:CDS 40.0%
CTTAATGTTGTGAGATGTGG+TGG + chr1_4:56489966-56489985 Msa0171760:CDS 40.0%
AACATCAGCAATTCCATCCA+TGG - chr1_4:56490036-56490055 None:intergenic 40.0%
!! GTTGGTGATGTTCGTAATCA+TGG + chr1_4:56490113-56490132 Msa0171760:CDS 40.0%
TTGAATAGTGGTTCGTCGTT+CGG + chr1_4:56490146-56490165 Msa0171760:CDS 40.0%
!! TAGTGGTACGTCGTTTTGAA+TGG + chr1_4:56490187-56490206 Msa0171760:exon 40.0%
!! GGTTCATCGTTTTGGTCTAT+TGG + chr1_4:56490267-56490286 Msa0171760:intron 40.0%
!! ATCAAAAGCACTCTACACAC+CGG - chr1_4:56490476-56490495 None:intergenic 40.0%
CCCATTAGTGAAATCCTACA+AGG + chr1_4:56490732-56490751 Msa0171760:intron 40.0%
GTGATAGCATAGTACCTTGT+AGG - chr1_4:56490749-56490768 None:intergenic 40.0%
! CAAGGTACTATGCTATCACT+AGG + chr1_4:56490750-56490769 Msa0171760:intron 40.0%
TTCCTTGGAAGCTTATCACA+AGG + chr1_4:56491050-56491069 Msa0171760:intron 40.0%
ATCCTTGTGATAAGCTTCCA+AGG - chr1_4:56491055-56491074 None:intergenic 40.0%
ATTCATGCAATGTGAGGGTA+AGG - chr1_4:56491113-56491132 None:intergenic 40.0%
CTGCTATTCATGCAATGTGA+GGG - chr1_4:56491118-56491137 None:intergenic 40.0%
ACTGCTATTCATGCAATGTG+AGG - chr1_4:56491119-56491138 None:intergenic 40.0%
TCCACAACACAGTCACAATT+AGG + chr1_4:56491138-56491157 Msa0171760:intron 40.0%
TCCTAATTGTGACTGTGTTG+TGG - chr1_4:56491142-56491161 None:intergenic 40.0%
CATCCAAAGGAAGAGATTGT+GGG + chr1_4:56491376-56491395 Msa0171760:three_prime_UTR 40.0%
ATCCAAAGGAAGAGATTGTG+GGG + chr1_4:56491377-56491396 Msa0171760:three_prime_UTR 40.0%
GCAGTTTCACTTGATCAATG+AGG + chr1_4:56487367-56487386 Msa0171760:CDS 40.0%
AACTAGATGTTGGGAACTGT+TGG + chr1_4:56491771-56491790 Msa0171760:intron 40.0%
ACTAGATGTTGGGAACTGTT+GGG + chr1_4:56491772-56491791 Msa0171760:intron 40.0%
TGTCGGTAGAATTACGACTT+TGG - chr1_4:56491922-56491941 None:intergenic 40.0%
! GATGAAAGTATGTGTGGTGT+CGG - chr1_4:56491939-56491958 None:intergenic 40.0%
!! CACAGAATGTTTTTGCCTAC+AGG + chr1_4:56492014-56492033 Msa0171760:intron 40.0%
! GGAAAAAAGGTACACATCAC+CGG + chr1_4:56492150-56492169 Msa0171760:intron 40.0%
TGGAGTAGAATCATATGCAC+AGG - chr1_4:56492247-56492266 None:intergenic 40.0%
GAGGTATATTGCAATGGTGT+TGG + chr1_4:56492354-56492373 Msa0171760:three_prime_UTR 40.0%
!! AGTGATTGATTTGTCTGCCA+TGG + chr1_4:56492512-56492531 Msa0171760:three_prime_UTR 40.0%
! CTTACTTGCTAACAACTCCA+TGG - chr1_4:56492532-56492551 None:intergenic 40.0%
ATGTGTATGTTGTCGCAGAT+TGG + chr1_4:56492640-56492659 Msa0171760:intron 40.0%
GCCCTTGGTATTATCAAGTT+GGG - chr1_4:56492768-56492787 None:intergenic 40.0%
GCGACATCAAATGCTTCTAT+AGG + chr1_4:56492786-56492805 Msa0171760:intron 40.0%
ATGAAAGGTCTCTGGTACAT+TGG - chr1_4:56492967-56492986 None:intergenic 40.0%
TACCAGAGACCTTTCATGAA+AGG + chr1_4:56492970-56492989 Msa0171760:three_prime_UTR 40.0%
GATCATGAGTTAGAGACTCA+GGG - chr1_4:56493026-56493045 None:intergenic 40.0%
TGATCATGAGTTAGAGACTC+AGG - chr1_4:56493027-56493046 None:intergenic 40.0%
ATGTCTGTCAACTGTGATAC+AGG - chr1_4:56493084-56493103 None:intergenic 40.0%
TGTATCACAGTTGACAGACA+TGG + chr1_4:56493083-56493102 Msa0171760:three_prime_UTR 40.0%
CTTTGTTGGGCTAAACATAG+TGG + chr1_4:56493312-56493331 Msa0171760:three_prime_UTR 40.0%
AAGAAGAGGAGGAAAGTGAC+GGG + chr1_4:56486668-56486687 Msa0171760:five_prime_UTR 45.0%
GAGGACACAACAAAAGTGAC+TGG + chr1_4:56486744-56486763 Msa0171760:five_prime_UTR 45.0%
TGAACGGAACAAGGGAAGAT+TGG + chr1_4:56486801-56486820 Msa0171760:five_prime_UTR 45.0%
TGTCATCCAGATGTGTGCAA+AGG + chr1_4:56487329-56487348 Msa0171760:intron 45.0%
TCTCTTCCTTTGCACACATC+TGG - chr1_4:56487338-56487357 None:intergenic 45.0%
GTGCAAAGGAAGAGATTGTG+AGG + chr1_4:56487343-56487362 Msa0171760:CDS 45.0%
TTGTCCAATGCTTGCTTTGG+AGG - chr1_4:56487683-56487702 None:intergenic 45.0%
!! TCCAAAGCAAGCATTGGACA+AGG + chr1_4:56487682-56487701 Msa0171760:CDS 45.0%
TCCTTGTCCAATGCTTGCTT+TGG - chr1_4:56487686-56487705 None:intergenic 45.0%
TCCATATCTACGACACTGAC+TGG + chr1_4:56488162-56488181 Msa0171760:intron 45.0%
TCCAGTCAGTGTCGTAGATA+TGG - chr1_4:56488166-56488185 None:intergenic 45.0%
CGCTTACACCTCTGATAACA+TGG + chr1_4:56488209-56488228 Msa0171760:CDS 45.0%
!! ATGAACCGATGAGTGTCGAA+AGG + chr1_4:56488558-56488577 Msa0171760:CDS 45.0%
!!! GAGTGTCGAAAGGTTTTTGG+TGG + chr1_4:56488568-56488587 Msa0171760:CDS 45.0%
CGATAATCCCAGTTCATCCA+AGG - chr1_4:56488594-56488613 None:intergenic 45.0%
GGGATTTGAATTGTCAGAGC+TGG + chr1_4:56488613-56488632 Msa0171760:CDS 45.0%
! ACCCAGCTTTATACGAGCAT+AGG + chr1_4:56488911-56488930 Msa0171760:intron 45.0%
GCCTATGCTCGTATAAAGCT+GGG - chr1_4:56488915-56488934 None:intergenic 45.0%
AGCGAGCTTTCAGATTCTCA+AGG - chr1_4:56489347-56489366 None:intergenic 45.0%
TCTTCAAGGGATGTTAGGAC+GGG - chr1_4:56489429-56489448 None:intergenic 45.0%
CGGTTTCTTCAAGGGATGTT+AGG - chr1_4:56489434-56489453 None:intergenic 45.0%
!! GCGACTATCGGTTTCTTCAA+GGG - chr1_4:56489442-56489461 None:intergenic 45.0%
CATAACCATCAACAGCGGAT+TGG - chr1_4:56489485-56489504 None:intergenic 45.0%
GCATCTCTGATATAGGTTGC+TGG + chr1_4:56489825-56489844 Msa0171760:intron 45.0%
!! TTGCTACTGGTTCGAGTATG+AGG + chr1_4:56489916-56489935 Msa0171760:CDS 45.0%
AAGTGTTAAGGGGCAGAGTA+AGG + chr1_4:56490067-56490086 Msa0171760:CDS 45.0%
!! GAGTTGATGAGAGTGATGGT+TGG + chr1_4:56490095-56490114 Msa0171760:CDS 45.0%
!! TGGTACGTCGTTTTGAATGG+TGG + chr1_4:56490190-56490209 Msa0171760:exon 45.0%
TTGAATGGTGGTTCGTCGTT+TGG + chr1_4:56490202-56490221 Msa0171760:exon 45.0%
TCATACAGAGCTCCACATTC+TGG + chr1_4:56491083-56491102 Msa0171760:intron 45.0%
CCACAATCTCTTCCTTTGGA+TGG - chr1_4:56491378-56491397 None:intergenic 45.0%
CCATCCAAAGGAAGAGATTG+TGG + chr1_4:56491375-56491394 Msa0171760:three_prime_UTR 45.0%
TAGTCGAAAAGGAAAGGGTG+AGG - chr1_4:56491683-56491702 None:intergenic 45.0%
! TCACCCTTTCCTTTTCGACT+AGG + chr1_4:56491682-56491701 Msa0171760:intron 45.0%
! GCTCACGATGAAAGTATGTG+TGG - chr1_4:56491945-56491964 None:intergenic 45.0%
CATTTAGGGAGACCTTTGCT+CGG - chr1_4:56491967-56491986 None:intergenic 45.0%
!! GTCGCAACGGATTGGAAAAA+AGG + chr1_4:56492137-56492156 Msa0171760:three_prime_UTR 45.0%
GCTGCAGTTGCTAAGATATC+TGG + chr1_4:56492320-56492339 Msa0171760:three_prime_UTR 45.0%
! ATCCGAGAGCATGCTTGAAT+AGG + chr1_4:56492378-56492397 Msa0171760:three_prime_UTR 45.0%
CTCCTATTCAAGCATGCTCT+CGG - chr1_4:56492383-56492402 None:intergenic 45.0%
CATGCTTGAATAGGAGGTGA+TGG + chr1_4:56492387-56492406 Msa0171760:three_prime_UTR 45.0%
!!! CTGTTTTGGTTGCTGCTATG+AGG + chr1_4:56492430-56492449 Msa0171760:three_prime_UTR 45.0%
CGCCCTTGGTATTATCAAGT+TGG - chr1_4:56492769-56492788 None:intergenic 45.0%
TGCCTTTCATGAAAGGTCTC+TGG - chr1_4:56492975-56492994 None:intergenic 45.0%
GATGAAGATGATGAGATGCC+TGG + chr1_4:56493195-56493214 Msa0171760:three_prime_UTR 45.0%
GTGCTCAGCAGTAATGAGTT+TGG + chr1_4:56493238-56493257 Msa0171760:three_prime_UTR 45.0%
ATGAGTTTGGAGATGTGCTG+TGG + chr1_4:56493251-56493270 Msa0171760:three_prime_UTR 45.0%
ATGTGCTGTGGTAGAACCTT+TGG + chr1_4:56493263-56493282 Msa0171760:three_prime_UTR 45.0%
!! ACCTTTGGTGATGTCCTTCA+TGG + chr1_4:56493278-56493297 Msa0171760:three_prime_UTR 45.0%
TCCATGAAGGACATCACCAA+AGG - chr1_4:56493282-56493301 None:intergenic 45.0%
!!! TTTTTTTTTACTTAAATTTA+AGG - chr1_4:56489541-56489560 None:intergenic 5.0%
!! TAAATTTAAGTAAAAAAAAA+TGG + chr1_4:56489541-56489560 Msa0171760:intron 5.0%
AGAACAGAACGGGACAGAGA+GGG + chr1_4:56486622-56486641 Msa0171760:five_prime_UTR 50.0%
AGGGAAGATTGGAGAGAAGC+TGG + chr1_4:56486812-56486831 Msa0171760:five_prime_UTR 50.0%
GCAACCTCCAAAGCAAGCAT+TGG + chr1_4:56487676-56487695 Msa0171760:CDS 50.0%
GGGTATCAGAAACGAGCATG+CGG + chr1_4:56488053-56488072 Msa0171760:intron 50.0%
TATCAGAAACGAGCATGCGG+TGG + chr1_4:56488056-56488075 Msa0171760:intron 50.0%
ATCAGAAACGAGCATGCGGT+GGG + chr1_4:56488057-56488076 Msa0171760:intron 50.0%
!!! CGAAAGGTTTTTGGTGGCCT+TGG + chr1_4:56488574-56488593 Msa0171760:CDS 50.0%
! TTTGGTGGCCTTGGATGAAC+TGG + chr1_4:56488583-56488602 Msa0171760:CDS 50.0%
! TTGGTGGCCTTGGATGAACT+GGG + chr1_4:56488584-56488603 Msa0171760:CDS 50.0%
TGAATTGTCAGAGCTGGAGC+AGG + chr1_4:56488619-56488638 Msa0171760:CDS 50.0%
TCAAGCCAGCCCTTGAATCA+AGG - chr1_4:56488726-56488745 None:intergenic 50.0%
GGCCTATGCTCGTATAAAGC+TGG - chr1_4:56488916-56488935 None:intergenic 50.0%
!! TTCTCAAGGCACTGCAACAC+AGG - chr1_4:56489333-56489352 None:intergenic 50.0%
GCTGCACGAGAAAATATCCG+AGG + chr1_4:56489378-56489397 Msa0171760:CDS 50.0%
ACCTCTTCCTGGAACAACCT+CGG - chr1_4:56489398-56489417 None:intergenic 50.0%
AGGTTGTTCCAGGAAGAGGT+GGG + chr1_4:56489398-56489417 Msa0171760:CDS 50.0%
!! GGCGACTATCGGTTTCTTCA+AGG - chr1_4:56489443-56489462 None:intergenic 50.0%
AGAAACCGATAGTCGCCTCA+AGG + chr1_4:56489446-56489465 Msa0171760:intron 50.0%
AGCATCCTTGAGGCGACTAT+CGG - chr1_4:56489454-56489473 None:intergenic 50.0%
! GATATAGGTTGCTGGTTGCG+AGG + chr1_4:56489833-56489852 Msa0171760:intron 50.0%
!! TGGTTGCGAGGAAAGTGTTG+AGG + chr1_4:56489845-56489864 Msa0171760:CDS 50.0%
!! TGTTTCTGGTGTTGGAGTGC+TGG + chr1_4:56489878-56489897 Msa0171760:CDS 50.0%
TGGTTCGAGTATGAGGACGA+GGG + chr1_4:56489923-56489942 Msa0171760:CDS 50.0%
GACGAGGGAAAATGCAGTGT+CGG + chr1_4:56489938-56489957 Msa0171760:CDS 50.0%
! TGTGAGATGTGGTGGAGATG+TGG + chr1_4:56489974-56489993 Msa0171760:CDS 50.0%
TGGAGATGTAAGAGACGCGT+TGG + chr1_4:56490001-56490020 Msa0171760:CDS 50.0%
GGGTAAGGAGTTCCAGAATG+TGG - chr1_4:56491098-56491117 None:intergenic 50.0%
CACCCCACAATCTCTTCCTT+TGG - chr1_4:56491382-56491401 None:intergenic 50.0%
TTTCATCGTGAGCCGAGCAA+AGG + chr1_4:56491952-56491971 Msa0171760:three_prime_UTR 50.0%
AGTGTTAGGTGACGTCGCAA+CGG + chr1_4:56492124-56492143 Msa0171760:three_prime_UTR 50.0%
! CGAGAGCATGCTTGAATAGG+AGG + chr1_4:56492381-56492400 Msa0171760:three_prime_UTR 50.0%
! CTTGAATAGGAGGTGATGGC+TGG + chr1_4:56492391-56492410 Msa0171760:three_prime_UTR 50.0%
CCAAAACAGTCCTCTCCACA+AGG - chr1_4:56492419-56492438 None:intergenic 50.0%
! CCTTGTGGAGAGGACTGTTT+TGG + chr1_4:56492416-56492435 Msa0171760:three_prime_UTR 50.0%
! GAAGCATTTGATGTCGCCCT+TGG - chr1_4:56492783-56492802 None:intergenic 50.0%
TGGAGACAATTCTGCCAGCA+AGG + chr1_4:56493058-56493077 Msa0171760:three_prime_UTR 50.0%
AACTGTGATACAGGCCTTGC+TGG - chr1_4:56493075-56493094 None:intergenic 50.0%
ACAGTTGACAGACATGGAGC+TGG + chr1_4:56493089-56493108 Msa0171760:three_prime_UTR 50.0%
GAAGATGATGAGATGCCTGG+TGG + chr1_4:56493198-56493217 Msa0171760:three_prime_UTR 50.0%
TGTACTCTTTGAGCACCACC+AGG - chr1_4:56493216-56493235 None:intergenic 50.0%
TCTTCTTGGAAAGACCCGTG+CGG - chr1_4:56493436-56493455 None:intergenic 50.0%
CAGAACAGAACGGGACAGAG+AGG + chr1_4:56486621-56486640 Msa0171760:five_prime_UTR 55.0%
! GGAGGAAAGTGACGGGAGAA+AGG + chr1_4:56486675-56486694 Msa0171760:five_prime_UTR 55.0%
! CAAACTGGTTCCTGGTTCGC+TGG + chr1_4:56488333-56488352 Msa0171760:CDS 55.0%
GCTGTCCTTGATTCAAGGGC+TGG + chr1_4:56488718-56488737 Msa0171760:intron 55.0%
TCCGAGGTTGTTCCAGGAAG+AGG + chr1_4:56489394-56489413 Msa0171760:CDS 55.0%
GAGGTTGTTCCAGGAAGAGG+TGG + chr1_4:56489397-56489416 Msa0171760:CDS 55.0%
!! TTCTGGTGTTGGAGTGCTGG+CGG + chr1_4:56489881-56489900 Msa0171760:CDS 55.0%
! CTGGTTCGAGTATGAGGACG+AGG + chr1_4:56489922-56489941 Msa0171760:CDS 55.0%
! GAGATGTGGTGGAGATGTGG+TGG + chr1_4:56489977-56489996 Msa0171760:CDS 55.0%
! GTAAGAGACGCGTTGGCGTT+TGG + chr1_4:56490008-56490027 Msa0171760:CDS 55.0%
!! TTGGCGTTTGGTGCCATGGA+TGG + chr1_4:56490020-56490039 Msa0171760:CDS 55.0%
TCTGCGGGCTTGACAGTGTT+GGG + chr1_4:56492081-56492100 Msa0171760:three_prime_UTR 55.0%
TAGGTGACGTCGCAACGGAT+TGG + chr1_4:56492129-56492148 Msa0171760:three_prime_UTR 55.0%
CATGGAGCTGGATGAGTGTG+AGG + chr1_4:56493101-56493120 Msa0171760:three_prime_UTR 55.0%
AAGGCAGCAAGCTCAGCAAG+AGG + chr1_4:56493167-56493186 Msa0171760:three_prime_UTR 55.0%
AACGGGACAGAGAGGGTCGA+GGG + chr1_4:56486629-56486648 Msa0171760:five_prime_UTR 60.0%
GGTCGAGGGAGAGGAGAAGA+AGG + chr1_4:56486643-56486662 Msa0171760:five_prime_UTR 60.0%
AACGAGCATGCGGTGGGAAC+AGG + chr1_4:56488063-56488082 Msa0171760:intron 60.0%
AGCATGCGGTGGGAACAGGA+GGG + chr1_4:56488067-56488086 Msa0171760:intron 60.0%
! ACTGGTTCCTGGTTCGCTGG+AGG + chr1_4:56488336-56488355 Msa0171760:CDS 60.0%
CCTACTACCTCCAGCGAACC+AGG - chr1_4:56488346-56488365 None:intergenic 60.0%
! CCTGGTTCGCTGGAGGTAGT+AGG + chr1_4:56488343-56488362 Msa0171760:intron 60.0%
GCACTGCAACACAGGCACCA+TGG - chr1_4:56489325-56489344 None:intergenic 60.0%
CAAGGGATGTTAGGACGGGC+TGG - chr1_4:56489425-56489444 None:intergenic 60.0%
! TGTGGTGGAGATGTGGTGGC+TGG + chr1_4:56489981-56490000 Msa0171760:CDS 60.0%
GTGGTGTAAGTGCGCCTCTG+CGG + chr1_4:56492065-56492084 Msa0171760:three_prime_UTR 60.0%
TGGTGTAAGTGCGCCTCTGC+GGG + chr1_4:56492066-56492085 Msa0171760:three_prime_UTR 60.0%
CAACACTGTCAAGCCCGCAG+AGG - chr1_4:56492082-56492101 None:intergenic 60.0%
CTCTGCGGGCTTGACAGTGT+TGG + chr1_4:56492080-56492099 Msa0171760:three_prime_UTR 60.0%
! AGGTGATGGCTGGTGCCTTG+TGG + chr1_4:56492401-56492420 Msa0171760:three_prime_UTR 60.0%
ATGGCTGGTGCCTTGTGGAG+AGG + chr1_4:56492406-56492425 Msa0171760:three_prime_UTR 60.0%
TCTTGACCCGTGCTACCGCA+CGG + chr1_4:56493418-56493437 Msa0171760:three_prime_UTR 60.0%
AAAGACCCGTGCGGTAGCAC+GGG - chr1_4:56493427-56493446 None:intergenic 60.0%
GAAAGACCCGTGCGGTAGCA+CGG - chr1_4:56493428-56493447 None:intergenic 60.0%
GAACGGGACAGAGAGGGTCG+AGG + chr1_4:56486628-56486647 Msa0171760:five_prime_UTR 65.0%
GACAGAGAGGGTCGAGGGAG+AGG + chr1_4:56486634-56486653 Msa0171760:five_prime_UTR 65.0%
GAGCATGCGGTGGGAACAGG+AGG + chr1_4:56488066-56488085 Msa0171760:intron 65.0%
!! CGCGTTGGCGTTTGGTGCCA+TGG + chr1_4:56490016-56490035 Msa0171760:CDS 65.0%
CTTGACCCGTGCTACCGCAC+GGG + chr1_4:56493419-56493438 Msa0171760:three_prime_UTR 65.0%
!! GGGCTGGTCCCACCTCTTCC+TGG - chr1_4:56489409-56489428 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 56486596 56493520 56486596 ID=Msa0171760;Name=Msa0171760
chr1_4 mRNA 56486596 56493520 56486596 ID=Msa0171760-mRNA-1;Parent=Msa0171760;Name=Msa0171760-mRNA-1;_AED=0.18;_eAED=0.18;_QI=248|0.81|0.83|1|0.54|0.58|12|1124|307
chr1_4 exon 56486596 56486883 56486596 ID=Msa0171760-mRNA-1:exon:17092;Parent=Msa0171760-mRNA-1
chr1_4 exon 56487339 56487397 56487339 ID=Msa0171760-mRNA-1:exon:17093;Parent=Msa0171760-mRNA-1
chr1_4 exon 56487662 56487755 56487662 ID=Msa0171760-mRNA-1:exon:17094;Parent=Msa0171760-mRNA-1
chr1_4 exon 56488203 56488357 56488203 ID=Msa0171760-mRNA-1:exon:17095;Parent=Msa0171760-mRNA-1
chr1_4 exon 56488542 56488640 56488542 ID=Msa0171760-mRNA-1:exon:17096;Parent=Msa0171760-mRNA-1
chr1_4 exon 56489318 56489428 56489318 ID=Msa0171760-mRNA-1:exon:17097;Parent=Msa0171760-mRNA-1
chr1_4 exon 56489840 56490247 56489840 ID=Msa0171760-mRNA-1:exon:17098;Parent=Msa0171760-mRNA-1
chr1_4 exon 56491373 56491431 56491373 ID=Msa0171760-mRNA-1:exon:17099;Parent=Msa0171760-mRNA-1
chr1_4 exon 56491868 56491973 56491868 ID=Msa0171760-mRNA-1:exon:17100;Parent=Msa0171760-mRNA-1
chr1_4 exon 56492065 56492158 56492065 ID=Msa0171760-mRNA-1:exon:17101;Parent=Msa0171760-mRNA-1
chr1_4 exon 56492313 56492546 56492313 ID=Msa0171760-mRNA-1:exon:17102;Parent=Msa0171760-mRNA-1
chr1_4 exon 56492932 56493520 56492932 ID=Msa0171760-mRNA-1:exon:17103;Parent=Msa0171760-mRNA-1
chr1_4 five_prime_UTR 56486596 56486843 56486596 ID=Msa0171760-mRNA-1:five_prime_utr;Parent=Msa0171760-mRNA-1
chr1_4 CDS 56486844 56486883 56486844 ID=Msa0171760-mRNA-1:cds;Parent=Msa0171760-mRNA-1
chr1_4 CDS 56487339 56487397 56487339 ID=Msa0171760-mRNA-1:cds;Parent=Msa0171760-mRNA-1
chr1_4 CDS 56487662 56487755 56487662 ID=Msa0171760-mRNA-1:cds;Parent=Msa0171760-mRNA-1
chr1_4 CDS 56488203 56488357 56488203 ID=Msa0171760-mRNA-1:cds;Parent=Msa0171760-mRNA-1
chr1_4 CDS 56488542 56488640 56488542 ID=Msa0171760-mRNA-1:cds;Parent=Msa0171760-mRNA-1
chr1_4 CDS 56489318 56489428 56489318 ID=Msa0171760-mRNA-1:cds;Parent=Msa0171760-mRNA-1
chr1_4 CDS 56489840 56490205 56489840 ID=Msa0171760-mRNA-1:cds;Parent=Msa0171760-mRNA-1
chr1_4 three_prime_UTR 56490206 56490247 56490206 ID=Msa0171760-mRNA-1:three_prime_utr;Parent=Msa0171760-mRNA-1
chr1_4 three_prime_UTR 56491373 56491431 56491373 ID=Msa0171760-mRNA-1:three_prime_utr;Parent=Msa0171760-mRNA-1
chr1_4 three_prime_UTR 56491868 56491973 56491868 ID=Msa0171760-mRNA-1:three_prime_utr;Parent=Msa0171760-mRNA-1
chr1_4 three_prime_UTR 56492065 56492158 56492065 ID=Msa0171760-mRNA-1:three_prime_utr;Parent=Msa0171760-mRNA-1
chr1_4 three_prime_UTR 56492313 56492546 56492313 ID=Msa0171760-mRNA-1:three_prime_utr;Parent=Msa0171760-mRNA-1
chr1_4 three_prime_UTR 56492932 56493520 56492932 ID=Msa0171760-mRNA-1:three_prime_utr;Parent=Msa0171760-mRNA-1
Gene Sequence

>Msa0171760

ATGAGAGTTGAAGATGGTGAAAATTTTGCAGAGATTGATGATGTGTGCAAAGGAAGAGATTGTGAGGTGCAGTTTCACTTGATCAATGAGGCTTATGATGGTGTGGTTTATTGGCAACCTCCAAAGCAAGCATTGGACAAGGAGAAAGAGCTTGTGTATGAGCCTTCTATTAGTCGTTATGGTAATGATGAAGGTATCCCGCTTACACCTCTGATAACATGGATAAATGCTGTGCTTCCTAACTTTAATATGCCCTTAGAAATTTCTGAGGAAGAATTAAGGGCATGCTTGAGGGATAGATCCGTATTATGTACCATTTTGGACAAACTGGTTCCTGGTTCGCTGGAGGGAAGTGGTTCTTCGAATGAACCGATGAGTGTCGAAAGGTTTTTGGTGGCCTTGGATGAACTGGGATTATCGGGATTTGAATTGTCAGAGCTGGAGCAGGGATCCATGGTGCCTGTGTTGCAGTGCCTTGAGAATCTGAAAGCTCGCTTTGTATATAATGCTGCACGAGAAAATATCCGAGGTTGTTCCAGGAAGAGGTGGGACCAGCCCGTTGCTGGTTGCGAGGAAAGTGTTGAGGCGTTTAAGAATGTTTCTGGTGTTGGAGTGCTGGCGGATCTACTAGATCTTGCTACTGGTTCGAGTATGAGGACGAGGGAAAATGCAGTGTCGGCATTGCTTAATGTTGTGAGATGTGGTGGAGATGTGGTGGCTGGAGATGTAAGAGACGCGTTGGCGTTTGGTGCCATGGATGGAATTGCTGATGTTAAAGATAAAGGAAGTGTTAAGGGGCAGAGTAAGGCTTTTGAGTTGATGAGAGTGATGGTTGGTGATGTTCGTAATCATGGTAATGTCGTTTTGAATAGTGGTTCGTCGTTCGGTTCTTTGATGAATGAAGATAGTGGTACGTCGTTTTGA
Protein sequence

>Msa0171760

MRVEDGENFAEIDDVCKGRDCEVQFHLINEAYDGVVYWQPPKQALDKEKELVYEPSISRYGNDEGIPLTPLITWINAVLPNFNMPLEISEEELRACLRDRSVLCTILDKLVPGSLEGSGSSNEPMSVERFLVALDELGLSGFELSELEQGSMVPVLQCLENLKARFVYNAARENIRGCSRKRWDQPVAGCEESVEAFKNVSGVGVLADLLDLATGSSMRTRENAVSALLNVVRCGGDVVAGDVRDALAFGAMDGIADVKDKGSVKGQSKAFELMRVMVGDVRNHGNVVLNSGSSFGSLMNEDSGTSF*