AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1036840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1036840 MtrunA17_Chr7g0261411 98.625 291 4 0 1 291 1 291 0.0 602
Msa1036840 MtrunA17_Chr1g0183741 76.792 293 48 8 1 291 1 275 3.55e-158 441
Msa1036840 MtrunA17_Chr2g0312321 62.893 159 50 3 6 159 7 161 1.89e-69 217
Msa1036840 MtrunA17_Chr3g0139331 43.426 251 124 5 9 246 10 255 4.49e-63 202
Msa1036840 MtrunA17_Chr2g0316971 56.250 160 64 1 8 161 21 180 1.42e-59 194
Msa1036840 MtrunA17_Chr1g0147421 47.549 204 99 3 2 197 19 222 3.83e-59 192
Msa1036840 MtrunA17_Chr4g0060931 55.844 154 60 3 10 157 17 168 3.11e-57 187
Msa1036840 MtrunA17_Chr6g0484441 56.000 150 62 2 10 157 5 152 6.24e-56 183
Msa1036840 MtrunA17_Chr6g0453451 47.236 199 81 5 10 196 20 206 7.40e-56 183
Msa1036840 MtrunA17_Chr5g0405211 55.195 154 62 4 8 156 6 157 1.29e-55 183
Msa1036840 MtrunA17_Chr7g0253011 42.593 270 113 9 10 240 17 283 1.51e-55 184
Msa1036840 MtrunA17_Chr3g0091921 46.890 209 99 6 10 211 16 219 1.76e-55 181
Msa1036840 MtrunA17_Chr4g0018391 43.379 219 110 5 8 216 5 219 1.29e-54 180
Msa1036840 MtrunA17_Chr6g0461661 53.503 157 67 2 10 160 18 174 3.41e-54 180
Msa1036840 MtrunA17_Chr1g0200561 52.866 157 67 4 5 156 14 168 4.04e-54 179
Msa1036840 MtrunA17_Chr4g0056541 41.597 238 109 8 8 231 5 226 9.45e-54 179
Msa1036840 MtrunA17_Chr4g0017921 48.649 185 77 4 8 176 6 188 1.91e-53 177
Msa1036840 MtrunA17_Chr8g0372121 49.143 175 79 5 8 174 4 176 2.74e-53 176
Msa1036840 MtrunA17_Chr5g0398971 52.564 156 65 4 8 156 5 158 5.87e-53 176
Msa1036840 MtrunA17_Chr2g0309891 50.588 170 75 3 9 171 5 172 1.64e-52 175
Msa1036840 MtrunA17_Chr6g0481091 52.903 155 65 3 8 156 4 156 9.26e-52 170
Msa1036840 MtrunA17_Chr2g0318101 50.307 163 66 2 10 157 15 177 1.53e-51 172
Msa1036840 MtrunA17_Chr3g0144271 54.483 145 62 2 10 153 23 164 2.07e-51 174
Msa1036840 MtrunA17_Chr7g0252971 48.780 164 69 3 10 158 8 171 2.38e-51 172
Msa1036840 MtrunA17_Chr4g0047841 46.369 179 69 2 10 161 15 193 4.54e-51 171
Msa1036840 MtrunA17_Chr3g0109821 54.777 157 62 3 8 157 4 158 3.08e-50 176
Msa1036840 MtrunA17_Chr4g0042561 44.886 176 86 4 8 175 7 179 3.85e-50 166
Msa1036840 MtrunA17_Chr8g0384721 46.667 180 84 3 10 181 7 182 1.90e-49 165
Msa1036840 MtrunA17_Chr7g0217721 38.372 258 122 7 13 237 22 275 2.71e-49 167
Msa1036840 MtrunA17_Chr2g0309331 51.634 153 68 4 9 156 9 160 4.95e-49 166
Msa1036840 MtrunA17_Chr5g0433781 55.769 156 61 4 8 157 4 157 5.54e-49 172
Msa1036840 MtrunA17_Chr3g0130731 48.824 170 74 4 10 170 7 172 9.83e-49 164
Msa1036840 MtrunA17_Chr3g0124761 49.091 165 74 2 10 167 7 168 1.04e-48 163
Msa1036840 MtrunA17_Chr7g0214071 50.000 156 73 2 10 163 15 167 1.16e-48 162
Msa1036840 MtrunA17_Chr7g0263931 35.739 291 137 7 10 276 11 275 2.23e-48 164
Msa1036840 MtrunA17_Chr5g0400461 49.123 171 79 4 7 169 3 173 4.37e-48 163
Msa1036840 MtrunA17_Chr5g0417791 46.452 155 73 2 10 156 3 155 4.96e-48 160
Msa1036840 MtrunA17_Chr2g0326361 43.000 200 101 3 9 195 13 212 1.04e-47 162
Msa1036840 MtrunA17_Chr8g0346001 34.050 279 152 6 8 263 13 282 1.19e-46 162
Msa1036840 MtrunA17_Chr2g0318081 48.171 164 75 3 1 156 3 164 2.93e-46 159
Msa1036840 MtrunA17_Chr8g0359921 48.701 154 71 2 9 156 13 164 6.48e-45 155
Msa1036840 MtrunA17_Chr7g0217711 52.756 127 58 1 12 138 21 145 2.16e-44 149
Msa1036840 MtrunA17_Chr8g0361731 40.828 169 87 1 2 157 6 174 9.01e-44 153
Msa1036840 MtrunA17_Chr3g0092671 50.000 152 68 4 12 157 7 156 2.44e-43 155
Msa1036840 MtrunA17_Chr4g0054791 48.148 162 73 4 7 159 3 162 1.71e-42 148
Msa1036840 MtrunA17_Chr5g0417001 41.772 158 80 1 12 157 16 173 3.97e-42 149
Msa1036840 MtrunA17_Chr1g0197351 47.500 160 70 3 9 156 41 198 4.46e-42 150
Msa1036840 MtrunA17_Chr6g0453131 42.857 161 78 3 10 157 15 174 3.48e-41 146
Msa1036840 MtrunA17_Chr1g0197361 50.000 152 68 5 12 157 10 159 1.76e-40 148
Msa1036840 MtrunA17_Chr3g0128111 41.622 185 98 4 13 189 45 227 1.06e-39 139
Msa1036840 MtrunA17_Chr4g0076731 46.104 154 78 3 12 162 56 207 1.59e-39 143
Msa1036840 MtrunA17_Chr3g0130101 45.695 151 74 3 12 156 9 157 3.90e-39 140
Msa1036840 MtrunA17_Chr5g0428991 48.077 156 73 3 10 159 25 178 8.24e-39 144
Msa1036840 MtrunA17_Chr3g0128151 46.497 157 76 3 9 159 21 175 1.78e-38 142
Msa1036840 MtrunA17_Chr8g0364791 43.137 153 79 3 10 156 6 156 2.68e-37 137
Msa1036840 MtrunA17_Chr5g0442771 40.881 159 80 2 12 156 20 178 5.62e-37 133
Msa1036840 MtrunA17_Chr4g0038751 42.953 149 79 3 12 157 17 162 1.13e-36 132
Msa1036840 MtrunA17_Chr1g0201021 45.395 152 75 3 12 157 21 170 2.77e-36 136
Msa1036840 MtrunA17_Chr8g0345671 46.259 147 74 4 10 153 11 155 3.12e-36 133
Msa1036840 MtrunA17_Chr2g0311651 42.331 163 76 4 12 156 24 186 6.42e-35 128
Msa1036840 MtrunA17_Chr2g0311661 40.244 164 80 3 12 157 23 186 1.16e-34 127
Msa1036840 MtrunA17_Chr8g0384201 41.176 153 82 3 10 156 6 156 1.43e-34 130
Msa1036840 MtrunA17_Chr8g0385991 41.290 155 80 3 8 153 12 164 1.92e-34 124
Msa1036840 MtrunA17_Chr8g0345691 43.537 147 78 4 10 153 12 156 1.99e-33 126
Msa1036840 MtrunA17_Chr3g0131911 41.718 163 81 3 8 158 12 172 5.62e-33 121
Msa1036840 MtrunA17_Chr3g0113001 38.571 210 103 10 43 237 1 199 4.89e-32 120
Msa1036840 MtrunA17_Chr2g0321631 41.401 157 78 5 11 154 5 160 1.79e-31 117
Msa1036840 MtrunA17_Chr4g0050701 34.831 178 96 3 10 176 11 179 2.31e-31 115
Msa1036840 MtrunA17_Chr4g0026141 38.365 159 81 5 10 154 5 160 2.06e-30 115
Msa1036840 MtrunA17_Chr7g0266701 35.366 164 90 5 10 158 4 166 2.22e-28 109
Msa1036840 MtrunA17_Chr8g0345711 42.857 133 72 3 6 135 8 139 1.53e-27 105
Msa1036840 MtrunA17_Chr8g0345701 38.514 148 71 5 5 135 2 146 2.42e-26 102
Msa1036840 MtrunA17_Chr8g0345721 36.095 169 70 4 4 135 24 191 3.23e-26 102
Msa1036840 MtrunA17_Chr7g0243371 53.086 81 38 0 64 144 18 98 1.10e-24 95.9
Msa1036840 MtrunA17_Chr2g0321741 40.411 146 78 5 30 171 12 152 2.31e-24 100
Msa1036840 MtrunA17_Chr3g0113031 37.778 180 90 7 73 237 3 175 2.48e-24 99.0
Msa1036840 MtrunA17_Chr8g0345731 40.458 131 73 3 10 135 24 154 1.14e-23 94.7
Msa1036840 MtrunA17_Chr8g0384351 37.500 152 77 5 8 159 8 141 8.61e-22 90.1
Msa1036840 MtrunA17_Chr8g0345741 33.962 159 96 4 21 176 2 154 2.75e-21 88.2
Msa1036840 MtrunA17_Chr3g0130321 29.545 176 82 6 8 158 5 163 1.54e-16 76.6
Msa1036840 MtrunA17_Chr7g0251671 33.553 152 85 5 1 145 1 143 1.61e-16 75.5
Msa1036840 MtrunA17_Chr7g0251651 30.968 155 86 6 7 158 15 151 1.69e-16 76.3
Msa1036840 MtrunA17_Chr7g0251661 29.932 147 97 4 1 145 1 143 4.07e-14 68.6
Msa1036840 MtrunA17_Chr2g0282871 29.480 173 103 6 9 165 52 221 6.67e-13 67.8
Msa1036840 MtrunA17_Chr3g0113011 50.000 48 24 0 9 56 18 65 2.82e-12 61.2
Msa1036840 MtrunA17_Chr5g0422431 28.994 169 96 7 9 159 57 219 1.95e-11 64.3
Msa1036840 MtrunA17_Chr4g0046431 28.977 176 106 6 9 168 67 239 2.14e-11 63.5
Msa1036840 MtrunA17_Chr1g0168571 29.861 144 90 6 18 152 13 154 8.58e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1036840 AT4G28530.1 73.143 175 31 2 1 159 1 175 3.21e-93 280
Msa1036840 AT1G56010.2 47.009 234 100 5 6 231 15 232 1.24e-64 206
Msa1036840 AT3G12977.1 57.051 156 60 3 6 156 14 167 1.72e-61 196
Msa1036840 AT1G76420.1 56.688 157 65 1 9 162 21 177 2.66e-61 197
Msa1036840 AT2G24430.2 54.902 153 66 1 9 158 15 167 2.46e-60 194
Msa1036840 AT2G24430.1 54.902 153 66 1 9 158 15 167 2.46e-60 194
Msa1036840 AT4G28530.2 54.286 175 27 3 1 159 1 138 1.19e-58 190
Msa1036840 AT5G53950.1 55.844 154 62 1 10 157 17 170 3.70e-58 191
Msa1036840 AT3G18400.1 56.291 151 61 3 10 157 5 153 4.50e-58 189
Msa1036840 AT5G61430.1 57.143 154 58 3 10 157 16 167 4.64e-58 189
Msa1036840 AT5G07680.2 56.494 154 59 3 10 157 3 154 6.19e-58 188
Msa1036840 AT5G07680.1 56.494 154 59 3 10 157 17 168 9.47e-58 188
Msa1036840 AT4G36160.1 48.718 195 90 6 5 194 5 194 1.70e-56 186
Msa1036840 AT4G36160.3 48.718 195 90 6 5 194 5 194 1.70e-56 186
Msa1036840 AT4G36160.2 48.718 195 90 6 5 194 9 198 2.16e-56 186
Msa1036840 AT2G18060.3 46.875 192 92 5 8 194 7 193 1.18e-55 184
Msa1036840 AT2G18060.1 46.875 192 92 5 8 194 7 193 1.18e-55 184
Msa1036840 AT3G15170.1 50.617 162 74 1 10 165 20 181 2.29e-55 181
Msa1036840 AT5G39610.1 55.556 153 60 3 10 156 20 170 2.65e-55 181
Msa1036840 AT1G71930.2 41.975 243 111 6 6 243 5 222 4.62e-55 181
Msa1036840 AT1G71930.1 41.975 243 111 6 6 243 5 222 4.62e-55 181
Msa1036840 AT5G18270.1 55.556 153 61 3 10 156 21 172 1.42e-54 180
Msa1036840 AT5G18270.2 55.556 153 61 3 10 156 21 172 1.73e-54 180
Msa1036840 AT3G29035.1 48.936 188 74 4 10 191 24 195 3.15e-54 179
Msa1036840 AT1G12260.2 53.247 154 65 3 8 156 5 156 6.24e-54 179
Msa1036840 AT3G04060.1 54.902 153 62 3 10 156 20 171 7.44e-54 178
Msa1036840 AT1G12260.1 53.247 154 65 3 8 156 5 156 8.90e-54 180
Msa1036840 AT4G10350.1 46.535 202 82 6 8 185 7 206 9.04e-54 178
Msa1036840 AT5G66300.1 52.830 159 67 4 4 156 6 162 1.36e-53 176
Msa1036840 AT3G04070.2 47.368 171 76 2 1 157 1 171 3.78e-53 177
Msa1036840 AT1G33280.1 49.727 183 81 5 8 181 6 186 4.68e-53 176
Msa1036840 AT1G62700.1 52.597 154 66 3 8 156 5 156 1.34e-52 177
Msa1036840 AT1G62700.2 52.597 154 66 3 8 156 5 156 1.34e-52 177
Msa1036840 AT5G62380.2 52.147 163 71 4 8 165 5 165 1.69e-51 172
Msa1036840 AT5G62380.1 52.147 163 71 4 8 165 5 165 1.69e-51 172
Msa1036840 AT3G03200.1 53.846 156 63 3 8 156 4 157 2.53e-51 176
Msa1036840 AT3G17730.1 52.258 155 66 3 8 156 4 156 3.87e-51 169
Msa1036840 AT5G17260.1 52.564 156 65 3 8 156 4 157 6.97e-51 174
Msa1036840 AT3G04070.1 43.316 187 76 2 1 157 1 187 1.03e-50 171
Msa1036840 AT1G54330.1 55.629 151 62 3 9 156 5 153 5.19e-50 167
Msa1036840 AT3G15510.1 41.117 197 100 3 14 195 21 216 4.47e-49 167
Msa1036840 AT1G79580.3 51.974 152 68 3 9 156 16 166 1.11e-48 166
Msa1036840 AT1G79580.5 51.974 152 68 3 9 156 16 166 1.11e-48 166
Msa1036840 AT1G79580.4 51.974 152 68 3 9 156 16 166 1.11e-48 166
Msa1036840 AT1G79580.2 51.974 152 68 3 9 156 16 166 1.11e-48 166
Msa1036840 AT1G79580.1 51.974 152 68 3 9 156 16 166 1.11e-48 166
Msa1036840 AT1G61110.1 47.486 179 74 4 1 160 4 181 1.56e-48 164
Msa1036840 AT1G01720.1 43.590 195 97 3 10 196 7 196 2.98e-48 162
Msa1036840 AT1G65910.1 53.125 160 67 3 8 161 4 161 3.07e-48 170
Msa1036840 AT1G32770.1 45.181 166 72 3 8 156 14 177 5.96e-48 164
Msa1036840 AT5G08790.1 43.750 192 96 2 10 192 7 195 8.61e-48 161
Msa1036840 AT3G61910.1 41.463 205 96 4 8 190 9 211 4.45e-47 160
Msa1036840 AT1G69490.1 46.497 157 74 2 8 156 7 161 5.81e-47 159
Msa1036840 AT2G46770.1 44.379 169 72 3 8 156 14 180 6.18e-47 161
Msa1036840 AT1G52890.1 46.199 171 86 2 9 175 13 181 6.37e-47 160
Msa1036840 AT3G15500.1 48.780 164 74 3 1 156 1 162 1.09e-46 159
Msa1036840 AT4G27410.2 48.485 165 75 4 1 157 1 163 1.09e-46 159
Msa1036840 AT5G46590.1 41.784 213 109 5 8 213 4 208 1.82e-46 158
Msa1036840 AT5G63790.1 49.359 156 67 2 10 156 50 202 2.53e-46 158
Msa1036840 AT5G63790.2 49.359 156 67 2 10 156 60 212 3.07e-46 158
Msa1036840 AT3G10480.1 50.318 157 69 3 7 156 24 178 3.99e-46 161
Msa1036840 AT4G35580.1 45.050 202 101 4 9 202 8 207 4.34e-46 162
Msa1036840 AT4G35580.2 45.050 202 101 4 9 202 8 207 4.99e-46 162
Msa1036840 AT4G35580.3 45.050 202 101 4 9 202 8 207 5.40e-46 162
Msa1036840 AT3G10490.1 47.531 162 76 3 2 156 19 178 1.06e-45 154
Msa1036840 AT1G77450.1 48.428 159 70 3 7 156 5 160 1.14e-45 155
Msa1036840 AT5G04410.1 49.677 155 70 3 9 157 8 160 1.48e-45 162
Msa1036840 AT1G33060.1 43.842 203 105 4 9 205 23 222 4.08e-45 162
Msa1036840 AT1G33060.2 43.842 203 105 4 9 205 23 222 4.27e-45 162
Msa1036840 AT3G10480.2 51.282 156 68 4 7 156 24 177 5.60e-45 158
Msa1036840 AT3G10490.2 47.531 162 76 3 2 156 19 178 1.36e-44 157
Msa1036840 AT5G13180.1 35.484 248 138 4 10 253 14 243 3.80e-44 151
Msa1036840 AT3G10500.1 49.032 155 71 3 9 157 8 160 8.50e-44 157
Msa1036840 AT1G56010.1 46.961 181 73 4 58 231 1 165 1.67e-43 149
Msa1036840 AT5G39820.1 35.169 236 109 4 12 208 22 252 2.08e-43 151
Msa1036840 AT5G46590.2 40.385 208 108 4 8 213 4 197 2.98e-43 149
Msa1036840 AT4G27410.3 45.055 182 73 6 1 157 1 180 4.71e-43 150
Msa1036840 AT4G17980.1 48.428 159 70 3 8 156 4 160 5.75e-43 148
Msa1036840 AT4G17980.2 47.826 161 72 3 8 158 4 162 7.38e-43 149
Msa1036840 AT1G32510.1 46.667 165 76 3 6 158 2 166 1.03e-42 148
Msa1036840 AT2G33480.2 46.795 156 76 3 10 163 15 165 2.04e-41 144
Msa1036840 AT2G33480.1 46.203 158 76 3 10 163 15 167 4.44e-41 143
Msa1036840 AT2G02450.1 41.436 181 85 4 12 174 53 230 5.58e-41 146
Msa1036840 AT2G02450.2 41.436 181 85 4 12 174 53 230 9.94e-41 146
Msa1036840 AT1G26870.1 40.741 162 81 2 10 157 16 176 1.11e-40 146
Msa1036840 AT3G12977.2 60.748 107 35 3 55 156 10 114 1.99e-40 140
Msa1036840 AT2G43000.1 43.312 157 80 3 12 162 20 173 3.01e-40 141
Msa1036840 AT5G24590.2 47.742 155 74 3 8 156 11 164 4.64e-40 145
Msa1036840 AT3G10480.3 42.105 190 68 4 7 156 24 211 6.62e-40 146
Msa1036840 AT3G49530.2 44.231 156 80 3 9 158 12 166 5.12e-39 141
Msa1036840 AT3G49530.1 44.805 154 78 3 9 156 12 164 1.61e-38 141
Msa1036840 AT2G27300.1 46.259 147 73 3 8 153 12 153 1.64e-38 138
Msa1036840 AT1G52880.1 43.860 171 74 4 14 169 21 184 2.93e-38 137
Msa1036840 AT5G09330.5 44.444 153 77 3 10 156 6 156 1.08e-37 139
Msa1036840 AT5G09330.2 44.444 153 77 3 10 156 6 156 1.08e-37 139
Msa1036840 AT5G09330.4 44.444 153 77 3 10 156 6 156 1.08e-37 139
Msa1036840 AT5G09330.3 44.444 153 77 3 10 156 6 156 1.08e-37 139
Msa1036840 AT5G09330.1 44.444 153 77 3 10 156 6 156 1.08e-37 139
Msa1036840 AT2G17040.1 42.857 147 82 2 12 157 8 153 8.77e-37 132
Msa1036840 AT1G34180.3 41.401 157 84 3 7 157 13 167 9.28e-37 136
Msa1036840 AT5G61430.2 59.434 106 35 3 58 157 1 104 1.01e-36 132
Msa1036840 AT1G34180.1 42.105 152 80 3 12 157 18 167 3.79e-36 136
Msa1036840 AT4G10350.2 46.452 155 57 6 55 185 7 159 8.19e-36 130
Msa1036840 AT1G34190.1 42.105 152 80 3 12 157 18 167 1.43e-35 134
Msa1036840 AT1G34180.4 38.462 169 84 3 7 157 13 179 1.25e-34 130
Msa1036840 AT1G34180.2 39.024 164 80 3 12 157 18 179 5.19e-34 130
Msa1036840 AT3G12910.1 43.636 165 73 5 12 157 23 186 9.75e-34 125
Msa1036840 AT1G32870.2 44.937 158 75 4 8 157 8 161 1.80e-33 128
Msa1036840 AT1G32870.1 44.937 158 75 4 8 157 8 161 1.95e-33 128
Msa1036840 AT5G64060.1 39.869 153 84 3 10 156 6 156 2.88e-33 125
Msa1036840 AT1G32870.3 44.937 158 75 4 8 157 44 197 3.30e-33 128
Msa1036840 AT5G04395.1 42.384 151 73 2 1 137 19 169 3.90e-32 117
Msa1036840 AT5G22290.1 38.012 171 95 5 4 168 10 175 6.33e-32 121
Msa1036840 AT3G44290.2 40.559 143 79 3 12 153 16 153 1.56e-30 115
Msa1036840 AT3G44290.1 40.559 143 79 3 12 153 16 153 7.32e-30 115
Msa1036840 AT3G44350.2 35.648 216 116 8 6 205 1 209 1.42e-29 112
Msa1036840 AT4G01550.1 36.598 194 104 6 13 200 7 187 4.37e-29 115
Msa1036840 AT5G64530.1 32.418 182 91 4 10 171 3 172 3.13e-26 102
Msa1036840 AT3G44350.1 41.912 136 73 3 6 136 1 135 3.61e-26 101
Msa1036840 AT2G33480.3 48.077 104 48 2 64 163 9 110 1.05e-25 101
Msa1036840 AT4G01520.1 37.013 154 89 6 11 158 5 156 3.68e-24 99.8
Msa1036840 AT5G22380.1 37.013 154 84 5 13 154 8 160 4.55e-24 97.8
Msa1036840 AT4G01540.3 36.842 152 88 6 13 158 7 156 5.03e-23 98.2
Msa1036840 AT4G01540.4 36.842 152 88 6 13 158 7 156 5.08e-23 97.8
Msa1036840 AT4G01540.2 36.842 152 88 6 13 158 7 156 5.74e-23 98.2
Msa1036840 AT4G01540.1 36.842 152 88 6 13 158 7 156 5.87e-23 98.6
Msa1036840 AT1G02230.1 36.364 154 90 5 11 159 4 154 1.23e-22 96.7
Msa1036840 AT5G64530.2 36.719 128 69 2 10 137 3 118 1.71e-22 91.7
Msa1036840 AT2G18060.2 56.944 72 27 3 87 156 1 70 3.60e-22 94.0
Msa1036840 AT3G04420.2 33.333 150 93 4 11 156 4 150 5.20e-21 90.9
Msa1036840 AT3G04420.1 33.333 150 93 4 11 156 4 150 1.27e-20 90.5
Msa1036840 AT3G10490.4 53.165 79 30 2 83 156 2 78 8.41e-19 85.5
Msa1036840 AT3G10490.3 53.165 79 30 2 83 156 2 78 8.41e-19 85.5
Msa1036840 AT1G01010.1 33.750 160 91 6 13 161 6 161 2.67e-18 84.7
Msa1036840 AT2G43000.2 42.857 98 47 3 71 162 1 95 1.04e-17 79.7
Msa1036840 AT1G02250.1 32.432 148 92 4 11 153 4 148 2.53e-17 81.6
Msa1036840 AT5G50820.1 37.226 137 62 5 10 137 17 138 1.76e-16 76.3
Msa1036840 AT1G02220.1 31.008 129 80 4 11 135 4 127 3.34e-16 78.6
Msa1036840 AT3G04430.1 35.507 138 75 5 16 141 6 141 3.28e-15 73.2
Msa1036840 AT3G56530.1 27.815 151 102 4 9 154 51 199 2.49e-14 72.4
Msa1036840 AT5G14000.2 30.827 133 86 3 7 137 12 140 5.13e-13 65.9
Msa1036840 AT5G14000.1 25.581 172 121 4 7 175 12 179 2.07e-12 65.5
Msa1036840 AT1G28470.1 31.325 166 95 7 9 158 76 238 3.19e-12 66.2
Msa1036840 AT3G55210.1 26.994 163 103 4 6 154 7 167 3.37e-12 65.9
Msa1036840 AT5G22290.2 42.500 80 41 3 89 168 2 76 5.56e-12 64.7
Msa1036840 AT4G29230.2 29.319 191 101 10 10 172 47 231 3.44e-11 63.9
Msa1036840 AT4G29230.1 29.319 191 101 10 10 172 48 232 3.51e-11 63.9
Msa1036840 AT4G29230.3 29.016 193 103 10 8 172 46 232 5.85e-11 63.2

Find 78 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAACCGTGCTATTATTATT+TGG 0.209937 7_1:-73309980 None:intergenic
GAGAGAGTTAATCACTTAAT+TGG 0.231668 7_1:-73305917 None:intergenic
CTGAAGCCACACCATCTTCT+AGG 0.277699 7_1:-73310069 None:intergenic
CACAAATGAGGAAGTTCTTA+AGG 0.329369 7_1:+73306181 Msa1036840:CDS
ACAAACAGAGCAACTATATC+TGG 0.343800 7_1:+73308616 Msa1036840:CDS
ATGGTATTTCTTTAGCTTCC+GGG 0.345420 7_1:+73308567 Msa1036840:CDS
GAGCAACTATATCTGGATAT+TGG 0.349161 7_1:+73308623 Msa1036840:CDS
GCTCCAAATGGTATCAAAAC+AGG 0.356435 7_1:+73308736 Msa1036840:CDS
TCATCATGGAAGAATTGTTT+TGG 0.356600 7_1:-73309928 None:intergenic
TGTGAACCATGGCAGCTTCC+AGG 0.356905 7_1:+73306233 Msa1036840:CDS
ATTCTTGTGGAACATGGATT+TGG 0.363780 7_1:+73310036 Msa1036840:CDS
TCTGGATATTGGAAAGCAAC+TGG 0.367759 7_1:+73308634 Msa1036840:CDS
GAGATGATGACATCAAAGTT+AGG 0.374943 7_1:-73309817 None:intergenic
CCTACAACCTCTTGTGTGAT+TGG 0.380585 7_1:-73308679 None:intergenic
TTATCCAAGTGATGAGGAAT+TGG 0.381621 7_1:+73306133 Msa1036840:CDS
GAATTGTTGTGTGTTGAGTT+TGG 0.385310 7_1:-73309771 None:intergenic
TCCAAAGGTGATGATGGATA+TGG 0.397088 7_1:+73310013 Msa1036840:CDS
AATGGTATTTCTTTAGCTTC+CGG 0.397370 7_1:+73308566 Msa1036840:CDS
ATTAATTTCCTTTGAGTCAT+GGG 0.405147 7_1:+73306068 Msa1036840:exon
TATAGCCACTAGGGATGGTT+TGG 0.417138 7_1:-73309850 None:intergenic
GGGATGGTTTGGTAATTTGT+TGG 0.418314 7_1:-73309839 None:intergenic
TAAATCCAGTTGCATATTTG+CGG 0.420581 7_1:-73308591 None:intergenic
TCCATATCCATCATCACCTT+TGG 0.424892 7_1:-73310014 None:intergenic
GAAAGACATTGGTGTTCTAT+AGG 0.425789 7_1:+73308707 Msa1036840:CDS
TTCAAGGAATGAAAGAGAAA+AGG 0.434645 7_1:-73306021 None:intergenic
CTTGGATGCAATAAGATTTG+AGG 0.438363 7_1:+73310093 Msa1036840:CDS
CGGGACCGCAAATATGCAAC+TGG 0.444721 7_1:+73308586 Msa1036840:CDS
TTTGTTGATCACAGGAGGAC+TGG 0.451819 7_1:+73309690 Msa1036840:intron
CAGTTGCATATTTGCGGTCC+CGG 0.454823 7_1:-73308585 None:intergenic
CCAATCACACAAGAGGTTGT+AGG 0.461134 7_1:+73308679 Msa1036840:CDS
ATTAGTTCCAAAGGTGATGA+TGG 0.463352 7_1:+73310007 Msa1036840:CDS
AATTAATTTCCTTTGAGTCA+TGG 0.466324 7_1:+73306067 Msa1036840:exon
CACACCAATTCCTCATCACT+TGG 0.483760 7_1:-73306137 None:intergenic
CTTGGATAAAATCGAAATCC+AGG 0.488698 7_1:-73306119 None:intergenic
TTGTTGATCACAGGAGGACT+GGG 0.497348 7_1:+73309691 Msa1036840:intron
CTCTCAAACCCATGACTCAA+AGG 0.497598 7_1:-73306076 None:intergenic
ACAAATGAGGAAGTTCTTAA+GGG 0.506795 7_1:+73306182 Msa1036840:CDS
CTGTTTCACGAGAATATTGA+AGG 0.508957 7_1:-73309955 None:intergenic
AGATGATGACATCAAAGTTA+GGG 0.519573 7_1:-73309816 None:intergenic
CATAGAAAACTCACCTTAGG+AGG 0.520840 7_1:-73308799 None:intergenic
CAATCACACAAGAGGTTGTA+GGG 0.525240 7_1:+73308680 Msa1036840:CDS
ATAGGAGCTTCACTACCTCC+TGG 0.533290 7_1:+73306101 Msa1036840:CDS
TTTGTATAAAGAAAGAAATG+TGG 0.541065 7_1:-73305963 None:intergenic
CTGGATATTGGAAAGCAACT+GGG 0.545781 7_1:+73308635 Msa1036840:CDS
TAAATGATGAAGTGTTGTCA+TGG 0.547733 7_1:-73309897 None:intergenic
AGATGGTGTGGCTTCAGACT+TGG 0.547899 7_1:+73310075 Msa1036840:CDS
CAAGTTTGTTATAGCCACTA+GGG 0.549346 7_1:-73309859 None:intergenic
GAAGAAAATAGCCTAGAAGA+TGG 0.553895 7_1:+73310058 Msa1036840:CDS
CAAAGCTTAATGCAAATGAA+TGG 0.555762 7_1:+73308548 Msa1036840:CDS
TATATACCTGGAAGCTGCCA+TGG 0.560096 7_1:-73306239 None:intergenic
ATATGGATTCTTGTGGAACA+TGG 0.561084 7_1:+73310030 Msa1036840:CDS
AAATGATGAAGTGTTGTCAT+GGG 0.565391 7_1:-73309896 None:intergenic
TAATGTGTATAATTGAAGCT+TGG 0.566960 7_1:-73305939 None:intergenic
GACACCACACATGCCTCCTA+AGG 0.568201 7_1:+73308786 Msa1036840:CDS
TTTGTTATAGCCACTAGGGA+TGG 0.575379 7_1:-73309855 None:intergenic
GTTACTCAAATTAGTTCCAA+AGG 0.576717 7_1:+73309998 Msa1036840:CDS
GTCATGGGTTTGAGAGACAT+AGG 0.581509 7_1:+73306083 Msa1036840:exon
AGCAACTGGGAAAGATCGTA+TGG 0.583285 7_1:+73308648 Msa1036840:CDS
TCAAGTTTGTTATAGCCACT+AGG 0.587656 7_1:-73309860 None:intergenic
TATAGGAATAGAGCTCCAAA+TGG 0.588028 7_1:+73308724 Msa1036840:CDS
TGAGGTTGATAATGATAATG+TGG 0.588693 7_1:+73310111 Msa1036840:CDS
TGTAGGGATGAGAAAGACAT+TGG 0.588790 7_1:+73308696 Msa1036840:CDS
GATGACATCAAAGTTAGGGA+TGG 0.596756 7_1:-73309812 None:intergenic
CTCCAAATGGTATCAAAACA+GGG 0.600706 7_1:+73308737 Msa1036840:CDS
GACATCAAAGTTAGGGATGG+AGG 0.613884 7_1:-73309809 None:intergenic
ATATTGAAGGAGATTCATCA+TGG 0.619903 7_1:-73309942 None:intergenic
CTCACCTTAGGAGGCATGTG+TGG 0.621337 7_1:-73308790 None:intergenic
AAATAGCCTAGAAGATGGTG+TGG 0.624894 7_1:+73310063 Msa1036840:CDS
GCCATGGTTCACATATGTGA+AGG 0.625702 7_1:-73306223 None:intergenic
ATGATGGATATGGATTCTTG+TGG 0.648298 7_1:+73310023 Msa1036840:CDS
AGATCCAAATAATAATAGCA+CGG 0.654615 7_1:+73309976 Msa1036840:CDS
GTTAGATCCAATCACACAAG+AGG 0.657130 7_1:+73308672 Msa1036840:CDS
AATGATGAAGTGTTGTCATG+GGG 0.659787 7_1:-73309895 None:intergenic
ATGATGAAGTGTTGTCATGG+GGG 0.660202 7_1:-73309894 None:intergenic
ACCTTCACATATGTGAACCA+TGG 0.672346 7_1:+73306222 Msa1036840:CDS
AATTACCAAACCATCCCTAG+TGG 0.692848 7_1:+73309845 Msa1036840:CDS
CAAATGGTATCAAAACAGGG+TGG 0.731036 7_1:+73308740 Msa1036840:CDS
GGATAAAATCGAAATCCAGG+AGG 0.731687 7_1:-73306116 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATATGAAAAAAATACA+GGG - chr7_1:73307493-73307512 None:intergenic 10.0%
!!! TTTTTATATGAAAAAAATAC+AGG - chr7_1:73307494-73307513 None:intergenic 10.0%
!!! TTTAAGATAGATAAAAAAAT+TGG + chr7_1:73307659-73307678 Msa1036840:intron 10.0%
!! TTTCAAATAACAAAATTAAT+TGG + chr7_1:73307979-73307998 Msa1036840:intron 10.0%
!!! AAATAGCTTTTTAATTTTTA+TGG - chr7_1:73308043-73308062 None:intergenic 10.0%
!!! ATCAAAAGTATAAAAATTAA+GGG + chr7_1:73308916-73308935 Msa1036840:intron 10.0%
!!! AGAACTTATTTTATTTAATA+TGG - chr7_1:73309276-73309295 None:intergenic 10.0%
!! ATGTTAAAAAAAAAATCTAA+GGG + chr7_1:73309521-73309540 Msa1036840:intron 10.0%
!!! TTAATAATTTGTTTGATTTC+TGG + chr7_1:73306362-73306381 Msa1036840:intron 15.0%
!! AGAATACAAGAAAAATATAA+AGG + chr7_1:73306694-73306713 Msa1036840:intron 15.0%
!! GAATACAAGAAAAATATAAA+GGG + chr7_1:73306695-73306714 Msa1036840:intron 15.0%
!! CATTCAATAAATAAAGTAAT+AGG + chr7_1:73306765-73306784 Msa1036840:intron 15.0%
!!! ATTGGAATTTTTTTTTTGAA+GGG - chr7_1:73307453-73307472 None:intergenic 15.0%
!! TTTATATGAAAAAAATACAG+GGG - chr7_1:73307492-73307511 None:intergenic 15.0%
!! TCCATAAAAAAAAAATTTGA+AGG + chr7_1:73308007-73308026 Msa1036840:intron 15.0%
!!! TCCTTCAAATTTTTTTTTTA+TGG - chr7_1:73308011-73308030 None:intergenic 15.0%
!! TAAAAAAAAAATTTGAAGGA+AGG + chr7_1:73308011-73308030 Msa1036840:intron 15.0%
!!! TTTGCTACTAATTTTTTTAA+AGG - chr7_1:73308197-73308216 None:intergenic 15.0%
!!! CATCAAAAGTATAAAAATTA+AGG + chr7_1:73308915-73308934 Msa1036840:intron 15.0%
!! CATGTTAAAAAAAAAATCTA+AGG + chr7_1:73309520-73309539 Msa1036840:intron 15.0%
!! TATGACAAATGTAAAATAAA+AGG + chr7_1:73309566-73309585 Msa1036840:intron 15.0%
!!! CACATATATTTTTGTTAATT+AGG + chr7_1:73309660-73309679 Msa1036840:intron 15.0%
!! TTTGTATAAAGAAAGAAATG+TGG - chr7_1:73305966-73305985 None:intergenic 20.0%
!!! GAAATTTAATGAAGATTTTG+TGG - chr7_1:73306002-73306021 None:intergenic 20.0%
!! AATTATCTGAATTATCTTCA+TGG + chr7_1:73306318-73306337 Msa1036840:intron 20.0%
!! TTTCCATATTTAGCAAAATA+TGG - chr7_1:73306605-73306624 None:intergenic 20.0%
!!! TTTTCTTCTTTCAGTTAAAA+CGG + chr7_1:73306983-73307002 Msa1036840:intron 20.0%
!!! AGATAATATTTATCCTTTTG+CGG + chr7_1:73307030-73307049 Msa1036840:intron 20.0%
!! CTAAGAATAATATTACTGTA+TGG - chr7_1:73307179-73307198 None:intergenic 20.0%
!!! TTGGAATTTTTTTTTTGAAG+GGG - chr7_1:73307452-73307471 None:intergenic 20.0%
!!! GATTGGAATTTTTTTTTTGA+AGG - chr7_1:73307454-73307473 None:intergenic 20.0%
!!! GCTATTTTTTTATATACGTA+CGG + chr7_1:73308056-73308075 Msa1036840:intron 20.0%
!!! CTATTTTTTTATATACGTAC+GGG + chr7_1:73308057-73308076 Msa1036840:intron 20.0%
!!! ATTTGGAACTTGAAAAAAAT+TGG + chr7_1:73308298-73308317 Msa1036840:intron 20.0%
!! TATGGATAAAGAAGAAAAAA+GGG + chr7_1:73309106-73309125 Msa1036840:intron 20.0%
!!! GTTTTTAAATGATTGAATGT+TGG + chr7_1:73309218-73309237 Msa1036840:intron 20.0%
!! AAGTAAAAATTCATTCGTAT+TGG + chr7_1:73309315-73309334 Msa1036840:intron 20.0%
!!! TTTTTTTTAACATGCGAAAA+TGG - chr7_1:73309514-73309533 None:intergenic 20.0%
! TAATGTGTATAATTGAAGCT+TGG - chr7_1:73305942-73305961 None:intergenic 25.0%
! TTAAAAAGAAAGGAGATTCA+AGG - chr7_1:73306040-73306059 None:intergenic 25.0%
! AATTAATTTCCTTTGAGTCA+TGG + chr7_1:73306067-73306086 Msa1036840:exon 25.0%
! ATTAATTTCCTTTGAGTCAT+GGG + chr7_1:73306068-73306087 Msa1036840:exon 25.0%
! TTACAAAAAGATCACAAATG+AGG + chr7_1:73306169-73306188 Msa1036840:CDS 25.0%
!!! AATCTAAGAAAGTGTTCTTT+TGG - chr7_1:73306636-73306655 None:intergenic 25.0%
!!! CTTTCTCTCTTATTTTCTTT+TGG - chr7_1:73306665-73306684 None:intergenic 25.0%
! ACAAGAAAAATATAAAGGGA+TGG + chr7_1:73306699-73306718 Msa1036840:intron 25.0%
! AAAAATATAAAGGGATGGAA+AGG + chr7_1:73306704-73306723 Msa1036840:intron 25.0%
! ATTAATTGATGTAGATTTGC+TGG + chr7_1:73306834-73306853 Msa1036840:intron 25.0%
! ACAAGACAACTATATACAAA+AGG - chr7_1:73306874-73306893 None:intergenic 25.0%
!!! TTTGAGTTCTATTTTCTACA+AGG + chr7_1:73306929-73306948 Msa1036840:intron 25.0%
! AGAAGAAAAATGATGAGATA+AGG - chr7_1:73306972-73306991 None:intergenic 25.0%
! ATCTTAAACGTAAAACTGAA+GGG - chr7_1:73307647-73307666 None:intergenic 25.0%
! TATCTTAAACGTAAAACTGA+AGG - chr7_1:73307648-73307667 None:intergenic 25.0%
! TTTCCTATATTTCATCATGA+GGG - chr7_1:73307896-73307915 None:intergenic 25.0%
!! TTTTCCTATATTTCATCATG+AGG - chr7_1:73307897-73307916 None:intergenic 25.0%
!!! TTTTATTTTTGTGTGTAACC+CGG + chr7_1:73307934-73307953 Msa1036840:intron 25.0%
!!! TCTTACTTTTTATTTTACCC+GGG - chr7_1:73307955-73307974 None:intergenic 25.0%
!!! CTCTTACTTTTTATTTTACC+CGG - chr7_1:73307956-73307975 None:intergenic 25.0%
! AAAAAATTTGAAGGAAGGTA+TGG + chr7_1:73308016-73308035 Msa1036840:intron 25.0%
! GAAATGAGATAATAGTAAGA+AGG + chr7_1:73308145-73308164 Msa1036840:intron 25.0%
! TTCAAAATTTGTAACCACTA+TGG + chr7_1:73308244-73308263 Msa1036840:intron 25.0%
! ATAATATCATCCATCTTCTA+TGG + chr7_1:73309088-73309107 Msa1036840:intron 25.0%
! CTATGGATAAAGAAGAAAAA+AGG + chr7_1:73309105-73309124 Msa1036840:intron 25.0%
! AAGTTCTATTAGTTAGTTGT+TGG + chr7_1:73309289-73309308 Msa1036840:intron 25.0%
! TAAAAATTCATTCGTATTGG+TGG + chr7_1:73309318-73309337 Msa1036840:intron 25.0%
!! AAAGGTTTACCTTAATTTGA+TGG + chr7_1:73309584-73309603 Msa1036840:intron 25.0%
! AGATCCAAATAATAATAGCA+CGG + chr7_1:73309976-73309995 Msa1036840:CDS 25.0%
GAGAGAGTTAATCACTTAAT+TGG - chr7_1:73305920-73305939 None:intergenic 30.0%
TTCAAGGAATGAAAGAGAAA+AGG - chr7_1:73306024-73306043 None:intergenic 30.0%
ACAAATGAGGAAGTTCTTAA+GGG + chr7_1:73306182-73306201 Msa1036840:CDS 30.0%
GCATAATTAACGTATATACC+TGG - chr7_1:73306254-73306273 None:intergenic 30.0%
!!! AATAACCTATGTTTTGAGGT+TGG - chr7_1:73306475-73306494 None:intergenic 30.0%
! GTGAAATAACCTATGTTTTG+AGG - chr7_1:73306479-73306498 None:intergenic 30.0%
! CTGCCATATTTTGCTAAATA+TGG + chr7_1:73306599-73306618 Msa1036840:intron 30.0%
!!! CTCTTATTTTCTTTTGGTTG+TGG - chr7_1:73306659-73306678 None:intergenic 30.0%
! ACTTTGTATTTTACCGCAAA+AGG - chr7_1:73307046-73307065 None:intergenic 30.0%
TGTGATCAAACCAAAATTCT+TGG - chr7_1:73307242-73307261 None:intergenic 30.0%
TAGAGAGTCATATCAAAGAA+AGG - chr7_1:73307813-73307832 None:intergenic 30.0%
TTCCTATATTTCATCATGAG+GGG - chr7_1:73307895-73307914 None:intergenic 30.0%
!!! TTTATTTTTGTGTGTAACCC+GGG + chr7_1:73307935-73307954 Msa1036840:intron 30.0%
TGAGATAATAGTAAGAAGGA+AGG + chr7_1:73308149-73308168 Msa1036840:intron 30.0%
GTTGTTGTCTATATAGTTGT+TGG + chr7_1:73308454-73308473 Msa1036840:intron 30.0%
GCATGAAATTAACACATGAT+GGG - chr7_1:73308511-73308530 None:intergenic 30.0%
TGCATGAAATTAACACATGA+TGG - chr7_1:73308512-73308531 None:intergenic 30.0%
CAAAGCTTAATGCAAATGAA+TGG + chr7_1:73308548-73308567 Msa1036840:CDS 30.0%
! AATGGTATTTCTTTAGCTTC+CGG + chr7_1:73308566-73308585 Msa1036840:CDS 30.0%
TAAATCCAGTTGCATATTTG+CGG - chr7_1:73308594-73308613 None:intergenic 30.0%
ATACATAGAAAACTCACCTT+AGG - chr7_1:73308805-73308824 None:intergenic 30.0%
TCTTCTTTATCCATAGAAGA+TGG - chr7_1:73309101-73309120 None:intergenic 30.0%
ACATCAAGAATGAAACATGA+AGG + chr7_1:73309167-73309186 Msa1036840:intron 30.0%
CATCAAGAATGAAACATGAA+GGG + chr7_1:73309168-73309187 Msa1036840:intron 30.0%
! CTAATGCCAATTTTGTGTAA+GGG + chr7_1:73309351-73309370 Msa1036840:intron 30.0%
! TAATGCCAATTTTGTGTAAG+GGG + chr7_1:73309352-73309371 Msa1036840:intron 30.0%
AAATACACGCCATCAAATTA+AGG - chr7_1:73309596-73309615 None:intergenic 30.0%
!!! AATTTGATGGCGTGTATTTT+TGG + chr7_1:73309597-73309616 Msa1036840:intron 30.0%
! GTCAAATTTTTGTTGATCAC+AGG + chr7_1:73309682-73309701 Msa1036840:intron 30.0%
! AAATTTTTGTTGATCACAGG+AGG + chr7_1:73309685-73309704 Msa1036840:intron 30.0%
AGATGATGACATCAAAGTTA+GGG - chr7_1:73309819-73309838 None:intergenic 30.0%
!! AAATGATGAAGTGTTGTCAT+GGG - chr7_1:73309899-73309918 None:intergenic 30.0%
!! TAAATGATGAAGTGTTGTCA+TGG - chr7_1:73309900-73309919 None:intergenic 30.0%
!!! ATGGAAGAATTGTTTTGGTT+TGG - chr7_1:73309926-73309945 None:intergenic 30.0%
! TCATCATGGAAGAATTGTTT+TGG - chr7_1:73309931-73309950 None:intergenic 30.0%
ATATTGAAGGAGATTCATCA+TGG - chr7_1:73309945-73309964 None:intergenic 30.0%
! GTAACCGTGCTATTATTATT+TGG - chr7_1:73309983-73310002 None:intergenic 30.0%
GTTACTCAAATTAGTTCCAA+AGG + chr7_1:73309998-73310017 Msa1036840:CDS 30.0%
!! TGAGGTTGATAATGATAATG+TGG + chr7_1:73310111-73310130 Msa1036840:CDS 30.0%
CTTGGATAAAATCGAAATCC+AGG - chr7_1:73306122-73306141 None:intergenic 35.0%
! TCGATTTTATCCAAGTGATG+AGG + chr7_1:73306127-73306146 Msa1036840:CDS 35.0%
TTATCCAAGTGATGAGGAAT+TGG + chr7_1:73306133-73306152 Msa1036840:CDS 35.0%
CACAAATGAGGAAGTTCTTA+AGG + chr7_1:73306181-73306200 Msa1036840:CDS 35.0%
GTACGAAAGACACAAACAAA+AGG - chr7_1:73306437-73306456 None:intergenic 35.0%
GAATACCAACCTCAAAACAT+AGG + chr7_1:73306467-73306486 Msa1036840:intron 35.0%
AACAACTAGAGACAGAACAA+AGG - chr7_1:73306540-73306559 None:intergenic 35.0%
TTGTCAGATCAAGTTCATGA+AGG - chr7_1:73306573-73306592 None:intergenic 35.0%
CAAACCAAAATTCTTGGTCA+TGG - chr7_1:73307236-73307255 None:intergenic 35.0%
TGTGACCAAACCAAAATTCT+TGG + chr7_1:73307354-73307373 Msa1036840:intron 35.0%
!!! CAAGACCAAGAATTTTGGTT+TGG - chr7_1:73307362-73307381 None:intergenic 35.0%
CAAACCAAAATTCTTGGTCT+TGG + chr7_1:73307360-73307379 Msa1036840:intron 35.0%
AGGTTAGAGAAAATCTTGTG+TGG - chr7_1:73307387-73307406 None:intergenic 35.0%
!!! TTTTTTGAAGGGGCAATGAT+TGG - chr7_1:73307442-73307461 None:intergenic 35.0%
AAATTCCAATCATTGCAGCA+AGG + chr7_1:73307463-73307482 Msa1036840:intron 35.0%
ATCAACACTGCTGTCTTTAA+CGG + chr7_1:73307738-73307757 Msa1036840:intron 35.0%
TAGCAAATACTTCCCTAACT+TGG + chr7_1:73308210-73308229 Msa1036840:intron 35.0%
TTTCATGACATCAACCATAG+TGG - chr7_1:73308261-73308280 None:intergenic 35.0%
TGTCATGAAACACTAGTATG+TGG + chr7_1:73308271-73308290 Msa1036840:intron 35.0%
CACTAGTATGTGGTAAGATT+TGG + chr7_1:73308281-73308300 Msa1036840:intron 35.0%
GTCATATGTCTATTGTGTGT+TGG - chr7_1:73308352-73308371 None:intergenic 35.0%
AACAACACGTGACTAAGTTA+AGG - chr7_1:73308440-73308459 None:intergenic 35.0%
! ATGGTATTTCTTTAGCTTCC+GGG + chr7_1:73308567-73308586 Msa1036840:CDS 35.0%
ACAAACAGAGCAACTATATC+TGG + chr7_1:73308616-73308635 Msa1036840:CDS 35.0%
GAGCAACTATATCTGGATAT+TGG + chr7_1:73308623-73308642 Msa1036840:CDS 35.0%
! GAAAGACATTGGTGTTCTAT+AGG + chr7_1:73308707-73308726 Msa1036840:CDS 35.0%
TATAGGAATAGAGCTCCAAA+TGG + chr7_1:73308724-73308743 Msa1036840:CDS 35.0%
CTCCAAATGGTATCAAAACA+GGG + chr7_1:73308737-73308756 Msa1036840:CDS 35.0%
ACCACATTGGCAAAATGATA+GGG - chr7_1:73308830-73308849 None:intergenic 35.0%
! GCTAATGCCAATTTTGTGTA+AGG + chr7_1:73309350-73309369 Msa1036840:intron 35.0%
ATGAACCCCTTACACAAAAT+TGG - chr7_1:73309360-73309379 None:intergenic 35.0%
GAATTGTTGTGTGTTGAGTT+TGG - chr7_1:73309774-73309793 None:intergenic 35.0%
GAGATGATGACATCAAAGTT+AGG - chr7_1:73309820-73309839 None:intergenic 35.0%
!! CAAGTTTGTTATAGCCACTA+GGG - chr7_1:73309862-73309881 None:intergenic 35.0%
!! TCAAGTTTGTTATAGCCACT+AGG - chr7_1:73309863-73309882 None:intergenic 35.0%
!! AATGATGAAGTGTTGTCATG+GGG - chr7_1:73309898-73309917 None:intergenic 35.0%
CTGTTTCACGAGAATATTGA+AGG - chr7_1:73309958-73309977 None:intergenic 35.0%
ATTAGTTCCAAAGGTGATGA+TGG + chr7_1:73310007-73310026 Msa1036840:CDS 35.0%
!! ATGATGGATATGGATTCTTG+TGG + chr7_1:73310023-73310042 Msa1036840:CDS 35.0%
ATATGGATTCTTGTGGAACA+TGG + chr7_1:73310030-73310049 Msa1036840:CDS 35.0%
ATTCTTGTGGAACATGGATT+TGG + chr7_1:73310036-73310055 Msa1036840:CDS 35.0%
GAAGAAAATAGCCTAGAAGA+TGG + chr7_1:73310058-73310077 Msa1036840:CDS 35.0%
CTTGGATGCAATAAGATTTG+AGG + chr7_1:73310093-73310112 Msa1036840:CDS 35.0%
GGATAAAATCGAAATCCAGG+AGG - chr7_1:73306119-73306138 None:intergenic 40.0%
ACCTTCACATATGTGAACCA+TGG + chr7_1:73306222-73306241 Msa1036840:CDS 40.0%
TAAAGGGATGGAAAGGTAAG+AGG + chr7_1:73306711-73306730 Msa1036840:intron 40.0%
! TGGACCATGACCAAGAATTT+TGG + chr7_1:73307229-73307248 Msa1036840:intron 40.0%
TCACACACAAAGAGAGAAGA+GGG - chr7_1:73307339-73307358 None:intergenic 40.0%
! TGGACCAAGACCAAGAATTT+TGG - chr7_1:73307367-73307386 None:intergenic 40.0%
GTCCCCTCATGATGAAATAT+AGG + chr7_1:73307890-73307909 Msa1036840:intron 40.0%
CAAATACTTCCCTAACTTGG+AGG + chr7_1:73308213-73308232 Msa1036840:intron 40.0%
AGTTTCAAGCCTCCAAGTTA+GGG - chr7_1:73308225-73308244 None:intergenic 40.0%
AAGTTTCAAGCCTCCAAGTT+AGG - chr7_1:73308226-73308245 None:intergenic 40.0%
GACTAAGTTAAGGTAAGGTC+AGG - chr7_1:73308430-73308449 None:intergenic 40.0%
CACGTGACTAAGTTAAGGTA+AGG - chr7_1:73308435-73308454 None:intergenic 40.0%
ATTTCATGCATTGCATGCAG+AGG + chr7_1:73308522-73308541 Msa1036840:intron 40.0%
TCTGGATATTGGAAAGCAAC+TGG + chr7_1:73308634-73308653 Msa1036840:CDS 40.0%
CTGGATATTGGAAAGCAACT+GGG + chr7_1:73308635-73308654 Msa1036840:CDS 40.0%
GTTAGATCCAATCACACAAG+AGG + chr7_1:73308672-73308691 Msa1036840:CDS 40.0%
CAATCACACAAGAGGTTGTA+GGG + chr7_1:73308680-73308699 Msa1036840:CDS 40.0%
TGTAGGGATGAGAAAGACAT+TGG + chr7_1:73308696-73308715 Msa1036840:CDS 40.0%
GCTCCAAATGGTATCAAAAC+AGG + chr7_1:73308736-73308755 Msa1036840:CDS 40.0%
!!! CACCCTGTTTTGATACCATT+TGG - chr7_1:73308742-73308761 None:intergenic 40.0%
CAAATGGTATCAAAACAGGG+TGG + chr7_1:73308740-73308759 Msa1036840:CDS 40.0%
CATAGAAAACTCACCTTAGG+AGG - chr7_1:73308802-73308821 None:intergenic 40.0%
CACCACATTGGCAAAATGAT+AGG - chr7_1:73308831-73308850 None:intergenic 40.0%
AAAACGTAGTTGCACCACAT+TGG - chr7_1:73308843-73308862 None:intergenic 40.0%
! TTCATTCGTATTGGTGGATG+AGG + chr7_1:73309324-73309343 Msa1036840:intron 40.0%
TTGTGTAAGGGGTTCATAGT+TGG + chr7_1:73309363-73309382 Msa1036840:intron 40.0%
GTGTCAAAAGAAGACGACTA+CGG - chr7_1:73309463-73309482 None:intergenic 40.0%
GATGACATCAAAGTTAGGGA+TGG - chr7_1:73309815-73309834 None:intergenic 40.0%
!! GGGATGGTTTGGTAATTTGT+TGG - chr7_1:73309842-73309861 None:intergenic 40.0%
AATTACCAAACCATCCCTAG+TGG + chr7_1:73309845-73309864 Msa1036840:CDS 40.0%
! TTTGTTATAGCCACTAGGGA+TGG - chr7_1:73309858-73309877 None:intergenic 40.0%
!! ATGATGAAGTGTTGTCATGG+GGG - chr7_1:73309897-73309916 None:intergenic 40.0%
!! TCCAAAGGTGATGATGGATA+TGG + chr7_1:73310013-73310032 Msa1036840:CDS 40.0%
TCCATATCCATCATCACCTT+TGG - chr7_1:73310017-73310036 None:intergenic 40.0%
AAATAGCCTAGAAGATGGTG+TGG + chr7_1:73310063-73310082 Msa1036840:CDS 40.0%
CTCTCAAACCCATGACTCAA+AGG - chr7_1:73306079-73306098 None:intergenic 45.0%
GTCATGGGTTTGAGAGACAT+AGG + chr7_1:73306083-73306102 Msa1036840:exon 45.0%
CACACCAATTCCTCATCACT+TGG - chr7_1:73306140-73306159 None:intergenic 45.0%
GCCATGGTTCACATATGTGA+AGG - chr7_1:73306226-73306245 None:intergenic 45.0%
TATATACCTGGAAGCTGCCA+TGG - chr7_1:73306242-73306261 None:intergenic 45.0%
GGATGGAAAGGTAAGAGGAA+GGG + chr7_1:73306716-73306735 Msa1036840:intron 45.0%
CCACACAAGTGTTTCTCATG+AGG - chr7_1:73307212-73307231 None:intergenic 45.0%
CCTCATGAGAAACACTTGTG+TGG + chr7_1:73307209-73307228 Msa1036840:intron 45.0%
GAGAGAAGAGAAGAGAGAGA+AGG - chr7_1:73307280-73307299 None:intergenic 45.0%
GTCACACACAAAGAGAGAAG+AGG - chr7_1:73307340-73307359 None:intergenic 45.0%
! GTCATGAGCTTTGTAGCATG+AGG - chr7_1:73307407-73307426 None:intergenic 45.0%
GGAATCCTTGCTGCAATGAT+TGG - chr7_1:73307471-73307490 None:intergenic 45.0%
AGCAACTGGGAAAGATCGTA+TGG + chr7_1:73308648-73308667 Msa1036840:CDS 45.0%
CCTACAACCTCTTGTGTGAT+TGG - chr7_1:73308682-73308701 None:intergenic 45.0%
CCAATCACACAAGAGGTTGT+AGG + chr7_1:73308679-73308698 Msa1036840:CDS 45.0%
! GCCCTATCATTTTGCCAATG+TGG + chr7_1:73308826-73308845 Msa1036840:intron 45.0%
! TGTTCTTTGTTGCTTGACCG+TGG + chr7_1:73309430-73309449 Msa1036840:intron 45.0%
ACGACTACGGTTTACAACCA+CGG - chr7_1:73309450-73309469 None:intergenic 45.0%
! GTCGTCTTCTTTTGACACGT+CGG + chr7_1:73309465-73309484 Msa1036840:intron 45.0%
TTTGTTGATCACAGGAGGAC+TGG + chr7_1:73309690-73309709 Msa1036840:intron 45.0%
TTGTTGATCACAGGAGGACT+GGG + chr7_1:73309691-73309710 Msa1036840:intron 45.0%
GACATCAAAGTTAGGGATGG+AGG - chr7_1:73309812-73309831 None:intergenic 45.0%
TATAGCCACTAGGGATGGTT+TGG - chr7_1:73309853-73309872 None:intergenic 45.0%
!! ATTAATAAAATTAAAAAGAA+AGG - chr7_1:73306050-73306069 None:intergenic 5.0%
!! TAAGAAATTAATATAATAAA+GGG - chr7_1:73307619-73307638 None:intergenic 5.0%
!! ATAAGAAATTAATATAATAA+AGG - chr7_1:73307620-73307639 None:intergenic 5.0%
ATAGGAGCTTCACTACCTCC+TGG + chr7_1:73306101-73306120 Msa1036840:CDS 50.0%
GGGATGGAAAGGTAAGAGGA+AGG + chr7_1:73306715-73306734 Msa1036840:intron 50.0%
TCATGCATTGCATGCAGAGG+TGG + chr7_1:73308525-73308544 Msa1036840:intron 50.0%
CAGTTGCATATTTGCGGTCC+CGG - chr7_1:73308588-73308607 None:intergenic 50.0%
CCAATGCTCAGACAAGCAAG+CGG - chr7_1:73309398-73309417 None:intergenic 50.0%
!!! TGGCGTGTATTTTTGGCGTG+AGG + chr7_1:73309604-73309623 Msa1036840:intron 50.0%
CTGAAGCCACACCATCTTCT+AGG - chr7_1:73310072-73310091 None:intergenic 50.0%
AGATGGTGTGGCTTCAGACT+TGG + chr7_1:73310075-73310094 Msa1036840:CDS 50.0%
TGTGAACCATGGCAGCTTCC+AGG + chr7_1:73306233-73306252 Msa1036840:CDS 55.0%
CGGGACCGCAAATATGCAAC+TGG + chr7_1:73308586-73308605 Msa1036840:CDS 55.0%
GACACCACACATGCCTCCTA+AGG + chr7_1:73308786-73308805 Msa1036840:CDS 55.0%
! CTCACCTTAGGAGGCATGTG+TGG - chr7_1:73308793-73308812 None:intergenic 55.0%
CCGCTTGCTTGTCTGAGCAT+TGG + chr7_1:73309395-73309414 Msa1036840:intron 55.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 73305915 73310144 73305915 ID=Msa1036840;Name=Msa1036840
chr7_1 mRNA 73305915 73310144 73305915 ID=Msa1036840-mRNA-1;Parent=Msa1036840;Name=Msa1036840-mRNA-1;_AED=0.05;_eAED=0.05;_QI=171|1|0.66|1|1|1|3|0|291
chr7_1 exon 73305915 73306254 73305915 ID=Msa1036840-mRNA-1:exon:18004;Parent=Msa1036840-mRNA-1
chr7_1 exon 73308542 73308807 73308542 ID=Msa1036840-mRNA-1:exon:18005;Parent=Msa1036840-mRNA-1
chr7_1 exon 73309704 73310144 73309704 ID=Msa1036840-mRNA-1:exon:18006;Parent=Msa1036840-mRNA-1
chr7_1 five_prime_UTR 73305915 73306085 73305915 ID=Msa1036840-mRNA-1:five_prime_utr;Parent=Msa1036840-mRNA-1
chr7_1 CDS 73306086 73306254 73306086 ID=Msa1036840-mRNA-1:cds;Parent=Msa1036840-mRNA-1
chr7_1 CDS 73308542 73308807 73308542 ID=Msa1036840-mRNA-1:cds;Parent=Msa1036840-mRNA-1
chr7_1 CDS 73309704 73310144 73309704 ID=Msa1036840-mRNA-1:cds;Parent=Msa1036840-mRNA-1
Gene Sequence

>Msa1036840

ATGGGTTTGAGAGACATAGGAGCTTCACTACCTCCTGGATTTCGATTTTATCCAAGTGATGAGGAATTGGTGTGTCACTATCTTTACAAAAAGATCACAAATGAGGAAGTTCTTAAGGGTACTTTGATTGAAATTGACCTTCACATATGTGAACCATGGCAGCTTCCAGAGGTGGCAAAGCTTAATGCAAATGAATGGTATTTCTTTAGCTTCCGGGACCGCAAATATGCAACTGGATTTAGAACAAACAGAGCAACTATATCTGGATATTGGAAAGCAACTGGGAAAGATCGTATGGTGTTAGATCCAATCACACAAGAGGTTGTAGGGATGAGAAAGACATTGGTGTTCTATAGGAATAGAGCTCCAAATGGTATCAAAACAGGGTGGATTATGCATGAATTTCGCTTAGAGACACCACACATGCCTCCTAAGGAGGACTGGGTATTGTGTAGAGTCTTTCACAAAAGCAAAGAAGAGAACAACAACAACAATAATAGTTCCAAACTCAACACACAACAATTCATGTATGAGACAACACCTCCATCCCTAACTTTGATGTCATCATCTCCAACAAATTACCAAACCATCCCTAGTGGCTATAACAAACTTGATTCTTTTTCTTCCCCCATGACAACACTTCATCATTTAAATCCAAACCAAAACAATTCTTCCATGATGAATCTCCTTCAATATTCTCGTGAAACAGATCCAAATAATAATAGCACGGTTACTCAAATTAGTTCCAAAGGTGATGATGGATATGGATTCTTGTGGAACATGGATTTGGAAGAAAATAGCCTAGAAGATGGTGTGGCTTCAGACTTGGATGCAATAAGATTTGAGGTTGATAATGATAATGTGGTCTTACTATAA
Protein sequence

>Msa1036840

MGLRDIGASLPPGFRFYPSDEELVCHYLYKKITNEEVLKGTLIEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATISGYWKATGKDRMVLDPITQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKEENNNNNNSSKLNTQQFMYETTPPSLTLMSSSPTNYQTIPSGYNKLDSFSSPMTTLHHLNPNQNNSSMMNLLQYSRETDPNNNSTVTQISSKGDDGYGFLWNMDLEENSLEDGVASDLDAIRFEVDNDNVVLL*