AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1038620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1038620 MtrunA17_Chr7g0273721 87.838 444 41 5 1 441 1 434 0.0 794
Msa1038620 MtrunA17_Chr5g0433641 80.499 441 74 4 3 441 2 432 0.0 736
Msa1038620 MtrunA17_Chr7g0273781 71.332 443 113 5 1 441 34 464 0.0 655
Msa1038620 MtrunA17_Chr7g0273791 71.882 441 111 5 3 441 2 431 0.0 653
Msa1038620 MtrunA17_Chr7g0273731 69.977 443 120 5 1 441 83 514 0.0 644
Msa1038620 MtrunA17_Chr7g0273761 69.820 444 121 5 1 441 372 805 0.0 633
Msa1038620 MtrunA17_Chr7g0273761 63.051 295 98 3 149 441 32 317 4.82e-122 374
Msa1038620 MtrunA17_Chr1g0165671 55.606 437 178 5 8 441 23 446 4.43e-172 491
Msa1038620 MtrunA17_Chr1g0165661 51.487 437 198 7 8 441 5 430 2.30e-154 445
Msa1038620 MtrunA17_Chr1g0165681 50.913 438 199 7 8 441 5 430 2.85e-152 440
Msa1038620 MtrunA17_Chr1g0191081 52.691 446 186 9 3 440 9 437 3.48e-150 434
Msa1038620 MtrunA17_Chr1g0165711 50.000 434 165 6 8 441 5 386 2.47e-140 408
Msa1038620 MtrunA17_Chr7g0273741 80.000 150 28 1 1 150 1 148 1.01e-80 246
Msa1038620 MtrunA17_Chr7g0273701 69.697 165 19 3 289 441 1 146 4.75e-72 224
Msa1038620 MtrunA17_Chr3g0098961 72.109 147 41 0 4 150 5 151 1.94e-71 223
Msa1038620 MtrunA17_Chr3g0132001 32.911 395 249 9 12 404 14 394 1.15e-65 216
Msa1038620 MtrunA17_Chr6g0471371 60.000 160 55 1 8 167 5 155 3.78e-65 206
Msa1038620 MtrunA17_Chr8g0386141 33.837 331 203 8 10 335 5 324 7.00e-65 215
Msa1038620 MtrunA17_Chr7g0224391 31.990 397 245 11 15 404 19 397 1.47e-62 208
Msa1038620 MtrunA17_Chr1g0165741 62.937 143 53 0 8 150 5 147 4.88e-62 197
Msa1038620 MtrunA17_Chr8g0353421 63.710 124 45 0 8 131 5 128 2.00e-57 185
Msa1038620 MtrunA17_Chr6g0471381 44.398 241 122 6 200 438 6 236 1.27e-56 188
Msa1038620 MtrunA17_Chr6g0471971 43.426 251 110 7 164 412 1 221 1.82e-56 186
Msa1038620 MtrunA17_Chr7g0273691 86.316 95 13 0 168 262 1 95 1.49e-55 179
Msa1038620 MtrunA17_Chr2g0334001 28.442 443 288 16 8 441 1 423 1.77e-46 166
Msa1038620 MtrunA17_Chr2g0306321 29.073 399 260 11 20 404 26 415 9.58e-46 164
Msa1038620 MtrunA17_Chr3g0141851 28.395 405 245 11 22 408 22 399 1.36e-45 164
Msa1038620 MtrunA17_Chr4g0027071 28.162 419 274 11 19 422 19 425 1.48e-43 159
Msa1038620 MtrunA17_Chr7g0270771 30.667 300 165 8 8 294 1 270 1.53e-41 148
Msa1038620 MtrunA17_Chr4g0001861 27.778 414 260 15 44 441 34 424 5.89e-40 148
Msa1038620 MtrunA17_Chr8g0371821 24.885 434 298 13 8 433 1 414 4.98e-36 137
Msa1038620 MtrunA17_Chr3g0113821 27.778 414 258 12 11 404 4 396 8.06e-36 137
Msa1038620 MtrunA17_Chr4g0072041 27.149 442 277 14 20 435 22 444 8.11e-32 126
Msa1038620 MtrunA17_Chr2g0283361 29.480 346 222 11 62 399 53 384 2.27e-31 125
Msa1038620 MtrunA17_Chr7g0253531 26.253 419 264 16 18 402 8 415 2.93e-31 124
Msa1038620 MtrunA17_Chr7g0252731 26.786 448 275 17 4 437 8 416 3.38e-31 124
Msa1038620 MtrunA17_Chr7g0253501 25.416 421 263 16 19 402 9 415 1.02e-28 117
Msa1038620 MtrunA17_Chr4g0054081 25.059 427 271 13 38 435 34 440 1.83e-28 116
Msa1038620 MtrunA17_Chr3g0106691 25.369 406 276 13 10 399 54 448 3.51e-28 116
Msa1038620 MtrunA17_Chr3g0087401 23.864 440 267 13 20 423 10 417 4.80e-28 115
Msa1038620 MtrunA17_Chr6g0470591 26.705 352 225 12 66 399 70 406 4.53e-27 112
Msa1038620 MtrunA17_Chr7g0253541 23.362 458 285 18 20 437 12 443 5.14e-27 112
Msa1038620 MtrunA17_Chr2g0311401 27.723 303 196 11 148 441 5 293 8.28e-27 109
Msa1038620 MtrunA17_Chr7g0273681 86.538 52 7 0 94 145 1 52 1.59e-26 101
Msa1038620 MtrunA17_Chr1g0165731 44.643 112 55 4 164 272 1 108 5.61e-26 101
Msa1038620 MtrunA17_Chr6g0471891 36.364 198 91 5 235 430 1 165 2.76e-25 103
Msa1038620 MtrunA17_Chr4g0004691 33.140 172 101 5 20 187 12 173 3.01e-25 102
Msa1038620 MtrunA17_Chr3g0106711 32.984 191 116 5 19 200 17 204 3.14e-25 103
Msa1038620 MtrunA17_Chr5g0442691 24.883 426 267 15 10 401 31 437 1.41e-24 105
Msa1038620 MtrunA17_Chr3g0106661 28.070 342 201 12 19 334 17 339 2.39e-24 105
Msa1038620 MtrunA17_Chr3g0106721 28.873 284 182 8 62 334 63 337 2.86e-24 104
Msa1038620 MtrunA17_Chr5g0442701 24.883 426 267 15 10 401 8 414 1.15e-23 103
Msa1038620 MtrunA17_Chr7g0235531 26.126 333 209 11 19 329 11 328 5.47e-22 97.8
Msa1038620 MtrunA17_Chr3g0106761 24.471 331 225 9 82 399 29 347 2.24e-20 92.8
Msa1038620 MtrunA17_Chr3g0106741 24.695 328 228 7 82 399 60 378 1.89e-19 90.1
Msa1038620 MtrunA17_Chr3g0134091 25.169 445 265 18 26 440 30 436 2.29e-19 90.1
Msa1038620 MtrunA17_Chr1g0165721 50.617 81 39 1 362 441 6 86 3.11e-19 83.2
Msa1038620 MtrunA17_Chr5g0442721 25.479 365 235 13 64 402 64 417 3.61e-19 89.7
Msa1038620 MtrunA17_Chr3g0123061 23.583 441 269 20 18 440 11 401 4.16e-19 89.0
Msa1038620 MtrunA17_Chr5g0438701 22.506 431 281 20 18 430 9 404 1.29e-18 87.8
Msa1038620 MtrunA17_Chr8g0354371 23.210 405 269 13 26 413 31 410 2.26e-18 87.0
Msa1038620 MtrunA17_Chr4g0053111 25.587 426 243 19 26 413 28 417 6.52e-18 85.5
Msa1038620 MtrunA17_Chr3g0134041 25.313 399 245 17 67 441 66 435 8.19e-18 85.5
Msa1038620 MtrunA17_Chr5g0408911 22.799 443 275 16 25 438 33 437 2.18e-17 84.0
Msa1038620 MtrunA17_Chr7g0273671 86.667 45 4 1 1 45 1 43 2.54e-17 75.5
Msa1038620 MtrunA17_Chr3g0125001 24.201 438 258 20 26 436 25 415 7.29e-17 82.4
Msa1038620 MtrunA17_Chr6g0471981 60.784 51 20 0 103 153 1 51 2.14e-16 73.6
Msa1038620 MtrunA17_Chr7g0224131 24.169 451 257 21 26 441 25 425 1.54e-15 78.2
Msa1038620 MtrunA17_Chr1g0199561 30.108 186 109 6 18 193 9 183 5.16e-15 76.6
Msa1038620 MtrunA17_Chr3g0095731 22.423 388 247 13 48 401 46 413 1.21e-14 75.9
Msa1038620 MtrunA17_Chr8g0374641 23.129 441 266 19 26 436 30 427 1.30e-14 75.5
Msa1038620 MtrunA17_Chr3g0095721 22.493 369 235 12 64 401 69 417 3.95e-14 74.3
Msa1038620 MtrunA17_Chr1g0169471 37.374 99 54 2 92 189 13 104 4.93e-14 68.6
Msa1038620 MtrunA17_Chr8g0376911 23.820 445 263 21 18 430 9 409 5.58e-14 73.6
Msa1038620 MtrunA17_Chr4g0053081 22.588 425 252 19 26 414 33 416 1.09e-13 72.8
Msa1038620 MtrunA17_Chr4g0053061 22.794 408 258 15 27 409 59 434 1.76e-13 72.0
Msa1038620 MtrunA17_Chr8g0374911 23.235 439 271 19 27 436 52 453 2.43e-13 71.6
Msa1038620 MtrunA17_Chr5g0414431 53.571 56 21 1 54 109 2 52 4.48e-13 63.5
Msa1038620 MtrunA17_Chr6g0456591 29.487 156 99 6 62 209 64 216 4.54e-13 68.6
Msa1038620 MtrunA17_Chr8g0361771 27.885 208 126 8 18 215 9 202 1.18e-11 66.2
Msa1038620 MtrunA17_Chr3g0106631 26.761 142 96 4 150 286 2 140 2.10e-11 62.4
Msa1038620 MtrunA17_Chr2g0311411 30.405 148 97 4 8 155 1 142 2.83e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1038620 AT5G17540.1 45.455 440 220 9 8 441 5 430 4.88e-124 368
Msa1038620 AT3G03480.1 45.147 443 226 9 3 441 10 439 1.84e-120 359
Msa1038620 AT3G48720.1 32.161 398 253 10 10 404 7 390 1.37e-66 219
Msa1038620 AT5G63560.1 34.250 400 234 11 12 404 9 386 7.18e-65 214
Msa1038620 AT5G41040.1 33.582 402 240 11 12 404 33 416 4.80e-63 211
Msa1038620 AT5G41040.2 33.582 402 240 11 12 404 17 400 4.98e-63 210
Msa1038620 AT1G27620.1 27.930 401 263 9 15 408 12 393 5.23e-45 162
Msa1038620 AT1G03390.1 28.182 440 287 14 10 437 23 445 1.07e-43 159
Msa1038620 AT5G48930.1 28.046 435 281 14 19 441 10 424 9.45e-42 153
Msa1038620 AT3G62160.1 27.208 419 246 11 8 406 1 380 4.80e-40 149
Msa1038620 AT2G19070.1 27.740 447 285 12 11 435 5 435 9.27e-39 145
Msa1038620 AT5G07080.1 27.778 414 268 13 1 399 6 403 7.87e-36 137
Msa1038620 AT3G47170.1 27.594 424 261 15 10 405 10 415 8.54e-36 138
Msa1038620 AT5G57840.1 28.125 448 270 19 12 435 3 422 6.66e-35 135
Msa1038620 AT2G25150.1 27.669 459 282 17 6 439 7 440 2.57e-33 130
Msa1038620 AT2G40230.1 26.716 408 264 13 12 404 5 392 4.35e-33 129
Msa1038620 AT1G65450.1 27.603 413 267 14 4 401 8 403 1.97e-32 128
Msa1038620 AT1G28680.1 28.307 378 243 14 33 399 27 387 2.09e-31 125
Msa1038620 AT1G28680.2 29.808 312 196 11 33 334 27 325 5.36e-29 117
Msa1038620 AT2G23510.1 26.077 418 262 14 3 399 7 398 1.14e-28 117
Msa1038620 AT3G26040.1 23.798 416 245 15 18 402 9 383 3.49e-24 104
Msa1038620 AT1G31490.1 22.947 414 268 14 9 401 3 386 1.02e-21 97.4
Msa1038620 AT4G15390.1 24.215 446 281 20 18 440 14 425 1.12e-19 91.3
Msa1038620 AT4G15390.2 24.215 446 281 20 18 440 14 425 1.12e-19 91.3
Msa1038620 AT4G31910.1 25.169 445 270 20 33 441 32 449 1.12e-19 91.7
Msa1038620 AT5G42830.1 29.305 331 194 15 22 335 27 334 3.81e-19 89.7
Msa1038620 AT5G07860.1 24.938 405 240 18 64 441 69 436 6.28e-19 89.4
Msa1038620 AT5G23970.1 26.398 447 257 20 18 440 9 407 2.52e-18 87.0
Msa1038620 AT3G30280.1 22.777 461 268 20 18 440 12 422 3.29e-18 87.0
Msa1038620 AT5G47950.1 24.045 445 265 19 18 440 12 405 6.06e-18 85.9
Msa1038620 AT1G24420.2 24.146 439 266 17 18 430 11 408 7.84e-18 85.9
Msa1038620 AT1G24420.1 24.146 439 266 17 18 430 11 408 7.84e-18 85.9
Msa1038620 AT1G24430.1 26.518 313 195 13 18 323 11 295 1.28e-17 85.1
Msa1038620 AT5G38130.1 25.721 416 250 19 26 418 48 427 5.92e-17 83.2
Msa1038620 AT5G07850.1 24.009 454 270 21 22 441 28 440 1.43e-16 82.0
Msa1038620 AT3G50280.1 24.105 419 253 18 26 417 28 408 2.56e-16 81.3
Msa1038620 AT1G78990.1 22.812 377 250 12 45 402 45 399 1.10e-14 76.3
Msa1038620 AT2G39980.1 34.058 138 89 2 67 203 62 198 1.87e-14 75.5
Msa1038620 AT1G32910.1 21.827 394 256 13 65 439 63 423 4.43e-14 74.3
Msa1038620 AT5G16410.1 32.168 143 85 5 67 207 91 223 3.31e-12 68.6

Find 136 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACACTTCTTAACTCTATT+TGG 0.145351 7_1:-75543721 Msa1038620:five_prime_UTR
ATCTTATCACTGCATGTTAT+TGG 0.178748 7_1:-75541894 Msa1038620:CDS
TCTTCCTTGATGTACGTATT+TGG 0.224399 7_1:+75542021 None:intergenic
GATATAACACTTGATCAATT+TGG 0.295091 7_1:-75543342 Msa1038620:CDS
TTGTTGCTTGTCGGATATTA+TGG 0.296854 7_1:-75541769 Msa1038620:CDS
GCATGTTTAAGAACCTTAAC+AGG 0.298889 7_1:+75543483 None:intergenic
ACAAACCTCTTCATATCTTC+AGG 0.311975 7_1:+75540770 None:intergenic
GGGTCTTTCTCTTTCATTGA+TGG 0.316385 7_1:+75543504 None:intergenic
CCATTCAACCTGTATGGAAT+AGG 0.323735 7_1:-75542113 Msa1038620:CDS
CACCCGTGCAACGTAGCTAA+TGG 0.325986 7_1:+75541691 None:intergenic
GAACATCGTATAGAATTTCT+TGG 0.334851 7_1:+75543289 None:intergenic
CTGCCGCACAAAAGCATTGC+AGG 0.340219 7_1:-75541869 Msa1038620:CDS
TGGTAATTGTATTGCTTTCT+CGG 0.356387 7_1:-75541749 Msa1038620:CDS
TACGGGTACGGGTGCGGGTA+CGG 0.356867 7_1:-75541652 Msa1038620:CDS
ATCCAGCTGCAGGAAGGATT+AGG 0.360120 7_1:-75543434 Msa1038620:CDS
CGTGACTGCATGGGCAGAAA+TGG 0.385863 7_1:-75542157 Msa1038620:CDS
TACGGTACCCGGTACGGGTA+CGG 0.387775 7_1:-75541664 Msa1038620:CDS
AAGTTCTCAGAAGTAAATTT+CGG 0.389814 7_1:-75540920 Msa1038620:CDS
TCCAGCTGCAGGAAGGATTA+GGG 0.391602 7_1:-75543433 Msa1038620:CDS
ACCCGGTACGGGTACGGGTG+CGG 0.394249 7_1:-75541658 Msa1038620:CDS
TCCCTAATCCTTCCTGCAGC+TGG 0.402307 7_1:+75543432 None:intergenic
CATTCAACCTGTATGGAATA+GGG 0.408225 7_1:-75542112 Msa1038620:CDS
GCTAACCCTTTGTTGCTTGT+CGG 0.409807 7_1:-75541778 Msa1038620:CDS
GTGTATGGTGGAGCAGTAAA+AGG 0.414611 7_1:-75540884 Msa1038620:CDS
GGAGCAGTAAAAGGTGGAAT+TGG 0.418235 7_1:-75540875 Msa1038620:CDS
ATGCACGTTCTGCACGTTCG+AGG 0.419294 7_1:-75541807 Msa1038620:CDS
GGGTGCTGGGCGAAAGTTGA+TGG 0.420210 7_1:-75543409 Msa1038620:CDS
ACGGGTACGGGTGCGGGTAC+GGG 0.421936 7_1:-75541651 Msa1038620:CDS
AACCTTCCATTCAACCTGTA+TGG 0.427456 7_1:-75542119 Msa1038620:CDS
TCATGAGGAGTGGGTGCAGC+TGG 0.430177 7_1:+75543606 None:intergenic
CAGCTCCATCGCCCATTGTA+TGG 0.433098 7_1:+75542193 None:intergenic
GGAAGGATTAGGGAGGGTGC+TGG 0.433324 7_1:-75543423 Msa1038620:CDS
CCCGGTACGGGTACGGGTGC+GGG 0.439124 7_1:-75541657 Msa1038620:CDS
GAAAGATGTTTATTTACAAA+GGG 0.441292 7_1:-75540977 Msa1038620:CDS
GAAATTCTATACGATGTTCC+AGG 0.443086 7_1:-75543285 Msa1038620:CDS
ACGGGTGCGGGTACGGGATA+CGG 0.446107 7_1:-75541645 Msa1038620:CDS
CTGTGAAGAAGAAAGATTGA+TGG 0.446115 7_1:+75541980 None:intergenic
GGAAAGATGTTTATTTACAA+AGG 0.447433 7_1:-75540978 Msa1038620:CDS
ACGGTACCCGGTACGGGTAC+GGG 0.449116 7_1:-75541663 Msa1038620:CDS
TGCGGGTACGGTACCCGGTA+CGG 0.449184 7_1:-75541670 Msa1038620:CDS
CCTATTCCATACAGGTTGAA+TGG 0.453015 7_1:+75542113 None:intergenic
ACCCGTGCAACGTAGCTAAT+GGG 0.455118 7_1:+75541692 None:intergenic
ATCATTCGTACCTCTTCATC+TGG 0.459290 7_1:+75541841 None:intergenic
AAGAATGCAAAAGGAGAAGA+AGG 0.460427 7_1:-75540818 Msa1038620:CDS
ACCCGCACCCGTACCCGTAC+CGG 0.463004 7_1:+75541656 None:intergenic
TTAGCTACGTTGCACGGGTG+CGG 0.469153 7_1:-75541688 Msa1038620:CDS
GCGGGTACGGTACCCGGTAC+GGG 0.473139 7_1:-75541669 Msa1038620:CDS
CATAGCCGCGATTCGTCGCC+TGG 0.474719 7_1:-75541950 Msa1038620:CDS
GTTTATTTCTATCCAGCTGC+AGG 0.476691 7_1:-75543444 Msa1038620:CDS
TACAAAGGGAAGAACTTGTA+TGG 0.478317 7_1:-75540963 Msa1038620:CDS
AGAATCTCCCTATTCCATAC+AGG 0.480630 7_1:+75542105 None:intergenic
AACCCATTAGCTACGTTGCA+CGG 0.482683 7_1:-75541694 Msa1038620:CDS
ATGGTGGATTGCACTGGGGA+GGG 0.483447 7_1:-75543390 Msa1038620:CDS
CAAACCTCTTCATATCTTCA+GGG 0.484202 7_1:+75540771 None:intergenic
TCAATAATATATTCTGATCC+TGG 0.488870 7_1:+75543267 None:intergenic
TCCTTGATGTACGTATTTGG+CGG 0.490692 7_1:+75542024 None:intergenic
AAGACCTGTATGAGTCGAAC+GGG 0.490760 7_1:+75543240 None:intergenic
CAAGTGTGGTGGTTTCATAA+TGG 0.491746 7_1:-75542229 Msa1038620:CDS
GAACTTGTATGGTGTCAGAT+TGG 0.493406 7_1:-75540952 Msa1038620:CDS
TGGAAGTACCAACTCTGGTT+GGG 0.497528 7_1:+75543626 None:intergenic
GGATGGGGTGAAGCTGTGTA+TGG 0.499977 7_1:-75540899 Msa1038620:CDS
ATGGAATAGGGAGATTCTAA+TGG 0.500842 7_1:-75542100 Msa1038620:CDS
GAGAAAGGTGAAGTGGAACC+AGG 0.501342 7_1:+75541932 None:intergenic
GTCCCGCATAAGAATGCAAA+AGG 0.502043 7_1:-75540827 Msa1038620:CDS
ACGTTGCACGGGTGCGGGTA+CGG 0.508815 7_1:-75541682 Msa1038620:CDS
CATACAATGGGCGATGGAGC+TGG 0.513365 7_1:-75542192 Msa1038620:CDS
ATTTCTTGGAAGCAAGGGAA+TGG 0.515708 7_1:+75543303 None:intergenic
GATGGTGGATTGCACTGGGG+AGG 0.517131 7_1:-75543391 Msa1038620:CDS
CTGGAAGTACCAACTCTGGT+TGG 0.519392 7_1:+75543625 None:intergenic
TATAGAATTTCTTGGAAGCA+AGG 0.520340 7_1:+75543297 None:intergenic
TTCCATACAGGTTGAATGGA+AGG 0.520405 7_1:+75542117 None:intergenic
GAAGGATTAGGGAGGGTGCT+GGG 0.522109 7_1:-75543422 Msa1038620:CDS
CGTATGCAGTGCATTGAGAA+AGG 0.526515 7_1:+75541917 None:intergenic
ATTCTTATGCGGGACAAGAA+AGG 0.526948 7_1:+75540835 None:intergenic
AGTTTAACTTCATGAGGAGT+GGG 0.527780 7_1:+75543597 None:intergenic
AAGTTGATGGTGGATTGCAC+TGG 0.528428 7_1:-75543396 Msa1038620:CDS
GAAAGAGAAAGACCCTGTTA+AGG 0.531454 7_1:-75543496 Msa1038620:CDS
GGTTGCAAGTAACGTGTGGC+GGG 0.531576 7_1:+75542070 None:intergenic
CCGTCCCGTTCGACTCATAC+AGG 0.533062 7_1:-75543244 Msa1038620:intron
CTCAGAAGTAAATTTCGGAT+GGG 0.534991 7_1:-75540915 Msa1038620:CDS
TCTCAGAAGTAAATTTCGGA+TGG 0.535849 7_1:-75540916 Msa1038620:CDS
TGAGACAATTCGTGACTGCA+TGG 0.535891 7_1:-75542167 Msa1038620:CDS
ACCCATTAGCTACGTTGCAC+GGG 0.537442 7_1:-75541693 Msa1038620:CDS
TTGAGCTTGAACCATACAAT+GGG 0.537449 7_1:-75542204 Msa1038620:CDS
ACGGGTGCGGGTACGGTACC+CGG 0.542383 7_1:-75541675 Msa1038620:CDS
ACCACTGCAAAGGAGCTTTG+TGG 0.545376 7_1:-75541718 Msa1038620:CDS
TAGCTACGTTGCACGGGTGC+GGG 0.546737 7_1:-75541687 Msa1038620:CDS
CCGCACAAAAGCATTGCAGG+TGG 0.552363 7_1:-75541866 Msa1038620:CDS
GAGACAATTCGTGACTGCAT+GGG 0.553285 7_1:-75542166 Msa1038620:CDS
CCCGCACCCGTACCCGTACC+GGG 0.561655 7_1:+75541657 None:intergenic
AATATCCGACAAGCAACAAA+GGG 0.562922 7_1:+75541773 None:intergenic
GAGTTTAACTTCATGAGGAG+TGG 0.565045 7_1:+75543596 None:intergenic
TGGAACCAGGCGACGAATCG+CGG 0.566895 7_1:+75541945 None:intergenic
TCCACAAAGCTCCTTTGCAG+TGG 0.567433 7_1:+75541717 None:intergenic
CATTGTATGGTTCAAGCTCA+AGG 0.569460 7_1:+75542206 None:intergenic
ATAGAATTTCTTGGAAGCAA+GGG 0.573708 7_1:+75543298 None:intergenic
GGCAGCAGTCACCACTGCAA+AGG 0.576150 7_1:-75541728 Msa1038620:CDS
TCAGAAGTAAATTTCGGATG+GGG 0.577426 7_1:-75540914 Msa1038620:CDS
GCAGCTGGAAGTACCAACTC+TGG 0.584510 7_1:+75543621 None:intergenic
CTTGAGCTTGAACCATACAA+TGG 0.589328 7_1:-75542205 Msa1038620:CDS
TAATATCCGACAAGCAACAA+AGG 0.591430 7_1:+75541772 None:intergenic
GCAGGTGGAGCCAGATGAAG+AGG 0.592868 7_1:-75541851 Msa1038620:CDS
TCTTGGAAGCAAGGGAATGG+AGG 0.599063 7_1:+75543306 None:intergenic
AGTTGATGGTGGATTGCACT+GGG 0.599197 7_1:-75543395 Msa1038620:CDS
GAGAGGAGTTTAACTTCATG+AGG 0.599961 7_1:+75543591 None:intergenic
TGGGGTGAAGCTGTGTATGG+TGG 0.601746 7_1:-75540896 Msa1038620:CDS
TGACGAAAGACAAATATGAC+AGG 0.607837 7_1:+75543531 None:intergenic
CGCACTGTGAACAATAGTAG+TGG 0.609210 7_1:+75543654 None:intergenic
ATTTCTATCCAGCTGCAGGA+AGG 0.615347 7_1:-75543440 Msa1038620:CDS
GCGGAGGTCCCAACCAGAGT+TGG 0.615833 7_1:-75543634 Msa1038620:CDS
TGACAGGAAGATTGAAACGA+AGG 0.615959 7_1:+75543547 None:intergenic
TAAGACCTGTATGAGTCGAA+CGG 0.619194 7_1:+75543239 None:intergenic
GTGCATTGAGAAAGGTGAAG+TGG 0.620215 7_1:+75541925 None:intergenic
TCCGCCAAATACGTACATCA+AGG 0.620796 7_1:-75542025 Msa1038620:CDS
GCCTTCTTGATCATCTATGT+CGG 0.622425 7_1:+75543569 None:intergenic
TGGTTGCAAGTAACGTGTGG+CGG 0.626899 7_1:+75542069 None:intergenic
TTGAACCATACAATGGGCGA+TGG 0.631288 7_1:-75542198 Msa1038620:CDS
TGCTGGGCGAAAGTTGATGG+TGG 0.635555 7_1:-75543406 Msa1038620:CDS
CCTGTATGAGTCGAACGGGA+CGG 0.638129 7_1:+75543244 None:intergenic
TCCGACATAGATGATCAAGA+AGG 0.646509 7_1:-75543570 Msa1038620:CDS
AAACCTCTTCATATCTTCAG+GGG 0.652653 7_1:+75540772 None:intergenic
TATGGTGGAGCAGTAAAAGG+TGG 0.653295 7_1:-75540881 Msa1038620:CDS
CATGTTTAAGAACCTTAACA+GGG 0.656931 7_1:+75543484 None:intergenic
GTATTTCTTCGTATTCACGA+TGG 0.658841 7_1:+75542049 None:intergenic
AGCTGCAGGAAGGATTAGGG+AGG 0.663235 7_1:-75543430 Msa1038620:CDS
AGAATGCAAAAGGAGAAGAA+GGG 0.663405 7_1:-75540817 Msa1038620:CDS
GTTACACGTCTCAAGTGTGG+TGG 0.666120 7_1:-75542240 Msa1038620:CDS
AACCTCTTCATATCTTCAGG+GGG 0.666136 7_1:+75540773 None:intergenic
CAGGTTACACGTCTCAAGTG+TGG 0.668116 7_1:-75542243 Msa1038620:CDS
CGATGGTTGCAAGTAACGTG+TGG 0.669479 7_1:+75542066 None:intergenic
CTTGATCATCTATGTCGGAG+AGG 0.675142 7_1:+75543574 None:intergenic
TACTATTGTTCACAGTGCGG+AGG 0.675359 7_1:-75543650 Msa1038620:CDS
GCATGGGCAGAAATGGCTCG+AGG 0.681407 7_1:-75542150 Msa1038620:CDS
GCTGCAGGAAGGATTAGGGA+GGG 0.683826 7_1:-75543429 Msa1038620:CDS
CACTACTATTGTTCACAGTG+CGG 0.714566 7_1:-75543653 Msa1038620:CDS
GTTGATGGTGGATTGCACTG+GGG 0.762765 7_1:-75543394 Msa1038620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTAATTAATATAAATTCAT+AGG + chr7_1:75541753-75541772 None:intergenic 10.0%
!!! TTTTTTTGTTTTTTTAATGT+TGG + chr7_1:75543312-75543331 None:intergenic 10.0%
!!! TATATAATTTATTTGTTGTG+TGG + chr7_1:75541520-75541539 None:intergenic 15.0%
!! AAATAATTGCATTATATAAG+TGG + chr7_1:75541696-75541715 None:intergenic 15.0%
!!! TCATTTTTTCAAGAAAAAAA+GGG - chr7_1:75543244-75543263 Msa1038620:intron 15.0%
!!! TTTATTCCAAGTCTAAAATT+CGG + chr7_1:75541451-75541470 None:intergenic 20.0%
!! TTTATCCCAAAAAAAAATGA+GGG + chr7_1:75541910-75541929 None:intergenic 20.0%
!!! TTTTATCCCAAAAAAAAATG+AGG + chr7_1:75541911-75541930 None:intergenic 20.0%
!!! TACCATTTTTCGTAAAAAAT+TGG + chr7_1:75541935-75541954 None:intergenic 20.0%
!! ACTTAAAAATAGTGTAAAGT+TGG + chr7_1:75541963-75541982 None:intergenic 20.0%
!! TAACATATACATACATCTTT+AGG - chr7_1:75542219-75542238 Msa1038620:CDS 20.0%
!! GATAATTAGAATTAAATGAC+AGG - chr7_1:75542252-75542271 Msa1038620:intron 20.0%
!!! ATTTAAAATAACATAGCATG+AGG - chr7_1:75542943-75542962 Msa1038620:intron 20.0%
!!! GATTTTATACAATACGAAAA+AGG - chr7_1:75543029-75543048 Msa1038620:intron 20.0%
!!! CTTTTTTTCTTGAAAAAATG+AGG + chr7_1:75543245-75543264 None:intergenic 20.0%
!!! CTCATTTTTTCAAGAAAAAA+AGG - chr7_1:75543243-75543262 Msa1038620:intron 20.0%
!! GAAAGATGTTTATTTACAAA+GGG - chr7_1:75543537-75543556 Msa1038620:CDS 20.0%
! TCATGCTATCATAAAAAAGA+AGG + chr7_1:75540829-75540848 None:intergenic 25.0%
! GATATAACACTTGATCAATT+TGG - chr7_1:75541172-75541191 Msa1038620:intron 25.0%
! TCAATAATATATTCTGATCC+TGG + chr7_1:75541250-75541269 None:intergenic 25.0%
!! TCACATCCTTGAAATTTTAT+AGG - chr7_1:75541310-75541329 Msa1038620:intron 25.0%
! AAGAGACCTATAAAATTTCA+AGG + chr7_1:75541319-75541338 None:intergenic 25.0%
!! TGATCTCATTACAATCATTT+TGG + chr7_1:75541383-75541402 None:intergenic 25.0%
! AAAATGATTGTAATGAGATC+AGG - chr7_1:75541382-75541401 Msa1038620:intron 25.0%
! AAATGATTGTAATGAGATCA+GGG - chr7_1:75541383-75541402 Msa1038620:intron 25.0%
!! TTATTCCAAGTCTAAAATTC+GGG + chr7_1:75541450-75541469 None:intergenic 25.0%
!! GAATTTTAGACTTGGAATAA+AGG - chr7_1:75541450-75541469 Msa1038620:intron 25.0%
! TTAAAGCGAACTATAATATG+AGG + chr7_1:75541788-75541807 None:intergenic 25.0%
!! ATTATCATGCATTAACTTGA+TGG + chr7_1:75541855-75541874 None:intergenic 25.0%
! TTATCCCAAAAAAAAATGAG+GGG + chr7_1:75541909-75541928 None:intergenic 25.0%
!!! AGCCAATTTTTTACGAAAAA+TGG - chr7_1:75541930-75541949 Msa1038620:CDS 25.0%
!!! TATTAGTCTTTGAAGATATC+GGG + chr7_1:75542003-75542022 None:intergenic 25.0%
!!! CTATTAGTCTTTGAAGATAT+CGG + chr7_1:75542004-75542023 None:intergenic 25.0%
! TTTCACATTAAATATGCCTT+GGG + chr7_1:75542064-75542083 None:intergenic 25.0%
! ATTTCACATTAAATATGCCT+TGG + chr7_1:75542065-75542084 None:intergenic 25.0%
!!! TCAATGACATTAGTCTTTTT+AGG + chr7_1:75542176-75542195 None:intergenic 25.0%
! TTTCTCAAAAAACAAAGGTA+CGG - chr7_1:75542894-75542913 Msa1038620:intron 25.0%
! GGAAAATAAATGGTTTAACA+AGG - chr7_1:75543075-75543094 Msa1038620:intron 25.0%
!! TTTTAATGTTGGTACTGTTA+TGG + chr7_1:75543301-75543320 None:intergenic 25.0%
! AAAATAAAATTGGTACGTCA+TGG - chr7_1:75543328-75543347 Msa1038620:CDS 25.0%
! AAATAAAATTGGTACGTCAT+GGG - chr7_1:75543329-75543348 Msa1038620:CDS 25.0%
! GGAAAGATGTTTATTTACAA+AGG - chr7_1:75543536-75543555 Msa1038620:CDS 25.0%
! AAGTTCTCAGAAGTAAATTT+CGG - chr7_1:75543594-75543613 Msa1038620:CDS 25.0%
CAACACTTCTTAACTCTATT+TGG - chr7_1:75540793-75540812 Msa1038620:CDS 30.0%
GCTATCATAAAAAAGAAGGA+GGG + chr7_1:75540825-75540844 None:intergenic 30.0%
TGCTATCATAAAAAAGAAGG+AGG + chr7_1:75540826-75540845 None:intergenic 30.0%
CATGTTTAAGAACCTTAACA+GGG + chr7_1:75541033-75541052 None:intergenic 30.0%
ATAGAATTTCTTGGAAGCAA+GGG + chr7_1:75541219-75541238 None:intergenic 30.0%
TATAGAATTTCTTGGAAGCA+AGG + chr7_1:75541220-75541239 None:intergenic 30.0%
GAACATCGTATAGAATTTCT+TGG + chr7_1:75541228-75541247 None:intergenic 30.0%
! TATTCCAAGTCTAAAATTCG+GGG + chr7_1:75541449-75541468 None:intergenic 30.0%
!!! ACATAGTTTTGTCTATCATG+AGG + chr7_1:75541476-75541495 None:intergenic 30.0%
TTTAAGCCTTAGAATCTGTT+AGG - chr7_1:75541803-75541822 Msa1038620:CDS 30.0%
!! TCAAAGACTAATAGCTTGTT+TGG - chr7_1:75542010-75542029 Msa1038620:CDS 30.0%
!! TAATAGCTTGTTTGGAATAG+CGG - chr7_1:75542018-75542037 Msa1038620:CDS 30.0%
ATCTTATCACTGCATGTTAT+TGG - chr7_1:75542620-75542639 Msa1038620:intron 30.0%
TGGTAATTGTATTGCTTTCT+CGG - chr7_1:75542765-75542784 Msa1038620:intron 30.0%
! TTCTCAAAAAACAAAGGTAC+GGG - chr7_1:75542895-75542914 Msa1038620:intron 30.0%
AACAAAAGCTTAACAAGGAT+TGG - chr7_1:75543007-75543026 Msa1038620:intron 30.0%
GATAAGAATATACATTGCAC+AGG - chr7_1:75543054-75543073 Msa1038620:intron 30.0%
ACATTGCACAGGAAAATAAA+TGG - chr7_1:75543065-75543084 Msa1038620:intron 30.0%
! TTTTCTACTTCTGCAACTAT+TGG - chr7_1:75543112-75543131 Msa1038620:intron 30.0%
! GGCAGATTTTATGGTTATTA+AGG - chr7_1:75543515-75543534 Msa1038620:CDS 30.0%
! AGTTTAACTTCATGAGGAGT+GGG + chr7_1:75540920-75540939 None:intergenic 35.0%
TGACGAAAGACAAATATGAC+AGG + chr7_1:75540986-75541005 None:intergenic 35.0%
GCATGTTTAAGAACCTTAAC+AGG + chr7_1:75541034-75541053 None:intergenic 35.0%
GAAATTCTATACGATGTTCC+AGG - chr7_1:75541229-75541248 Msa1038620:intron 35.0%
! ATTCCAAGTCTAAAATTCGG+GGG + chr7_1:75541448-75541467 None:intergenic 35.0%
ACTTTGTCATGAAGCAAAGA+TGG - chr7_1:75541568-75541587 Msa1038620:intron 35.0%
GTGCATTGTAAAGTTGTATG+AGG + chr7_1:75541638-75541657 None:intergenic 35.0%
CTTTCCATCTTATTCAGTGT+CGG + chr7_1:75541829-75541848 None:intergenic 35.0%
!!! TGGACCCCTCATTTTTTTTT+GGG - chr7_1:75541902-75541921 Msa1038620:CDS 35.0%
TTGAGCTTGAACCATACAAT+GGG - chr7_1:75542310-75542329 Msa1038620:intron 35.0%
CATTCAACCTGTATGGAATA+GGG - chr7_1:75542402-75542421 Msa1038620:intron 35.0%
ATGGAATAGGGAGATTCTAA+TGG - chr7_1:75542414-75542433 Msa1038620:intron 35.0%
GTATTTCTTCGTATTCACGA+TGG + chr7_1:75542468-75542487 None:intergenic 35.0%
TCTTCCTTGATGTACGTATT+TGG + chr7_1:75542496-75542515 None:intergenic 35.0%
CTGTGAAGAAGAAAGATTGA+TGG + chr7_1:75542537-75542556 None:intergenic 35.0%
AATATCCGACAAGCAACAAA+GGG + chr7_1:75542744-75542763 None:intergenic 35.0%
TAATATCCGACAAGCAACAA+AGG + chr7_1:75542745-75542764 None:intergenic 35.0%
! TTGTTGCTTGTCGGATATTA+TGG - chr7_1:75542745-75542764 Msa1038620:intron 35.0%
CGGCATTTCTCAAAAAACAA+AGG - chr7_1:75542889-75542908 Msa1038620:intron 35.0%
GTGAGAACAAAAGCTTAACA+AGG - chr7_1:75543002-75543021 Msa1038620:intron 35.0%
AACTATTGGCAGACAAGAAA+AGG - chr7_1:75543126-75543145 Msa1038620:intron 35.0%
CAACAACATTTACTAGACTC+TGG + chr7_1:75543178-75543197 None:intergenic 35.0%
GAGTCTAGTAAATGTTGTTG+TGG - chr7_1:75543178-75543197 Msa1038620:intron 35.0%
ATGTTGGTACTGTTATGGTA+CGG + chr7_1:75543296-75543315 None:intergenic 35.0%
ACTCAACTGCATAACCTAAT+GGG + chr7_1:75543446-75543465 None:intergenic 35.0%
AACTCAACTGCATAACCTAA+TGG + chr7_1:75543447-75543466 None:intergenic 35.0%
! GCATTCTTTGGCAGATTTTA+TGG - chr7_1:75543506-75543525 Msa1038620:CDS 35.0%
TACAAAGGGAAGAACTTGTA+TGG - chr7_1:75543551-75543570 Msa1038620:CDS 35.0%
TCTCAGAAGTAAATTTCGGA+TGG - chr7_1:75543598-75543617 Msa1038620:CDS 35.0%
CTCAGAAGTAAATTTCGGAT+GGG - chr7_1:75543599-75543618 Msa1038620:CDS 35.0%
TCAGAAGTAAATTTCGGATG+GGG - chr7_1:75543600-75543619 Msa1038620:CDS 35.0%
! GTGGAATTGGATCTTTTCTT+GGG - chr7_1:75543652-75543671 Msa1038620:CDS 35.0%
! TGGAATTGGATCTTTTCTTG+GGG - chr7_1:75543653-75543672 Msa1038620:CDS 35.0%
! TCTCCTTTTGCATTCTTATG+CGG + chr7_1:75543693-75543712 None:intergenic 35.0%
AAGAATGCAAAAGGAGAAGA+AGG - chr7_1:75543696-75543715 Msa1038620:five_prime_UTR 35.0%
AGAATGCAAAAGGAGAAGAA+GGG - chr7_1:75543697-75543716 Msa1038620:five_prime_UTR 35.0%
CACTACTATTGTTCACAGTG+CGG - chr7_1:75540861-75540880 Msa1038620:CDS 40.0%
! GAGTTTAACTTCATGAGGAG+TGG + chr7_1:75540921-75540940 None:intergenic 40.0%
! GAGAGGAGTTTAACTTCATG+AGG + chr7_1:75540926-75540945 None:intergenic 40.0%
TCCGACATAGATGATCAAGA+AGG - chr7_1:75540944-75540963 Msa1038620:CDS 40.0%
GCCTTCTTGATCATCTATGT+CGG + chr7_1:75540948-75540967 None:intergenic 40.0%
TGACAGGAAGATTGAAACGA+AGG + chr7_1:75540970-75540989 None:intergenic 40.0%
GGGTCTTTCTCTTTCATTGA+TGG + chr7_1:75541013-75541032 None:intergenic 40.0%
GAAAGAGAAAGACCCTGTTA+AGG - chr7_1:75541018-75541037 Msa1038620:intron 40.0%
!! GTTTATTTCTATCCAGCTGC+AGG - chr7_1:75541070-75541089 Msa1038620:intron 40.0%
ATTTCTTGGAAGCAAGGGAA+TGG + chr7_1:75541214-75541233 None:intergenic 40.0%
TAAGACCTGTATGAGTCGAA+CGG + chr7_1:75541278-75541297 None:intergenic 40.0%
! TGTTGTAAGTGTAGCATTGG+CGG + chr7_1:75541670-75541689 None:intergenic 40.0%
CAGTGTTGTAAGTGTAGCAT+TGG + chr7_1:75541673-75541692 None:intergenic 40.0%
AAGCTTTCTAACCAGTCCAA+CGG - chr7_1:75541879-75541898 Msa1038620:CDS 40.0%
!!! GTGGACCCCTCATTTTTTTT+TGG - chr7_1:75541901-75541920 Msa1038620:CDS 40.0%
!! TTAGCTCCTGTCTGTTTTAG+CGG + chr7_1:75542144-75542163 None:intergenic 40.0%
CAAGTGTGGTGGTTTCATAA+TGG - chr7_1:75542285-75542304 Msa1038620:intron 40.0%
CATTGTATGGTTCAAGCTCA+AGG + chr7_1:75542311-75542330 None:intergenic 40.0%
CTTGAGCTTGAACCATACAA+TGG - chr7_1:75542309-75542328 Msa1038620:intron 40.0%
AACCTTCCATTCAACCTGTA+TGG - chr7_1:75542395-75542414 Msa1038620:intron 40.0%
! TTCCATACAGGTTGAATGGA+AGG + chr7_1:75542400-75542419 None:intergenic 40.0%
! CCTATTCCATACAGGTTGAA+TGG + chr7_1:75542404-75542423 None:intergenic 40.0%
CCATTCAACCTGTATGGAAT+AGG - chr7_1:75542401-75542420 Msa1038620:intron 40.0%
AGAATCTCCCTATTCCATAC+AGG + chr7_1:75542412-75542431 None:intergenic 40.0%
TCCTTGATGTACGTATTTGG+CGG + chr7_1:75542493-75542512 None:intergenic 40.0%
ATCATTCGTACCTCTTCATC+TGG + chr7_1:75542676-75542695 None:intergenic 40.0%
TATTGGCAGACAAGAAAAGG+TGG - chr7_1:75543129-75543148 Msa1038620:intron 40.0%
! TACGGGTACGTTTTGCAAAT+TGG - chr7_1:75543402-75543421 Msa1038620:CDS 40.0%
! CGTTTTGCAAATTGGAGTAC+CGG - chr7_1:75543410-75543429 Msa1038620:CDS 40.0%
AGCAAAAGCTCAAGTTACAG+AGG - chr7_1:75543476-75543495 Msa1038620:CDS 40.0%
! AGAGGAGTACATGCATTCTT+TGG - chr7_1:75543494-75543513 Msa1038620:CDS 40.0%
! GAACTTGTATGGTGTCAGAT+TGG - chr7_1:75543562-75543581 Msa1038620:CDS 40.0%
! GGTGGAATTGGATCTTTTCT+TGG - chr7_1:75543651-75543670 Msa1038620:CDS 40.0%
! GGAATTGGATCTTTTCTTGG+GGG - chr7_1:75543654-75543673 Msa1038620:CDS 40.0%
ATTCTTATGCGGGACAAGAA+AGG + chr7_1:75543682-75543701 None:intergenic 40.0%
! CTCCTTTTGCATTCTTATGC+GGG + chr7_1:75543692-75543711 None:intergenic 40.0%
CGCACTGTGAACAATAGTAG+TGG + chr7_1:75540863-75540882 None:intergenic 45.0%
TACTATTGTTCACAGTGCGG+AGG - chr7_1:75540864-75540883 Msa1038620:CDS 45.0%
!! TGGAAGTACCAACTCTGGTT+GGG + chr7_1:75540891-75540910 None:intergenic 45.0%
CTTGATCATCTATGTCGGAG+AGG + chr7_1:75540943-75540962 None:intergenic 45.0%
ATTTCTATCCAGCTGCAGGA+AGG - chr7_1:75541074-75541093 Msa1038620:intron 45.0%
!! AAGTTGATGGTGGATTGCAC+TGG - chr7_1:75541118-75541137 Msa1038620:intron 45.0%
!! AGTTGATGGTGGATTGCACT+GGG - chr7_1:75541119-75541138 Msa1038620:intron 45.0%
AAGACCTGTATGAGTCGAAC+GGG + chr7_1:75541277-75541296 None:intergenic 45.0%
GATTGTAATGAGATCAGGGC+TGG - chr7_1:75541387-75541406 Msa1038620:intron 45.0%
TGTCGGCCTAACAGATTCTA+AGG + chr7_1:75541812-75541831 None:intergenic 45.0%
TAGGCCGACACTGAATAAGA+TGG - chr7_1:75541822-75541841 Msa1038620:CDS 45.0%
!! TTTGCATTTCTAGCGTCCCA+AGG - chr7_1:75542045-75542064 Msa1038620:CDS 45.0%
CATTCACCGCTAAAACAGAC+AGG - chr7_1:75542135-75542154 Msa1038620:CDS 45.0%
TTGAACCATACAATGGGCGA+TGG - chr7_1:75542316-75542335 Msa1038620:intron 45.0%
TGAGACAATTCGTGACTGCA+TGG - chr7_1:75542347-75542366 Msa1038620:intron 45.0%
GAGACAATTCGTGACTGCAT+GGG - chr7_1:75542348-75542367 Msa1038620:intron 45.0%
TCCGCCAAATACGTACATCA+AGG - chr7_1:75542489-75542508 Msa1038620:intron 45.0%
GTGCATTGAGAAAGGTGAAG+TGG + chr7_1:75542592-75542611 None:intergenic 45.0%
CGTATGCAGTGCATTGAGAA+AGG + chr7_1:75542600-75542619 None:intergenic 45.0%
! GCTAACCCTTTGTTGCTTGT+CGG - chr7_1:75542736-75542755 Msa1038620:intron 45.0%
AACCCATTAGCTACGTTGCA+CGG - chr7_1:75542820-75542839 Msa1038620:intron 45.0%
! AACAAAGGTACGGGTACGTT+AGG - chr7_1:75542904-75542923 Msa1038620:intron 45.0%
TTGGTACTGTTATGGTACGG+CGG + chr7_1:75543293-75543312 None:intergenic 45.0%
TTTGCAAAACGTACCCGTAC+CGG + chr7_1:75543401-75543420 None:intergenic 45.0%
! GTGTATGGTGGAGCAGTAAA+AGG - chr7_1:75543630-75543649 Msa1038620:CDS 45.0%
! TATGGTGGAGCAGTAAAAGG+TGG - chr7_1:75543633-75543652 Msa1038620:CDS 45.0%
GGAGCAGTAAAAGGTGGAAT+TGG - chr7_1:75543639-75543658 Msa1038620:CDS 45.0%
GTCCCGCATAAGAATGCAAA+AGG - chr7_1:75543687-75543706 Msa1038620:exon 45.0%
!! AAAAAACAAAAAAATAAAAT+TGG - chr7_1:75543318-75543337 Msa1038620:CDS 5.0%
!! CTGGAAGTACCAACTCTGGT+TGG + chr7_1:75540892-75540911 None:intergenic 50.0%
ATCCAGCTGCAGGAAGGATT+AGG - chr7_1:75541080-75541099 Msa1038620:intron 50.0%
TCCAGCTGCAGGAAGGATTA+GGG - chr7_1:75541081-75541100 Msa1038620:intron 50.0%
!! GTTGATGGTGGATTGCACTG+GGG - chr7_1:75541120-75541139 Msa1038620:intron 50.0%
TCTTGGAAGCAAGGGAATGG+AGG + chr7_1:75541211-75541230 None:intergenic 50.0%
!! GTTTGGGTTGCCTTACCCTT+AGG + chr7_1:75541413-75541432 None:intergenic 50.0%
! AGGCCCCCGAATTTTAGACT+TGG - chr7_1:75541442-75541461 Msa1038620:intron 50.0%
AAGCAAAGATGGTAGACGCG+AGG - chr7_1:75541579-75541598 Msa1038620:intron 50.0%
CTTTCTAACCAGTCCAACGG+TGG - chr7_1:75541882-75541901 Msa1038620:CDS 50.0%
AAAAATGAGGGGTCCACCGT+TGG + chr7_1:75541898-75541917 None:intergenic 50.0%
CAGGTTACACGTCTCAAGTG+TGG - chr7_1:75542271-75542290 Msa1038620:intron 50.0%
GTTACACGTCTCAAGTGTGG+TGG - chr7_1:75542274-75542293 Msa1038620:intron 50.0%
TGGTTGCAAGTAACGTGTGG+CGG + chr7_1:75542448-75542467 None:intergenic 50.0%
CGATGGTTGCAAGTAACGTG+TGG + chr7_1:75542451-75542470 None:intergenic 50.0%
GAGAAAGGTGAAGTGGAACC+AGG + chr7_1:75542585-75542604 None:intergenic 50.0%
! CCACCTGCAATGCTTTTGTG+CGG + chr7_1:75542651-75542670 None:intergenic 50.0%
ACCACTGCAAAGGAGCTTTG+TGG - chr7_1:75542796-75542815 Msa1038620:intron 50.0%
TCCACAAAGCTCCTTTGCAG+TGG + chr7_1:75542800-75542819 None:intergenic 50.0%
ACCCATTAGCTACGTTGCAC+GGG - chr7_1:75542821-75542840 Msa1038620:intron 50.0%
ACCCGTGCAACGTAGCTAAT+GGG + chr7_1:75542825-75542844 None:intergenic 50.0%
TTGCAAAACGTACCCGTACC+GGG + chr7_1:75543400-75543419 None:intergenic 50.0%
TCTTCAGGGGGCAAGCAAAT+TGG + chr7_1:75543732-75543751 None:intergenic 50.0%
!! GCAGCTGGAAGTACCAACTC+TGG + chr7_1:75540896-75540915 None:intergenic 55.0%
TCCCTAATCCTTCCTGCAGC+TGG + chr7_1:75541085-75541104 None:intergenic 55.0%
AGCTGCAGGAAGGATTAGGG+AGG - chr7_1:75541084-75541103 Msa1038620:intron 55.0%
GCTGCAGGAAGGATTAGGGA+GGG - chr7_1:75541085-75541104 Msa1038620:intron 55.0%
!! GAAGGATTAGGGAGGGTGCT+GGG - chr7_1:75541092-75541111 Msa1038620:intron 55.0%
!! TGCTGGGCGAAAGTTGATGG+TGG - chr7_1:75541108-75541127 Msa1038620:intron 55.0%
!! ATGGTGGATTGCACTGGGGA+GGG - chr7_1:75541124-75541143 Msa1038620:intron 55.0%
CCTGTATGAGTCGAACGGGA+CGG + chr7_1:75541273-75541292 None:intergenic 55.0%
!! ATGAGATCAGGGCTGGCCTA+AGG - chr7_1:75541394-75541413 Msa1038620:intron 55.0%
!! TGAGATCAGGGCTGGCCTAA+GGG - chr7_1:75541395-75541414 Msa1038620:intron 55.0%
GCAACCCAAACCCTCGCTTT+AGG - chr7_1:75541422-75541441 Msa1038620:intron 55.0%
AATTCGGGGGCCTAAAGCGA+GGG + chr7_1:75541435-75541454 None:intergenic 55.0%
AAATTCGGGGGCCTAAAGCG+AGG + chr7_1:75541436-75541455 None:intergenic 55.0%
CAGCTCCATCGCCCATTGTA+TGG + chr7_1:75542324-75542343 None:intergenic 55.0%
CATACAATGGGCGATGGAGC+TGG - chr7_1:75542322-75542341 Msa1038620:intron 55.0%
CGTGACTGCATGGGCAGAAA+TGG - chr7_1:75542357-75542376 Msa1038620:intron 55.0%
GGTTGCAAGTAACGTGTGGC+GGG + chr7_1:75542447-75542466 None:intergenic 55.0%
!! CTGCCGCACAAAAGCATTGC+AGG - chr7_1:75542645-75542664 Msa1038620:intron 55.0%
!! CCGCACAAAAGCATTGCAGG+TGG - chr7_1:75542648-75542667 Msa1038620:intron 55.0%
ATGCACGTTCTGCACGTTCG+AGG - chr7_1:75542707-75542726 Msa1038620:intron 55.0%
CACCCGTGCAACGTAGCTAA+TGG + chr7_1:75542826-75542845 None:intergenic 55.0%
TTAGCTACGTTGCACGGGTG+CGG - chr7_1:75542826-75542845 Msa1038620:intron 55.0%
GTACGGCGGTGGTACTCTTA+GGG + chr7_1:75543279-75543298 None:intergenic 55.0%
GTACTGTTATGGTACGGCGG+TGG + chr7_1:75543290-75543309 None:intergenic 55.0%
!! CCTAATGGGCTCTGAAGCAC+CGG + chr7_1:75543432-75543451 None:intergenic 55.0%
GGATGGGGTGAAGCTGTGTA+TGG - chr7_1:75543615-75543634 Msa1038620:CDS 55.0%
TGGGGTGAAGCTGTGTATGG+TGG - chr7_1:75543618-75543637 Msa1038620:CDS 55.0%
TCATGAGGAGTGGGTGCAGC+TGG + chr7_1:75540911-75540930 None:intergenic 60.0%
! GGAAGGATTAGGGAGGGTGC+TGG - chr7_1:75541091-75541110 Msa1038620:intron 60.0%
!! GGGTGCTGGGCGAAAGTTGA+TGG - chr7_1:75541105-75541124 Msa1038620:intron 60.0%
!! GATGGTGGATTGCACTGGGG+AGG - chr7_1:75541123-75541142 Msa1038620:intron 60.0%
CCGTCCCGTTCGACTCATAC+AGG - chr7_1:75541270-75541289 Msa1038620:intron 60.0%
!! TCAGGGCTGGCCTAAGGGTA+AGG - chr7_1:75541400-75541419 Msa1038620:intron 60.0%
GGGGCCTAAAGCGAGGGTTT+GGG + chr7_1:75541429-75541448 None:intergenic 60.0%
GCATGGGCAGAAATGGCTCG+AGG - chr7_1:75542364-75542383 Msa1038620:intron 60.0%
TGGAACCAGGCGACGAATCG+CGG + chr7_1:75542572-75542591 None:intergenic 60.0%
GCAGGTGGAGCCAGATGAAG+AGG - chr7_1:75542663-75542682 Msa1038620:intron 60.0%
GGCAGCAGTCACCACTGCAA+AGG - chr7_1:75542786-75542805 Msa1038620:intron 60.0%
TAGCTACGTTGCACGGGTGC+GGG - chr7_1:75542827-75542846 Msa1038620:intron 60.0%
TACGGTACCCGGTACGGGTA+CGG - chr7_1:75542850-75542869 Msa1038620:intron 60.0%
GGTACGGCGGTGGTACTCTT+AGG + chr7_1:75543280-75543299 None:intergenic 60.0%
!! CGCGGGTACTGGTACTCGTA+CGG + chr7_1:75543372-75543391 None:intergenic 60.0%
! ACCAGTACCCGCGAAGTACC+CGG - chr7_1:75543379-75543398 Msa1038620:CDS 60.0%
! TACCCGCGAAGTACCCGGTA+CGG - chr7_1:75543384-75543403 Msa1038620:CDS 60.0%
TACCCGTACCGGGTACTTCG+CGG + chr7_1:75543390-75543409 None:intergenic 60.0%
CCGGTGCTTCAGAGCCCATT+AGG - chr7_1:75543429-75543448 Msa1038620:CDS 60.0%
GCGGAGGTCCCAACCAGAGT+TGG - chr7_1:75540880-75540899 Msa1038620:CDS 65.0%
GGGGGCCTAAAGCGAGGGTT+TGG + chr7_1:75541430-75541449 None:intergenic 65.0%
TGAGGGGTCCACCGTTGGAC+TGG + chr7_1:75541893-75541912 None:intergenic 65.0%
CATAGCCGCGATTCGTCGCC+TGG - chr7_1:75542564-75542583 Msa1038620:intron 65.0%
ACGTTGCACGGGTGCGGGTA+CGG - chr7_1:75542832-75542851 Msa1038620:intron 65.0%
TGCGGGTACGGTACCCGGTA+CGG - chr7_1:75542844-75542863 Msa1038620:intron 65.0%
ACGGTACCCGGTACGGGTAC+GGG - chr7_1:75542851-75542870 Msa1038620:intron 65.0%
TACGGGTACGGGTGCGGGTA+CGG - chr7_1:75542862-75542881 Msa1038620:intron 65.0%
ACGGGTGCGGGTACGGGATA+CGG - chr7_1:75542869-75542888 Msa1038620:intron 65.0%
ACCGGGTACTTCGCGGGTAC+TGG + chr7_1:75543383-75543402 None:intergenic 65.0%
! ACCCGCGAAGTACCCGGTAC+GGG - chr7_1:75543385-75543404 Msa1038620:CDS 65.0%
ACCCGTACCGGGTACTTCGC+GGG + chr7_1:75543389-75543408 None:intergenic 65.0%
ACGGGTGCGGGTACGGTACC+CGG - chr7_1:75542839-75542858 Msa1038620:intron 70.0%
GCGGGTACGGTACCCGGTAC+GGG - chr7_1:75542845-75542864 Msa1038620:intron 70.0%
ACCCGGTACGGGTACGGGTG+CGG - chr7_1:75542856-75542875 Msa1038620:intron 70.0%
ACCCGCACCCGTACCCGTAC+CGG + chr7_1:75542861-75542880 None:intergenic 70.0%
ACGGGTACGGGTGCGGGTAC+GGG - chr7_1:75542863-75542882 Msa1038620:intron 70.0%
CCCGCACCCGTACCCGTACC+GGG + chr7_1:75542860-75542879 None:intergenic 75.0%
CCCGGTACGGGTACGGGTGC+GGG - chr7_1:75542857-75542876 Msa1038620:intron 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 75540778 75543758 75540778 ID=Msa1038620;Name=Msa1038620
chr7_1 mRNA 75540778 75543758 75540778 ID=Msa1038620-mRNA-1;Parent=Msa1038620;Name=Msa1038620-mRNA-1;_AED=0.08;_eAED=0.08;_QI=67|0.5|0.33|1|1|0.66|3|0|441
chr7_1 exon 75540778 75541016 75540778 ID=Msa1038620-mRNA-1:exon:19304;Parent=Msa1038620-mRNA-1
chr7_1 exon 75541626 75542262 75541626 ID=Msa1038620-mRNA-1:exon:19303;Parent=Msa1038620-mRNA-1
chr7_1 exon 75543245 75543758 75543245 ID=Msa1038620-mRNA-1:exon:19302;Parent=Msa1038620-mRNA-1
chr7_1 five_prime_UTR 75543692 75543758 75543692 ID=Msa1038620-mRNA-1:five_prime_utr;Parent=Msa1038620-mRNA-1
chr7_1 CDS 75543245 75543691 75543245 ID=Msa1038620-mRNA-1:cds;Parent=Msa1038620-mRNA-1
chr7_1 CDS 75541626 75542262 75541626 ID=Msa1038620-mRNA-1:cds;Parent=Msa1038620-mRNA-1
chr7_1 CDS 75540778 75541016 75540778 ID=Msa1038620-mRNA-1:cds;Parent=Msa1038620-mRNA-1
Gene Sequence

>Msa1038620

ATGACTTCTTCATCACCACTACTATTGTTCACAGTGCGGAGGTCCCAACCAGAGTTGGTACTTCCAGCTGCACCCACTCCTCATGAAGTTAAACTCCTCTCCGACATAGATGATCAAGAAGGCCTTCGTTTCAATCTTCCTGTCATATTTGTCTTTCGTCATGAACCATCAATGAAAGAGAAAGACCCTGTTAAGGTTCTTAAACATGCACTCTCACAAACACTTGTTTATTTCTATCCAGCTGCAGGAAGGATTAGGGAGGGTGCTGGGCGAAAGTTGATGGTGGATTGCACTGGGGAGGGTGTCATGTTCATTGAAGCTGAAGCTGATATAACACTTGATCAATTTGGTGATGCTCTGCAACCTCCATTCCCTTGCTTCCAAGAAATTCTATACGATGTTCCAGGATCAGAATATATTATTGACCGTCCCGTTCGACTCATACAGGTTACACGTCTCAAGTGTGGTGGTTTCATAATGGCCTTGAGCTTGAACCATACAATGGGCGATGGAGCTGGTTTGAGACAATTCGTGACTGCATGGGCAGAAATGGCTCGAGGAGCAAATCAACCTTCCATTCAACCTGTATGGAATAGGGAGATTCTAATGGCAAGAGACCCGCCACACGTTACTTGCAACCATCGTGAATACGAAGAAATACTTCCGCCAAATACGTACATCAAGGAAGAAGATACTACTATTGTAGTCCATCAATCTTTCTTCTTCACAGCTGCTCACATAGCCGCGATTCGTCGCCTGGTTCCACTTCACCTTTCTCAATGCACTGCATACGATCTTATCACTGCATGTTATTGGTGCTGCCGCACAAAAGCATTGCAGGTGGAGCCAGATGAAGAGGTACGAATGATGTGCATCGTTAATGCACGTTCTGCACGTTCGAGGTTTAGTGCTAACCCTTTGTTGCTTGTCGGATATTATGGTAATTGTATTGCTTTCTCGGCAGCAGTCACCACTGCAAAGGAGCTTTGTGGAAACCCATTAGCTACGTTGCACGGGTGCGGGTACGGTACCCGGTACGGGTACGGGTGCGGGTACGGGATACGGCATTTCTCAAAAAACAAAGATTTTATGGTTATTAAGGAAAGATGTTTATTTACAAAGGGAAGAACTTGTATGGTGTCAGATTGGACTCGTGCTAAGTTCTCAGAAGTAAATTTCGGATGGGGTGAAGCTGTGTATGGTGGAGCAGTAAAAGGTGGAATTGGATCTTTTCTTGGGGGAACCTTTCTTGTCCCGCATAAGAATGCAAAAGGAGAAGAAGGGTTAATATTACCAATTTGCTTGCCCCCTGAAGATATGAAG
Protein sequence

>Msa1038620

MTSSSPLLLFTVRRSQPELVLPAAPTPHEVKLLSDIDDQEGLRFNLPVIFVFRHEPSMKEKDPVKVLKHALSQTLVYFYPAAGRIREGAGRKLMVDCTGEGVMFIEAEADITLDQFGDALQPPFPCFQEILYDVPGSEYIIDRPVRLIQVTRLKCGGFIMALSLNHTMGDGAGLRQFVTAWAEMARGANQPSIQPVWNREILMARDPPHVTCNHREYEEILPPNTYIKEEDTTIVVHQSFFFTAAHIAAIRRLVPLHLSQCTAYDLITACYWCCRTKALQVEPDEEVRMMCIVNARSARSRFSANPLLLVGYYGNCIAFSAAVTTAKELCGNPLATLHGCGYGTRYGYGCGYGIRHFSKNKDFMVIKERCLFTKGRTCMVSDWTRAKFSEVNFGWGEAVYGGAVKGGIGSFLGGTFLVPHKNAKGEEGLILPICLPPEDMK