AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1077220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1077220 MtrunA17_Chr7g0261411 98.625 291 4 0 1 291 1 291 0.0 602
Msa1077220 MtrunA17_Chr1g0183741 76.792 293 48 8 1 291 1 275 3.55e-158 441
Msa1077220 MtrunA17_Chr2g0312321 62.893 159 50 3 6 159 7 161 1.89e-69 217
Msa1077220 MtrunA17_Chr3g0139331 43.426 251 124 5 9 246 10 255 4.49e-63 202
Msa1077220 MtrunA17_Chr2g0316971 56.250 160 64 1 8 161 21 180 1.42e-59 194
Msa1077220 MtrunA17_Chr1g0147421 47.549 204 99 3 2 197 19 222 3.83e-59 192
Msa1077220 MtrunA17_Chr4g0060931 55.844 154 60 3 10 157 17 168 3.11e-57 187
Msa1077220 MtrunA17_Chr6g0484441 56.000 150 62 2 10 157 5 152 6.24e-56 183
Msa1077220 MtrunA17_Chr6g0453451 47.236 199 81 5 10 196 20 206 7.40e-56 183
Msa1077220 MtrunA17_Chr5g0405211 55.195 154 62 4 8 156 6 157 1.29e-55 183
Msa1077220 MtrunA17_Chr7g0253011 42.593 270 113 9 10 240 17 283 1.51e-55 184
Msa1077220 MtrunA17_Chr3g0091921 46.890 209 99 6 10 211 16 219 1.76e-55 181
Msa1077220 MtrunA17_Chr4g0018391 43.379 219 110 5 8 216 5 219 1.29e-54 180
Msa1077220 MtrunA17_Chr6g0461661 53.503 157 67 2 10 160 18 174 3.41e-54 180
Msa1077220 MtrunA17_Chr1g0200561 52.866 157 67 4 5 156 14 168 4.04e-54 179
Msa1077220 MtrunA17_Chr4g0056541 41.597 238 109 8 8 231 5 226 9.45e-54 179
Msa1077220 MtrunA17_Chr4g0017921 48.649 185 77 4 8 176 6 188 1.91e-53 177
Msa1077220 MtrunA17_Chr8g0372121 49.143 175 79 5 8 174 4 176 2.74e-53 176
Msa1077220 MtrunA17_Chr5g0398971 52.564 156 65 4 8 156 5 158 5.87e-53 176
Msa1077220 MtrunA17_Chr2g0309891 50.588 170 75 3 9 171 5 172 1.64e-52 175
Msa1077220 MtrunA17_Chr6g0481091 52.903 155 65 3 8 156 4 156 9.26e-52 170
Msa1077220 MtrunA17_Chr2g0318101 50.307 163 66 2 10 157 15 177 1.53e-51 172
Msa1077220 MtrunA17_Chr3g0144271 54.483 145 62 2 10 153 23 164 2.07e-51 174
Msa1077220 MtrunA17_Chr7g0252971 48.780 164 69 3 10 158 8 171 2.38e-51 172
Msa1077220 MtrunA17_Chr4g0047841 46.369 179 69 2 10 161 15 193 4.54e-51 171
Msa1077220 MtrunA17_Chr3g0109821 54.777 157 62 3 8 157 4 158 3.08e-50 176
Msa1077220 MtrunA17_Chr4g0042561 44.886 176 86 4 8 175 7 179 3.85e-50 166
Msa1077220 MtrunA17_Chr8g0384721 46.667 180 84 3 10 181 7 182 1.90e-49 165
Msa1077220 MtrunA17_Chr7g0217721 38.372 258 122 7 13 237 22 275 2.71e-49 167
Msa1077220 MtrunA17_Chr2g0309331 51.634 153 68 4 9 156 9 160 4.95e-49 166
Msa1077220 MtrunA17_Chr5g0433781 55.769 156 61 4 8 157 4 157 5.54e-49 172
Msa1077220 MtrunA17_Chr3g0130731 48.824 170 74 4 10 170 7 172 9.83e-49 164
Msa1077220 MtrunA17_Chr3g0124761 49.091 165 74 2 10 167 7 168 1.04e-48 163
Msa1077220 MtrunA17_Chr7g0214071 50.000 156 73 2 10 163 15 167 1.16e-48 162
Msa1077220 MtrunA17_Chr7g0263931 35.739 291 137 7 10 276 11 275 2.23e-48 164
Msa1077220 MtrunA17_Chr5g0400461 49.123 171 79 4 7 169 3 173 4.37e-48 163
Msa1077220 MtrunA17_Chr5g0417791 46.452 155 73 2 10 156 3 155 4.96e-48 160
Msa1077220 MtrunA17_Chr2g0326361 43.000 200 101 3 9 195 13 212 1.04e-47 162
Msa1077220 MtrunA17_Chr8g0346001 34.050 279 152 6 8 263 13 282 1.19e-46 162
Msa1077220 MtrunA17_Chr2g0318081 48.171 164 75 3 1 156 3 164 2.93e-46 159
Msa1077220 MtrunA17_Chr8g0359921 48.701 154 71 2 9 156 13 164 6.48e-45 155
Msa1077220 MtrunA17_Chr7g0217711 52.756 127 58 1 12 138 21 145 2.16e-44 149
Msa1077220 MtrunA17_Chr8g0361731 40.828 169 87 1 2 157 6 174 9.01e-44 153
Msa1077220 MtrunA17_Chr3g0092671 50.000 152 68 4 12 157 7 156 2.44e-43 155
Msa1077220 MtrunA17_Chr4g0054791 48.148 162 73 4 7 159 3 162 1.71e-42 148
Msa1077220 MtrunA17_Chr5g0417001 41.772 158 80 1 12 157 16 173 3.97e-42 149
Msa1077220 MtrunA17_Chr1g0197351 47.500 160 70 3 9 156 41 198 4.46e-42 150
Msa1077220 MtrunA17_Chr6g0453131 42.857 161 78 3 10 157 15 174 3.48e-41 146
Msa1077220 MtrunA17_Chr1g0197361 50.000 152 68 5 12 157 10 159 1.76e-40 148
Msa1077220 MtrunA17_Chr3g0128111 41.622 185 98 4 13 189 45 227 1.06e-39 139
Msa1077220 MtrunA17_Chr4g0076731 46.104 154 78 3 12 162 56 207 1.59e-39 143
Msa1077220 MtrunA17_Chr3g0130101 45.695 151 74 3 12 156 9 157 3.90e-39 140
Msa1077220 MtrunA17_Chr5g0428991 48.077 156 73 3 10 159 25 178 8.24e-39 144
Msa1077220 MtrunA17_Chr3g0128151 46.497 157 76 3 9 159 21 175 1.78e-38 142
Msa1077220 MtrunA17_Chr8g0364791 43.137 153 79 3 10 156 6 156 2.68e-37 137
Msa1077220 MtrunA17_Chr5g0442771 40.881 159 80 2 12 156 20 178 5.62e-37 133
Msa1077220 MtrunA17_Chr4g0038751 42.953 149 79 3 12 157 17 162 1.13e-36 132
Msa1077220 MtrunA17_Chr1g0201021 45.395 152 75 3 12 157 21 170 2.77e-36 136
Msa1077220 MtrunA17_Chr8g0345671 46.259 147 74 4 10 153 11 155 3.12e-36 133
Msa1077220 MtrunA17_Chr2g0311651 42.331 163 76 4 12 156 24 186 6.42e-35 128
Msa1077220 MtrunA17_Chr2g0311661 40.244 164 80 3 12 157 23 186 1.16e-34 127
Msa1077220 MtrunA17_Chr8g0384201 41.176 153 82 3 10 156 6 156 1.43e-34 130
Msa1077220 MtrunA17_Chr8g0385991 41.290 155 80 3 8 153 12 164 1.92e-34 124
Msa1077220 MtrunA17_Chr8g0345691 43.537 147 78 4 10 153 12 156 1.99e-33 126
Msa1077220 MtrunA17_Chr3g0131911 41.718 163 81 3 8 158 12 172 5.62e-33 121
Msa1077220 MtrunA17_Chr3g0113001 38.571 210 103 10 43 237 1 199 4.89e-32 120
Msa1077220 MtrunA17_Chr2g0321631 41.401 157 78 5 11 154 5 160 1.79e-31 117
Msa1077220 MtrunA17_Chr4g0050701 34.831 178 96 3 10 176 11 179 2.31e-31 115
Msa1077220 MtrunA17_Chr4g0026141 38.365 159 81 5 10 154 5 160 2.06e-30 115
Msa1077220 MtrunA17_Chr7g0266701 35.366 164 90 5 10 158 4 166 2.22e-28 109
Msa1077220 MtrunA17_Chr8g0345711 42.857 133 72 3 6 135 8 139 1.53e-27 105
Msa1077220 MtrunA17_Chr8g0345701 38.514 148 71 5 5 135 2 146 2.42e-26 102
Msa1077220 MtrunA17_Chr8g0345721 36.095 169 70 4 4 135 24 191 3.23e-26 102
Msa1077220 MtrunA17_Chr7g0243371 53.086 81 38 0 64 144 18 98 1.10e-24 95.9
Msa1077220 MtrunA17_Chr2g0321741 40.411 146 78 5 30 171 12 152 2.31e-24 100
Msa1077220 MtrunA17_Chr3g0113031 37.778 180 90 7 73 237 3 175 2.48e-24 99.0
Msa1077220 MtrunA17_Chr8g0345731 40.458 131 73 3 10 135 24 154 1.14e-23 94.7
Msa1077220 MtrunA17_Chr8g0384351 37.500 152 77 5 8 159 8 141 8.61e-22 90.1
Msa1077220 MtrunA17_Chr8g0345741 33.962 159 96 4 21 176 2 154 2.75e-21 88.2
Msa1077220 MtrunA17_Chr3g0130321 29.545 176 82 6 8 158 5 163 1.54e-16 76.6
Msa1077220 MtrunA17_Chr7g0251671 33.553 152 85 5 1 145 1 143 1.61e-16 75.5
Msa1077220 MtrunA17_Chr7g0251651 30.968 155 86 6 7 158 15 151 1.69e-16 76.3
Msa1077220 MtrunA17_Chr7g0251661 29.932 147 97 4 1 145 1 143 4.07e-14 68.6
Msa1077220 MtrunA17_Chr2g0282871 29.480 173 103 6 9 165 52 221 6.67e-13 67.8
Msa1077220 MtrunA17_Chr3g0113011 50.000 48 24 0 9 56 18 65 2.82e-12 61.2
Msa1077220 MtrunA17_Chr5g0422431 28.994 169 96 7 9 159 57 219 1.95e-11 64.3
Msa1077220 MtrunA17_Chr4g0046431 28.977 176 106 6 9 168 67 239 2.14e-11 63.5
Msa1077220 MtrunA17_Chr1g0168571 29.861 144 90 6 18 152 13 154 8.58e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1077220 AT4G28530.1 73.143 175 31 2 1 159 1 175 3.21e-93 280
Msa1077220 AT1G56010.2 47.009 234 100 5 6 231 15 232 1.24e-64 206
Msa1077220 AT3G12977.1 57.051 156 60 3 6 156 14 167 1.72e-61 196
Msa1077220 AT1G76420.1 56.688 157 65 1 9 162 21 177 2.66e-61 197
Msa1077220 AT2G24430.2 54.902 153 66 1 9 158 15 167 2.46e-60 194
Msa1077220 AT2G24430.1 54.902 153 66 1 9 158 15 167 2.46e-60 194
Msa1077220 AT4G28530.2 54.286 175 27 3 1 159 1 138 1.19e-58 190
Msa1077220 AT5G53950.1 55.844 154 62 1 10 157 17 170 3.70e-58 191
Msa1077220 AT3G18400.1 56.291 151 61 3 10 157 5 153 4.50e-58 189
Msa1077220 AT5G61430.1 57.143 154 58 3 10 157 16 167 4.64e-58 189
Msa1077220 AT5G07680.2 56.494 154 59 3 10 157 3 154 6.19e-58 188
Msa1077220 AT5G07680.1 56.494 154 59 3 10 157 17 168 9.47e-58 188
Msa1077220 AT4G36160.1 48.718 195 90 6 5 194 5 194 1.70e-56 186
Msa1077220 AT4G36160.3 48.718 195 90 6 5 194 5 194 1.70e-56 186
Msa1077220 AT4G36160.2 48.718 195 90 6 5 194 9 198 2.16e-56 186
Msa1077220 AT2G18060.3 46.875 192 92 5 8 194 7 193 1.18e-55 184
Msa1077220 AT2G18060.1 46.875 192 92 5 8 194 7 193 1.18e-55 184
Msa1077220 AT3G15170.1 50.617 162 74 1 10 165 20 181 2.29e-55 181
Msa1077220 AT5G39610.1 55.556 153 60 3 10 156 20 170 2.65e-55 181
Msa1077220 AT1G71930.2 41.975 243 111 6 6 243 5 222 4.62e-55 181
Msa1077220 AT1G71930.1 41.975 243 111 6 6 243 5 222 4.62e-55 181
Msa1077220 AT5G18270.1 55.556 153 61 3 10 156 21 172 1.42e-54 180
Msa1077220 AT5G18270.2 55.556 153 61 3 10 156 21 172 1.73e-54 180
Msa1077220 AT3G29035.1 48.936 188 74 4 10 191 24 195 3.15e-54 179
Msa1077220 AT1G12260.2 53.247 154 65 3 8 156 5 156 6.24e-54 179
Msa1077220 AT3G04060.1 54.902 153 62 3 10 156 20 171 7.44e-54 178
Msa1077220 AT1G12260.1 53.247 154 65 3 8 156 5 156 8.90e-54 180
Msa1077220 AT4G10350.1 46.535 202 82 6 8 185 7 206 9.04e-54 178
Msa1077220 AT5G66300.1 52.830 159 67 4 4 156 6 162 1.36e-53 176
Msa1077220 AT3G04070.2 47.368 171 76 2 1 157 1 171 3.78e-53 177
Msa1077220 AT1G33280.1 49.727 183 81 5 8 181 6 186 4.68e-53 176
Msa1077220 AT1G62700.1 52.597 154 66 3 8 156 5 156 1.34e-52 177
Msa1077220 AT1G62700.2 52.597 154 66 3 8 156 5 156 1.34e-52 177
Msa1077220 AT5G62380.2 52.147 163 71 4 8 165 5 165 1.69e-51 172
Msa1077220 AT5G62380.1 52.147 163 71 4 8 165 5 165 1.69e-51 172
Msa1077220 AT3G03200.1 53.846 156 63 3 8 156 4 157 2.53e-51 176
Msa1077220 AT3G17730.1 52.258 155 66 3 8 156 4 156 3.87e-51 169
Msa1077220 AT5G17260.1 52.564 156 65 3 8 156 4 157 6.97e-51 174
Msa1077220 AT3G04070.1 43.316 187 76 2 1 157 1 187 1.03e-50 171
Msa1077220 AT1G54330.1 55.629 151 62 3 9 156 5 153 5.19e-50 167
Msa1077220 AT3G15510.1 41.117 197 100 3 14 195 21 216 4.47e-49 167
Msa1077220 AT1G79580.3 51.974 152 68 3 9 156 16 166 1.11e-48 166
Msa1077220 AT1G79580.5 51.974 152 68 3 9 156 16 166 1.11e-48 166
Msa1077220 AT1G79580.4 51.974 152 68 3 9 156 16 166 1.11e-48 166
Msa1077220 AT1G79580.2 51.974 152 68 3 9 156 16 166 1.11e-48 166
Msa1077220 AT1G79580.1 51.974 152 68 3 9 156 16 166 1.11e-48 166
Msa1077220 AT1G61110.1 47.486 179 74 4 1 160 4 181 1.56e-48 164
Msa1077220 AT1G01720.1 43.590 195 97 3 10 196 7 196 2.98e-48 162
Msa1077220 AT1G65910.1 53.125 160 67 3 8 161 4 161 3.07e-48 170
Msa1077220 AT1G32770.1 45.181 166 72 3 8 156 14 177 5.96e-48 164
Msa1077220 AT5G08790.1 43.750 192 96 2 10 192 7 195 8.61e-48 161
Msa1077220 AT3G61910.1 41.463 205 96 4 8 190 9 211 4.45e-47 160
Msa1077220 AT1G69490.1 46.497 157 74 2 8 156 7 161 5.81e-47 159
Msa1077220 AT2G46770.1 44.379 169 72 3 8 156 14 180 6.18e-47 161
Msa1077220 AT1G52890.1 46.199 171 86 2 9 175 13 181 6.37e-47 160
Msa1077220 AT3G15500.1 48.780 164 74 3 1 156 1 162 1.09e-46 159
Msa1077220 AT4G27410.2 48.485 165 75 4 1 157 1 163 1.09e-46 159
Msa1077220 AT5G46590.1 41.784 213 109 5 8 213 4 208 1.82e-46 158
Msa1077220 AT5G63790.1 49.359 156 67 2 10 156 50 202 2.53e-46 158
Msa1077220 AT5G63790.2 49.359 156 67 2 10 156 60 212 3.07e-46 158
Msa1077220 AT3G10480.1 50.318 157 69 3 7 156 24 178 3.99e-46 161
Msa1077220 AT4G35580.1 45.050 202 101 4 9 202 8 207 4.34e-46 162
Msa1077220 AT4G35580.2 45.050 202 101 4 9 202 8 207 4.99e-46 162
Msa1077220 AT4G35580.3 45.050 202 101 4 9 202 8 207 5.40e-46 162
Msa1077220 AT3G10490.1 47.531 162 76 3 2 156 19 178 1.06e-45 154
Msa1077220 AT1G77450.1 48.428 159 70 3 7 156 5 160 1.14e-45 155
Msa1077220 AT5G04410.1 49.677 155 70 3 9 157 8 160 1.48e-45 162
Msa1077220 AT1G33060.1 43.842 203 105 4 9 205 23 222 4.08e-45 162
Msa1077220 AT1G33060.2 43.842 203 105 4 9 205 23 222 4.27e-45 162
Msa1077220 AT3G10480.2 51.282 156 68 4 7 156 24 177 5.60e-45 158
Msa1077220 AT3G10490.2 47.531 162 76 3 2 156 19 178 1.36e-44 157
Msa1077220 AT5G13180.1 35.484 248 138 4 10 253 14 243 3.80e-44 151
Msa1077220 AT3G10500.1 49.032 155 71 3 9 157 8 160 8.50e-44 157
Msa1077220 AT1G56010.1 46.961 181 73 4 58 231 1 165 1.67e-43 149
Msa1077220 AT5G39820.1 35.169 236 109 4 12 208 22 252 2.08e-43 151
Msa1077220 AT5G46590.2 40.385 208 108 4 8 213 4 197 2.98e-43 149
Msa1077220 AT4G27410.3 45.055 182 73 6 1 157 1 180 4.71e-43 150
Msa1077220 AT4G17980.1 48.428 159 70 3 8 156 4 160 5.75e-43 148
Msa1077220 AT4G17980.2 47.826 161 72 3 8 158 4 162 7.38e-43 149
Msa1077220 AT1G32510.1 46.667 165 76 3 6 158 2 166 1.03e-42 148
Msa1077220 AT2G33480.2 46.795 156 76 3 10 163 15 165 2.04e-41 144
Msa1077220 AT2G33480.1 46.203 158 76 3 10 163 15 167 4.44e-41 143
Msa1077220 AT2G02450.1 41.436 181 85 4 12 174 53 230 5.58e-41 146
Msa1077220 AT2G02450.2 41.436 181 85 4 12 174 53 230 9.94e-41 146
Msa1077220 AT1G26870.1 40.741 162 81 2 10 157 16 176 1.11e-40 146
Msa1077220 AT3G12977.2 60.748 107 35 3 55 156 10 114 1.99e-40 140
Msa1077220 AT2G43000.1 43.312 157 80 3 12 162 20 173 3.01e-40 141
Msa1077220 AT5G24590.2 47.742 155 74 3 8 156 11 164 4.64e-40 145
Msa1077220 AT3G10480.3 42.105 190 68 4 7 156 24 211 6.62e-40 146
Msa1077220 AT3G49530.2 44.231 156 80 3 9 158 12 166 5.12e-39 141
Msa1077220 AT3G49530.1 44.805 154 78 3 9 156 12 164 1.61e-38 141
Msa1077220 AT2G27300.1 46.259 147 73 3 8 153 12 153 1.64e-38 138
Msa1077220 AT1G52880.1 43.860 171 74 4 14 169 21 184 2.93e-38 137
Msa1077220 AT5G09330.5 44.444 153 77 3 10 156 6 156 1.08e-37 139
Msa1077220 AT5G09330.2 44.444 153 77 3 10 156 6 156 1.08e-37 139
Msa1077220 AT5G09330.4 44.444 153 77 3 10 156 6 156 1.08e-37 139
Msa1077220 AT5G09330.3 44.444 153 77 3 10 156 6 156 1.08e-37 139
Msa1077220 AT5G09330.1 44.444 153 77 3 10 156 6 156 1.08e-37 139
Msa1077220 AT2G17040.1 42.857 147 82 2 12 157 8 153 8.77e-37 132
Msa1077220 AT1G34180.3 41.401 157 84 3 7 157 13 167 9.28e-37 136
Msa1077220 AT5G61430.2 59.434 106 35 3 58 157 1 104 1.01e-36 132
Msa1077220 AT1G34180.1 42.105 152 80 3 12 157 18 167 3.79e-36 136
Msa1077220 AT4G10350.2 46.452 155 57 6 55 185 7 159 8.19e-36 130
Msa1077220 AT1G34190.1 42.105 152 80 3 12 157 18 167 1.43e-35 134
Msa1077220 AT1G34180.4 38.462 169 84 3 7 157 13 179 1.25e-34 130
Msa1077220 AT1G34180.2 39.024 164 80 3 12 157 18 179 5.19e-34 130
Msa1077220 AT3G12910.1 43.636 165 73 5 12 157 23 186 9.75e-34 125
Msa1077220 AT1G32870.2 44.937 158 75 4 8 157 8 161 1.80e-33 128
Msa1077220 AT1G32870.1 44.937 158 75 4 8 157 8 161 1.95e-33 128
Msa1077220 AT5G64060.1 39.869 153 84 3 10 156 6 156 2.88e-33 125
Msa1077220 AT1G32870.3 44.937 158 75 4 8 157 44 197 3.30e-33 128
Msa1077220 AT5G04395.1 42.384 151 73 2 1 137 19 169 3.90e-32 117
Msa1077220 AT5G22290.1 38.012 171 95 5 4 168 10 175 6.33e-32 121
Msa1077220 AT3G44290.2 40.559 143 79 3 12 153 16 153 1.56e-30 115
Msa1077220 AT3G44290.1 40.559 143 79 3 12 153 16 153 7.32e-30 115
Msa1077220 AT3G44350.2 35.648 216 116 8 6 205 1 209 1.42e-29 112
Msa1077220 AT4G01550.1 36.598 194 104 6 13 200 7 187 4.37e-29 115
Msa1077220 AT5G64530.1 32.418 182 91 4 10 171 3 172 3.13e-26 102
Msa1077220 AT3G44350.1 41.912 136 73 3 6 136 1 135 3.61e-26 101
Msa1077220 AT2G33480.3 48.077 104 48 2 64 163 9 110 1.05e-25 101
Msa1077220 AT4G01520.1 37.013 154 89 6 11 158 5 156 3.68e-24 99.8
Msa1077220 AT5G22380.1 37.013 154 84 5 13 154 8 160 4.55e-24 97.8
Msa1077220 AT4G01540.3 36.842 152 88 6 13 158 7 156 5.03e-23 98.2
Msa1077220 AT4G01540.4 36.842 152 88 6 13 158 7 156 5.08e-23 97.8
Msa1077220 AT4G01540.2 36.842 152 88 6 13 158 7 156 5.74e-23 98.2
Msa1077220 AT4G01540.1 36.842 152 88 6 13 158 7 156 5.87e-23 98.6
Msa1077220 AT1G02230.1 36.364 154 90 5 11 159 4 154 1.23e-22 96.7
Msa1077220 AT5G64530.2 36.719 128 69 2 10 137 3 118 1.71e-22 91.7
Msa1077220 AT2G18060.2 56.944 72 27 3 87 156 1 70 3.60e-22 94.0
Msa1077220 AT3G04420.2 33.333 150 93 4 11 156 4 150 5.20e-21 90.9
Msa1077220 AT3G04420.1 33.333 150 93 4 11 156 4 150 1.27e-20 90.5
Msa1077220 AT3G10490.4 53.165 79 30 2 83 156 2 78 8.41e-19 85.5
Msa1077220 AT3G10490.3 53.165 79 30 2 83 156 2 78 8.41e-19 85.5
Msa1077220 AT1G01010.1 33.750 160 91 6 13 161 6 161 2.67e-18 84.7
Msa1077220 AT2G43000.2 42.857 98 47 3 71 162 1 95 1.04e-17 79.7
Msa1077220 AT1G02250.1 32.432 148 92 4 11 153 4 148 2.53e-17 81.6
Msa1077220 AT5G50820.1 37.226 137 62 5 10 137 17 138 1.76e-16 76.3
Msa1077220 AT1G02220.1 31.008 129 80 4 11 135 4 127 3.34e-16 78.6
Msa1077220 AT3G04430.1 35.507 138 75 5 16 141 6 141 3.28e-15 73.2
Msa1077220 AT3G56530.1 27.815 151 102 4 9 154 51 199 2.49e-14 72.4
Msa1077220 AT5G14000.2 30.827 133 86 3 7 137 12 140 5.13e-13 65.9
Msa1077220 AT5G14000.1 25.581 172 121 4 7 175 12 179 2.07e-12 65.5
Msa1077220 AT1G28470.1 31.325 166 95 7 9 158 76 238 3.19e-12 66.2
Msa1077220 AT3G55210.1 26.994 163 103 4 6 154 7 167 3.37e-12 65.9
Msa1077220 AT5G22290.2 42.500 80 41 3 89 168 2 76 5.56e-12 64.7
Msa1077220 AT4G29230.2 29.319 191 101 10 10 172 47 231 3.44e-11 63.9
Msa1077220 AT4G29230.1 29.319 191 101 10 10 172 48 232 3.51e-11 63.9
Msa1077220 AT4G29230.3 29.016 193 103 10 8 172 46 232 5.85e-11 63.2

Find 77 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAACCGTGCTATTATTATT+TGG 0.209937 7_2:+75796304 None:intergenic
GAGAGAGTTAATCACTTAAT+TGG 0.213060 7_2:+75800502 None:intergenic
CTGAAGCCACACCATCTTCT+AGG 0.277699 7_2:+75796215 None:intergenic
CACAAATGAGGAAGTTCTTA+AGG 0.329369 7_2:-75800238 Msa1077220:CDS
ACAAACAGAGCAACTATATC+TGG 0.343800 7_2:-75797668 Msa1077220:CDS
ATGGTATTTCTTTAGCTTCC+GGG 0.345420 7_2:-75797717 Msa1077220:CDS
GAGCAACTATATCTGGATAT+TGG 0.349161 7_2:-75797661 Msa1077220:CDS
GCTCCAAATGGTATCAAAAC+AGG 0.356435 7_2:-75797548 Msa1077220:CDS
TCATCATGGAAGAATTGTTT+TGG 0.356600 7_2:+75796356 None:intergenic
TGTGAACCATGGCAGCTTCC+AGG 0.356905 7_2:-75800186 Msa1077220:intron
ATTCTTGTGGAACATGGATT+TGG 0.363780 7_2:-75796248 Msa1077220:CDS
TCTGGATATTGGAAAGCAAC+TGG 0.367759 7_2:-75797650 Msa1077220:CDS
GAGATGATGACATCAAAGTT+AGG 0.374943 7_2:+75796467 None:intergenic
CCTACAACCTCTTGTGTGAT+TGG 0.380585 7_2:+75797605 None:intergenic
TTATCCAAGTGATGAGGAAT+TGG 0.381621 7_2:-75800286 Msa1077220:CDS
GAATTGTTGTGTGTTGAGTT+TGG 0.385310 7_2:+75796513 None:intergenic
TCCAAAGGTGATGATGGATA+TGG 0.397088 7_2:-75796271 Msa1077220:CDS
AATGGTATTTCTTTAGCTTC+CGG 0.397370 7_2:-75797718 Msa1077220:CDS
ATTAATTTCCTTTGAGTCAT+GGG 0.405147 7_2:-75800351 Msa1077220:exon
TATAGCCACTAGGGATGGTT+TGG 0.417138 7_2:+75796434 None:intergenic
GGGATGGTTTGGTAATTTGT+TGG 0.418314 7_2:+75796445 None:intergenic
TAAATCCAGTTGCATATTTG+CGG 0.420581 7_2:+75797693 None:intergenic
TCCATATCCATCATCACCTT+TGG 0.424892 7_2:+75796270 None:intergenic
GAAAGACATTGGTGTTCTAT+AGG 0.425789 7_2:-75797577 Msa1077220:CDS
TTCAAGGAATGAAAGAGAAA+AGG 0.434645 7_2:+75800398 None:intergenic
CTTGGATGCAATAAGATTTG+AGG 0.438363 7_2:-75796191 Msa1077220:CDS
CGGGACCGCAAATATGCAAC+TGG 0.444721 7_2:-75797698 Msa1077220:CDS
TTTGTTGATCACAGGAGGAC+TGG 0.451819 7_2:-75796594 Msa1077220:intron
CAGTTGCATATTTGCGGTCC+CGG 0.454823 7_2:+75797699 None:intergenic
CCAATCACACAAGAGGTTGT+AGG 0.461134 7_2:-75797605 Msa1077220:CDS
ATTAGTTCCAAAGGTGATGA+TGG 0.463352 7_2:-75796277 Msa1077220:CDS
AATTAATTTCCTTTGAGTCA+TGG 0.466324 7_2:-75800352 Msa1077220:exon
CACACCAATTCCTCATCACT+TGG 0.483760 7_2:+75800282 None:intergenic
CTTGGATAAAATCGAAATCC+AGG 0.488698 7_2:+75800300 None:intergenic
TTGTTGATCACAGGAGGACT+GGG 0.497348 7_2:-75796593 Msa1077220:intron
CTCTCAAACCCATGACTCAA+AGG 0.497598 7_2:+75800343 None:intergenic
ACAAATGAGGAAGTTCTTAA+GGG 0.506795 7_2:-75800237 Msa1077220:CDS
CTGTTTCACGAGAATATTGA+AGG 0.508957 7_2:+75796329 None:intergenic
AGATGATGACATCAAAGTTA+GGG 0.519573 7_2:+75796468 None:intergenic
CAATCACACAAGAGGTTGTA+GGG 0.525240 7_2:-75797604 Msa1077220:CDS
ATAGGAGCTTCACTACCTCC+TGG 0.533290 7_2:-75800318 Msa1077220:CDS
TTTGTATAAAGAAAGAAATG+TGG 0.541065 7_2:+75800456 None:intergenic
CTGGATATTGGAAAGCAACT+GGG 0.545781 7_2:-75797649 Msa1077220:CDS
TAAATGATGAAGTGTTGTCA+TGG 0.547733 7_2:+75796387 None:intergenic
AGATGGTGTGGCTTCAGACT+TGG 0.547899 7_2:-75796209 Msa1077220:CDS
TATATACCTGGAAGCTGCCA+TGG 0.548318 7_2:+75800180 None:intergenic
CAAGTTTGTTATAGCCACTA+GGG 0.549346 7_2:+75796425 None:intergenic
GAAGAAAATAGCCTAGAAGA+TGG 0.553895 7_2:-75796226 Msa1077220:CDS
CAAAGCTTAATGCAAATGAA+TGG 0.555762 7_2:-75797736 Msa1077220:CDS
ATATGGATTCTTGTGGAACA+TGG 0.561084 7_2:-75796254 Msa1077220:CDS
AAATGATGAAGTGTTGTCAT+GGG 0.565391 7_2:+75796388 None:intergenic
TAATGTGTATAATTGAAGCT+TGG 0.566960 7_2:+75800480 None:intergenic
GACACCACACATGCCTCCTA+AGG 0.568201 7_2:-75797498 Msa1077220:intron
TTTGTTATAGCCACTAGGGA+TGG 0.575379 7_2:+75796429 None:intergenic
GTTACTCAAATTAGTTCCAA+AGG 0.576717 7_2:-75796286 Msa1077220:CDS
GTCATGGGTTTGAGAGACAT+AGG 0.581509 7_2:-75800336 Msa1077220:CDS
AGCAACTGGGAAAGATCGTA+TGG 0.583285 7_2:-75797636 Msa1077220:CDS
TCAAGTTTGTTATAGCCACT+AGG 0.587656 7_2:+75796424 None:intergenic
TATAGGAATAGAGCTCCAAA+TGG 0.588028 7_2:-75797560 Msa1077220:CDS
TGAGGTTGATAATGATAATG+TGG 0.588693 7_2:-75796173 Msa1077220:CDS
TGTAGGGATGAGAAAGACAT+TGG 0.588790 7_2:-75797588 Msa1077220:CDS
GATGACATCAAAGTTAGGGA+TGG 0.596756 7_2:+75796472 None:intergenic
CTCCAAATGGTATCAAAACA+GGG 0.600706 7_2:-75797547 Msa1077220:CDS
GACATCAAAGTTAGGGATGG+AGG 0.613884 7_2:+75796475 None:intergenic
ATATTGAAGGAGATTCATCA+TGG 0.619903 7_2:+75796342 None:intergenic
CTCACCTTAGGAGGCATGTG+TGG 0.621337 7_2:+75797494 None:intergenic
AAATAGCCTAGAAGATGGTG+TGG 0.624894 7_2:-75796221 Msa1077220:CDS
GCCATGGTTCACATATGTGA+AGG 0.625702 7_2:+75800196 None:intergenic
ATGATGGATATGGATTCTTG+TGG 0.648298 7_2:-75796261 Msa1077220:CDS
AGATCCAAATAATAATAGCA+CGG 0.654615 7_2:-75796308 Msa1077220:CDS
GTTAGATCCAATCACACAAG+AGG 0.657130 7_2:-75797612 Msa1077220:CDS
AATGATGAAGTGTTGTCATG+GGG 0.659787 7_2:+75796389 None:intergenic
ATGATGAAGTGTTGTCATGG+GGG 0.660202 7_2:+75796390 None:intergenic
ACCTTCACATATGTGAACCA+TGG 0.672346 7_2:-75800197 Msa1077220:CDS
AATTACCAAACCATCCCTAG+TGG 0.692848 7_2:-75796439 Msa1077220:CDS
CAAATGGTATCAAAACAGGG+TGG 0.731036 7_2:-75797544 Msa1077220:CDS
GGATAAAATCGAAATCCAGG+AGG 0.731687 7_2:+75800303 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATATGAAAAAAATACA+GGG + chr7_2:75797545-75797564 None:intergenic 10.0%
!!! TTTTTATATGAAAAAAATAC+AGG + chr7_2:75797546-75797565 None:intergenic 10.0%
!!! TTTAAGATAGATAAAAAAAT+TGG - chr7_2:75797711-75797730 Msa1077220:CDS 10.0%
!! TTTCAAATAACAAAATTAAT+TGG - chr7_2:75798081-75798100 Msa1077220:intron 10.0%
!!! AAATAGCTTTTTAATTTTTA+TGG + chr7_2:75798150-75798169 None:intergenic 10.0%
!!! ATCAAAAGTATAAAAATTAA+GGG - chr7_2:75799297-75799316 Msa1077220:intron 10.0%
!!! AGAACTTATTTTATTTAATA+TGG + chr7_2:75799658-75799677 None:intergenic 10.0%
!! ATGTTAAAAAAAAAAATCTA+AGG - chr7_2:75799903-75799922 Msa1077220:intron 10.0%
!! TGTTAAAAAAAAAAATCTAA+GGG - chr7_2:75799904-75799923 Msa1077220:intron 10.0%
!!! TTAATAATTTGTTTGATTTC+TGG - chr7_2:75796609-75796628 Msa1077220:intron 15.0%
!! CATTCAATAAATAAAGTAAT+AGG - chr7_2:75797012-75797031 Msa1077220:intron 15.0%
!!! ATTGGATTTTTTTTTTTGAA+GGG + chr7_2:75797505-75797524 None:intergenic 15.0%
!! TTTATATGAAAAAAATACAG+GGG + chr7_2:75797544-75797563 None:intergenic 15.0%
!! AAAAAAAAAAAATTGAAGGA+AGG - chr7_2:75798118-75798137 Msa1077220:intron 15.0%
!!! TTTGCTACTAATTTTTTTAA+AGG + chr7_2:75798579-75798598 None:intergenic 15.0%
!!! CATCAAAAGTATAAAAATTA+AGG - chr7_2:75799296-75799315 Msa1077220:intron 15.0%
!! TATGACAAATGAAAAATAAA+AGG - chr7_2:75799949-75799968 Msa1077220:intron 15.0%
!!! CACATATATTTTTGTTAATT+AGG - chr7_2:75800042-75800061 Msa1077220:intron 15.0%
!! TTTGTATAAAGAAAGAAATG+TGG + chr7_2:75796213-75796232 None:intergenic 20.0%
!!! GAAATTTAATGAAGATTTTG+TGG + chr7_2:75796249-75796268 None:intergenic 20.0%
!! AATTATCTGAATTATCTTCA+TGG - chr7_2:75796565-75796584 Msa1077220:CDS 20.0%
!! TTTCCATATTTAGCAAAATA+TGG + chr7_2:75796852-75796871 None:intergenic 20.0%
!! AGAATACAAGAAAAATAGAA+AGG - chr7_2:75796941-75796960 Msa1077220:intron 20.0%
!! GAATACAAGAAAAATAGAAA+GGG - chr7_2:75796942-75796961 Msa1077220:intron 20.0%
!!! TTTTCTTCTTTCAGTTAAAA+CGG - chr7_2:75797230-75797249 Msa1077220:intron 20.0%
!!! AGATAATATTTATCCTTTTG+CGG - chr7_2:75797277-75797296 Msa1077220:intron 20.0%
!! CTAAGAATAATATTACTGTA+TGG + chr7_2:75797426-75797445 None:intergenic 20.0%
!!! TTGGATTTTTTTTTTTGAAG+GGG + chr7_2:75797504-75797523 None:intergenic 20.0%
!!! GATTGGATTTTTTTTTTTGA+AGG + chr7_2:75797506-75797525 None:intergenic 20.0%
!!! TTTTTTCTTTTAACCATGAT+TGG - chr7_2:75798249-75798268 Msa1077220:intron 20.0%
!!! TCTCTTTTTTTATATACGTA+CGG - chr7_2:75798438-75798457 Msa1077220:intron 20.0%
!!! ATTTGGAACTTGAAAAAAAT+TGG - chr7_2:75798680-75798699 Msa1077220:intron 20.0%
!! TATGGATAAAGAAGAAAAAA+GGG - chr7_2:75799488-75799507 Msa1077220:intron 20.0%
!!! GTTTTTAAATGATTGAATGT+TGG - chr7_2:75799600-75799619 Msa1077220:intron 20.0%
!! AAGTAAAAATTCATTCGTAT+TGG - chr7_2:75799697-75799716 Msa1077220:intron 20.0%
!!! TTTTTTTTAACATGCGAAAA+TGG + chr7_2:75799896-75799915 None:intergenic 20.0%
! TAATGTGTATAATTGAAGCT+TGG + chr7_2:75796189-75796208 None:intergenic 25.0%
! TTAAAAAGAAAGGAGATTCA+AGG + chr7_2:75796287-75796306 None:intergenic 25.0%
! AATTAATTTCCTTTGAGTCA+TGG - chr7_2:75796314-75796333 Msa1077220:CDS 25.0%
! ATTAATTTCCTTTGAGTCAT+GGG - chr7_2:75796315-75796334 Msa1077220:CDS 25.0%
! TTACAAAAAGATCACAAATG+AGG - chr7_2:75796416-75796435 Msa1077220:CDS 25.0%
! GCATAATTAACATATATACC+TGG + chr7_2:75796501-75796520 None:intergenic 25.0%
!!! AATCTAAGAAAGTGTTCTTT+TGG + chr7_2:75796883-75796902 None:intergenic 25.0%
!!! CTTTCTCTCTTATTTTCTTT+TGG + chr7_2:75796912-75796931 None:intergenic 25.0%
! ATTAATTGATGTAGATTTGC+TGG - chr7_2:75797081-75797100 Msa1077220:intron 25.0%
! ACAAGACAACTATATACAAA+AGG + chr7_2:75797121-75797140 None:intergenic 25.0%
!!! TTTGAGTTCTATTTTCTACA+AGG - chr7_2:75797176-75797195 Msa1077220:intron 25.0%
! AGAAGAAAAATGATGAGATA+AGG + chr7_2:75797219-75797238 None:intergenic 25.0%
! ATCTTAAACGTAAAACTGAA+GGG + chr7_2:75797699-75797718 None:intergenic 25.0%
! TATCTTAAACGTAAAACTGA+AGG + chr7_2:75797700-75797719 None:intergenic 25.0%
! TTTCCTATATTTCATCATGA+GGG + chr7_2:75797948-75797967 None:intergenic 25.0%
!! TTTTCCTATATTTCATCATG+AGG + chr7_2:75797949-75797968 None:intergenic 25.0%
!!! TTTTATTTTTGTGTGTAACC+CGG - chr7_2:75798036-75798055 Msa1077220:intron 25.0%
!!! TCTTACTTTTTATTTTACCC+GGG + chr7_2:75798057-75798076 None:intergenic 25.0%
!!! CTCTTACTTTTTATTTTACC+CGG + chr7_2:75798058-75798077 None:intergenic 25.0%
! AAAAAAATTGAAGGAAGGTA+TGG - chr7_2:75798123-75798142 Msa1077220:intron 25.0%
! TTTATGAGAAATTCTTGTGT+AGG - chr7_2:75798171-75798190 Msa1077220:intron 25.0%
! TGTTTGTAAGAATGATAGTT+AGG + chr7_2:75798203-75798222 None:intergenic 25.0%
! AGAATACTAACTGCAAATAA+TGG - chr7_2:75798278-75798297 Msa1077220:intron 25.0%
! AAAAAGAGAAATTCTTGTGT+AGG + chr7_2:75798427-75798446 None:intergenic 25.0%
!!! CTCTTTTTTTATATACGTAC+GGG - chr7_2:75798439-75798458 Msa1077220:intron 25.0%
! GAAATGAGATAATAGTAAGA+AGG - chr7_2:75798527-75798546 Msa1077220:intron 25.0%
! TTCAAAATTTGTAACCACTA+TGG - chr7_2:75798626-75798645 Msa1077220:intron 25.0%
! AATACATAAAAACTCACCTT+AGG + chr7_2:75799187-75799206 None:intergenic 25.0%
! ATAATATCATCCATCTTCTA+TGG - chr7_2:75799470-75799489 Msa1077220:intron 25.0%
! CTATGGATAAAGAAGAAAAA+AGG - chr7_2:75799487-75799506 Msa1077220:intron 25.0%
! AAGTTCTATTAGTTAGTTGT+TGG - chr7_2:75799671-75799690 Msa1077220:intron 25.0%
! TAAAAATTCATTCGTATTGG+TGG - chr7_2:75799700-75799719 Msa1077220:intron 25.0%
!! AAAAGGTTACCTTAATTTGA+TGG - chr7_2:75799966-75799985 Msa1077220:intron 25.0%
! AGATCCAAATAATAATAGCA+CGG - chr7_2:75800358-75800377 Msa1077220:five_prime_UTR 25.0%
GAGAGAGTTAATCACTTAAT+TGG + chr7_2:75796167-75796186 None:intergenic 30.0%
TTCAAGGAATGAAAGAGAAA+AGG + chr7_2:75796271-75796290 None:intergenic 30.0%
ACAAATGAGGAAGTTCTTAA+GGG - chr7_2:75796429-75796448 Msa1077220:CDS 30.0%
!!! AATAACCTATGTTTTGAGGT+TGG + chr7_2:75796722-75796741 None:intergenic 30.0%
! GTGAAATAACCTATGTTTTG+AGG + chr7_2:75796726-75796745 None:intergenic 30.0%
! CTGCCATATTTTGCTAAATA+TGG - chr7_2:75796846-75796865 Msa1077220:intron 30.0%
!!! CTCTTATTTTCTTTTGGTTG+TGG + chr7_2:75796906-75796925 None:intergenic 30.0%
ACAAGAAAAATAGAAAGGGA+TGG - chr7_2:75796946-75796965 Msa1077220:intron 30.0%
AAAAATAGAAAGGGATGGAA+AGG - chr7_2:75796951-75796970 Msa1077220:intron 30.0%
! ACTTTGTATTTTACCGCAAA+AGG + chr7_2:75797293-75797312 None:intergenic 30.0%
TAGAGAGTCATATCAAAGAA+AGG + chr7_2:75797865-75797884 None:intergenic 30.0%
TTCCTATATTTCATCATGAG+GGG + chr7_2:75797947-75797966 None:intergenic 30.0%
!!! TTTATTTTTGTGTGTAACCC+GGG - chr7_2:75798037-75798056 Msa1077220:intron 30.0%
! TTTCTTTTAACCATGATTGG+TGG - chr7_2:75798252-75798271 Msa1077220:intron 30.0%
ATACTAACTGCAAATAATGG+TGG - chr7_2:75798281-75798300 Msa1077220:intron 30.0%
GTTTGTAAGAATGATACGTT+AGG - chr7_2:75798395-75798414 Msa1077220:intron 30.0%
TGAGATAATAGTAAGAAGGA+AGG - chr7_2:75798531-75798550 Msa1077220:intron 30.0%
GTTGTTGTCTATATAGTTGT+TGG - chr7_2:75798836-75798855 Msa1077220:intron 30.0%
GCATGAAATTAACACATGAT+GGG + chr7_2:75798893-75798912 None:intergenic 30.0%
TGCATGAAATTAACACATGA+TGG + chr7_2:75798894-75798913 None:intergenic 30.0%
CAAAGCTTAATGCAAATGAA+TGG - chr7_2:75798930-75798949 Msa1077220:intron 30.0%
! AATGGTATTTCTTTAGCTTC+CGG - chr7_2:75798948-75798967 Msa1077220:intron 30.0%
TAAATCCAGTTGCATATTTG+CGG + chr7_2:75798976-75798995 None:intergenic 30.0%
TCTTCTTTATCCATAGAAGA+TGG + chr7_2:75799483-75799502 None:intergenic 30.0%
ACATCAAGAATGAAACATGA+AGG - chr7_2:75799549-75799568 Msa1077220:intron 30.0%
CATCAAGAATGAAACATGAA+GGG - chr7_2:75799550-75799569 Msa1077220:intron 30.0%
! CTAATGCCAATTTTGTGTAA+GGG - chr7_2:75799733-75799752 Msa1077220:intron 30.0%
! TAATGCCAATTTTGTGTAAG+GGG - chr7_2:75799734-75799753 Msa1077220:intron 30.0%
AAATACACGCCATCAAATTA+AGG + chr7_2:75799978-75799997 None:intergenic 30.0%
!!! AATTTGATGGCGTGTATTTT+TGG - chr7_2:75799979-75799998 Msa1077220:intron 30.0%
! GTCAAATTTTTGTTGATCAC+AGG - chr7_2:75800064-75800083 Msa1077220:intron 30.0%
! AAATTTTTGTTGATCACAGG+AGG - chr7_2:75800067-75800086 Msa1077220:intron 30.0%
AGATGATGACATCAAAGTTA+GGG + chr7_2:75800201-75800220 None:intergenic 30.0%
!! AAATGATGAAGTGTTGTCAT+GGG + chr7_2:75800281-75800300 None:intergenic 30.0%
!! TAAATGATGAAGTGTTGTCA+TGG + chr7_2:75800282-75800301 None:intergenic 30.0%
!!! ATGGAAGAATTGTTTTGGTT+TGG + chr7_2:75800308-75800327 None:intergenic 30.0%
! TCATCATGGAAGAATTGTTT+TGG + chr7_2:75800313-75800332 None:intergenic 30.0%
ATATTGAAGGAGATTCATCA+TGG + chr7_2:75800327-75800346 None:intergenic 30.0%
! GTAACCGTGCTATTATTATT+TGG + chr7_2:75800365-75800384 None:intergenic 30.0%
GTTACTCAAATTAGTTCCAA+AGG - chr7_2:75800380-75800399 Msa1077220:five_prime_UTR 30.0%
!! TGAGGTTGATAATGATAATG+TGG - chr7_2:75800493-75800512 Msa1077220:five_prime_UTR 30.0%
CTTGGATAAAATCGAAATCC+AGG + chr7_2:75796369-75796388 None:intergenic 35.0%
! TCGATTTTATCCAAGTGATG+AGG - chr7_2:75796374-75796393 Msa1077220:CDS 35.0%
TTATCCAAGTGATGAGGAAT+TGG - chr7_2:75796380-75796399 Msa1077220:CDS 35.0%
CACAAATGAGGAAGTTCTTA+AGG - chr7_2:75796428-75796447 Msa1077220:CDS 35.0%
GTACGAAAGACACAAACAAA+AGG + chr7_2:75796684-75796703 None:intergenic 35.0%
GAATACCAACCTCAAAACAT+AGG - chr7_2:75796714-75796733 Msa1077220:intron 35.0%
AACAACTAGAGACAGAACAA+AGG + chr7_2:75796787-75796806 None:intergenic 35.0%
TTGTCAGATCAAGTTCATGA+AGG + chr7_2:75796820-75796839 None:intergenic 35.0%
!!! TTTTTTGAAGGGGCAATGAT+TGG + chr7_2:75797494-75797513 None:intergenic 35.0%
AAAATCCAATCATTGCAGCA+AGG - chr7_2:75797515-75797534 Msa1077220:CDS 35.0%
ATCAACACTGCTGTCTTTAA+CGG - chr7_2:75797790-75797809 Msa1077220:intron 35.0%
TAGCAAATACTTCCCTAACT+TGG - chr7_2:75798592-75798611 Msa1077220:intron 35.0%
TTTCATGACATCAACCATAG+TGG + chr7_2:75798643-75798662 None:intergenic 35.0%
TGTCATGAAACACTAGTATG+TGG - chr7_2:75798653-75798672 Msa1077220:intron 35.0%
CACTAGTATGTGGTAAGATT+TGG - chr7_2:75798663-75798682 Msa1077220:intron 35.0%
GTCATATGTCTATTGTGTGT+TGG + chr7_2:75798734-75798753 None:intergenic 35.0%
AACAACACGTGACTAAGTTA+AGG + chr7_2:75798822-75798841 None:intergenic 35.0%
! ATGGTATTTCTTTAGCTTCC+GGG - chr7_2:75798949-75798968 Msa1077220:intron 35.0%
ACAAACAGAGCAACTATATC+TGG - chr7_2:75798998-75799017 Msa1077220:intron 35.0%
GAGCAACTATATCTGGATAT+TGG - chr7_2:75799005-75799024 Msa1077220:intron 35.0%
! GAAAGACATTGGTGTTCTAT+AGG - chr7_2:75799089-75799108 Msa1077220:intron 35.0%
TATAGGAATAGAGCTCCAAA+TGG - chr7_2:75799106-75799125 Msa1077220:intron 35.0%
CTCCAAATGGTATCAAAACA+GGG - chr7_2:75799119-75799138 Msa1077220:intron 35.0%
ACATAAAAACTCACCTTAGG+AGG + chr7_2:75799184-75799203 None:intergenic 35.0%
ACCACATTGGCAAAATGATA+GGG + chr7_2:75799211-75799230 None:intergenic 35.0%
! GCTAATGCCAATTTTGTGTA+AGG - chr7_2:75799732-75799751 Msa1077220:intron 35.0%
ATGAACCCCTTACACAAAAT+TGG + chr7_2:75799742-75799761 None:intergenic 35.0%
GAATTGTTGTGTGTTGAGTT+TGG + chr7_2:75800156-75800175 None:intergenic 35.0%
GAGATGATGACATCAAAGTT+AGG + chr7_2:75800202-75800221 None:intergenic 35.0%
!! CAAGTTTGTTATAGCCACTA+GGG + chr7_2:75800244-75800263 None:intergenic 35.0%
!! TCAAGTTTGTTATAGCCACT+AGG + chr7_2:75800245-75800264 None:intergenic 35.0%
!! AATGATGAAGTGTTGTCATG+GGG + chr7_2:75800280-75800299 None:intergenic 35.0%
CTGTTTCACGAGAATATTGA+AGG + chr7_2:75800340-75800359 None:intergenic 35.0%
ATTAGTTCCAAAGGTGATGA+TGG - chr7_2:75800389-75800408 Msa1077220:five_prime_UTR 35.0%
!! ATGATGGATATGGATTCTTG+TGG - chr7_2:75800405-75800424 Msa1077220:five_prime_UTR 35.0%
ATATGGATTCTTGTGGAACA+TGG - chr7_2:75800412-75800431 Msa1077220:five_prime_UTR 35.0%
ATTCTTGTGGAACATGGATT+TGG - chr7_2:75800418-75800437 Msa1077220:five_prime_UTR 35.0%
GAAGAAAATAGCCTAGAAGA+TGG - chr7_2:75800440-75800459 Msa1077220:five_prime_UTR 35.0%
CTTGGATGCAATAAGATTTG+AGG - chr7_2:75800475-75800494 Msa1077220:five_prime_UTR 35.0%
GGATAAAATCGAAATCCAGG+AGG + chr7_2:75796366-75796385 None:intergenic 40.0%
ACCTTCACATATGTGAACCA+TGG - chr7_2:75796469-75796488 Msa1077220:CDS 40.0%
GTCCCCTCATGATGAAATAT+AGG - chr7_2:75797942-75797961 Msa1077220:intron 40.0%
! CTTTTAACCATGATTGGTGG+TGG - chr7_2:75798255-75798274 Msa1077220:intron 40.0%
CAAATACTTCCCTAACTTGG+AGG - chr7_2:75798595-75798614 Msa1077220:intron 40.0%
AGTTTCAAGCCTCCAAGTTA+GGG + chr7_2:75798607-75798626 None:intergenic 40.0%
AAGTTTCAAGCCTCCAAGTT+AGG + chr7_2:75798608-75798627 None:intergenic 40.0%
GACTAAGTTAAGGTAAGGTC+AGG + chr7_2:75798812-75798831 None:intergenic 40.0%
CACGTGACTAAGTTAAGGTA+AGG + chr7_2:75798817-75798836 None:intergenic 40.0%
ATTTCATGCATTGCATGCAG+AGG - chr7_2:75798904-75798923 Msa1077220:intron 40.0%
TCTGGATATTGGAAAGCAAC+TGG - chr7_2:75799016-75799035 Msa1077220:intron 40.0%
CTGGATATTGGAAAGCAACT+GGG - chr7_2:75799017-75799036 Msa1077220:intron 40.0%
GTTAGATCCAATCACACAAG+AGG - chr7_2:75799054-75799073 Msa1077220:intron 40.0%
CAATCACACAAGAGGTTGTA+GGG - chr7_2:75799062-75799081 Msa1077220:intron 40.0%
TGTAGGGATGAGAAAGACAT+TGG - chr7_2:75799078-75799097 Msa1077220:intron 40.0%
GCTCCAAATGGTATCAAAAC+AGG - chr7_2:75799118-75799137 Msa1077220:intron 40.0%
!!! CACCCTGTTTTGATACCATT+TGG + chr7_2:75799124-75799143 None:intergenic 40.0%
CAAATGGTATCAAAACAGGG+TGG - chr7_2:75799122-75799141 Msa1077220:intron 40.0%
CACCACATTGGCAAAATGAT+AGG + chr7_2:75799212-75799231 None:intergenic 40.0%
AAAACGTAGTTGCACCACAT+TGG + chr7_2:75799224-75799243 None:intergenic 40.0%
TTGTGTAAGGGGTTCATAGT+TGG - chr7_2:75799745-75799764 Msa1077220:intron 40.0%
GTGTCAAAAGAAGACGACTA+CGG + chr7_2:75799845-75799864 None:intergenic 40.0%
GATGACATCAAAGTTAGGGA+TGG + chr7_2:75800197-75800216 None:intergenic 40.0%
!! GGGATGGTTTGGTAATTTGT+TGG + chr7_2:75800224-75800243 None:intergenic 40.0%
AATTACCAAACCATCCCTAG+TGG - chr7_2:75800227-75800246 Msa1077220:CDS 40.0%
! TTTGTTATAGCCACTAGGGA+TGG + chr7_2:75800240-75800259 None:intergenic 40.0%
!! ATGATGAAGTGTTGTCATGG+GGG + chr7_2:75800279-75800298 None:intergenic 40.0%
!! TCCAAAGGTGATGATGGATA+TGG - chr7_2:75800395-75800414 Msa1077220:five_prime_UTR 40.0%
TCCATATCCATCATCACCTT+TGG + chr7_2:75800399-75800418 None:intergenic 40.0%
AAATAGCCTAGAAGATGGTG+TGG - chr7_2:75800445-75800464 Msa1077220:five_prime_UTR 40.0%
CTCTCAAACCCATGACTCAA+AGG + chr7_2:75796326-75796345 None:intergenic 45.0%
GTCATGGGTTTGAGAGACAT+AGG - chr7_2:75796330-75796349 Msa1077220:CDS 45.0%
CACACCAATTCCTCATCACT+TGG + chr7_2:75796387-75796406 None:intergenic 45.0%
GCCATGGTTCACATATGTGA+AGG + chr7_2:75796473-75796492 None:intergenic 45.0%
TATATACCTGGAAGCTGCCA+TGG + chr7_2:75796489-75796508 None:intergenic 45.0%
GAAAGGGATGGAAAGGTAAG+AGG - chr7_2:75796958-75796977 Msa1077220:intron 45.0%
GGATGGAAAGGTAAGAGGAA+GGG - chr7_2:75796963-75796982 Msa1077220:intron 45.0%
! GTCATGAGCTTTGTAGCATG+AGG + chr7_2:75797459-75797478 None:intergenic 45.0%
GGAATCCTTGCTGCAATGAT+TGG + chr7_2:75797523-75797542 None:intergenic 45.0%
GTATTCTCCACCACCAATCA+TGG + chr7_2:75798265-75798284 None:intergenic 45.0%
! GCAAATAATGGTGGAGAGAG+AGG - chr7_2:75798290-75798309 Msa1077220:intron 45.0%
! AATAATGGTGGAGAGAGAGG+AGG - chr7_2:75798293-75798312 Msa1077220:intron 45.0%
AGCAACTGGGAAAGATCGTA+TGG - chr7_2:75799030-75799049 Msa1077220:intron 45.0%
CCTACAACCTCTTGTGTGAT+TGG + chr7_2:75799064-75799083 None:intergenic 45.0%
CCAATCACACAAGAGGTTGT+AGG - chr7_2:75799061-75799080 Msa1077220:intron 45.0%
! GCCCTATCATTTTGCCAATG+TGG - chr7_2:75799207-75799226 Msa1077220:intron 45.0%
! TGTTCTTTGTTGCTTGACCG+TGG - chr7_2:75799812-75799831 Msa1077220:intron 45.0%
ACGACTACGGTTTACAACCA+CGG + chr7_2:75799832-75799851 None:intergenic 45.0%
! GTCGTCTTCTTTTGACACGT+CGG - chr7_2:75799847-75799866 Msa1077220:intron 45.0%
TTTGTTGATCACAGGAGGAC+TGG - chr7_2:75800072-75800091 Msa1077220:intron 45.0%
TTGTTGATCACAGGAGGACT+GGG - chr7_2:75800073-75800092 Msa1077220:intron 45.0%
GACATCAAAGTTAGGGATGG+AGG + chr7_2:75800194-75800213 None:intergenic 45.0%
TATAGCCACTAGGGATGGTT+TGG + chr7_2:75800235-75800254 None:intergenic 45.0%
!! ATTAATAAAATTAAAAAGAA+AGG + chr7_2:75796297-75796316 None:intergenic 5.0%
!! TAAGAAATTAATATAATAAA+GGG + chr7_2:75797671-75797690 None:intergenic 5.0%
!! ATAAGAAATTAATATAATAA+AGG + chr7_2:75797672-75797691 None:intergenic 5.0%
!!! CAATTTTTTTTTTTTTTTTA+TGG + chr7_2:75798113-75798132 None:intergenic 5.0%
!! AAAAAAAAAAAAAAAATTGA+AGG - chr7_2:75798114-75798133 Msa1077220:intron 5.0%
!!! TGTTTTATTTTAAAATAATT+TGG + chr7_2:75798350-75798369 None:intergenic 5.0%
ATAGGAGCTTCACTACCTCC+TGG - chr7_2:75796348-75796367 Msa1077220:CDS 50.0%
GGGATGGAAAGGTAAGAGGA+AGG - chr7_2:75796962-75796981 Msa1077220:intron 50.0%
TCATGCATTGCATGCAGAGG+TGG - chr7_2:75798907-75798926 Msa1077220:intron 50.0%
CAGTTGCATATTTGCGGTCC+CGG + chr7_2:75798970-75798989 None:intergenic 50.0%
CCAATGCTCAGACAAGCAAG+CGG + chr7_2:75799780-75799799 None:intergenic 50.0%
!!! TGGCGTGTATTTTTGGCGTG+AGG - chr7_2:75799986-75800005 Msa1077220:intron 50.0%
CTGAAGCCACACCATCTTCT+AGG + chr7_2:75800454-75800473 None:intergenic 50.0%
AGATGGTGTGGCTTCAGACT+TGG - chr7_2:75800457-75800476 Msa1077220:five_prime_UTR 50.0%
TGTGAACCATGGCAGCTTCC+AGG - chr7_2:75796480-75796499 Msa1077220:CDS 55.0%
CGGGACCGCAAATATGCAAC+TGG - chr7_2:75798968-75798987 Msa1077220:intron 55.0%
GACACCACACATGCCTCCTA+AGG - chr7_2:75799168-75799187 Msa1077220:intron 55.0%
! CTCACCTTAGGAGGCATGTG+TGG + chr7_2:75799175-75799194 None:intergenic 55.0%
CCGCTTGCTTGTCTGAGCAT+TGG - chr7_2:75799777-75799796 Msa1077220:intron 55.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 75796162 75800526 75796162 ID=Msa1077220;Name=Msa1077220
chr7_2 mRNA 75796162 75800526 75796162 ID=Msa1077220-mRNA-1;Parent=Msa1077220;Name=Msa1077220-mRNA-1;_AED=0.01;_eAED=0.01;_QI=171|1|0.66|1|1|1|3|0|291
chr7_2 exon 75796162 75796602 75796162 ID=Msa1077220-mRNA-1:exon:18151;Parent=Msa1077220-mRNA-1
chr7_2 exon 75797499 75797764 75797499 ID=Msa1077220-mRNA-1:exon:18150;Parent=Msa1077220-mRNA-1
chr7_2 exon 75800187 75800526 75800187 ID=Msa1077220-mRNA-1:exon:18149;Parent=Msa1077220-mRNA-1
chr7_2 five_prime_UTR 75800356 75800526 75800356 ID=Msa1077220-mRNA-1:five_prime_utr;Parent=Msa1077220-mRNA-1
chr7_2 CDS 75800187 75800355 75800187 ID=Msa1077220-mRNA-1:cds;Parent=Msa1077220-mRNA-1
chr7_2 CDS 75797499 75797764 75797499 ID=Msa1077220-mRNA-1:cds;Parent=Msa1077220-mRNA-1
chr7_2 CDS 75796162 75796602 75796162 ID=Msa1077220-mRNA-1:cds;Parent=Msa1077220-mRNA-1
Gene Sequence

>Msa1077220

ATGGGTTTGAGAGACATAGGAGCTTCACTACCTCCTGGATTTCGATTTTATCCAAGTGATGAGGAATTGGTGTGTCACTATCTTTACAAAAAGATCACAAATGAGGAAGTTCTTAAGGGTACTTTGATTGAAATTGACCTTCACATATGTGAACCATGGCAGCTTCCAGAGGTGGCAAAGCTTAATGCAAATGAATGGTATTTCTTTAGCTTCCGGGACCGCAAATATGCAACTGGATTTAGAACAAACAGAGCAACTATATCTGGATATTGGAAAGCAACTGGGAAAGATCGTATGGTGTTAGATCCAATCACACAAGAGGTTGTAGGGATGAGAAAGACATTGGTGTTCTATAGGAATAGAGCTCCAAATGGTATCAAAACAGGGTGGATTATGCATGAATTTCGCTTAGAGACACCACACATGCCTCCTAAGGAGGACTGGGTATTGTGTAGAGTCTTTCACAAAAGCAAAGAAGAGAACAACAACAACAATAATAGTTCCAAACTCAACACACAACAATTCATGTATGAGACAACACCTCCATCCCTAACTTTGATGTCATCATCTCCAACAAATTACCAAACCATCCCTAGTGGCTATAACAAACTTGATTCTTTTTCTTCCCCCATGACAACACTTCATCATTTAAATCCAAACCAAAACAATTCTTCCATGATGAATCTCCTTCAATATTCTCGTGAAACAGATCCAAATAATAATAGCACGGTTACTCAAATTAGTTCCAAAGGTGATGATGGATATGGATTCTTGTGGAACATGGATTTGGAAGAAAATAGCCTAGAAGATGGTGTGGCTTCAGACTTGGATGCAATAAGATTTGAGGTTGATAATGATAATGTGGTCTTACTATAA
Protein sequence

>Msa1077220

MGLRDIGASLPPGFRFYPSDEELVCHYLYKKITNEEVLKGTLIEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATISGYWKATGKDRMVLDPITQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKEENNNNNNSSKLNTQQFMYETTPPSLTLMSSSPTNYQTIPSGYNKLDSFSSPMTTLHHLNPNQNNSSMMNLLQYSRETDPNNNSTVTQISSKGDDGYGFLWNMDLEENSLEDGVASDLDAIRFEVDNDNVVLL*