AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1163950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1163950 MtrunA17_Chr7g0261411 100.000 129 0 0 1 129 1 129 1.54e-95 278
Msa1163950 MtrunA17_Chr1g0183741 92.248 129 10 0 1 129 1 129 5.91e-87 256
Msa1163950 MtrunA17_Chr2g0312321 62.602 123 42 2 6 128 7 125 7.91e-50 162
Msa1163950 MtrunA17_Chr2g0316971 60.656 122 48 0 8 129 21 142 1.64e-49 163
Msa1163950 MtrunA17_Chr1g0147421 52.414 145 68 1 2 145 19 163 2.00e-48 160
Msa1163950 MtrunA17_Chr3g0139331 58.333 120 50 0 9 128 10 129 1.53e-47 157
Msa1163950 MtrunA17_Chr4g0060931 55.645 124 53 1 5 128 12 133 6.78e-45 151
Msa1163950 MtrunA17_Chr3g0144271 57.500 120 50 1 10 128 23 142 3.85e-44 150
Msa1163950 MtrunA17_Chr3g0091921 57.143 119 49 1 10 128 16 132 1.25e-43 146
Msa1163950 MtrunA17_Chr6g0481091 56.911 123 49 2 8 128 4 124 1.88e-43 144
Msa1163950 MtrunA17_Chr6g0461661 55.645 124 55 0 5 128 13 136 2.09e-43 147
Msa1163950 MtrunA17_Chr2g0309891 59.016 122 46 2 9 128 5 124 2.65e-43 146
Msa1163950 MtrunA17_Chr6g0453451 55.833 120 51 1 10 129 20 137 3.06e-43 145
Msa1163950 MtrunA17_Chr5g0405211 52.713 129 56 2 3 128 1 127 3.91e-43 146
Msa1163950 MtrunA17_Chr7g0253011 54.331 127 56 1 4 128 11 137 1.76e-42 145
Msa1163950 MtrunA17_Chr6g0484441 55.833 120 51 1 9 128 4 121 2.19e-42 143
Msa1163950 MtrunA17_Chr1g0200561 51.969 127 56 2 5 128 14 138 1.39e-41 142
Msa1163950 MtrunA17_Chr4g0056541 52.419 124 54 2 8 128 5 126 1.78e-41 142
Msa1163950 MtrunA17_Chr5g0433781 52.448 143 61 3 8 148 4 141 4.43e-41 145
Msa1163950 MtrunA17_Chr4g0018391 42.941 170 78 4 8 160 5 172 5.11e-41 140
Msa1163950 MtrunA17_Chr3g0109821 58.871 124 47 2 8 129 4 125 5.64e-41 145
Msa1163950 MtrunA17_Chr2g0318101 54.167 120 55 0 9 128 14 133 6.71e-41 140
Msa1163950 MtrunA17_Chr4g0042561 49.180 122 60 1 7 128 6 125 8.83e-41 138
Msa1163950 MtrunA17_Chr7g0217721 53.448 116 52 1 13 128 22 135 1.48e-40 139
Msa1163950 MtrunA17_Chr4g0047841 52.941 119 56 0 10 128 15 133 1.51e-40 139
Msa1163950 MtrunA17_Chr8g0372121 51.587 126 56 2 6 128 2 125 2.54e-40 138
Msa1163950 MtrunA17_Chr5g0398971 51.613 124 56 2 8 128 5 127 3.77e-40 138
Msa1163950 MtrunA17_Chr4g0017921 53.226 124 53 2 8 128 6 127 4.96e-40 138
Msa1163950 MtrunA17_Chr2g0326361 50.000 120 60 0 9 128 13 132 1.15e-39 136
Msa1163950 MtrunA17_Chr3g0124761 54.622 119 51 1 10 128 7 122 5.25e-39 134
Msa1163950 MtrunA17_Chr7g0252971 48.819 127 58 2 9 128 7 133 8.40e-39 134
Msa1163950 MtrunA17_Chr2g0309331 51.220 123 56 2 9 128 9 130 8.73e-39 134
Msa1163950 MtrunA17_Chr5g0417791 48.739 119 59 1 10 128 3 119 9.10e-39 132
Msa1163950 MtrunA17_Chr7g0263931 51.261 119 58 0 10 128 11 129 1.36e-38 134
Msa1163950 MtrunA17_Chr7g0217711 51.724 116 54 1 13 128 22 135 2.70e-38 129
Msa1163950 MtrunA17_Chr8g0384721 52.941 119 53 1 10 128 7 122 3.23e-38 132
Msa1163950 MtrunA17_Chr3g0130731 52.893 121 52 2 9 128 6 122 4.05e-38 132
Msa1163950 MtrunA17_Chr5g0400461 54.264 129 52 3 7 128 3 131 1.67e-37 131
Msa1163950 MtrunA17_Chr8g0346001 48.387 124 59 2 8 128 13 134 3.19e-37 132
Msa1163950 MtrunA17_Chr2g0318081 49.242 132 61 2 1 128 3 132 1.63e-36 129
Msa1163950 MtrunA17_Chr7g0214071 50.420 119 56 1 10 128 15 130 5.17e-36 125
Msa1163950 MtrunA17_Chr8g0359921 50.833 120 57 1 9 128 13 130 1.80e-35 125
Msa1163950 MtrunA17_Chr4g0054791 51.200 125 58 2 7 128 3 127 5.01e-34 122
Msa1163950 MtrunA17_Chr1g0197351 49.180 122 58 2 9 128 41 160 8.50e-34 124
Msa1163950 MtrunA17_Chr8g0361731 39.610 154 87 1 2 149 6 159 1.82e-33 122
Msa1163950 MtrunA17_Chr3g0092671 52.500 120 52 3 12 128 7 124 1.98e-33 123
Msa1163950 MtrunA17_Chr4g0076731 48.718 117 59 1 12 128 56 171 9.96e-33 120
Msa1163950 MtrunA17_Chr1g0197361 50.833 120 54 3 12 128 10 127 1.64e-31 118
Msa1163950 MtrunA17_Chr5g0417001 44.444 117 65 0 12 128 16 132 2.51e-31 116
Msa1163950 MtrunA17_Chr6g0453131 38.411 151 87 2 10 155 15 164 3.39e-31 115
Msa1163950 MtrunA17_Chr5g0428991 50.413 121 56 2 10 128 25 143 2.55e-30 115
Msa1163950 MtrunA17_Chr3g0128151 50.000 122 57 2 9 128 21 140 2.81e-30 115
Msa1163950 MtrunA17_Chr8g0345671 47.967 123 60 3 10 129 11 132 2.91e-30 113
Msa1163950 MtrunA17_Chr1g0201021 49.580 119 56 2 12 128 21 137 3.01e-30 115
Msa1163950 MtrunA17_Chr3g0128111 49.153 118 56 2 13 128 45 160 5.61e-30 109
Msa1163950 MtrunA17_Chr4g0038751 43.333 120 63 2 12 128 17 134 1.05e-28 107
Msa1163950 MtrunA17_Chr3g0130101 46.218 119 60 2 12 128 9 125 5.64e-28 106
Msa1163950 MtrunA17_Chr8g0345691 44.715 123 64 3 10 129 12 133 6.28e-28 107
Msa1163950 MtrunA17_Chr5g0442771 43.443 122 60 2 12 128 20 137 1.06e-27 105
Msa1163950 MtrunA17_Chr8g0364791 43.802 121 64 2 10 128 6 124 1.45e-27 106
Msa1163950 MtrunA17_Chr8g0385991 42.149 121 68 1 8 128 12 130 2.09e-27 102
Msa1163950 MtrunA17_Chr2g0311661 45.000 120 63 2 12 128 23 142 8.38e-27 102
Msa1163950 MtrunA17_Chr2g0321631 43.548 124 63 3 11 128 5 127 2.11e-26 100
Msa1163950 MtrunA17_Chr2g0311651 44.167 120 64 2 12 128 24 143 2.65e-26 101
Msa1163950 MtrunA17_Chr4g0026141 41.935 124 66 3 10 128 5 127 3.27e-26 100
Msa1163950 MtrunA17_Chr8g0345711 43.307 127 68 3 6 129 8 133 9.18e-26 96.7
Msa1163950 MtrunA17_Chr3g0131911 43.902 123 65 2 8 128 12 132 5.45e-25 96.7
Msa1163950 MtrunA17_Chr8g0384201 41.322 121 67 2 10 128 6 124 1.29e-24 99.0
Msa1163950 MtrunA17_Chr4g0050701 40.336 119 63 1 10 128 11 121 1.77e-24 94.0
Msa1163950 MtrunA17_Chr8g0345701 38.060 134 66 4 5 121 2 135 6.37e-24 92.0
Msa1163950 MtrunA17_Chr7g0266701 37.302 126 72 3 9 128 3 127 1.73e-23 92.8
Msa1163950 MtrunA17_Chr8g0345721 34.969 163 68 4 4 129 24 185 4.16e-23 90.9
Msa1163950 MtrunA17_Chr8g0345731 38.519 135 79 3 10 141 24 157 4.20e-22 87.4
Msa1163950 MtrunA17_Chr3g0113001 51.724 87 35 3 43 128 1 81 5.69e-21 87.0
Msa1163950 MtrunA17_Chr2g0321741 35.484 155 77 4 30 163 12 164 1.04e-20 87.0
Msa1163950 MtrunA17_Chr7g0243371 53.846 65 30 0 64 128 18 82 1.76e-18 76.6
Msa1163950 MtrunA17_Chr8g0345741 37.500 112 66 3 21 129 2 112 1.21e-17 75.5
Msa1163950 MtrunA17_Chr8g0384351 40.741 108 49 4 10 117 10 102 2.27e-14 67.4
Msa1163950 MtrunA17_Chr3g0113031 58.929 56 21 1 73 128 3 56 3.81e-14 68.2
Msa1163950 MtrunA17_Chr3g0113011 51.064 47 23 0 10 56 19 65 3.68e-13 61.2
Msa1163950 MtrunA17_Chr7g0251651 31.452 124 79 4 7 128 15 134 6.47e-13 63.5
Msa1163950 MtrunA17_Chr7g0251671 32.593 135 75 5 1 128 1 126 1.54e-12 62.0
Msa1163950 MtrunA17_Chr3g0130321 32.308 130 60 5 10 128 7 119 7.90e-12 60.8
Msa1163950 MtrunA17_Chr3g0113041 51.163 43 21 0 14 56 23 65 2.18e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1163950 AT4G28530.1 72.917 144 23 2 1 128 1 144 3.77e-72 221
Msa1163950 AT4G28530.2 64.234 137 33 2 1 121 1 137 1.25e-57 182
Msa1163950 AT2G24430.2 53.623 138 64 0 9 146 15 152 5.89e-50 163
Msa1163950 AT2G24430.1 53.623 138 64 0 9 146 15 152 5.89e-50 163
Msa1163950 AT5G53950.1 60.504 119 47 0 10 128 17 135 3.67e-48 160
Msa1163950 AT3G12977.1 56.911 123 51 1 6 128 14 134 2.84e-47 155
Msa1163950 AT1G76420.1 59.167 120 49 0 9 128 21 140 3.13e-47 156
Msa1163950 AT3G15170.1 56.303 119 52 0 10 128 20 138 1.50e-46 154
Msa1163950 AT5G61430.1 58.824 119 47 1 10 128 16 132 1.05e-45 152
Msa1163950 AT1G56010.2 58.065 124 49 2 6 128 15 136 1.11e-45 152
Msa1163950 AT5G07680.1 57.258 124 51 1 5 128 12 133 2.47e-45 151
Msa1163950 AT5G07680.2 58.824 119 47 1 10 128 3 119 2.81e-45 151
Msa1163950 AT3G29035.1 58.824 119 47 1 10 128 24 140 6.19e-45 150
Msa1163950 AT5G39610.1 51.049 143 60 2 9 143 19 159 7.64e-45 149
Msa1163950 AT5G66300.1 54.688 128 53 2 4 128 6 131 3.14e-44 147
Msa1163950 AT3G18400.1 55.000 120 52 1 9 128 4 121 5.91e-44 147
Msa1163950 AT4G36160.1 54.331 127 53 2 5 128 5 129 2.88e-43 147
Msa1163950 AT4G36160.3 54.331 127 53 2 5 128 5 129 2.88e-43 147
Msa1163950 AT4G36160.2 54.331 127 53 2 5 128 9 133 3.03e-43 147
Msa1163950 AT3G17730.1 57.025 121 48 2 10 128 6 124 7.76e-43 143
Msa1163950 AT2G18060.3 55.285 123 50 2 9 128 8 128 1.21e-42 145
Msa1163950 AT2G18060.1 55.285 123 50 2 9 128 8 128 1.21e-42 145
Msa1163950 AT3G04070.2 49.618 131 63 1 1 128 1 131 2.45e-42 144
Msa1163950 AT3G04070.1 49.618 131 63 1 1 128 1 131 3.96e-42 144
Msa1163950 AT1G71930.2 53.968 126 53 2 6 128 5 128 4.02e-42 143
Msa1163950 AT1G71930.1 53.968 126 53 2 6 128 5 128 4.02e-42 143
Msa1163950 AT5G18270.1 57.025 121 51 1 8 128 19 138 1.56e-41 142
Msa1163950 AT5G18270.2 57.025 121 51 1 8 128 19 138 1.72e-41 142
Msa1163950 AT3G04060.1 55.833 120 52 1 9 128 19 137 1.92e-41 142
Msa1163950 AT3G03200.1 57.258 124 49 2 8 129 4 125 1.95e-41 144
Msa1163950 AT5G17260.1 55.645 124 51 2 8 129 4 125 4.62e-41 144
Msa1163950 AT1G33280.1 54.032 124 52 2 8 128 6 127 3.67e-40 137
Msa1163950 AT1G12260.2 51.613 124 55 2 8 128 5 126 4.85e-40 138
Msa1163950 AT4G10350.1 52.672 131 56 3 1 128 1 128 7.12e-40 137
Msa1163950 AT1G12260.1 51.613 124 55 2 8 128 5 126 1.19e-39 138
Msa1163950 AT1G54330.1 56.557 122 49 2 9 128 5 124 2.16e-39 135
Msa1163950 AT1G61110.1 51.908 131 59 2 1 128 4 133 4.01e-39 135
Msa1163950 AT1G62700.1 50.806 124 56 2 8 128 5 126 7.39e-39 136
Msa1163950 AT1G62700.2 50.806 124 56 2 8 128 5 126 7.39e-39 136
Msa1163950 AT1G69490.1 49.587 121 59 1 8 128 7 125 1.18e-38 132
Msa1163950 AT1G65910.1 56.098 123 50 2 8 128 4 124 1.88e-38 138
Msa1163950 AT5G62380.2 51.613 124 55 2 8 128 5 126 2.32e-38 134
Msa1163950 AT5G62380.1 51.613 124 55 2 8 128 5 126 2.32e-38 134
Msa1163950 AT5G08790.1 52.500 120 54 1 9 128 6 122 6.00e-38 131
Msa1163950 AT1G32770.1 46.774 124 61 2 8 128 14 135 7.40e-38 133
Msa1163950 AT1G01720.1 52.941 119 53 1 10 128 7 122 8.45e-38 131
Msa1163950 AT2G46770.1 48.387 124 59 2 8 128 14 135 8.92e-38 133
Msa1163950 AT1G79580.3 51.220 123 56 2 9 128 16 137 1.49e-37 132
Msa1163950 AT1G79580.5 51.220 123 56 2 9 128 16 137 1.49e-37 132
Msa1163950 AT1G79580.4 51.220 123 56 2 9 128 16 137 1.49e-37 132
Msa1163950 AT1G79580.2 51.220 123 56 2 9 128 16 137 1.49e-37 132
Msa1163950 AT1G79580.1 51.220 123 56 2 9 128 16 137 1.49e-37 132
Msa1163950 AT3G61910.1 49.194 124 58 2 8 128 9 130 2.17e-37 131
Msa1163950 AT5G46590.2 50.794 126 58 3 6 128 1 125 6.88e-37 128
Msa1163950 AT5G63790.1 52.066 121 55 1 9 129 49 166 7.21e-37 129
Msa1163950 AT5G46590.1 50.794 126 58 3 6 128 1 125 9.83e-37 128
Msa1163950 AT5G63790.2 52.066 121 55 1 9 129 59 176 9.90e-37 129
Msa1163950 AT4G17980.1 52.381 126 57 2 6 128 1 126 1.29e-36 127
Msa1163950 AT1G77450.1 50.806 124 56 2 7 128 5 125 1.51e-36 127
Msa1163950 AT3G10490.1 48.062 129 63 2 2 128 19 145 1.58e-36 126
Msa1163950 AT3G15510.1 50.435 115 57 0 14 128 21 135 2.00e-36 129
Msa1163950 AT4G17980.2 52.381 126 57 2 6 128 1 126 3.15e-36 127
Msa1163950 AT3G15500.1 49.242 132 61 2 1 128 1 130 3.72e-36 127
Msa1163950 AT4G27410.2 48.485 132 62 2 1 128 1 130 5.69e-36 126
Msa1163950 AT3G10480.2 50.806 124 57 2 7 128 24 145 7.61e-36 129
Msa1163950 AT3G10480.1 50.806 124 57 2 7 128 24 145 7.79e-36 129
Msa1163950 AT1G32510.1 47.857 140 63 3 6 138 2 138 1.25e-35 125
Msa1163950 AT1G52890.1 51.667 120 56 1 9 128 13 130 1.55e-35 126
Msa1163950 AT4G35580.1 55.738 122 50 2 9 128 8 127 2.02e-35 129
Msa1163950 AT4G35580.3 55.738 122 50 2 9 128 8 127 2.52e-35 129
Msa1163950 AT4G35580.2 55.738 122 50 2 9 128 8 127 2.96e-35 129
Msa1163950 AT3G10490.2 48.062 129 63 2 2 128 19 145 3.06e-35 127
Msa1163950 AT1G33060.1 52.846 123 54 2 9 129 23 143 3.97e-35 129
Msa1163950 AT1G33060.2 52.846 123 54 2 9 129 23 143 4.36e-35 129
Msa1163950 AT3G10500.1 51.639 122 55 2 9 128 8 127 1.47e-34 127
Msa1163950 AT5G04410.1 50.820 122 56 2 9 128 8 127 2.87e-34 126
Msa1163950 AT5G24590.2 52.033 123 56 2 8 128 11 132 1.30e-33 123
Msa1163950 AT5G39820.1 45.299 117 64 0 12 128 22 138 1.91e-33 121
Msa1163950 AT2G02450.1 47.458 118 61 1 12 129 53 169 4.58e-33 120
Msa1163950 AT2G02450.2 47.458 118 61 1 12 129 53 169 6.54e-33 121
Msa1163950 AT5G13180.1 47.899 119 59 1 10 128 14 129 1.13e-32 117
Msa1163950 AT4G27410.3 44.295 149 60 4 1 128 1 147 2.18e-32 117
Msa1163950 AT2G33480.2 49.580 119 55 2 10 128 15 128 3.50e-32 116
Msa1163950 AT2G33480.1 49.580 119 55 2 10 128 15 128 3.55e-32 116
Msa1163950 AT1G26870.1 42.520 127 73 0 2 128 8 134 8.61e-32 118
Msa1163950 AT3G49530.2 48.361 122 60 2 9 128 12 132 1.89e-31 117
Msa1163950 AT2G27300.1 47.541 122 61 2 8 128 12 131 2.43e-31 115
Msa1163950 AT3G49530.1 48.361 122 60 2 9 128 12 132 2.66e-31 117
Msa1163950 AT2G43000.1 45.299 117 62 1 12 128 20 134 8.87e-31 112
Msa1163950 AT1G34180.3 46.218 119 60 2 12 128 18 134 2.61e-30 114
Msa1163950 AT1G34180.1 46.218 119 60 2 12 128 18 134 3.62e-30 115
Msa1163950 AT3G10480.3 40.506 158 57 3 7 129 24 179 3.64e-30 115
Msa1163950 AT1G34190.1 45.378 119 61 2 12 128 18 134 4.45e-30 114
Msa1163950 AT1G52880.1 47.863 117 59 1 14 128 21 137 7.51e-30 111
Msa1163950 AT5G04395.1 42.254 142 68 2 1 128 19 160 2.52e-29 106
Msa1163950 AT5G09330.5 40.940 149 80 4 10 156 6 148 3.42e-29 112
Msa1163950 AT5G09330.2 40.940 149 80 4 10 156 6 148 3.42e-29 112
Msa1163950 AT5G09330.4 40.940 149 80 4 10 156 6 148 3.42e-29 112
Msa1163950 AT5G09330.3 40.940 149 80 4 10 156 6 148 3.42e-29 112
Msa1163950 AT5G09330.1 40.940 149 80 4 10 156 6 148 3.42e-29 112
Msa1163950 AT2G17040.1 43.220 118 66 1 12 128 8 125 6.34e-29 107
Msa1163950 AT1G34180.4 41.985 131 60 2 12 128 18 146 2.63e-28 109
Msa1163950 AT1G34180.2 41.985 131 60 2 12 128 18 146 3.58e-28 109
Msa1163950 AT1G32870.1 45.205 146 71 4 1 144 1 139 1.71e-27 107
Msa1163950 AT1G32870.2 45.205 146 71 4 1 144 1 139 1.94e-27 107
Msa1163950 AT1G32870.3 45.205 146 71 4 1 144 37 175 2.24e-27 107
Msa1163950 AT3G44290.2 41.406 128 69 3 12 138 16 138 6.99e-27 101
Msa1163950 AT5G22290.1 38.889 144 78 4 4 139 10 151 3.59e-26 102
Msa1163950 AT3G44290.1 41.406 128 69 3 12 138 16 138 4.52e-26 101
Msa1163950 AT3G12977.2 62.162 74 26 1 55 128 10 81 1.06e-25 98.6
Msa1163950 AT3G12910.1 46.667 120 60 3 12 128 23 141 3.62e-25 98.6
Msa1163950 AT3G44350.1 42.188 128 68 3 6 128 1 127 1.91e-24 93.6
Msa1163950 AT1G56010.1 64.789 71 23 1 58 128 1 69 1.92e-24 95.9
Msa1163950 AT5G64060.1 40.164 122 69 2 9 128 5 124 2.80e-24 97.1
Msa1163950 AT5G61430.2 63.380 71 24 1 58 128 1 69 6.75e-24 94.7
Msa1163950 AT3G44350.2 42.188 128 68 3 6 128 1 127 8.59e-24 94.0
Msa1163950 AT4G10350.2 63.077 65 22 1 64 128 19 81 8.20e-22 89.7
Msa1163950 AT5G22380.1 40.164 122 66 3 13 128 8 128 8.69e-22 88.6
Msa1163950 AT5G64530.2 37.273 110 61 1 9 118 2 103 6.83e-21 84.3
Msa1163950 AT4G01550.1 41.322 121 65 4 13 128 7 126 1.02e-20 88.2
Msa1163950 AT5G64530.1 37.273 110 61 1 9 118 2 103 3.65e-20 83.2
Msa1163950 AT1G02230.1 39.024 123 67 5 11 128 4 123 2.66e-18 80.9
Msa1163950 AT4G01520.1 37.398 123 72 4 11 128 5 127 1.74e-17 78.2
Msa1163950 AT3G04420.2 32.168 143 91 3 11 149 4 144 3.43e-17 77.0
Msa1163950 AT3G04420.1 32.168 143 91 3 11 149 4 144 5.48e-17 77.0
Msa1163950 AT4G01540.2 37.190 121 71 4 13 128 7 127 1.13e-16 76.6
Msa1163950 AT4G01540.1 37.190 121 71 4 13 128 7 127 1.17e-16 76.6
Msa1163950 AT4G01540.4 37.190 121 71 4 13 128 7 127 1.25e-16 76.3
Msa1163950 AT4G01540.3 37.190 121 71 4 13 128 7 127 1.34e-16 76.3
Msa1163950 AT2G33480.3 55.385 65 27 1 64 128 9 71 5.09e-16 72.8
Msa1163950 AT5G14000.2 30.000 140 90 3 7 142 12 147 8.40e-15 68.2
Msa1163950 AT3G04430.1 37.037 108 64 4 16 121 6 111 1.95e-14 68.2
Msa1163950 AT1G02220.1 33.043 115 71 3 11 121 4 116 3.81e-14 69.3
Msa1163950 AT1G02250.1 34.821 112 68 3 11 117 4 115 3.91e-14 69.3
Msa1163950 AT5G14000.1 30.000 140 90 3 7 142 12 147 4.93e-14 67.4
Msa1163950 AT1G01010.1 35.714 126 69 4 13 128 6 129 3.19e-13 66.6
Msa1163950 AT5G50820.1 34.375 128 60 5 10 128 17 129 1.66e-11 60.1

Find 72 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAACCGTGCTATTATTATT+TGG 0.209937 7_4:+55415831 None:intergenic
GAGAGAGTTAATCACTTAAT+AGG 0.254006 7_4:+55419786 None:intergenic
CTGAAGCCACACCATCTTCT+AGG 0.277699 7_4:+55415742 None:intergenic
CACAAATGAGGAAGTTCTTA+AGG 0.329369 7_4:-55419522 Msa1163950:CDS
ACAAACAGAGCAACTATATC+TGG 0.343800 7_4:-55417189 Msa1163950:CDS
ATGGTATTTCTTTAGCTTCC+GGG 0.345420 7_4:-55417238 Msa1163950:CDS
GAGCAACTATATCTGGATAT+TGG 0.349161 7_4:-55417182 Msa1163950:CDS
GCTCCAAATGGTATCAAAAC+AGG 0.356435 7_4:-55417069 Msa1163950:CDS
TCATCATGGAAGAATTGTTT+TGG 0.356600 7_4:+55415883 None:intergenic
TGTGAACCATGGCAGCTTCC+AGG 0.356905 7_4:-55419470 Msa1163950:intron
ATTCTTGTGGAACATGGATT+TGG 0.363780 7_4:-55415775 Msa1163950:three_prime_UTR
TCTGGATATTGGAAAGCAAC+TGG 0.367759 7_4:-55417171 Msa1163950:CDS
GAGATGATGACATCAAAGTT+AGG 0.374943 7_4:+55415992 None:intergenic
CCTACAACCTCTTGTGTGAT+TGG 0.380585 7_4:+55417126 None:intergenic
TTATCCAAGTGATGAGGAAT+TGG 0.381621 7_4:-55419570 Msa1163950:CDS
GAATTGTTGTGTGTTGAGTT+TGG 0.385310 7_4:+55416038 None:intergenic
TCCAAAGGTGATGATGGATA+TGG 0.397088 7_4:-55415798 Msa1163950:three_prime_UTR
AATGGTATTTCTTTAGCTTC+CGG 0.397370 7_4:-55417239 Msa1163950:CDS
ATTAATTTCCTTTGAGTCAT+GGG 0.405147 7_4:-55419635 Msa1163950:exon
TATAGCCACTAGGGATGGTT+TGG 0.417138 7_4:+55415959 None:intergenic
GGGATGGTTTGGTAATTTGT+TGG 0.418314 7_4:+55415970 None:intergenic
TAAATCCAGTTGCATATTTG+CGG 0.420581 7_4:+55417214 None:intergenic
TCCATATCCATCATCACCTT+TGG 0.424892 7_4:+55415797 None:intergenic
GAAAGACATTGGTGTTCTAT+AGG 0.425789 7_4:-55417098 Msa1163950:CDS
TTCAAGGAATGAAAGAGAAA+AGG 0.434645 7_4:+55419682 None:intergenic
CGGGACCGCAAATATGCAAC+TGG 0.444721 7_4:-55417219 Msa1163950:CDS
TTTGTTGATCACAGGAGGAC+TGG 0.451819 7_4:-55416119 Msa1163950:intron
CAGTTGCATATTTGCGGTCC+CGG 0.454823 7_4:+55417220 None:intergenic
CCAATCACACAAGAGGTTGT+AGG 0.461134 7_4:-55417126 Msa1163950:CDS
ATTAGTTCCAAAGGTGATGA+TGG 0.463352 7_4:-55415804 Msa1163950:three_prime_UTR
AATTAATTTCCTTTGAGTCA+TGG 0.466324 7_4:-55419636 Msa1163950:exon
CACACCAATTCCTCATCACT+TGG 0.483760 7_4:+55419566 None:intergenic
CTTGGATAAAATCGAAATCC+AGG 0.488698 7_4:+55419584 None:intergenic
TTGTTGATCACAGGAGGACT+GGG 0.497348 7_4:-55416118 Msa1163950:intron
CTCTCAAACCCATGACTCAA+AGG 0.497598 7_4:+55419627 None:intergenic
ACAAATGAGGAAGTTCTTAA+GGG 0.506795 7_4:-55419521 Msa1163950:CDS
CTGTTTCACGAGAATATTGA+AGG 0.508957 7_4:+55415856 None:intergenic
AGATGATGACATCAAAGTTA+GGG 0.519573 7_4:+55415993 None:intergenic
CAATCACACAAGAGGTTGTA+GGG 0.525240 7_4:-55417125 Msa1163950:CDS
CAAGTTTGTTATAGCCACTA+GGG 0.529795 7_4:+55415950 None:intergenic
ATAGGAGCTTCACTACCTCC+TGG 0.533290 7_4:-55419602 Msa1163950:CDS
TTTGTATAAAGAAAGAAATG+TGG 0.541065 7_4:+55419740 None:intergenic
CTGGATATTGGAAAGCAACT+GGG 0.545781 7_4:-55417170 Msa1163950:CDS
TAAATGATGAAGTGTTGTCA+TGG 0.547733 7_4:+55415914 None:intergenic
AGATGGTGTGGCTTCAGACT+TGG 0.547899 7_4:-55415736 Msa1163950:three_prime_UTR
TATATACCTGGAAGCTGCCA+TGG 0.548318 7_4:+55419464 None:intergenic
GAAGAAAATAGCCTAGAAGA+TGG 0.553895 7_4:-55415753 Msa1163950:three_prime_UTR
CAAAGCTTAATGCAAATGAA+TGG 0.555762 7_4:-55417257 Msa1163950:CDS
ATATGGATTCTTGTGGAACA+TGG 0.561084 7_4:-55415781 Msa1163950:three_prime_UTR
AAATGATGAAGTGTTGTCAT+GGG 0.565391 7_4:+55415915 None:intergenic
TAATGTGTATAATTGAAGCT+TGG 0.566960 7_4:+55419764 None:intergenic
TCAAGTTTGTTATAGCCACT+AGG 0.572027 7_4:+55415949 None:intergenic
TTTGTTATAGCCACTAGGGA+TGG 0.575379 7_4:+55415954 None:intergenic
GTTACTCAAATTAGTTCCAA+AGG 0.576717 7_4:-55415813 Msa1163950:three_prime_UTR
GTCATGGGTTTGAGAGACAT+AGG 0.581509 7_4:-55419620 Msa1163950:CDS
AGCAACTGGGAAAGATCGTA+TGG 0.583285 7_4:-55417157 Msa1163950:CDS
TATAGGAATAGAGCTCCAAA+TGG 0.588028 7_4:-55417081 Msa1163950:CDS
TGTAGGGATGAGAAAGACAT+TGG 0.588790 7_4:-55417109 Msa1163950:CDS
GATGACATCAAAGTTAGGGA+TGG 0.596756 7_4:+55415997 None:intergenic
CTCCAAATGGTATCAAAACA+GGG 0.600706 7_4:-55417068 Msa1163950:intron
GACATCAAAGTTAGGGATGG+AGG 0.613884 7_4:+55416000 None:intergenic
ATATTGAAGGAGATTCATCA+TGG 0.619903 7_4:+55415869 None:intergenic
AAATAGCCTAGAAGATGGTG+TGG 0.624894 7_4:-55415748 Msa1163950:three_prime_UTR
GCCATGGTTCACATATGTGA+AGG 0.625702 7_4:+55419480 None:intergenic
ATGATGGATATGGATTCTTG+TGG 0.648298 7_4:-55415788 Msa1163950:three_prime_UTR
AGATCCAAATAATAATAGCA+CGG 0.654615 7_4:-55415835 Msa1163950:three_prime_UTR
GTTAGATCCAATCACACAAG+AGG 0.657130 7_4:-55417133 Msa1163950:CDS
AATGATGAAGTGTTGTCATG+GGG 0.659787 7_4:+55415916 None:intergenic
ATGATGAAGTGTTGTCATGG+GGG 0.660202 7_4:+55415917 None:intergenic
ACCTTCACATATGTGAACCA+TGG 0.672346 7_4:-55419481 Msa1163950:CDS
AATTACCAAACCATCCCTAG+TGG 0.692848 7_4:-55415964 Msa1163950:three_prime_UTR
GGATAAAATCGAAATCCAGG+AGG 0.731687 7_4:+55419587 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTTTTTTTTTTA+TGG + chr7_4:55417702-55417721 None:intergenic 0.0%
!! AAAAAAAAAAAAAAATTTAA+AGG - chr7_4:55417706-55417725 Msa1163950:intron 0.0%
!! TTTATATGAAAAAAATACAA+GGG + chr7_4:55417133-55417152 None:intergenic 10.0%
!!! TTTTATATGAAAAAAATACA+AGG + chr7_4:55417134-55417153 None:intergenic 10.0%
!!! TTTAAGATAGATAAAAAAAT+TGG - chr7_4:55417300-55417319 Msa1163950:intron 10.0%
!! AAAAAAAAAAATTTAAAGGA+AGG - chr7_4:55417710-55417729 Msa1163950:intron 10.0%
!!! AAATAGCTTTTTAATTTTTA+TGG + chr7_4:55417742-55417761 None:intergenic 10.0%
!!! ATCAAAAGTATAAAAATTAA+GGG - chr7_4:55418633-55418652 Msa1163950:intron 10.0%
!!! AGAACTTATTTTATTTAATA+TGG + chr7_4:55418993-55419012 None:intergenic 10.0%
!!! TTAATAATTTGTTTGATTTC+TGG - chr7_4:55416182-55416201 Msa1163950:intron 15.0%
!!! ATTGGAATTTTTTTTTTGAA+GGG + chr7_4:55417094-55417113 None:intergenic 15.0%
!! TTTCAAATAACAAAATCAAT+TGG - chr7_4:55417670-55417689 Msa1163950:intron 15.0%
!!! TTTGCTACTAATTTTTTTAA+AGG + chr7_4:55417896-55417915 None:intergenic 15.0%
!!! CATCAAAAGTATAAAAATTA+AGG - chr7_4:55418632-55418651 Msa1163950:intron 15.0%
!!! TTTTTTTTAAAATGCGAAAA+TGG + chr7_4:55419231-55419250 None:intergenic 15.0%
!!! GCATTTTAAAAAAAATCTAA+GGG - chr7_4:55419236-55419255 Msa1163950:intron 15.0%
!! TATGACAAATGAAAAATAAA+AGG - chr7_4:55419281-55419300 Msa1163950:intron 15.0%
!!! CACATATATTTTTGTTAATT+AGG - chr7_4:55419374-55419393 Msa1163950:intron 15.0%
!! TTTGTATAAAGAAAGAAATG+TGG + chr7_4:55415786-55415805 None:intergenic 20.0%
!!! GAAATTTAATGAAGATTTTG+TGG + chr7_4:55415822-55415841 None:intergenic 20.0%
!! AATTATCTGAATTATCTTCA+TGG - chr7_4:55416138-55416157 Msa1163950:intron 20.0%
!! TTTCCATATTTAGCAAAATA+TGG + chr7_4:55416424-55416443 None:intergenic 20.0%
!! AGAATACAAGAAAAATAGAA+AGG - chr7_4:55416513-55416532 Msa1163950:intron 20.0%
!! GAATACAAGAAAAATAGAAA+GGG - chr7_4:55416514-55416533 Msa1163950:intron 20.0%
!!! TTTTCTTCTTTCAGTTAAAA+CGG - chr7_4:55416802-55416821 Msa1163950:intron 20.0%
!!! AGATAATATTTATCCTTTTG+CGG - chr7_4:55416849-55416868 Msa1163950:intron 20.0%
!! CTAAGAATAATATTACTGTA+TGG + chr7_4:55416998-55417017 None:intergenic 20.0%
!!! TTGGAATTTTTTTTTTGAAG+GGG + chr7_4:55417093-55417112 None:intergenic 20.0%
!!! GATTGGAATTTTTTTTTTGA+AGG + chr7_4:55417095-55417114 None:intergenic 20.0%
!!! GCTATTTTTTTATATACGTA+CGG - chr7_4:55417755-55417774 Msa1163950:intron 20.0%
!!! CTATTTTTTTATATACGTAC+GGG - chr7_4:55417756-55417775 Msa1163950:intron 20.0%
!!! ATTTGGAACTTGAAAAAAAT+TGG - chr7_4:55418016-55418035 Msa1163950:intron 20.0%
!! TATGGATAAAGAAGAAAAAA+GGG - chr7_4:55418823-55418842 Msa1163950:intron 20.0%
!!! GTTTTTAAATGATTGAATGT+TGG - chr7_4:55418935-55418954 Msa1163950:intron 20.0%
!! AAGTAAAAATTCATTCGTAT+TGG - chr7_4:55419032-55419051 Msa1163950:intron 20.0%
!!! CGCATTTTAAAAAAAATCTA+AGG - chr7_4:55419235-55419254 Msa1163950:intron 20.0%
! TAATGTGTATAATTGAAGCT+TGG + chr7_4:55415762-55415781 None:intergenic 25.0%
! TTAAAAAGAAAGGAGATTCA+AGG + chr7_4:55415860-55415879 None:intergenic 25.0%
! AATTAATTTCCTTTGAGTCA+TGG - chr7_4:55415887-55415906 Msa1163950:three_prime_UTR 25.0%
! ATTAATTTCCTTTGAGTCAT+GGG - chr7_4:55415888-55415907 Msa1163950:three_prime_UTR 25.0%
! TTACAAAAAGATCACAAATG+AGG - chr7_4:55415989-55416008 Msa1163950:three_prime_UTR 25.0%
! GCATAATTAACATATATACC+TGG + chr7_4:55416074-55416093 None:intergenic 25.0%
!!! AATCTAAGAAAGTGTTCTTT+TGG + chr7_4:55416455-55416474 None:intergenic 25.0%
! ATTAATTGATGTAGATTTGC+TGG - chr7_4:55416653-55416672 Msa1163950:intron 25.0%
! ACAAGACAACTATATACAAA+AGG + chr7_4:55416693-55416712 None:intergenic 25.0%
!!! TTTGAGTTCTATTTTCTACA+AGG - chr7_4:55416748-55416767 Msa1163950:intron 25.0%
! AGAAGAAAAATGATGAGATA+AGG + chr7_4:55416791-55416810 None:intergenic 25.0%
! ATCTTAAACGTAAAACTGAA+GGG + chr7_4:55417288-55417307 None:intergenic 25.0%
! TATCTTAAACGTAAAACTGA+AGG + chr7_4:55417289-55417308 None:intergenic 25.0%
! TTTCCTATATTTCATCATGA+GGG + chr7_4:55417537-55417556 None:intergenic 25.0%
!! TTTTCCTATATTTCATCATG+AGG + chr7_4:55417538-55417557 None:intergenic 25.0%
!!! TTTTATTTTTGTGTGTAACC+CGG - chr7_4:55417625-55417644 Msa1163950:intron 25.0%
!!! TCTTACTTTTTATTTTACCC+GGG + chr7_4:55417646-55417665 None:intergenic 25.0%
!!! CTCTTACTTTTTATTTTACC+CGG + chr7_4:55417647-55417666 None:intergenic 25.0%
! GAAATGAGATAATAGTAAGA+AGG - chr7_4:55417844-55417863 Msa1163950:intron 25.0%
!!! ACTCTATTTGCCTTTTTTTA+GGG + chr7_4:55417924-55417943 None:intergenic 25.0%
!!! TACTCTATTTGCCTTTTTTT+AGG + chr7_4:55417925-55417944 None:intergenic 25.0%
! TTCAAAATTTGTAACCACTA+TGG - chr7_4:55417962-55417981 Msa1163950:intron 25.0%
! ATAATATCATCCATCTTCTA+TGG - chr7_4:55418805-55418824 Msa1163950:intron 25.0%
! CTATGGATAAAGAAGAAAAA+AGG - chr7_4:55418822-55418841 Msa1163950:intron 25.0%
! ACATCAAGAATAAAACATGA+AGG - chr7_4:55418884-55418903 Msa1163950:intron 25.0%
! CATCAAGAATAAAACATGAA+GGG - chr7_4:55418885-55418904 Msa1163950:intron 25.0%
! AAGTTCTATTAGTTAGTTGT+TGG - chr7_4:55419006-55419025 Msa1163950:intron 25.0%
! TAAAAATTCATTCGTATTGG+TGG - chr7_4:55419035-55419054 Msa1163950:intron 25.0%
!! AAAAGGTTACCTTAATTTGA+TGG - chr7_4:55419298-55419317 Msa1163950:intron 25.0%
! AGATCCAAATAATAATAGCA+CGG - chr7_4:55419688-55419707 Msa1163950:five_prime_UTR 25.0%
GAGAGAGTTAATCACTTAAT+AGG + chr7_4:55415740-55415759 None:intergenic 30.0%
TTCAAGGAATGAAAGAGAAA+AGG + chr7_4:55415844-55415863 None:intergenic 30.0%
ACAAATGAGGAAGTTCTTAA+GGG - chr7_4:55416002-55416021 Msa1163950:exon 30.0%
!!! AATAACCTATGTTTTGAGGT+TGG + chr7_4:55416294-55416313 None:intergenic 30.0%
! GTGAAATAACCTATGTTTTG+AGG + chr7_4:55416298-55416317 None:intergenic 30.0%
! CTGCCATATTTTGCTAAATA+TGG - chr7_4:55416418-55416437 Msa1163950:intron 30.0%
TTCCACAACCAAAAGAAAAT+AGG - chr7_4:55416473-55416492 Msa1163950:intron 30.0%
! CTTTCTCTCCTATTTTCTTT+TGG + chr7_4:55416484-55416503 None:intergenic 30.0%
ACAAGAAAAATAGAAAGGGA+TGG - chr7_4:55416518-55416537 Msa1163950:intron 30.0%
AAAAATAGAAAGGGATGGAA+AGG - chr7_4:55416523-55416542 Msa1163950:intron 30.0%
! ACTTTGTATTTTACCGCAAA+AGG + chr7_4:55416865-55416884 None:intergenic 30.0%
TAGAGAGTCATATCAAAGAA+AGG + chr7_4:55417454-55417473 None:intergenic 30.0%
TTCCTATATTTCATCATGAG+GGG + chr7_4:55417536-55417555 None:intergenic 30.0%
!!! TTTATTTTTGTGTGTAACCC+GGG - chr7_4:55417626-55417645 Msa1163950:intron 30.0%
TGAGATAATAGTAAGAAGGA+AGG - chr7_4:55417848-55417867 Msa1163950:intron 30.0%
AAAAGGCAAATAGAGTAACT+TGG - chr7_4:55417928-55417947 Msa1163950:intron 30.0%
GTTGTTGTCTATATAGTTGT+TGG - chr7_4:55418172-55418191 Msa1163950:intron 30.0%
GCATGAAATTAACACATGAT+GGG + chr7_4:55418229-55418248 None:intergenic 30.0%
TGCATGAAATTAACACATGA+TGG + chr7_4:55418230-55418249 None:intergenic 30.0%
CAAAGCTTAATGCAAATGAA+TGG - chr7_4:55418266-55418285 Msa1163950:intron 30.0%
! AATGGTATTTCTTTAGCTTC+CGG - chr7_4:55418284-55418303 Msa1163950:intron 30.0%
TAAATCCAGTTGCATATTTG+CGG + chr7_4:55418312-55418331 None:intergenic 30.0%
ATACATAGAAAACTCACCTT+AGG + chr7_4:55418523-55418542 None:intergenic 30.0%
TCTTCTTTATCCATAGAAGA+TGG + chr7_4:55418818-55418837 None:intergenic 30.0%
! CTAATGCCAATTTTGTGTTA+GGG - chr7_4:55419068-55419087 Msa1163950:intron 30.0%
! TAATGCCAATTTTGTGTTAG+GGG - chr7_4:55419069-55419088 Msa1163950:intron 30.0%
AAATACACGCCATCAAATTA+AGG + chr7_4:55419310-55419329 None:intergenic 30.0%
!!! AATTTGATGGCGTGTATTTT+TGG - chr7_4:55419311-55419330 Msa1163950:intron 30.0%
! GTCAAATTTTTGTTGATCAC+AGG - chr7_4:55419396-55419415 Msa1163950:intron 30.0%
! AAATTTTTGTTGATCACAGG+AGG - chr7_4:55419399-55419418 Msa1163950:intron 30.0%
AGATGATGACATCAAAGTTA+GGG + chr7_4:55419533-55419552 None:intergenic 30.0%
!! AAATGATGAAGTGTTGTCAT+GGG + chr7_4:55419611-55419630 None:intergenic 30.0%
!! TAAATGATGAAGTGTTGTCA+TGG + chr7_4:55419612-55419631 None:intergenic 30.0%
!!! ATGGAAGAATTGTTTTGGTT+TGG + chr7_4:55419638-55419657 None:intergenic 30.0%
! TCATCATGGAAGAATTGTTT+TGG + chr7_4:55419643-55419662 None:intergenic 30.0%
ATATTGAAGGAGATTCATCA+TGG + chr7_4:55419657-55419676 None:intergenic 30.0%
! GTAACCGTGCTATTATTATT+TGG + chr7_4:55419695-55419714 None:intergenic 30.0%
GTTACTCAAATTAGTTCCAA+AGG - chr7_4:55419710-55419729 Msa1163950:five_prime_UTR 30.0%
CTTGGATAAAATCGAAATCC+AGG + chr7_4:55415942-55415961 None:intergenic 35.0%
! TCGATTTTATCCAAGTGATG+AGG - chr7_4:55415947-55415966 Msa1163950:three_prime_UTR 35.0%
TTATCCAAGTGATGAGGAAT+TGG - chr7_4:55415953-55415972 Msa1163950:three_prime_UTR 35.0%
CACAAATGAGGAAGTTCTTA+AGG - chr7_4:55416001-55416020 Msa1163950:exon 35.0%
GTACGAAAGACACAAACAAA+AGG + chr7_4:55416256-55416275 None:intergenic 35.0%
GAATACCAACCTCAAAACAT+AGG - chr7_4:55416286-55416305 Msa1163950:intron 35.0%
AACAACTAGAGACAGAACAA+AGG + chr7_4:55416359-55416378 None:intergenic 35.0%
TTGTCAGATCAAGTTCATGA+AGG + chr7_4:55416392-55416411 None:intergenic 35.0%
!! CTCCTATTTTCTTTTGGTTG+TGG + chr7_4:55416478-55416497 None:intergenic 35.0%
!!! TTTTTTGAAGGGGCAATGAT+TGG + chr7_4:55417083-55417102 None:intergenic 35.0%
AAATTCCAATCATTGCAGCA+AGG - chr7_4:55417104-55417123 Msa1163950:CDS 35.0%
ATCAACACTGCTGTCTTTAA+CGG - chr7_4:55417379-55417398 Msa1163950:intron 35.0%
GCAAATGCTTCCCTAAAAAA+AGG - chr7_4:55417911-55417930 Msa1163950:intron 35.0%
TTTCATGACATCAACCATAG+TGG + chr7_4:55417979-55417998 None:intergenic 35.0%
GTCATATGTCTATTGTGTGT+TGG + chr7_4:55418070-55418089 None:intergenic 35.0%
AACAACACGTGACTAAGTTA+AGG + chr7_4:55418158-55418177 None:intergenic 35.0%
! ATGGTATTTCTTTAGCTTCC+GGG - chr7_4:55418285-55418304 Msa1163950:intron 35.0%
ACAAACAGAGCAACTATATC+TGG - chr7_4:55418334-55418353 Msa1163950:intron 35.0%
GAGCAACTATATCTGGATAT+TGG - chr7_4:55418341-55418360 Msa1163950:intron 35.0%
! GAAAGACATTGGTGTTCTAT+AGG - chr7_4:55418425-55418444 Msa1163950:intron 35.0%
TATAGGAATAGAGCTCCAAA+TGG - chr7_4:55418442-55418461 Msa1163950:intron 35.0%
CTCCAAATGGTATCAAAACA+GGG - chr7_4:55418455-55418474 Msa1163950:intron 35.0%
ACCACATTGGCAAAATGATA+GGG + chr7_4:55418548-55418567 None:intergenic 35.0%
! GCTAATGCCAATTTTGTGTT+AGG - chr7_4:55419067-55419086 Msa1163950:intron 35.0%
ATGAACCCCTAACACAAAAT+TGG + chr7_4:55419077-55419096 None:intergenic 35.0%
GAATTGTTGTGTGTTGAGTT+TGG + chr7_4:55419488-55419507 None:intergenic 35.0%
GAGATGATGACATCAAAGTT+AGG + chr7_4:55419534-55419553 None:intergenic 35.0%
!! CAAGTTTGTTATAGCCACTA+GGG + chr7_4:55419576-55419595 None:intergenic 35.0%
!! TCAAGTTTGTTATAGCCACT+AGG + chr7_4:55419577-55419596 None:intergenic 35.0%
!! AATGATGAAGTGTTGTCATG+GGG + chr7_4:55419610-55419629 None:intergenic 35.0%
CTGTTTCACGAGAATATTGA+AGG + chr7_4:55419670-55419689 None:intergenic 35.0%
ATTAGTTCCAAAGGTGATGA+TGG - chr7_4:55419719-55419738 Msa1163950:five_prime_UTR 35.0%
!! ATGATGGATATGGATTCTTG+TGG - chr7_4:55419735-55419754 Msa1163950:five_prime_UTR 35.0%
ATATGGATTCTTGTGGAACA+TGG - chr7_4:55419742-55419761 Msa1163950:five_prime_UTR 35.0%
ATTCTTGTGGAACATGGATT+TGG - chr7_4:55419748-55419767 Msa1163950:five_prime_UTR 35.0%
GAAGAAAATAGCCTAGAAGA+TGG - chr7_4:55419770-55419789 Msa1163950:five_prime_UTR 35.0%
GGATAAAATCGAAATCCAGG+AGG + chr7_4:55415939-55415958 None:intergenic 40.0%
ACCTTCACATATGTGAACCA+TGG - chr7_4:55416042-55416061 Msa1163950:CDS 40.0%
GTCCCCTCATGATGAAATAT+AGG - chr7_4:55417531-55417550 Msa1163950:intron 40.0%
AGGCAAATAGAGTAACTTGG+AGG - chr7_4:55417931-55417950 Msa1163950:intron 40.0%
! TGTCATGAAACACTAGTCTG+TGG - chr7_4:55417989-55418008 Msa1163950:intron 40.0%
! CACTAGTCTGTGGTAAGATT+TGG - chr7_4:55417999-55418018 Msa1163950:intron 40.0%
GACTAAGTTAAGGTAAGGTC+AGG + chr7_4:55418148-55418167 None:intergenic 40.0%
CACGTGACTAAGTTAAGGTA+AGG + chr7_4:55418153-55418172 None:intergenic 40.0%
ATTTCATGCATTGCATGCAG+AGG - chr7_4:55418240-55418259 Msa1163950:intron 40.0%
TCTGGATATTGGAAAGCAAC+TGG - chr7_4:55418352-55418371 Msa1163950:intron 40.0%
CTGGATATTGGAAAGCAACT+GGG - chr7_4:55418353-55418372 Msa1163950:intron 40.0%
GTTAGATCCAATCACACAAG+AGG - chr7_4:55418390-55418409 Msa1163950:intron 40.0%
CAATCACACAAGAGGTTGTA+GGG - chr7_4:55418398-55418417 Msa1163950:intron 40.0%
TGTAGGGATGAGAAAGACAT+TGG - chr7_4:55418414-55418433 Msa1163950:intron 40.0%
GCTCCAAATGGTATCAAAAC+AGG - chr7_4:55418454-55418473 Msa1163950:intron 40.0%
!!! CACCCTGTTTTGATACCATT+TGG + chr7_4:55418460-55418479 None:intergenic 40.0%
CAAATGGTATCAAAACAGGG+TGG - chr7_4:55418458-55418477 Msa1163950:intron 40.0%
CATAGAAAACTCACCTTAGG+AGG + chr7_4:55418520-55418539 None:intergenic 40.0%
CACCACATTGGCAAAATGAT+AGG + chr7_4:55418549-55418568 None:intergenic 40.0%
AAAACGTAGTTGCACCACAT+TGG + chr7_4:55418561-55418580 None:intergenic 40.0%
TTGTGTTAGGGGTTCATAGT+TGG - chr7_4:55419080-55419099 Msa1163950:intron 40.0%
GTGTCAAAAGAAGACGACTA+CGG + chr7_4:55419180-55419199 None:intergenic 40.0%
GATGACATCAAAGTTAGGGA+TGG + chr7_4:55419529-55419548 None:intergenic 40.0%
!! GGGATGGTTTGGTAATTTGT+TGG + chr7_4:55419556-55419575 None:intergenic 40.0%
AATTACCAAACCATCCCTAG+TGG - chr7_4:55419559-55419578 Msa1163950:CDS 40.0%
! TTTGTTATAGCCACTAGGGA+TGG + chr7_4:55419572-55419591 None:intergenic 40.0%
!! ATGATGAAGTGTTGTCATGG+GGG + chr7_4:55419609-55419628 None:intergenic 40.0%
!! TCCAAAGGTGATGATGGATA+TGG - chr7_4:55419725-55419744 Msa1163950:five_prime_UTR 40.0%
TCCATATCCATCATCACCTT+TGG + chr7_4:55419729-55419748 None:intergenic 40.0%
AAATAGCCTAGAAGATGGTG+TGG - chr7_4:55419775-55419794 Msa1163950:five_prime_UTR 40.0%
CTCTCAAACCCATGACTCAA+AGG + chr7_4:55415899-55415918 None:intergenic 45.0%
GTCATGGGTTTGAGAGACAT+AGG - chr7_4:55415903-55415922 Msa1163950:three_prime_UTR 45.0%
CACACCAATTCCTCATCACT+TGG + chr7_4:55415960-55415979 None:intergenic 45.0%
GCCATGGTTCACATATGTGA+AGG + chr7_4:55416046-55416065 None:intergenic 45.0%
TATATACCTGGAAGCTGCCA+TGG + chr7_4:55416062-55416081 None:intergenic 45.0%
GAAAGGGATGGAAAGGTAAG+AGG - chr7_4:55416530-55416549 Msa1163950:intron 45.0%
GGATGGAAAGGTAAGAGGAA+GGG - chr7_4:55416535-55416554 Msa1163950:intron 45.0%
! GTCATGAGCTTTGTAGCATG+AGG + chr7_4:55417031-55417050 None:intergenic 45.0%
GGAATCCTTGCTGCAATGAT+TGG + chr7_4:55417112-55417131 None:intergenic 45.0%
AGCAACTGGGAAAGATCGTA+TGG - chr7_4:55418366-55418385 Msa1163950:intron 45.0%
CCTACAACCTCTTGTGTGAT+TGG + chr7_4:55418400-55418419 None:intergenic 45.0%
CCAATCACACAAGAGGTTGT+AGG - chr7_4:55418397-55418416 Msa1163950:intron 45.0%
! GCCCTATCATTTTGCCAATG+TGG - chr7_4:55418544-55418563 Msa1163950:intron 45.0%
! TGTTCTTTGTTGCTTGACCG+TGG - chr7_4:55419147-55419166 Msa1163950:intron 45.0%
ACGACTACGGTTTACAACCA+CGG + chr7_4:55419167-55419186 None:intergenic 45.0%
! GTCGTCTTCTTTTGACACGT+CGG - chr7_4:55419182-55419201 Msa1163950:intron 45.0%
TTTGTTGATCACAGGAGGAC+TGG - chr7_4:55419404-55419423 Msa1163950:intron 45.0%
TTGTTGATCACAGGAGGACT+GGG - chr7_4:55419405-55419424 Msa1163950:intron 45.0%
GACATCAAAGTTAGGGATGG+AGG + chr7_4:55419526-55419545 None:intergenic 45.0%
TATAGCCACTAGGGATGGTT+TGG + chr7_4:55419567-55419586 None:intergenic 45.0%
!! ATTAATAAAATTAAAAAGAA+AGG + chr7_4:55415870-55415889 None:intergenic 5.0%
!! TAAGAAATTAATATAATAAA+GGG + chr7_4:55417260-55417279 None:intergenic 5.0%
!! ATAAGAAATTAATATAATAA+AGG + chr7_4:55417261-55417280 None:intergenic 5.0%
ATAGGAGCTTCACTACCTCC+TGG - chr7_4:55415921-55415940 Msa1163950:three_prime_UTR 50.0%
GGGATGGAAAGGTAAGAGGA+AGG - chr7_4:55416534-55416553 Msa1163950:intron 50.0%
TCATGCATTGCATGCAGAGG+TGG - chr7_4:55418243-55418262 Msa1163950:intron 50.0%
CAGTTGCATATTTGCGGTCC+CGG + chr7_4:55418306-55418325 None:intergenic 50.0%
CCAATGCTCAGACAAGCAAG+CGG + chr7_4:55419115-55419134 None:intergenic 50.0%
!!! TGGCGTGTATTTTTGGCGTG+AGG - chr7_4:55419318-55419337 Msa1163950:intron 50.0%
CTGAAGCCACACCATCTTCT+AGG + chr7_4:55419784-55419803 None:intergenic 50.0%
AGATGGTGTGGCTTCAGACT+TGG - chr7_4:55419787-55419806 Msa1163950:five_prime_UTR 50.0%
TGTGAACCATGGCAGCTTCC+AGG - chr7_4:55416053-55416072 Msa1163950:CDS 55.0%
CGGGACCGCAAATATGCAAC+TGG - chr7_4:55418304-55418323 Msa1163950:intron 55.0%
GACACCACACATGCCTCCTA+AGG - chr7_4:55418504-55418523 Msa1163950:intron 55.0%
! CTCACCTTAGGAGGCATGTG+TGG + chr7_4:55418511-55418530 None:intergenic 55.0%
CCGCTTGCTTGTCTGAGCAT+TGG - chr7_4:55419112-55419131 Msa1163950:intron 55.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 55415735 55419810 55415735 ID=Msa1163950;Name=Msa1163950
chr7_4 mRNA 55415735 55419810 55415735 ID=Msa1163950-mRNA-1;Parent=Msa1163950;Name=Msa1163950-mRNA-1;_AED=0.06;_eAED=0.06;_QI=171|0.5|0.66|1|0.5|0.66|3|275|167
chr7_4 exon 55415735 55416127 55415735 ID=Msa1163950-mRNA-1:exon:16206;Parent=Msa1163950-mRNA-1
chr7_4 exon 55417069 55417285 55417069 ID=Msa1163950-mRNA-1:exon:16205;Parent=Msa1163950-mRNA-1
chr7_4 exon 55419471 55419810 55419471 ID=Msa1163950-mRNA-1:exon:16204;Parent=Msa1163950-mRNA-1
chr7_4 five_prime_UTR 55419640 55419810 55419640 ID=Msa1163950-mRNA-1:five_prime_utr;Parent=Msa1163950-mRNA-1
chr7_4 CDS 55419471 55419639 55419471 ID=Msa1163950-mRNA-1:cds;Parent=Msa1163950-mRNA-1
chr7_4 CDS 55417069 55417285 55417069 ID=Msa1163950-mRNA-1:cds;Parent=Msa1163950-mRNA-1
chr7_4 CDS 55416010 55416127 55416010 ID=Msa1163950-mRNA-1:cds;Parent=Msa1163950-mRNA-1
chr7_4 three_prime_UTR 55415735 55416009 55415735 ID=Msa1163950-mRNA-1:three_prime_utr;Parent=Msa1163950-mRNA-1
Gene Sequence

>Msa1163950

ATGGGTTTGAGAGACATAGGAGCTTCACTACCTCCTGGATTTCGATTTTATCCAAGTGATGAGGAATTGGTGTGTCACTATCTTTACAAAAAGATCACAAATGAGGAAGTTCTTAAGGGTACTTTGATTGAAATTGACCTTCACATATGTGAACCATGGCAGCTTCCAGAGGTGGCAAAGCTTAATGCAAATGAATGGTATTTCTTTAGCTTCCGGGACCGCAAATATGCAACTGGATTTAGAACAAACAGAGCAACTATATCTGGATATTGGAAAGCAACTGGGAAAGATCGTATGGTGTTAGATCCAATCACACAAGAGGTTGTAGGGATGAGAAAGACATTGGTGTTCTATAGGAATAGAGCTCCAAATGGTATCAAAACAGGGAGGACTGGGTATTGTGTAGAGTCTTTCACAAAAGCAAAGAAGAGAACAACAACAACAATAATAGTTCCAAACTCAACACACAACAATTCATGTATGAGACAACACCTCCATCCCTAA
Protein sequence

>Msa1163950

MGLRDIGASLPPGFRFYPSDEELVCHYLYKKITNEEVLKGTLIEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATISGYWKATGKDRMVLDPITQEVVGMRKTLVFYRNRAPNGIKTGRTGYCVESFTKAKKRTTTTIIVPNSTHNNSCMRQHLHP*