AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1115220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1115220 MtrunA17_Chr7g0261411 98.282 291 5 0 1 291 1 291 0.0 601
Msa1115220 MtrunA17_Chr1g0183741 76.451 293 49 8 1 291 1 275 1.46e-157 440
Msa1115220 MtrunA17_Chr2g0312321 62.893 159 50 3 6 159 7 161 2.04e-69 217
Msa1115220 MtrunA17_Chr3g0139331 43.426 251 124 5 9 246 10 255 4.64e-63 202
Msa1115220 MtrunA17_Chr2g0316971 56.250 160 64 1 8 161 21 180 1.58e-59 194
Msa1115220 MtrunA17_Chr1g0147421 47.549 204 99 3 2 197 19 222 3.96e-59 192
Msa1115220 MtrunA17_Chr4g0060931 55.844 154 60 3 10 157 17 168 3.14e-57 187
Msa1115220 MtrunA17_Chr6g0484441 56.000 150 62 2 10 157 5 152 6.24e-56 183
Msa1115220 MtrunA17_Chr6g0453451 47.236 199 81 5 10 196 20 206 7.32e-56 183
Msa1115220 MtrunA17_Chr5g0405211 55.195 154 62 4 8 156 6 157 1.37e-55 183
Msa1115220 MtrunA17_Chr3g0091921 46.890 209 99 6 10 211 16 219 1.58e-55 181
Msa1115220 MtrunA17_Chr7g0253011 56.129 155 60 3 10 156 17 171 2.00e-55 183
Msa1115220 MtrunA17_Chr4g0018391 43.379 219 110 5 8 216 5 219 1.29e-54 180
Msa1115220 MtrunA17_Chr6g0461661 53.503 157 67 2 10 160 18 174 3.52e-54 180
Msa1115220 MtrunA17_Chr1g0200561 52.866 157 67 4 5 156 14 168 4.31e-54 179
Msa1115220 MtrunA17_Chr4g0056541 41.597 238 109 8 8 231 5 226 8.67e-54 179
Msa1115220 MtrunA17_Chr4g0017921 48.649 185 77 4 8 176 6 188 1.99e-53 177
Msa1115220 MtrunA17_Chr8g0372121 49.143 175 79 5 8 174 4 176 3.05e-53 176
Msa1115220 MtrunA17_Chr5g0398971 52.564 156 65 4 8 156 5 158 6.53e-53 176
Msa1115220 MtrunA17_Chr2g0309891 50.588 170 75 3 9 171 5 172 1.82e-52 175
Msa1115220 MtrunA17_Chr6g0481091 52.903 155 65 3 8 156 4 156 8.49e-52 170
Msa1115220 MtrunA17_Chr7g0252971 36.934 287 138 8 10 253 8 294 1.06e-51 172
Msa1115220 MtrunA17_Chr2g0318101 50.307 163 66 2 10 157 15 177 1.55e-51 172
Msa1115220 MtrunA17_Chr3g0144271 54.483 145 62 2 10 153 23 164 1.92e-51 174
Msa1115220 MtrunA17_Chr4g0047841 46.369 179 69 2 10 161 15 193 4.95e-51 171
Msa1115220 MtrunA17_Chr3g0109821 54.777 157 62 3 8 157 4 158 3.12e-50 176
Msa1115220 MtrunA17_Chr4g0042561 44.886 176 86 4 8 175 7 179 4.02e-50 166
Msa1115220 MtrunA17_Chr8g0384721 46.667 180 84 3 10 181 7 182 1.86e-49 165
Msa1115220 MtrunA17_Chr7g0217721 38.372 258 122 7 13 237 22 275 2.85e-49 167
Msa1115220 MtrunA17_Chr2g0309331 51.634 153 68 4 9 156 9 160 5.28e-49 166
Msa1115220 MtrunA17_Chr5g0433781 55.769 156 61 4 8 157 4 157 5.77e-49 172
Msa1115220 MtrunA17_Chr3g0130731 48.824 170 74 4 10 170 7 172 1.03e-48 163
Msa1115220 MtrunA17_Chr3g0124761 49.091 165 74 2 10 167 7 168 1.12e-48 163
Msa1115220 MtrunA17_Chr7g0214071 50.000 156 73 2 10 163 15 167 1.16e-48 162
Msa1115220 MtrunA17_Chr7g0263931 35.739 291 137 7 10 276 11 275 2.53e-48 163
Msa1115220 MtrunA17_Chr5g0400461 49.123 171 79 4 7 169 3 173 4.97e-48 163
Msa1115220 MtrunA17_Chr5g0417791 46.452 155 73 2 10 156 3 155 5.52e-48 160
Msa1115220 MtrunA17_Chr2g0326361 43.000 200 101 3 9 195 13 212 1.13e-47 162
Msa1115220 MtrunA17_Chr2g0318081 48.171 164 75 3 1 156 3 164 3.26e-46 159
Msa1115220 MtrunA17_Chr8g0346001 40.741 189 94 3 8 180 13 199 3.40e-46 160
Msa1115220 MtrunA17_Chr8g0359921 48.701 154 71 2 9 156 13 164 6.69e-45 154
Msa1115220 MtrunA17_Chr7g0217711 52.756 127 58 1 12 138 21 145 2.14e-44 149
Msa1115220 MtrunA17_Chr8g0361731 40.828 169 87 1 2 157 6 174 9.50e-44 153
Msa1115220 MtrunA17_Chr3g0092671 50.000 152 68 4 12 157 7 156 2.39e-43 155
Msa1115220 MtrunA17_Chr4g0054791 48.148 162 73 4 7 159 3 162 1.79e-42 148
Msa1115220 MtrunA17_Chr5g0417001 41.772 158 80 1 12 157 16 173 4.10e-42 149
Msa1115220 MtrunA17_Chr1g0197351 47.500 160 70 3 9 156 41 198 4.61e-42 150
Msa1115220 MtrunA17_Chr6g0453131 42.857 161 78 3 10 157 15 174 3.23e-41 146
Msa1115220 MtrunA17_Chr1g0197361 50.000 152 68 5 12 157 10 159 1.78e-40 148
Msa1115220 MtrunA17_Chr3g0128111 41.622 185 98 4 13 189 45 227 1.18e-39 139
Msa1115220 MtrunA17_Chr4g0076731 46.104 154 78 3 12 162 56 207 1.80e-39 143
Msa1115220 MtrunA17_Chr3g0130101 45.695 151 74 3 12 156 9 157 4.15e-39 140
Msa1115220 MtrunA17_Chr5g0428991 48.077 156 73 3 10 159 25 178 7.92e-39 144
Msa1115220 MtrunA17_Chr3g0128151 46.497 157 76 3 9 159 21 175 1.63e-38 142
Msa1115220 MtrunA17_Chr8g0364791 43.137 153 79 3 10 156 6 156 2.68e-37 137
Msa1115220 MtrunA17_Chr5g0442771 40.881 159 80 2 12 156 20 178 5.80e-37 133
Msa1115220 MtrunA17_Chr4g0038751 42.953 149 79 3 12 157 17 162 1.17e-36 132
Msa1115220 MtrunA17_Chr1g0201021 45.395 152 75 3 12 157 21 170 2.71e-36 136
Msa1115220 MtrunA17_Chr8g0345671 46.259 147 74 4 10 153 11 155 3.39e-36 133
Msa1115220 MtrunA17_Chr2g0311651 42.331 163 76 4 12 156 24 186 7.21e-35 128
Msa1115220 MtrunA17_Chr2g0311661 40.244 164 80 3 12 157 23 186 1.28e-34 127
Msa1115220 MtrunA17_Chr8g0384201 41.176 153 82 3 10 156 6 156 1.45e-34 130
Msa1115220 MtrunA17_Chr8g0385991 41.290 155 80 3 8 153 12 164 1.94e-34 124
Msa1115220 MtrunA17_Chr8g0345691 43.537 147 78 4 10 153 12 156 2.16e-33 126
Msa1115220 MtrunA17_Chr3g0131911 41.718 163 81 3 8 158 12 172 5.74e-33 121
Msa1115220 MtrunA17_Chr3g0113001 38.571 210 103 10 43 237 1 199 4.89e-32 120
Msa1115220 MtrunA17_Chr2g0321631 41.401 157 78 5 11 154 5 160 1.80e-31 117
Msa1115220 MtrunA17_Chr4g0050701 34.831 178 96 3 10 176 11 179 2.44e-31 115
Msa1115220 MtrunA17_Chr4g0026141 38.365 159 81 5 10 154 5 160 2.13e-30 115
Msa1115220 MtrunA17_Chr7g0266701 35.976 164 89 5 10 158 4 166 2.04e-28 109
Msa1115220 MtrunA17_Chr8g0345711 42.857 133 72 3 6 135 8 139 1.57e-27 105
Msa1115220 MtrunA17_Chr8g0345701 38.514 148 71 5 5 135 2 146 2.23e-26 102
Msa1115220 MtrunA17_Chr8g0345721 36.095 169 70 4 4 135 24 191 3.13e-26 102
Msa1115220 MtrunA17_Chr7g0243371 53.086 81 38 0 64 144 18 98 1.10e-24 95.9
Msa1115220 MtrunA17_Chr2g0321741 40.411 146 78 5 30 171 12 152 2.43e-24 100
Msa1115220 MtrunA17_Chr3g0113031 37.778 180 90 7 73 237 3 175 2.61e-24 99.0
Msa1115220 MtrunA17_Chr8g0345731 40.458 131 73 3 10 135 24 154 1.29e-23 94.7
Msa1115220 MtrunA17_Chr8g0384351 37.500 152 77 5 8 159 8 141 8.70e-22 90.1
Msa1115220 MtrunA17_Chr8g0345741 33.962 159 96 4 21 176 2 154 2.69e-21 88.2
Msa1115220 MtrunA17_Chr7g0251671 33.553 152 85 5 1 145 1 143 1.50e-16 75.5
Msa1115220 MtrunA17_Chr3g0130321 29.545 176 82 6 8 158 5 163 1.56e-16 76.6
Msa1115220 MtrunA17_Chr7g0251651 30.968 155 86 6 7 158 15 151 1.73e-16 76.3
Msa1115220 MtrunA17_Chr7g0251661 29.932 147 97 4 1 145 1 143 3.83e-14 68.9
Msa1115220 MtrunA17_Chr2g0282871 29.480 173 103 6 9 165 52 221 6.54e-13 67.8
Msa1115220 MtrunA17_Chr3g0113011 50.000 48 24 0 9 56 18 65 2.85e-12 61.2
Msa1115220 MtrunA17_Chr5g0422431 28.994 169 96 7 9 159 57 219 2.02e-11 63.9
Msa1115220 MtrunA17_Chr4g0046431 28.977 176 106 6 9 168 67 239 2.06e-11 63.5
Msa1115220 MtrunA17_Chr1g0168571 29.861 144 90 6 18 152 13 154 8.12e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1115220 AT4G28530.1 73.143 175 31 2 1 159 1 175 3.46e-93 280
Msa1115220 AT1G56010.2 47.009 234 100 5 6 231 15 232 1.73e-64 205
Msa1115220 AT3G12977.1 57.051 156 60 3 6 156 14 167 1.76e-61 196
Msa1115220 AT1G76420.1 56.688 157 65 1 9 162 21 177 2.66e-61 197
Msa1115220 AT2G24430.2 54.902 153 66 1 9 158 15 167 2.54e-60 194
Msa1115220 AT2G24430.1 54.902 153 66 1 9 158 15 167 2.54e-60 194
Msa1115220 AT4G28530.2 54.286 175 27 3 1 159 1 138 1.23e-58 190
Msa1115220 AT5G53950.1 55.844 154 62 1 10 157 17 170 3.66e-58 191
Msa1115220 AT3G18400.1 56.291 151 61 3 10 157 5 153 4.80e-58 189
Msa1115220 AT5G61430.1 57.143 154 58 3 10 157 16 167 4.84e-58 189
Msa1115220 AT5G07680.2 56.494 154 59 3 10 157 3 154 6.53e-58 188
Msa1115220 AT5G07680.1 56.494 154 59 3 10 157 17 168 9.78e-58 188
Msa1115220 AT4G36160.1 48.718 195 90 6 5 194 5 194 1.91e-56 186
Msa1115220 AT4G36160.3 48.718 195 90 6 5 194 5 194 1.91e-56 186
Msa1115220 AT4G36160.2 48.718 195 90 6 5 194 9 198 2.16e-56 186
Msa1115220 AT2G18060.3 46.875 192 92 5 8 194 7 193 1.27e-55 184
Msa1115220 AT2G18060.1 46.875 192 92 5 8 194 7 193 1.27e-55 184
Msa1115220 AT3G15170.1 50.617 162 74 1 10 165 20 181 2.34e-55 181
Msa1115220 AT5G39610.1 55.556 153 60 3 10 156 20 170 2.77e-55 181
Msa1115220 AT1G71930.2 41.975 243 111 6 6 243 5 222 5.66e-55 181
Msa1115220 AT1G71930.1 41.975 243 111 6 6 243 5 222 5.66e-55 181
Msa1115220 AT5G18270.1 55.556 153 61 3 10 156 21 172 1.44e-54 180
Msa1115220 AT5G18270.2 55.556 153 61 3 10 156 21 172 1.84e-54 180
Msa1115220 AT3G29035.1 48.936 188 74 4 10 191 24 195 3.51e-54 179
Msa1115220 AT1G12260.2 53.247 154 65 3 8 156 5 156 6.38e-54 179
Msa1115220 AT3G04060.1 54.902 153 62 3 10 156 20 171 7.68e-54 178
Msa1115220 AT1G12260.1 53.247 154 65 3 8 156 5 156 9.09e-54 180
Msa1115220 AT4G10350.1 46.535 202 82 6 8 185 7 206 9.43e-54 178
Msa1115220 AT5G66300.1 52.830 159 67 4 4 156 6 162 1.45e-53 176
Msa1115220 AT3G04070.2 47.368 171 76 2 1 157 1 171 3.99e-53 177
Msa1115220 AT1G33280.1 49.727 183 81 5 8 181 6 186 4.89e-53 175
Msa1115220 AT1G62700.1 52.597 154 66 3 8 156 5 156 1.52e-52 177
Msa1115220 AT1G62700.2 52.597 154 66 3 8 156 5 156 1.52e-52 177
Msa1115220 AT5G62380.2 52.147 163 71 4 8 165 5 165 1.82e-51 172
Msa1115220 AT5G62380.1 52.147 163 71 4 8 165 5 165 1.82e-51 172
Msa1115220 AT3G03200.1 53.846 156 63 3 8 156 4 157 2.45e-51 176
Msa1115220 AT3G17730.1 52.258 155 66 3 8 156 4 156 4.26e-51 169
Msa1115220 AT5G17260.1 52.564 156 65 3 8 156 4 157 6.75e-51 174
Msa1115220 AT3G04070.1 43.316 187 76 2 1 157 1 187 1.13e-50 171
Msa1115220 AT1G54330.1 55.629 151 62 3 9 156 5 153 5.30e-50 167
Msa1115220 AT3G15510.1 41.117 197 100 3 14 195 21 216 5.08e-49 167
Msa1115220 AT1G79580.3 51.974 152 68 3 9 156 16 166 1.22e-48 166
Msa1115220 AT1G79580.5 51.974 152 68 3 9 156 16 166 1.22e-48 166
Msa1115220 AT1G79580.4 51.974 152 68 3 9 156 16 166 1.22e-48 166
Msa1115220 AT1G79580.2 51.974 152 68 3 9 156 16 166 1.22e-48 166
Msa1115220 AT1G79580.1 51.974 152 68 3 9 156 16 166 1.22e-48 166
Msa1115220 AT1G61110.1 47.486 179 74 4 1 160 4 181 1.64e-48 164
Msa1115220 AT1G65910.1 53.125 160 67 3 8 161 4 161 3.14e-48 170
Msa1115220 AT1G01720.1 43.590 195 97 3 10 196 7 196 3.28e-48 162
Msa1115220 AT1G32770.1 45.181 166 72 3 8 156 14 177 6.28e-48 164
Msa1115220 AT5G08790.1 43.750 192 96 2 10 192 7 195 9.28e-48 161
Msa1115220 AT3G61910.1 41.463 205 96 4 8 190 9 211 4.55e-47 160
Msa1115220 AT1G69490.1 46.497 157 74 2 8 156 7 161 6.47e-47 158
Msa1115220 AT1G52890.1 46.199 171 86 2 9 175 13 181 6.72e-47 160
Msa1115220 AT2G46770.1 44.379 169 72 3 8 156 14 180 6.79e-47 161
Msa1115220 AT3G15500.1 48.780 164 74 3 1 156 1 162 1.13e-46 159
Msa1115220 AT4G27410.2 48.485 165 75 4 1 157 1 163 1.15e-46 159
Msa1115220 AT5G46590.1 41.784 213 109 5 8 213 4 208 1.98e-46 158
Msa1115220 AT5G63790.1 49.359 156 67 2 10 156 50 202 2.69e-46 158
Msa1115220 AT5G63790.2 49.359 156 67 2 10 156 60 212 3.14e-46 158
Msa1115220 AT3G10480.1 50.318 157 69 3 7 156 24 178 4.17e-46 161
Msa1115220 AT4G35580.1 45.050 202 101 4 9 202 8 207 4.38e-46 162
Msa1115220 AT4G35580.2 45.050 202 101 4 9 202 8 207 5.48e-46 162
Msa1115220 AT4G35580.3 45.050 202 101 4 9 202 8 207 5.98e-46 162
Msa1115220 AT3G10490.1 47.531 162 76 3 2 156 19 178 1.03e-45 154
Msa1115220 AT1G77450.1 48.428 159 70 3 7 156 5 160 1.13e-45 155
Msa1115220 AT5G04410.1 49.677 155 70 3 9 157 8 160 1.53e-45 162
Msa1115220 AT1G33060.1 39.044 251 137 6 9 246 23 270 2.72e-45 162
Msa1115220 AT1G33060.2 39.044 251 137 6 9 246 23 270 2.94e-45 162
Msa1115220 AT3G10480.2 51.282 156 68 4 7 156 24 177 5.71e-45 158
Msa1115220 AT3G10490.2 47.531 162 76 3 2 156 19 178 1.44e-44 157
Msa1115220 AT5G13180.1 35.484 248 138 4 10 253 14 243 5.13e-44 150
Msa1115220 AT3G10500.1 49.032 155 71 3 9 157 8 160 8.08e-44 157
Msa1115220 AT1G56010.1 46.961 181 73 4 58 231 1 165 2.03e-43 149
Msa1115220 AT5G39820.1 35.169 236 109 4 12 208 22 252 2.36e-43 151
Msa1115220 AT5G46590.2 40.385 208 108 4 8 213 4 197 3.07e-43 149
Msa1115220 AT4G27410.3 45.055 182 73 6 1 157 1 180 4.61e-43 150
Msa1115220 AT4G17980.1 48.428 159 70 3 8 156 4 160 5.87e-43 148
Msa1115220 AT4G17980.2 47.826 161 72 3 8 158 4 162 7.22e-43 149
Msa1115220 AT1G32510.1 46.667 165 76 3 6 158 2 166 1.01e-42 148
Msa1115220 AT2G33480.2 46.795 156 76 3 10 163 15 165 2.13e-41 144
Msa1115220 AT2G33480.1 46.203 158 76 3 10 163 15 167 4.30e-41 143
Msa1115220 AT2G02450.1 41.436 181 85 4 12 174 53 230 5.35e-41 146
Msa1115220 AT2G02450.2 41.436 181 85 4 12 174 53 230 1.05e-40 146
Msa1115220 AT1G26870.1 40.741 162 81 2 10 157 16 176 1.16e-40 146
Msa1115220 AT3G12977.2 60.748 107 35 3 55 156 10 114 2.01e-40 140
Msa1115220 AT2G43000.1 43.312 157 80 3 12 162 20 173 2.91e-40 141
Msa1115220 AT5G24590.2 47.742 155 74 3 8 156 11 164 4.78e-40 145
Msa1115220 AT3G10480.3 42.105 190 68 4 7 156 24 211 6.49e-40 146
Msa1115220 AT3G49530.2 44.231 156 80 3 9 158 12 166 5.68e-39 141
Msa1115220 AT2G27300.1 46.259 147 73 3 8 153 12 153 1.64e-38 138
Msa1115220 AT3G49530.1 44.805 154 78 3 9 156 12 164 1.74e-38 141
Msa1115220 AT1G52880.1 43.860 171 74 4 14 169 21 184 3.05e-38 137
Msa1115220 AT5G09330.5 44.444 153 77 3 10 156 6 156 1.21e-37 139
Msa1115220 AT5G09330.2 44.444 153 77 3 10 156 6 156 1.21e-37 139
Msa1115220 AT5G09330.4 44.444 153 77 3 10 156 6 156 1.21e-37 139
Msa1115220 AT5G09330.3 44.444 153 77 3 10 156 6 156 1.21e-37 139
Msa1115220 AT5G09330.1 44.444 153 77 3 10 156 6 156 1.21e-37 139
Msa1115220 AT2G17040.1 42.857 147 82 2 12 157 8 153 9.15e-37 132
Msa1115220 AT5G61430.2 59.434 106 35 3 58 157 1 104 9.67e-37 132
Msa1115220 AT1G34180.3 41.401 157 84 3 7 157 13 167 1.01e-36 136
Msa1115220 AT1G34180.1 42.105 152 80 3 12 157 18 167 3.75e-36 136
Msa1115220 AT4G10350.2 46.452 155 57 6 55 185 7 159 8.37e-36 130
Msa1115220 AT1G34190.1 42.105 152 80 3 12 157 18 167 1.55e-35 134
Msa1115220 AT1G34180.4 38.462 169 84 3 7 157 13 179 1.25e-34 130
Msa1115220 AT1G34180.2 39.024 164 80 3 12 157 18 179 5.25e-34 130
Msa1115220 AT3G12910.1 43.636 165 73 5 12 157 23 186 9.96e-34 125
Msa1115220 AT1G32870.2 44.937 158 75 4 8 157 8 161 1.76e-33 128
Msa1115220 AT1G32870.1 44.937 158 75 4 8 157 8 161 2.16e-33 128
Msa1115220 AT5G64060.1 39.869 153 84 3 10 156 6 156 2.94e-33 125
Msa1115220 AT1G32870.3 44.937 158 75 4 8 157 44 197 3.30e-33 128
Msa1115220 AT5G04395.1 42.384 151 73 2 1 137 19 169 3.82e-32 117
Msa1115220 AT5G22290.1 38.012 171 95 5 4 168 10 175 6.27e-32 121
Msa1115220 AT3G44290.2 40.559 143 79 3 12 153 16 153 1.59e-30 114
Msa1115220 AT3G44290.1 40.559 143 79 3 12 153 16 153 7.40e-30 115
Msa1115220 AT3G44350.2 35.648 216 116 8 6 205 1 209 1.42e-29 112
Msa1115220 AT4G01550.1 36.598 194 104 6 13 200 7 187 4.59e-29 115
Msa1115220 AT5G64530.1 32.418 182 91 4 10 171 3 172 3.33e-26 102
Msa1115220 AT3G44350.1 41.912 136 73 3 6 136 1 135 3.35e-26 101
Msa1115220 AT2G33480.3 48.077 104 48 2 64 163 9 110 1.01e-25 101
Msa1115220 AT4G01520.1 37.013 154 89 6 11 158 5 156 3.68e-24 99.8
Msa1115220 AT5G22380.1 37.013 154 84 5 13 154 8 160 4.32e-24 98.2
Msa1115220 AT4G01540.4 36.842 152 88 6 13 158 7 156 4.70e-23 98.2
Msa1115220 AT4G01540.3 36.842 152 88 6 13 158 7 156 4.88e-23 98.2
Msa1115220 AT4G01540.1 36.842 152 88 6 13 158 7 156 5.87e-23 98.6
Msa1115220 AT4G01540.2 36.842 152 88 6 13 158 7 156 5.97e-23 98.2
Msa1115220 AT1G02230.1 36.364 154 90 5 11 159 4 154 1.27e-22 96.3
Msa1115220 AT5G64530.2 36.719 128 69 2 10 137 3 118 1.73e-22 91.7
Msa1115220 AT2G18060.2 56.944 72 27 3 87 156 1 70 3.67e-22 94.0
Msa1115220 AT3G04420.2 33.333 150 93 4 11 156 4 150 4.80e-21 90.9
Msa1115220 AT3G04420.1 33.333 150 93 4 11 156 4 150 1.27e-20 90.5
Msa1115220 AT3G10490.4 53.165 79 30 2 83 156 2 78 8.66e-19 85.5
Msa1115220 AT3G10490.3 53.165 79 30 2 83 156 2 78 8.66e-19 85.5
Msa1115220 AT1G01010.1 33.750 160 91 6 13 161 6 161 2.57e-18 84.7
Msa1115220 AT2G43000.2 42.857 98 47 3 71 162 1 95 1.02e-17 80.1
Msa1115220 AT1G02250.1 32.432 148 92 4 11 153 4 148 2.53e-17 81.6
Msa1115220 AT5G50820.1 37.226 137 62 5 10 137 17 138 1.75e-16 76.6
Msa1115220 AT1G02220.1 31.008 129 80 4 11 135 4 127 3.27e-16 78.6
Msa1115220 AT3G04430.1 35.507 138 75 5 16 141 6 141 3.49e-15 73.2
Msa1115220 AT3G56530.1 27.815 151 102 4 9 154 51 199 2.71e-14 72.4
Msa1115220 AT5G14000.2 30.827 133 86 3 7 137 12 140 5.45e-13 65.9
Msa1115220 AT5G14000.1 25.581 172 121 4 7 175 12 179 2.15e-12 65.5
Msa1115220 AT1G28470.1 31.325 166 95 7 9 158 76 238 3.16e-12 66.2
Msa1115220 AT3G55210.1 26.994 163 103 4 6 154 7 167 3.31e-12 65.9
Msa1115220 AT5G22290.2 42.500 80 41 3 89 168 2 76 5.77e-12 64.7
Msa1115220 AT4G29230.2 29.319 191 101 10 10 172 47 231 3.47e-11 63.9
Msa1115220 AT4G29230.1 29.319 191 101 10 10 172 48 232 3.64e-11 63.9
Msa1115220 AT4G29230.3 29.016 193 103 10 8 172 46 232 5.74e-11 63.2

Find 78 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAACCGTGCTATTATTATT+TGG 0.209937 7_3:-62659698 None:intergenic
GAGAGAGTTAATCACTTAAT+AGG 0.254006 7_3:-62655594 None:intergenic
CTGAAGCCACACCATCTTCT+AGG 0.277699 7_3:-62659787 None:intergenic
CACAAATGAGGAAGTTCTTA+AGG 0.329369 7_3:+62655858 Msa1115220:CDS
ACAAACAGAGCAACTATATC+TGG 0.343800 7_3:+62658337 Msa1115220:CDS
ATGGTATTTCTTTAGCTTCC+GGG 0.345420 7_3:+62658288 Msa1115220:CDS
GAGCAACTATATCTGGATAT+TGG 0.349161 7_3:+62658344 Msa1115220:CDS
GCTCCAAATGGTATCAAAAC+AGG 0.356435 7_3:+62658457 Msa1115220:CDS
TGTGAACCATGGCAGCTTCC+AGG 0.356905 7_3:+62655910 Msa1115220:CDS
ATTCTTGTGGAACATGGATT+TGG 0.363780 7_3:+62659754 Msa1115220:CDS
TCTGGATATTGGAAAGCAAC+TGG 0.367759 7_3:+62658355 Msa1115220:CDS
GAGATGATGACATCAAAGTT+AGG 0.374943 7_3:-62659535 None:intergenic
TTATCATGGAAGAATTGTTT+TGG 0.380450 7_3:-62659646 None:intergenic
CCTACAACCTCTTGTGTGAT+TGG 0.380585 7_3:-62658400 None:intergenic
TTATCCAAGTGATGAGGAAT+TGG 0.381621 7_3:+62655810 Msa1115220:CDS
GAATTGTTGTGTGTTGAGTT+TGG 0.385310 7_3:-62659489 None:intergenic
TCCAAAGGTGATGATGGATA+TGG 0.397088 7_3:+62659731 Msa1115220:CDS
AATGGTATTTCTTTAGCTTC+CGG 0.397370 7_3:+62658287 Msa1115220:CDS
ATTAATTTCCTTTGAGTCAT+GGG 0.405147 7_3:+62655745 Msa1115220:exon
TATAGCCACTAGGGATGGTT+TGG 0.417138 7_3:-62659568 None:intergenic
GGGATGGTTTGGTAATTTGT+TGG 0.418314 7_3:-62659557 None:intergenic
TAAATCCAGTTGCATATTTG+CGG 0.420581 7_3:-62658312 None:intergenic
TCCATATCCATCATCACCTT+TGG 0.424892 7_3:-62659732 None:intergenic
GAAAGACATTGGTGTTCTAT+AGG 0.425789 7_3:+62658428 Msa1115220:CDS
TTCAAGGAATGAAAGAGAAA+AGG 0.434645 7_3:-62655698 None:intergenic
CTTGGATGCAATAAGATTTG+AGG 0.438363 7_3:+62659811 Msa1115220:CDS
CGGGACCGCAAATATGCAAC+TGG 0.444721 7_3:+62658307 Msa1115220:CDS
TTTGTTGATCACAGGAGGAC+TGG 0.451819 7_3:+62659408 Msa1115220:intron
CAGTTGCATATTTGCGGTCC+CGG 0.454823 7_3:-62658306 None:intergenic
CCAATCACACAAGAGGTTGT+AGG 0.461134 7_3:+62658400 Msa1115220:CDS
ATTAGTTCCAAAGGTGATGA+TGG 0.463352 7_3:+62659725 Msa1115220:CDS
AATTAATTTCCTTTGAGTCA+TGG 0.466324 7_3:+62655744 Msa1115220:exon
CACACCAATTCCTCATCACT+TGG 0.483760 7_3:-62655814 None:intergenic
ATATTGAAGGAGATTTATCA+TGG 0.486039 7_3:-62659660 None:intergenic
CTTGGATAAAATCGAAATCC+AGG 0.488698 7_3:-62655796 None:intergenic
TTGTTGATCACAGGAGGACT+GGG 0.497348 7_3:+62659409 Msa1115220:intron
CTCTCAAACCCATGACTCAA+AGG 0.497598 7_3:-62655753 None:intergenic
ACAAATGAGGAAGTTCTTAA+GGG 0.506795 7_3:+62655859 Msa1115220:CDS
CTGTTTCACGAGAATATTGA+AGG 0.508957 7_3:-62659673 None:intergenic
AGATGATGACATCAAAGTTA+GGG 0.519573 7_3:-62659534 None:intergenic
CATAGAAAACTCACCTTAGG+AGG 0.520840 7_3:-62658520 None:intergenic
CAATCACACAAGAGGTTGTA+GGG 0.525240 7_3:+62658401 Msa1115220:CDS
ATAGGAGCTTCACTACCTCC+TGG 0.533290 7_3:+62655778 Msa1115220:CDS
TTTGTATAAAGAAAGAAATG+TGG 0.541065 7_3:-62655640 None:intergenic
CTGGATATTGGAAAGCAACT+GGG 0.545781 7_3:+62658356 Msa1115220:CDS
TAAATGATGAAGTGTTGTCA+TGG 0.547733 7_3:-62659615 None:intergenic
AGATGGTGTGGCTTCAGACT+TGG 0.547899 7_3:+62659793 Msa1115220:CDS
TATATACCTGGAAGCTGCCA+TGG 0.548318 7_3:-62655916 None:intergenic
CAAGTTTGTTATAGCCACTA+GGG 0.549346 7_3:-62659577 None:intergenic
GAAGAAAATAGCCTAGAAGA+TGG 0.553895 7_3:+62659776 Msa1115220:CDS
CAAAGCTTAATGCAAATGAA+TGG 0.555762 7_3:+62658269 Msa1115220:CDS
ATATGGATTCTTGTGGAACA+TGG 0.561084 7_3:+62659748 Msa1115220:CDS
AAATGATGAAGTGTTGTCAT+GGG 0.565391 7_3:-62659614 None:intergenic
TAATGTGTATAATTGAAGCT+TGG 0.566960 7_3:-62655616 None:intergenic
GACACCACACATGCCTCCTA+AGG 0.568201 7_3:+62658507 Msa1115220:CDS
TTTGTTATAGCCACTAGGGA+TGG 0.575379 7_3:-62659573 None:intergenic
GTTACTCAAATTAGTTCCAA+AGG 0.576717 7_3:+62659716 Msa1115220:CDS
GTCATGGGTTTGAGAGACAT+AGG 0.581509 7_3:+62655760 Msa1115220:exon
AGCAACTGGGAAAGATCGTA+TGG 0.583285 7_3:+62658369 Msa1115220:CDS
TCAAGTTTGTTATAGCCACT+AGG 0.587656 7_3:-62659578 None:intergenic
TATAGGAATAGAGCTCCAAA+TGG 0.588028 7_3:+62658445 Msa1115220:CDS
TGAGGTTGATAATGATAATG+TGG 0.588693 7_3:+62659829 Msa1115220:CDS
TGTAGGGATGAGAAAGACAT+TGG 0.588790 7_3:+62658417 Msa1115220:CDS
GATGACATCAAAGTTAGGGA+TGG 0.596756 7_3:-62659530 None:intergenic
CTCCAAATGGTATCAAAACA+GGG 0.600706 7_3:+62658458 Msa1115220:CDS
GACATCAAAGTTAGGGATGG+AGG 0.613884 7_3:-62659527 None:intergenic
CTCACCTTAGGAGGCATGTG+TGG 0.621337 7_3:-62658511 None:intergenic
AAATAGCCTAGAAGATGGTG+TGG 0.624894 7_3:+62659781 Msa1115220:CDS
GCCATGGTTCACATATGTGA+AGG 0.625702 7_3:-62655900 None:intergenic
ATGATGGATATGGATTCTTG+TGG 0.648298 7_3:+62659741 Msa1115220:CDS
AGATCCAAATAATAATAGCA+CGG 0.654615 7_3:+62659694 Msa1115220:CDS
GTTAGATCCAATCACACAAG+AGG 0.657130 7_3:+62658393 Msa1115220:CDS
AATGATGAAGTGTTGTCATG+GGG 0.659787 7_3:-62659613 None:intergenic
ATGATGAAGTGTTGTCATGG+GGG 0.660202 7_3:-62659612 None:intergenic
ACCTTCACATATGTGAACCA+TGG 0.672346 7_3:+62655899 Msa1115220:CDS
AATTACCAAACCATCCCTAG+TGG 0.692848 7_3:+62659563 Msa1115220:CDS
CAAATGGTATCAAAACAGGG+TGG 0.731036 7_3:+62658461 Msa1115220:CDS
GGATAAAATCGAAATCCAGG+AGG 0.731687 7_3:-62655793 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTTTTTTTTTTTTTTA+TGG - chr7_3:62657559-62657578 None:intergenic 0.0%
!! AAAAAAAAAAAAAAATTTAA+AGG + chr7_3:62657560-62657579 Msa1115220:intron 0.0%
!! TTTATATGAAAAAAATACAA+GGG - chr7_3:62656990-62657009 None:intergenic 10.0%
!!! TTTTATATGAAAAAAATACA+AGG - chr7_3:62656991-62657010 None:intergenic 10.0%
!!! TTTAAGATAGATAAAAAAAT+TGG + chr7_3:62657157-62657176 Msa1115220:intron 10.0%
!! AAAAAAAAAAATTTAAAGGA+AGG + chr7_3:62657564-62657583 Msa1115220:intron 10.0%
!!! AAATAGCTTTTTAATTTTTA+TGG - chr7_3:62657596-62657615 None:intergenic 10.0%
!!! ATCAAAAGTATAAAAATTAA+GGG + chr7_3:62658636-62658655 Msa1115220:intron 10.0%
!!! AGAACTTATTTTATTTAATA+TGG - chr7_3:62658996-62659015 None:intergenic 10.0%
!!! TTAATAATTTGTTTGATTTC+TGG + chr7_3:62656039-62656058 Msa1115220:intron 15.0%
!!! ATTGGAATTTTTTTTTTGAA+GGG - chr7_3:62656951-62656970 None:intergenic 15.0%
!! TTTCAAATAACAAAATCAAT+TGG + chr7_3:62657527-62657546 Msa1115220:intron 15.0%
!!! TTTGCTACTAATTTTTTTAA+AGG - chr7_3:62657750-62657769 None:intergenic 15.0%
!!! TAAGAAAAGATTCATTTTTT+AGG + chr7_3:62657880-62657899 Msa1115220:intron 15.0%
!!! CATCAAAAGTATAAAAATTA+AGG + chr7_3:62658635-62658654 Msa1115220:intron 15.0%
!! CATGTTAAAAAAAAATCTAA+GGG + chr7_3:62659240-62659259 Msa1115220:intron 15.0%
!! TATGACAAATGAAAAATAAA+AGG + chr7_3:62659285-62659304 Msa1115220:intron 15.0%
!!! CACATATATTTTTGTTAATT+AGG + chr7_3:62659378-62659397 Msa1115220:intron 15.0%
!! TTTGTATAAAGAAAGAAATG+TGG - chr7_3:62655643-62655662 None:intergenic 20.0%
!!! GAAATTTAATGAAGATTTTG+TGG - chr7_3:62655679-62655698 None:intergenic 20.0%
!! AATTATCTGAATTATCTTCA+TGG + chr7_3:62655995-62656014 Msa1115220:intron 20.0%
!! TTTCCATATTTAGCAAAATA+TGG - chr7_3:62656281-62656300 None:intergenic 20.0%
!! AGAATACAAGAAAAATAGAA+AGG + chr7_3:62656370-62656389 Msa1115220:intron 20.0%
!! GAATACAAGAAAAATAGAAA+GGG + chr7_3:62656371-62656390 Msa1115220:intron 20.0%
!!! TTTTCTTCTTTCAGTTAAAA+CGG + chr7_3:62656659-62656678 Msa1115220:intron 20.0%
!!! AGATAATATTTATCCTTTTG+CGG + chr7_3:62656706-62656725 Msa1115220:intron 20.0%
!! CTAAGAATAATATTACTGTA+TGG - chr7_3:62656855-62656874 None:intergenic 20.0%
!!! TTGGAATTTTTTTTTTGAAG+GGG - chr7_3:62656950-62656969 None:intergenic 20.0%
!!! GATTGGAATTTTTTTTTTGA+AGG - chr7_3:62656952-62656971 None:intergenic 20.0%
!!! GCTATTTTTTTATATACGTA+CGG + chr7_3:62657609-62657628 Msa1115220:intron 20.0%
!!! CTATTTTTTTATATACGTAC+GGG + chr7_3:62657610-62657629 Msa1115220:intron 20.0%
!!! ATTTGGAACTTGAAAAAAAT+TGG + chr7_3:62658019-62658038 Msa1115220:intron 20.0%
!! TATGGATAAAGAAGAAAAAA+GGG + chr7_3:62658826-62658845 Msa1115220:intron 20.0%
!!! GTTTTTAAATGATTGAATGT+TGG + chr7_3:62658938-62658957 Msa1115220:intron 20.0%
!! AAGTAAAAATTCATTCGTAT+TGG + chr7_3:62659035-62659054 Msa1115220:intron 20.0%
!!! TTTTTTTTAACATGCGAAAA+TGG - chr7_3:62659234-62659253 None:intergenic 20.0%
!! GCATGTTAAAAAAAAATCTA+AGG + chr7_3:62659239-62659258 Msa1115220:intron 20.0%
! TAATGTGTATAATTGAAGCT+TGG - chr7_3:62655619-62655638 None:intergenic 25.0%
! TTAAAAAGAAAGGAGATTCA+AGG - chr7_3:62655717-62655736 None:intergenic 25.0%
! AATTAATTTCCTTTGAGTCA+TGG + chr7_3:62655744-62655763 Msa1115220:exon 25.0%
! ATTAATTTCCTTTGAGTCAT+GGG + chr7_3:62655745-62655764 Msa1115220:exon 25.0%
! TTACAAAAAGATCACAAATG+AGG + chr7_3:62655846-62655865 Msa1115220:CDS 25.0%
! GCATAATTAACATATATACC+TGG - chr7_3:62655931-62655950 None:intergenic 25.0%
!!! AATCTAAGAAAGTGTTCTTT+TGG - chr7_3:62656312-62656331 None:intergenic 25.0%
!!! CTTTCTCTCTTATTTTCTTT+TGG - chr7_3:62656341-62656360 None:intergenic 25.0%
! ATTAATTGATGTAGATTTGC+TGG + chr7_3:62656510-62656529 Msa1115220:intron 25.0%
! ACAAGACAACTATATACAAA+AGG - chr7_3:62656550-62656569 None:intergenic 25.0%
!!! TTTGAGTTCTATTTTCTACA+AGG + chr7_3:62656605-62656624 Msa1115220:intron 25.0%
! AGAAGAAAAATGATGAGATA+AGG - chr7_3:62656648-62656667 None:intergenic 25.0%
! ATCTTAAACGTAAAACTGAA+GGG - chr7_3:62657145-62657164 None:intergenic 25.0%
! TATCTTAAACGTAAAACTGA+AGG - chr7_3:62657146-62657165 None:intergenic 25.0%
! TTTCCTATATTTCATCATGA+GGG - chr7_3:62657394-62657413 None:intergenic 25.0%
!! TTTTCCTATATTTCATCATG+AGG - chr7_3:62657395-62657414 None:intergenic 25.0%
!!! TTTTATTTTTGTGTGTAACC+CGG + chr7_3:62657482-62657501 Msa1115220:intron 25.0%
!!! TCTTACTTTTTATTTTACCC+GGG - chr7_3:62657503-62657522 None:intergenic 25.0%
!!! CTCTTACTTTTTATTTTACC+CGG - chr7_3:62657504-62657523 None:intergenic 25.0%
! GAAATGAGATAATAGTAAGA+AGG + chr7_3:62657698-62657717 Msa1115220:intron 25.0%
!!! ACTCTATTTGCCTTTTTTTA+GGG - chr7_3:62657778-62657797 None:intergenic 25.0%
!!! TACTCTATTTGCCTTTTTTT+AGG - chr7_3:62657779-62657798 None:intergenic 25.0%
! TTCAAAATTTGTAACCACTA+TGG + chr7_3:62657816-62657835 Msa1115220:intron 25.0%
!!! TCTTTTCTTATATTTGAGAC+CGG - chr7_3:62657979-62657998 None:intergenic 25.0%
!!! TCTTTTCTTATATTTGAGAC+CGG + chr7_3:62657979-62657998 Msa1115220:intron 25.0%
! ATAATATCATCCATCTTCTA+TGG + chr7_3:62658808-62658827 Msa1115220:intron 25.0%
! CTATGGATAAAGAAGAAAAA+AGG + chr7_3:62658825-62658844 Msa1115220:intron 25.0%
! ACATCAAGAATAAAACATGA+AGG + chr7_3:62658887-62658906 Msa1115220:intron 25.0%
! CATCAAGAATAAAACATGAA+GGG + chr7_3:62658888-62658907 Msa1115220:intron 25.0%
! AAGTTCTATTAGTTAGTTGT+TGG + chr7_3:62659009-62659028 Msa1115220:intron 25.0%
! TAAAAATTCATTCGTATTGG+TGG + chr7_3:62659038-62659057 Msa1115220:intron 25.0%
!! AAAAGGTTACCTTAATTTGA+TGG + chr7_3:62659302-62659321 Msa1115220:intron 25.0%
!! TTATCATGGAAGAATTGTTT+TGG - chr7_3:62659649-62659668 None:intergenic 25.0%
! ATATTGAAGGAGATTTATCA+TGG - chr7_3:62659663-62659682 None:intergenic 25.0%
! AGATCCAAATAATAATAGCA+CGG + chr7_3:62659694-62659713 Msa1115220:CDS 25.0%
GAGAGAGTTAATCACTTAAT+AGG - chr7_3:62655597-62655616 None:intergenic 30.0%
TTCAAGGAATGAAAGAGAAA+AGG - chr7_3:62655701-62655720 None:intergenic 30.0%
ACAAATGAGGAAGTTCTTAA+GGG + chr7_3:62655859-62655878 Msa1115220:CDS 30.0%
!!! AATAACCTATGTTTTGAGGT+TGG - chr7_3:62656151-62656170 None:intergenic 30.0%
! GTGAAATAACCTATGTTTTG+AGG - chr7_3:62656155-62656174 None:intergenic 30.0%
! CTGCCATATTTTGCTAAATA+TGG + chr7_3:62656275-62656294 Msa1115220:intron 30.0%
!!! CTCTTATTTTCTTTTGGTTG+TGG - chr7_3:62656335-62656354 None:intergenic 30.0%
ACAAGAAAAATAGAAAGGGA+TGG + chr7_3:62656375-62656394 Msa1115220:intron 30.0%
AAAAATAGAAAGGGATGGAA+AGG + chr7_3:62656380-62656399 Msa1115220:intron 30.0%
! ACTTTGTATTTTACCGCAAA+AGG - chr7_3:62656722-62656741 None:intergenic 30.0%
TAGAGAGTCATATCAAAGAA+AGG - chr7_3:62657311-62657330 None:intergenic 30.0%
TTCCTATATTTCATCATGAG+GGG - chr7_3:62657393-62657412 None:intergenic 30.0%
!!! TTTATTTTTGTGTGTAACCC+GGG + chr7_3:62657483-62657502 Msa1115220:intron 30.0%
TGAGATAATAGTAAGAAGGA+AGG + chr7_3:62657702-62657721 Msa1115220:intron 30.0%
AAAAGGCAAATAGAGTAACT+TGG + chr7_3:62657782-62657801 Msa1115220:intron 30.0%
GTTGTTGTCTATATAGTTGT+TGG + chr7_3:62658175-62658194 Msa1115220:intron 30.0%
GCATGAAATTAACACATGAT+GGG - chr7_3:62658232-62658251 None:intergenic 30.0%
TGCATGAAATTAACACATGA+TGG - chr7_3:62658233-62658252 None:intergenic 30.0%
CAAAGCTTAATGCAAATGAA+TGG + chr7_3:62658269-62658288 Msa1115220:CDS 30.0%
! AATGGTATTTCTTTAGCTTC+CGG + chr7_3:62658287-62658306 Msa1115220:CDS 30.0%
TAAATCCAGTTGCATATTTG+CGG - chr7_3:62658315-62658334 None:intergenic 30.0%
ATACATAGAAAACTCACCTT+AGG - chr7_3:62658526-62658545 None:intergenic 30.0%
TCTTCTTTATCCATAGAAGA+TGG - chr7_3:62658821-62658840 None:intergenic 30.0%
! CTAATGCCAATTTTGTGTTA+GGG + chr7_3:62659071-62659090 Msa1115220:intron 30.0%
! TAATGCCAATTTTGTGTTAG+GGG + chr7_3:62659072-62659091 Msa1115220:intron 30.0%
AAATACACGCCATCAAATTA+AGG - chr7_3:62659314-62659333 None:intergenic 30.0%
!!! AATTTGATGGCGTGTATTTT+TGG + chr7_3:62659315-62659334 Msa1115220:intron 30.0%
! GTCAAATTTTTGTTGATCAC+AGG + chr7_3:62659400-62659419 Msa1115220:intron 30.0%
! AAATTTTTGTTGATCACAGG+AGG + chr7_3:62659403-62659422 Msa1115220:intron 30.0%
AGATGATGACATCAAAGTTA+GGG - chr7_3:62659537-62659556 None:intergenic 30.0%
!! AAATGATGAAGTGTTGTCAT+GGG - chr7_3:62659617-62659636 None:intergenic 30.0%
!! TAAATGATGAAGTGTTGTCA+TGG - chr7_3:62659618-62659637 None:intergenic 30.0%
!!! ATGGAAGAATTGTTTTGGTT+TGG - chr7_3:62659644-62659663 None:intergenic 30.0%
! GTAACCGTGCTATTATTATT+TGG - chr7_3:62659701-62659720 None:intergenic 30.0%
GTTACTCAAATTAGTTCCAA+AGG + chr7_3:62659716-62659735 Msa1115220:CDS 30.0%
!! TGAGGTTGATAATGATAATG+TGG + chr7_3:62659829-62659848 Msa1115220:CDS 30.0%
CTTGGATAAAATCGAAATCC+AGG - chr7_3:62655799-62655818 None:intergenic 35.0%
! TCGATTTTATCCAAGTGATG+AGG + chr7_3:62655804-62655823 Msa1115220:CDS 35.0%
TTATCCAAGTGATGAGGAAT+TGG + chr7_3:62655810-62655829 Msa1115220:CDS 35.0%
CACAAATGAGGAAGTTCTTA+AGG + chr7_3:62655858-62655877 Msa1115220:CDS 35.0%
GTACGAAAGACACAAACAAA+AGG - chr7_3:62656113-62656132 None:intergenic 35.0%
GAATACCAACCTCAAAACAT+AGG + chr7_3:62656143-62656162 Msa1115220:intron 35.0%
AACAACTAGAGACAGAACAA+AGG - chr7_3:62656216-62656235 None:intergenic 35.0%
TTGTCAGATCAAGTTCATGA+AGG - chr7_3:62656249-62656268 None:intergenic 35.0%
!!! TTTTTTGAAGGGGCAATGAT+TGG - chr7_3:62656940-62656959 None:intergenic 35.0%
AAATTCCAATCATTGCAGCA+AGG + chr7_3:62656961-62656980 Msa1115220:intron 35.0%
ATCAACACTGCTGTCTTTAA+CGG + chr7_3:62657236-62657255 Msa1115220:intron 35.0%
GCAAATGCTTCCCTAAAAAA+AGG + chr7_3:62657765-62657784 Msa1115220:intron 35.0%
TTTCATGACATCAACCATAG+TGG - chr7_3:62657833-62657852 None:intergenic 35.0%
! TTCTTATATTTGAGACCGGA+GGG - chr7_3:62657983-62658002 None:intergenic 35.0%
! TTTCTTATATTTGAGACCGG+AGG - chr7_3:62657982-62658001 None:intergenic 35.0%
! TTTCTTATATTTGAGACCGG+AGG + chr7_3:62657982-62658001 Msa1115220:intron 35.0%
! TTCTTATATTTGAGACCGGA+GGG + chr7_3:62657983-62658002 Msa1115220:intron 35.0%
GTCATATGTCTATTGTGTGT+TGG - chr7_3:62658073-62658092 None:intergenic 35.0%
AACAACACGTGACTAAGTTA+AGG - chr7_3:62658161-62658180 None:intergenic 35.0%
! ATGGTATTTCTTTAGCTTCC+GGG + chr7_3:62658288-62658307 Msa1115220:CDS 35.0%
ACAAACAGAGCAACTATATC+TGG + chr7_3:62658337-62658356 Msa1115220:CDS 35.0%
GAGCAACTATATCTGGATAT+TGG + chr7_3:62658344-62658363 Msa1115220:CDS 35.0%
! GAAAGACATTGGTGTTCTAT+AGG + chr7_3:62658428-62658447 Msa1115220:CDS 35.0%
TATAGGAATAGAGCTCCAAA+TGG + chr7_3:62658445-62658464 Msa1115220:CDS 35.0%
CTCCAAATGGTATCAAAACA+GGG + chr7_3:62658458-62658477 Msa1115220:CDS 35.0%
ACCACATTGGCAAAATGATA+GGG - chr7_3:62658551-62658570 None:intergenic 35.0%
! GCTAATGCCAATTTTGTGTT+AGG + chr7_3:62659070-62659089 Msa1115220:intron 35.0%
ATGAACCCCTAACACAAAAT+TGG - chr7_3:62659080-62659099 None:intergenic 35.0%
GAATTGTTGTGTGTTGAGTT+TGG - chr7_3:62659492-62659511 None:intergenic 35.0%
GAGATGATGACATCAAAGTT+AGG - chr7_3:62659538-62659557 None:intergenic 35.0%
!! CAAGTTTGTTATAGCCACTA+GGG - chr7_3:62659580-62659599 None:intergenic 35.0%
!! TCAAGTTTGTTATAGCCACT+AGG - chr7_3:62659581-62659600 None:intergenic 35.0%
!! AATGATGAAGTGTTGTCATG+GGG - chr7_3:62659616-62659635 None:intergenic 35.0%
CTGTTTCACGAGAATATTGA+AGG - chr7_3:62659676-62659695 None:intergenic 35.0%
ATTAGTTCCAAAGGTGATGA+TGG + chr7_3:62659725-62659744 Msa1115220:CDS 35.0%
!! ATGATGGATATGGATTCTTG+TGG + chr7_3:62659741-62659760 Msa1115220:CDS 35.0%
ATATGGATTCTTGTGGAACA+TGG + chr7_3:62659748-62659767 Msa1115220:CDS 35.0%
ATTCTTGTGGAACATGGATT+TGG + chr7_3:62659754-62659773 Msa1115220:CDS 35.0%
GAAGAAAATAGCCTAGAAGA+TGG + chr7_3:62659776-62659795 Msa1115220:CDS 35.0%
CTTGGATGCAATAAGATTTG+AGG + chr7_3:62659811-62659830 Msa1115220:CDS 35.0%
GGATAAAATCGAAATCCAGG+AGG - chr7_3:62655796-62655815 None:intergenic 40.0%
ACCTTCACATATGTGAACCA+TGG + chr7_3:62655899-62655918 Msa1115220:CDS 40.0%
GTCCCCTCATGATGAAATAT+AGG + chr7_3:62657388-62657407 Msa1115220:intron 40.0%
AGGCAAATAGAGTAACTTGG+AGG + chr7_3:62657785-62657804 Msa1115220:intron 40.0%
! AGGGAGTATGTGGTAAGATT+TGG + chr7_3:62658002-62658021 Msa1115220:intron 40.0%
GACTAAGTTAAGGTAAGGTC+AGG - chr7_3:62658151-62658170 None:intergenic 40.0%
CACGTGACTAAGTTAAGGTA+AGG - chr7_3:62658156-62658175 None:intergenic 40.0%
ATTTCATGCATTGCATGCAG+AGG + chr7_3:62658243-62658262 Msa1115220:intron 40.0%
TCTGGATATTGGAAAGCAAC+TGG + chr7_3:62658355-62658374 Msa1115220:CDS 40.0%
CTGGATATTGGAAAGCAACT+GGG + chr7_3:62658356-62658375 Msa1115220:CDS 40.0%
GTTAGATCCAATCACACAAG+AGG + chr7_3:62658393-62658412 Msa1115220:CDS 40.0%
CAATCACACAAGAGGTTGTA+GGG + chr7_3:62658401-62658420 Msa1115220:CDS 40.0%
TGTAGGGATGAGAAAGACAT+TGG + chr7_3:62658417-62658436 Msa1115220:CDS 40.0%
GCTCCAAATGGTATCAAAAC+AGG + chr7_3:62658457-62658476 Msa1115220:CDS 40.0%
!!! CACCCTGTTTTGATACCATT+TGG - chr7_3:62658463-62658482 None:intergenic 40.0%
CAAATGGTATCAAAACAGGG+TGG + chr7_3:62658461-62658480 Msa1115220:CDS 40.0%
CATAGAAAACTCACCTTAGG+AGG - chr7_3:62658523-62658542 None:intergenic 40.0%
CACCACATTGGCAAAATGAT+AGG - chr7_3:62658552-62658571 None:intergenic 40.0%
AAAACGTAGTTGCACCACAT+TGG - chr7_3:62658564-62658583 None:intergenic 40.0%
TTGTGTTAGGGGTTCATAGT+TGG + chr7_3:62659083-62659102 Msa1115220:intron 40.0%
GTGTCAAAAGAAGACGACTA+CGG - chr7_3:62659183-62659202 None:intergenic 40.0%
GATGACATCAAAGTTAGGGA+TGG - chr7_3:62659533-62659552 None:intergenic 40.0%
!! GGGATGGTTTGGTAATTTGT+TGG - chr7_3:62659560-62659579 None:intergenic 40.0%
AATTACCAAACCATCCCTAG+TGG + chr7_3:62659563-62659582 Msa1115220:CDS 40.0%
! TTTGTTATAGCCACTAGGGA+TGG - chr7_3:62659576-62659595 None:intergenic 40.0%
!! ATGATGAAGTGTTGTCATGG+GGG - chr7_3:62659615-62659634 None:intergenic 40.0%
!! TCCAAAGGTGATGATGGATA+TGG + chr7_3:62659731-62659750 Msa1115220:CDS 40.0%
TCCATATCCATCATCACCTT+TGG - chr7_3:62659735-62659754 None:intergenic 40.0%
AAATAGCCTAGAAGATGGTG+TGG + chr7_3:62659781-62659800 Msa1115220:CDS 40.0%
CTCTCAAACCCATGACTCAA+AGG - chr7_3:62655756-62655775 None:intergenic 45.0%
GTCATGGGTTTGAGAGACAT+AGG + chr7_3:62655760-62655779 Msa1115220:exon 45.0%
CACACCAATTCCTCATCACT+TGG - chr7_3:62655817-62655836 None:intergenic 45.0%
GCCATGGTTCACATATGTGA+AGG - chr7_3:62655903-62655922 None:intergenic 45.0%
TATATACCTGGAAGCTGCCA+TGG - chr7_3:62655919-62655938 None:intergenic 45.0%
GAAAGGGATGGAAAGGTAAG+AGG + chr7_3:62656387-62656406 Msa1115220:intron 45.0%
GGATGGAAAGGTAAGAGGAA+GGG + chr7_3:62656392-62656411 Msa1115220:intron 45.0%
! GTCATGAGCTTTGTAGCATG+AGG - chr7_3:62656888-62656907 None:intergenic 45.0%
GGAATCCTTGCTGCAATGAT+TGG - chr7_3:62656969-62656988 None:intergenic 45.0%
TGAAACACTAGTACTCCCTC+CGG + chr7_3:62657848-62657867 Msa1115220:intron 45.0%
ATCTTACCACATACTCCCTC+CGG - chr7_3:62658001-62658020 None:intergenic 45.0%
AGCAACTGGGAAAGATCGTA+TGG + chr7_3:62658369-62658388 Msa1115220:CDS 45.0%
CCTACAACCTCTTGTGTGAT+TGG - chr7_3:62658403-62658422 None:intergenic 45.0%
CCAATCACACAAGAGGTTGT+AGG + chr7_3:62658400-62658419 Msa1115220:CDS 45.0%
! GCCCTATCATTTTGCCAATG+TGG + chr7_3:62658547-62658566 Msa1115220:intron 45.0%
! TGTTCTTTGTTGCTTGACCG+TGG + chr7_3:62659150-62659169 Msa1115220:intron 45.0%
ACGACTACGGTTTACAACCA+CGG - chr7_3:62659170-62659189 None:intergenic 45.0%
! GTCGTCTTCTTTTGACACGT+CGG + chr7_3:62659185-62659204 Msa1115220:intron 45.0%
TTTGTTGATCACAGGAGGAC+TGG + chr7_3:62659408-62659427 Msa1115220:intron 45.0%
TTGTTGATCACAGGAGGACT+GGG + chr7_3:62659409-62659428 Msa1115220:intron 45.0%
GACATCAAAGTTAGGGATGG+AGG - chr7_3:62659530-62659549 None:intergenic 45.0%
TATAGCCACTAGGGATGGTT+TGG - chr7_3:62659571-62659590 None:intergenic 45.0%
!! ATTAATAAAATTAAAAAGAA+AGG - chr7_3:62655727-62655746 None:intergenic 5.0%
!! TAAGAAATTAATATAATAAA+GGG - chr7_3:62657117-62657136 None:intergenic 5.0%
!! ATAAGAAATTAATATAATAA+AGG - chr7_3:62657118-62657137 None:intergenic 5.0%
ATAGGAGCTTCACTACCTCC+TGG + chr7_3:62655778-62655797 Msa1115220:CDS 50.0%
GGGATGGAAAGGTAAGAGGA+AGG + chr7_3:62656391-62656410 Msa1115220:intron 50.0%
TCATGCATTGCATGCAGAGG+TGG + chr7_3:62658246-62658265 Msa1115220:intron 50.0%
CAGTTGCATATTTGCGGTCC+CGG - chr7_3:62658309-62658328 None:intergenic 50.0%
CCAATGCTCAGACAAGCAAG+CGG - chr7_3:62659118-62659137 None:intergenic 50.0%
!!! TGGCGTGTATTTTTGGCGTG+AGG + chr7_3:62659322-62659341 Msa1115220:intron 50.0%
CTGAAGCCACACCATCTTCT+AGG - chr7_3:62659790-62659809 None:intergenic 50.0%
AGATGGTGTGGCTTCAGACT+TGG + chr7_3:62659793-62659812 Msa1115220:CDS 50.0%
TGTGAACCATGGCAGCTTCC+AGG + chr7_3:62655910-62655929 Msa1115220:CDS 55.0%
! TTGAGACCGGAGGGAGTATG+TGG + chr7_3:62657992-62658011 Msa1115220:intron 55.0%
CGGGACCGCAAATATGCAAC+TGG + chr7_3:62658307-62658326 Msa1115220:CDS 55.0%
GACACCACACATGCCTCCTA+AGG + chr7_3:62658507-62658526 Msa1115220:CDS 55.0%
! CTCACCTTAGGAGGCATGTG+TGG - chr7_3:62658514-62658533 None:intergenic 55.0%
CCGCTTGCTTGTCTGAGCAT+TGG + chr7_3:62659115-62659134 Msa1115220:intron 55.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 62655592 62659862 62655592 ID=Msa1115220;Name=Msa1115220
chr7_3 mRNA 62655592 62659862 62655592 ID=Msa1115220-mRNA-1;Parent=Msa1115220;Name=Msa1115220-mRNA-1;_AED=0.02;_eAED=0.02;_QI=171|1|0.66|1|1|1|3|0|291
chr7_3 exon 62655592 62655931 62655592 ID=Msa1115220-mRNA-1:exon:14444;Parent=Msa1115220-mRNA-1
chr7_3 exon 62658263 62658528 62658263 ID=Msa1115220-mRNA-1:exon:14445;Parent=Msa1115220-mRNA-1
chr7_3 exon 62659422 62659862 62659422 ID=Msa1115220-mRNA-1:exon:14446;Parent=Msa1115220-mRNA-1
chr7_3 five_prime_UTR 62655592 62655762 62655592 ID=Msa1115220-mRNA-1:five_prime_utr;Parent=Msa1115220-mRNA-1
chr7_3 CDS 62655763 62655931 62655763 ID=Msa1115220-mRNA-1:cds;Parent=Msa1115220-mRNA-1
chr7_3 CDS 62658263 62658528 62658263 ID=Msa1115220-mRNA-1:cds;Parent=Msa1115220-mRNA-1
chr7_3 CDS 62659422 62659862 62659422 ID=Msa1115220-mRNA-1:cds;Parent=Msa1115220-mRNA-1
Gene Sequence

>Msa1115220

ATGGGTTTGAGAGACATAGGAGCTTCACTACCTCCTGGATTTCGATTTTATCCAAGTGATGAGGAATTGGTGTGTCACTATCTTTACAAAAAGATCACAAATGAGGAAGTTCTTAAGGGTACTTTGATTGAAATTGACCTTCACATATGTGAACCATGGCAGCTTCCAGAGGTGGCAAAGCTTAATGCAAATGAATGGTATTTCTTTAGCTTCCGGGACCGCAAATATGCAACTGGATTTAGAACAAACAGAGCAACTATATCTGGATATTGGAAAGCAACTGGGAAAGATCGTATGGTGTTAGATCCAATCACACAAGAGGTTGTAGGGATGAGAAAGACATTGGTGTTCTATAGGAATAGAGCTCCAAATGGTATCAAAACAGGGTGGATTATGCATGAATTTCGCTTAGAGACACCACACATGCCTCCTAAGGAGGACTGGGTATTGTGTAGAGTCTTTCACAAAAGCAAAGAAGAGAACAACAACAACAATAATAGTTCCAAACTCAACACACAACAATTCATGTATGAGACAACACCTCCATCCCTAACTTTGATGTCATCATCTCCAACAAATTACCAAACCATCCCTAGTGGCTATAACAAACTTGATTCTTTTTCTTCCCCCATGACAACACTTCATCATTTAAATCCAAACCAAAACAATTCTTCCATGATAAATCTCCTTCAATATTCTCGTGAAACAGATCCAAATAATAATAGCACGGTTACTCAAATTAGTTCCAAAGGTGATGATGGATATGGATTCTTGTGGAACATGGATTTGGAAGAAAATAGCCTAGAAGATGGTGTGGCTTCAGACTTGGATGCAATAAGATTTGAGGTTGATAATGATAATGTGGTCTTACTATAA
Protein sequence

>Msa1115220

MGLRDIGASLPPGFRFYPSDEELVCHYLYKKITNEEVLKGTLIEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATISGYWKATGKDRMVLDPITQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKEENNNNNNSSKLNTQQFMYETTPPSLTLMSSSPTNYQTIPSGYNKLDSFSSPMTTLHHLNPNQNNSSMINLLQYSRETDPNNNSTVTQISSKGDDGYGFLWNMDLEENSLEDGVASDLDAIRFEVDNDNVVLL*