AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1129110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129110 MtrunA17_Chr7g0273721 93.939 462 27 1 1 461 1 462 0.0 911
Msa1129110 MtrunA17_Chr5g0433641 86.928 459 60 0 3 461 2 460 0.0 852
Msa1129110 MtrunA17_Chr7g0273791 77.851 456 100 1 3 458 2 456 0.0 761
Msa1129110 MtrunA17_Chr7g0273781 76.790 461 105 2 1 461 34 492 0.0 756
Msa1129110 MtrunA17_Chr7g0273761 75.541 462 112 1 1 461 372 833 0.0 741
Msa1129110 MtrunA17_Chr7g0273761 71.197 309 89 0 148 456 32 340 3.34e-157 466
Msa1129110 MtrunA17_Chr7g0273731 75.839 447 107 1 1 447 83 528 0.0 732
Msa1129110 MtrunA17_Chr1g0165671 60.349 459 174 5 7 461 23 477 0.0 573
Msa1129110 MtrunA17_Chr1g0165681 54.113 462 200 8 7 461 5 461 2.03e-178 507
Msa1129110 MtrunA17_Chr1g0165661 54.466 459 200 6 7 461 5 458 1.12e-177 505
Msa1129110 MtrunA17_Chr1g0191081 56.858 452 180 7 3 447 9 452 5.95e-176 500
Msa1129110 MtrunA17_Chr1g0165711 51.310 458 175 7 7 461 5 417 7.03e-154 443
Msa1129110 MtrunA17_Chr7g0273701 89.080 174 19 0 288 461 1 174 1.37e-114 334
Msa1129110 MtrunA17_Chr7g0273741 81.633 147 27 0 3 149 2 148 4.80e-83 252
Msa1129110 MtrunA17_Chr6g0471381 51.765 255 117 5 199 450 6 257 6.80e-83 256
Msa1129110 MtrunA17_Chr8g0386141 35.476 389 237 8 9 392 5 384 1.95e-80 256
Msa1129110 MtrunA17_Chr3g0132001 33.178 428 270 8 11 435 14 428 4.57e-79 252
Msa1129110 MtrunA17_Chr7g0224391 34.794 388 239 8 14 396 19 397 6.51e-76 244
Msa1129110 MtrunA17_Chr3g0098961 72.483 149 41 0 1 149 3 151 2.28e-73 229
Msa1129110 MtrunA17_Chr6g0471371 56.571 175 67 1 7 181 5 170 8.69e-66 209
Msa1129110 MtrunA17_Chr1g0165741 63.636 143 52 0 7 149 5 147 1.40e-62 199
Msa1129110 MtrunA17_Chr6g0471971 46.639 238 100 6 163 397 1 214 2.10e-61 199
Msa1129110 MtrunA17_Chr2g0306321 30.805 435 284 11 19 439 26 457 1.15e-59 202
Msa1129110 MtrunA17_Chr8g0353421 63.780 127 46 0 4 130 2 128 2.72e-57 185
Msa1129110 MtrunA17_Chr3g0141851 31.888 392 241 11 21 400 22 399 1.47e-56 194
Msa1129110 MtrunA17_Chr7g0273691 87.368 95 12 0 167 261 1 95 2.52e-56 181
Msa1129110 MtrunA17_Chr2g0334001 29.241 448 289 14 7 442 1 432 4.37e-55 189
Msa1129110 MtrunA17_Chr4g0027071 30.493 446 274 16 18 439 19 452 3.33e-52 182
Msa1129110 MtrunA17_Chr4g0001861 29.117 419 259 14 43 442 34 433 1.84e-50 177
Msa1129110 MtrunA17_Chr8g0371821 27.088 443 295 13 7 439 1 425 8.54e-46 164
Msa1129110 MtrunA17_Chr3g0113821 29.750 400 261 10 10 396 4 396 1.15e-45 164
Msa1129110 MtrunA17_Chr2g0283361 31.778 343 221 7 56 391 48 384 6.39e-44 160
Msa1129110 MtrunA17_Chr7g0270771 31.333 300 163 8 7 293 1 270 1.00e-42 152
Msa1129110 MtrunA17_Chr7g0253501 27.952 415 253 13 18 394 9 415 7.77e-39 146
Msa1129110 MtrunA17_Chr7g0253531 28.434 415 253 15 17 394 8 415 1.05e-38 146
Msa1129110 MtrunA17_Chr6g0471891 42.408 191 82 4 234 422 1 165 1.39e-38 139
Msa1129110 MtrunA17_Chr7g0252731 28.311 438 273 16 4 429 8 416 2.55e-38 144
Msa1129110 MtrunA17_Chr4g0072041 27.938 451 279 14 19 439 22 456 2.87e-38 144
Msa1129110 MtrunA17_Chr3g0087401 25.747 435 258 12 19 415 10 417 3.16e-37 141
Msa1129110 MtrunA17_Chr4g0054081 27.294 436 267 14 37 439 34 452 2.22e-36 139
Msa1129110 MtrunA17_Chr2g0311401 29.221 308 196 10 147 442 5 302 4.82e-36 135
Msa1129110 MtrunA17_Chr7g0253541 25.000 468 289 18 19 443 12 460 1.91e-34 134
Msa1129110 MtrunA17_Chr6g0470591 27.723 404 249 15 65 439 70 459 6.36e-33 130
Msa1129110 MtrunA17_Chr3g0106691 26.786 392 263 11 18 391 63 448 1.03e-32 130
Msa1129110 MtrunA17_Chr3g0106661 27.983 461 277 18 18 439 17 461 1.52e-30 123
Msa1129110 MtrunA17_Chr5g0442691 26.128 421 261 14 9 393 31 437 3.26e-30 122
Msa1129110 MtrunA17_Chr5g0442701 26.128 421 261 14 9 393 8 414 1.98e-29 120
Msa1129110 MtrunA17_Chr1g0165721 50.909 110 52 2 349 456 1 110 4.59e-29 110
Msa1129110 MtrunA17_Chr7g0235531 25.000 444 288 14 18 437 11 433 1.06e-28 117
Msa1129110 MtrunA17_Chr3g0106721 29.730 296 183 9 61 341 63 348 8.34e-28 115
Msa1129110 MtrunA17_Chr7g0273681 86.538 52 7 0 93 144 1 52 1.14e-26 101
Msa1129110 MtrunA17_Chr3g0106711 33.508 191 115 5 18 199 17 204 3.10e-26 106
Msa1129110 MtrunA17_Chr1g0165731 44.737 114 56 4 163 273 1 110 4.70e-26 102
Msa1129110 MtrunA17_Chr5g0442721 26.764 411 250 16 63 438 64 458 8.63e-26 109
Msa1129110 MtrunA17_Chr4g0004691 33.721 172 100 5 19 186 12 173 1.46e-25 103
Msa1129110 MtrunA17_Chr3g0113181 24.299 428 256 12 54 435 54 459 4.84e-25 107
Msa1129110 MtrunA17_Chr3g0134091 26.097 433 269 16 25 432 30 436 2.11e-24 105
Msa1129110 MtrunA17_Chr3g0134121 26.526 426 275 17 26 432 31 437 4.82e-24 104
Msa1129110 MtrunA17_Chr5g0408911 25.058 431 273 15 24 430 33 437 5.15e-24 104
Msa1129110 MtrunA17_Chr3g0106761 25.915 328 217 10 81 391 29 347 6.12e-24 103
Msa1129110 MtrunA17_Chr3g0106741 26.300 327 217 9 81 391 60 378 6.28e-23 100
Msa1129110 MtrunA17_Chr3g0134041 25.990 404 247 16 66 442 66 444 6.60e-23 100
Msa1129110 MtrunA17_Chr3g0095731 23.641 423 252 14 44 428 43 432 2.05e-22 99.8
Msa1129110 MtrunA17_Chr3g0123061 23.982 442 273 19 17 439 11 408 1.05e-21 97.1
Msa1129110 MtrunA17_Chr3g0095721 23.441 401 239 13 63 428 69 436 3.58e-21 95.9
Msa1129110 MtrunA17_Chr8g0354371 24.561 399 264 13 25 405 31 410 5.49e-21 95.1
Msa1129110 MtrunA17_Chr3g0134111 24.885 434 271 16 26 432 32 437 7.35e-21 94.7
Msa1129110 MtrunA17_Chr3g0134071 25.062 403 245 18 38 405 44 424 7.76e-21 95.1
Msa1129110 MtrunA17_Chr3g0125001 24.362 431 259 19 25 428 25 415 9.57e-21 94.4
Msa1129110 MtrunA17_Chr5g0438701 24.201 438 258 21 17 422 9 404 2.68e-20 93.2
Msa1129110 MtrunA17_Chr4g0010381 24.711 433 262 19 25 428 25 422 2.04e-19 90.5
Msa1129110 MtrunA17_Chr3g0134061 24.299 428 268 17 38 432 42 446 6.43e-19 89.0
Msa1129110 MtrunA17_Chr8g0374641 23.953 430 269 19 25 428 30 427 1.35e-18 87.8
Msa1129110 MtrunA17_Chr4g0053111 24.256 437 262 17 25 427 28 429 2.27e-18 87.4
Msa1129110 MtrunA17_Chr4g0010331 23.218 435 271 16 25 433 25 422 1.20e-17 85.1
Msa1129110 MtrunA17_Chr7g0273671 88.636 44 4 1 1 44 1 43 2.01e-17 75.9
Msa1129110 MtrunA17_Chr1g0199561 24.221 417 255 16 17 399 9 398 3.59e-17 83.6
Msa1129110 MtrunA17_Chr4g0053061 23.598 428 276 18 26 428 59 460 6.26e-17 83.2
Msa1129110 MtrunA17_Chr8g0374911 24.009 429 273 19 26 428 52 453 8.90e-17 82.4
Msa1129110 MtrunA17_Chr4g0053091 22.794 408 253 14 25 405 32 404 1.09e-16 82.0
Msa1129110 MtrunA17_Chr6g0471981 60.784 51 20 0 102 152 1 51 2.95e-16 73.2
Msa1129110 MtrunA17_Chr8g0361771 23.961 409 261 19 17 399 9 393 1.09e-15 79.0
Msa1129110 MtrunA17_Chr4g0053081 22.222 432 276 18 25 430 33 430 3.20e-15 77.4
Msa1129110 MtrunA17_Chr8g0359251 22.406 424 284 15 25 430 30 426 1.60e-14 75.5
Msa1129110 MtrunA17_Chr1g0169471 38.384 99 53 2 91 188 13 104 1.85e-14 69.7
Msa1129110 MtrunA17_Chr4g0010121 23.192 401 254 15 25 401 70 440 2.27e-14 75.1
Msa1129110 MtrunA17_Chr5g0414431 55.357 56 20 1 53 108 2 52 1.36e-13 65.1
Msa1129110 MtrunA17_Chr3g0087901 22.222 432 273 15 46 435 46 456 1.49e-13 72.4
Msa1129110 MtrunA17_Chr7g0252771 25.490 204 142 5 194 392 7 205 2.71e-13 69.7
Msa1129110 MtrunA17_Chr6g0456591 28.846 156 100 6 61 208 64 216 9.83e-13 67.8
Msa1129110 MtrunA17_Chr3g0106631 26.761 142 96 4 149 285 2 140 1.29e-11 62.8
Msa1129110 MtrunA17_Chr2g0311411 29.730 148 98 4 7 154 1 142 7.63e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129110 AT5G17540.1 48.817 465 226 8 4 461 2 461 1.54e-149 434
Msa1129110 AT3G03480.1 47.427 447 225 7 2 444 10 450 2.56e-138 405
Msa1129110 AT3G48720.1 32.832 399 256 8 1 396 1 390 5.39e-76 244
Msa1129110 AT5G41040.1 34.937 395 237 8 11 396 33 416 3.79e-75 243
Msa1129110 AT5G41040.2 34.937 395 237 8 11 396 17 400 4.95e-75 242
Msa1129110 AT5G63560.1 35.787 394 229 9 11 396 9 386 5.21e-75 241
Msa1129110 AT1G27620.1 30.070 429 274 10 14 435 12 421 7.62e-59 200
Msa1129110 AT1G03390.1 30.201 447 288 14 9 441 23 459 4.27e-56 193
Msa1129110 AT5G48930.1 28.440 436 283 13 18 439 10 430 1.85e-48 172
Msa1129110 AT2G19070.1 29.630 459 278 14 10 439 5 447 1.37e-46 167
Msa1129110 AT3G62160.1 29.950 404 247 11 7 398 1 380 1.49e-46 167
Msa1129110 AT2G40230.1 29.500 400 256 12 11 396 5 392 9.77e-45 162
Msa1129110 AT5G57840.1 27.609 460 284 16 11 444 3 439 1.52e-42 156
Msa1129110 AT1G28680.1 30.189 371 238 12 32 391 27 387 6.88e-42 155
Msa1129110 AT5G07080.1 29.854 412 254 13 1 391 6 403 1.40e-41 154
Msa1129110 AT1G65450.1 27.851 456 299 15 4 443 8 449 3.01e-41 153
Msa1129110 AT3G47170.1 27.521 476 285 17 9 443 10 466 7.04e-39 147
Msa1129110 AT1G28680.2 29.891 368 230 13 32 381 27 384 3.34e-38 143
Msa1129110 AT2G25150.1 28.330 473 276 17 6 442 7 452 3.18e-35 136
Msa1129110 AT2G23510.1 28.916 415 246 17 3 391 7 398 1.93e-34 134
Msa1129110 AT1G31490.1 24.020 408 264 14 8 393 3 386 2.09e-26 111
Msa1129110 AT5G42830.1 27.727 440 261 18 21 433 27 436 1.05e-25 109
Msa1129110 AT4G31910.1 26.483 472 295 21 6 441 2 457 1.57e-25 108
Msa1129110 AT4G15390.1 25.450 444 277 20 17 435 14 428 1.75e-25 108
Msa1129110 AT4G15390.2 25.450 444 277 20 17 435 14 428 1.75e-25 108
Msa1129110 AT5G07860.1 25.823 395 242 15 63 433 69 436 3.23e-23 102
Msa1129110 AT3G50280.1 25.862 406 255 16 25 409 28 408 1.25e-22 100
Msa1129110 AT3G50270.1 25.121 414 267 13 25 417 30 421 1.99e-22 99.8
Msa1129110 AT3G26040.1 23.457 405 253 15 17 394 9 383 4.99e-22 98.6
Msa1129110 AT1G78990.1 24.798 371 243 11 44 394 45 399 1.95e-21 97.1
Msa1129110 AT1G24430.1 25.400 437 275 18 17 435 11 414 2.33e-21 96.7
Msa1129110 AT5G38130.1 25.679 405 257 15 25 410 48 427 3.24e-21 96.3
Msa1129110 AT5G07850.1 24.053 449 269 19 21 433 28 440 1.21e-20 94.7
Msa1129110 AT1G24420.2 25.390 449 264 18 17 435 11 418 1.38e-20 94.4
Msa1129110 AT1G24420.1 25.390 449 264 18 17 435 11 418 1.38e-20 94.4
Msa1129110 AT1G32910.1 23.333 390 248 12 64 431 63 423 6.00e-20 92.4
Msa1129110 AT1G65450.3 26.351 296 196 10 159 443 1 285 8.83e-20 89.7
Msa1129110 AT3G30280.1 24.434 442 277 19 17 432 12 422 1.03e-19 91.7
Msa1129110 AT5G47980.1 25.446 448 278 18 15 436 9 426 5.87e-19 89.4
Msa1129110 AT2G39980.1 23.628 419 254 12 66 432 62 466 7.60e-19 89.4
Msa1129110 AT5G47950.1 24.138 435 270 19 17 432 12 405 3.28e-18 87.0
Msa1129110 AT5G23970.1 25.901 444 262 19 17 435 9 410 7.41e-18 85.9
Msa1129110 AT5G16410.1 23.699 346 233 12 66 394 91 422 9.05e-18 85.9
Msa1129110 AT3G50300.1 23.784 370 244 12 63 410 56 409 1.11e-15 79.3
Msa1129110 AT4G15400.1 26.126 444 272 20 17 438 11 420 7.03e-15 77.0
Msa1129110 AT5G23940.1 24.088 411 266 16 53 437 53 443 9.20e-15 76.6
Msa1129110 AT3G50280.2 24.113 282 189 10 140 409 10 278 7.65e-13 69.7

Find 150 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACACTTCTTAACTCTATT+TGG 0.145351 7_3:+81053359 Msa1129110:five_prime_UTR
ATCTTATCACTGCATGTTAT+TGG 0.178748 7_3:+81056008 Msa1129110:CDS
CACTCCTTGTAGGATGATTT+TGG 0.205974 7_3:-81056552 None:intergenic
TCTTCCTTGATGTACGTATT+TGG 0.224399 7_3:-81055881 None:intergenic
TGGGGTGTGGATAGGGTTGA+TGG 0.279515 7_3:+81056746 Msa1129110:three_prime_UTR
TGTGTCTTTGGTCATGGTTT+TGG 0.289871 7_3:+81056842 Msa1129110:three_prime_UTR
GATATAACACTTGATCAATT+TGG 0.295091 7_3:+81053735 Msa1129110:CDS
TTGTTGCTTGTCGGATATTA+TGG 0.296854 7_3:+81056124 Msa1129110:CDS
GCATGTTTAAGAACCTTAAC+AGG 0.298889 7_3:-81053594 None:intergenic
AGACGTGAACGGTGTGTAAC+AGG 0.307672 7_3:+81056968 Msa1129110:three_prime_UTR
ACAAACCTCTTCATATCTTC+AGG 0.311975 7_3:-81056502 None:intergenic
AACTCAACTGCATAACCTAA+TGG 0.312827 7_3:-81056202 None:intergenic
GGGTCTTTCTCTTTCATTGA+TGG 0.316385 7_3:-81053573 None:intergenic
CCATTCAACCTGTATGGAAT+AGG 0.323735 7_3:+81055789 Msa1129110:CDS
GAACATCGTATAGAATTTCT+TGG 0.334851 7_3:-81053788 None:intergenic
CTGCCGCACAAAAGCATTGC+AGG 0.340219 7_3:+81056033 Msa1129110:CDS
TTCTTATTTGGGGTGTGGAT+AGG 0.343255 7_3:+81056738 Msa1129110:three_prime_UTR
TCTTATTTGGGGTGTGGATA+GGG 0.353820 7_3:+81056739 Msa1129110:three_prime_UTR
TGGTAATTGTATTGCTTTCT+CGG 0.356387 7_3:+81056144 Msa1129110:CDS
AGAGGAGTACATGCATTCTT+TGG 0.363021 7_3:+81056252 Msa1129110:CDS
ATCCAGCTGCAGGAAGGATT+AGG 0.365308 7_3:+81053643 Msa1129110:CDS
ATCACAAGCTACAAACTATA+AGG 0.369159 7_3:-81056596 None:intergenic
CTTGACTGCATGGGCAGAAA+TGG 0.369373 7_3:+81055745 Msa1129110:CDS
GAGCTTTGTGGAAACCCATT+AGG 0.375078 7_3:+81056187 Msa1129110:CDS
AAGTTCTCAGAAGTAAATTT+CGG 0.389814 7_3:+81056352 Msa1129110:CDS
TCCAGCTGCAGGAAGGATTA+GGG 0.391602 7_3:+81053644 Msa1129110:CDS
AACAAATGAGAAAAGATTAG+AGG 0.400929 7_3:-81056775 None:intergenic
TCCCTAATCCTTCCTGCAGC+TGG 0.402307 7_3:-81053645 None:intergenic
AAACTAGGAGCACTCCTTGT+AGG 0.407155 7_3:-81056562 None:intergenic
GGGTGTGGATAGGGTTGATG+GGG 0.407349 7_3:+81056748 Msa1129110:three_prime_UTR
CATTCAACCTGTATGGAATA+GGG 0.408225 7_3:+81055790 Msa1129110:CDS
GCTAACCCTTTGTTGCTTGT+CGG 0.409807 7_3:+81056115 Msa1129110:CDS
TTTCTTGGAAGCAAGGGAAT+GGG 0.413240 7_3:-81053773 None:intergenic
GTGTATGGTGGAGCAGTAAA+AGG 0.414611 7_3:+81056388 Msa1129110:CDS
GGGTGCTGGGCGAAAGTTGA+TGG 0.420210 7_3:+81053668 Msa1129110:CDS
AACCTTCCATTCAACCTGTA+TGG 0.427456 7_3:+81055783 Msa1129110:CDS
TCATGAGGAGTGGGTGCAGC+TGG 0.430177 7_3:-81053471 None:intergenic
CAGCTCCATCGCCCATTGTA+TGG 0.433098 7_3:-81055709 None:intergenic
GGAAGGATTAGGGAGGGTGC+TGG 0.433324 7_3:+81053654 Msa1129110:CDS
ACTCAACTGCATAACCTAAT+GGG 0.436624 7_3:-81056201 None:intergenic
GAAAGATGTTTATTTACAAA+GGG 0.441292 7_3:+81056295 Msa1129110:CDS
GAAATTCTATACGATGTTCC+AGG 0.443086 7_3:+81053792 Msa1129110:CDS
CTGTGAAGAAGAAAGATTGA+TGG 0.446115 7_3:-81055922 None:intergenic
GGAAAGATGTTTATTTACAA+AGG 0.447433 7_3:+81056294 Msa1129110:CDS
CCTATTCCATACAGGTTGAA+TGG 0.453015 7_3:-81055789 None:intergenic
ATCATTCGTACCTCTTCATC+TGG 0.459290 7_3:-81056061 None:intergenic
AAGAATGCAAAAGGAGAAGA+AGG 0.460427 7_3:+81056454 Msa1129110:CDS
ATTTCTTGGAAGCAAGGGAA+TGG 0.473618 7_3:-81053774 None:intergenic
CATAGCCGCGATTCGTCGCC+TGG 0.474719 7_3:+81055952 Msa1129110:CDS
TACAAAGGGAAGAACTTGTA+TGG 0.478317 7_3:+81056309 Msa1129110:CDS
AGAATCTCCCTATTCCATAC+AGG 0.480630 7_3:-81055797 None:intergenic
ATGGTGGATTGCACTGGGGA+GGG 0.483447 7_3:+81053687 Msa1129110:CDS
CAAACCTCTTCATATCTTCA+GGG 0.484202 7_3:-81056501 None:intergenic
GCATCGTTAATGCACGTTCG+AGG 0.486409 7_3:+81056086 Msa1129110:CDS
TCAATAATATATTCTGATCC+TGG 0.488870 7_3:-81053810 None:intergenic
TCCTTGATGTACGTATTTGG+CGG 0.490692 7_3:-81055878 None:intergenic
AAGACCTGTATGAGTCGAAC+GGG 0.490760 7_3:-81053837 None:intergenic
CAAGTGTGGTGGTTTCATAA+TGG 0.491746 7_3:+81055673 Msa1129110:CDS
GAACTTGTATGGTGTCAGAT+TGG 0.493406 7_3:+81056320 Msa1129110:CDS
GTTTATTACTATCCAGCTGC+AGG 0.495084 7_3:+81053633 Msa1129110:CDS
TGAATCATTTATATATCAAT+CGG 0.496551 7_3:-81056622 None:intergenic
GGTGTGGATAGGGTTGATGG+GGG 0.496722 7_3:+81056749 Msa1129110:three_prime_UTR
TGGAAGTACCAACTCTGGTT+GGG 0.497528 7_3:-81053451 None:intergenic
GGATGGGGTGAAGCTGTGTA+TGG 0.499977 7_3:+81056373 Msa1129110:CDS
ATGGAATAGGGAGATTCTAA+TGG 0.500842 7_3:+81055802 Msa1129110:CDS
GAGAAAGGTGAAGTGGAACC+AGG 0.501342 7_3:-81055970 None:intergenic
GTCCCGCATAAGAATGCAAA+AGG 0.502043 7_3:+81056445 Msa1129110:CDS
GGGGTGTGGATAGGGTTGAT+GGG 0.505527 7_3:+81056747 Msa1129110:three_prime_UTR
CATACAATGGGCGATGGAGC+TGG 0.513365 7_3:+81055710 Msa1129110:CDS
GATGGTGGATTGCACTGGGG+AGG 0.517131 7_3:+81053686 Msa1129110:CDS
CTGGAAGTACCAACTCTGGT+TGG 0.519392 7_3:-81053452 None:intergenic
TATAGAATTTCTTGGAAGCA+AGG 0.520340 7_3:-81053780 None:intergenic
TTCCATACAGGTTGAATGGA+AGG 0.520405 7_3:-81055785 None:intergenic
GAAGGATTAGGGAGGGTGCT+GGG 0.522109 7_3:+81053655 Msa1129110:CDS
CGTATGCAGTGCATTGAGAA+AGG 0.526515 7_3:-81055985 None:intergenic
ATTCTTATGCGGGACAAGAA+AGG 0.526948 7_3:-81056437 None:intergenic
AGTTTAACTTCATGAGGAGT+GGG 0.527780 7_3:-81053480 None:intergenic
AAGTTGATGGTGGATTGCAC+TGG 0.528428 7_3:+81053681 Msa1129110:CDS
GGAGCAGTAAAAGGTGGAGT+TGG 0.530628 7_3:+81056397 Msa1129110:CDS
GAAAGAGAAAGACCCTGTTA+AGG 0.531454 7_3:+81053581 Msa1129110:CDS
GGTTGCAAGTAACGTGTGGC+GGG 0.531576 7_3:-81055832 None:intergenic
CCGTCCCGTTCGACTCATAC+AGG 0.533062 7_3:+81053833 Msa1129110:CDS
CTCCGCACTGTGAACAATAG+TGG 0.533503 7_3:-81053426 None:intergenic
CTCAGAAGTAAATTTCGGAT+GGG 0.534991 7_3:+81056357 Msa1129110:CDS
TTCTTGGAAGCAAGGGAATG+GGG 0.535703 7_3:-81053772 None:intergenic
TCTCAGAAGTAAATTTCGGA+TGG 0.535849 7_3:+81056356 Msa1129110:CDS
AAAGAGCTAAATGATATGCT+TGG 0.536007 7_3:+81056526 Msa1129110:CDS
TGAGACAATTCTTGACTGCA+TGG 0.536512 7_3:+81055735 Msa1129110:CDS
TTGAGCTTGAACCATACAAT+GGG 0.537449 7_3:+81055698 Msa1129110:CDS
ACCACTGCAAAGGAGCTTTG+TGG 0.545376 7_3:+81056175 Msa1129110:CDS
CCGCACAAAAGCATTGCAGG+TGG 0.552363 7_3:+81056036 Msa1129110:CDS
TTGTTTGAGTGATAACGCTA+TGG 0.553624 7_3:-81053332 None:intergenic
ATGTGTGTGCAATAATGAAA+AGG 0.554289 7_3:+81056674 Msa1129110:three_prime_UTR
ACACCGTTCACGTCTTGTGT+TGG 0.555223 7_3:-81056960 None:intergenic
AATATCCGACAAGCAACAAA+GGG 0.562922 7_3:-81056120 None:intergenic
GAGTTTAACTTCATGAGGAG+TGG 0.565045 7_3:-81053481 None:intergenic
TGGAACCAGGCGACGAATCG+CGG 0.566895 7_3:-81055957 None:intergenic
TCCACAAAGCTCCTTTGCAG+TGG 0.567433 7_3:-81056176 None:intergenic
CATTGTATGGTTCAAGCTCA+AGG 0.569460 7_3:-81055696 None:intergenic
AAGGTAGACAAGATGAAACT+AGG 0.571958 7_3:-81056577 None:intergenic
ATAGAATTTCTTGGAAGCAA+GGG 0.573708 7_3:-81053779 None:intergenic
GGCAGCAGTCACCACTGCAA+AGG 0.576150 7_3:+81056165 Msa1129110:CDS
GTACAAACTAGAGACGATAC+AGG 0.576675 7_3:-81053284 None:intergenic
TCAGAAGTAAATTTCGGATG+GGG 0.577426 7_3:+81056358 Msa1129110:CDS
CAACAAAACAAAATTGTGCT+AGG 0.577670 7_3:+81056992 Msa1129110:three_prime_UTR
GCAGCTGGAAGTACCAACTC+TGG 0.584510 7_3:-81053456 None:intergenic
GACGTGAACGGTGTGTAACA+GGG 0.586024 7_3:+81056969 Msa1129110:three_prime_UTR
CTTGAGCTTGAACCATACAA+TGG 0.589328 7_3:+81055697 Msa1129110:CDS
AGCAAAAGCTCAAGTTACAG+AGG 0.589925 7_3:+81056234 Msa1129110:CDS
ATAAATAAATATGAAAAGCA+AGG 0.590393 7_3:+81056709 Msa1129110:three_prime_UTR
TAATATCCGACAAGCAACAA+AGG 0.591430 7_3:-81056121 None:intergenic
GCAGGTGGAGCCAGATGAAG+AGG 0.592868 7_3:+81056051 Msa1129110:CDS
TCTTGGAAGCAAGGGAATGG+GGG 0.595701 7_3:-81053771 None:intergenic
GAGACAATTCTTGACTGCAT+GGG 0.598914 7_3:+81055736 Msa1129110:CDS
AGTTGATGGTGGATTGCACT+GGG 0.599197 7_3:+81053682 Msa1129110:CDS
GAGAGGAGTTTAACTTCATG+AGG 0.599961 7_3:-81053486 None:intergenic
TGGGGTGAAGCTGTGTATGG+TGG 0.601746 7_3:+81056376 Msa1129110:CDS
TGACGAAAGACAAATATGAC+AGG 0.607837 7_3:-81053546 None:intergenic
GTCTCTAGTTTGTACGTACG+TGG 0.608491 7_3:+81053292 Msa1129110:five_prime_UTR
ATTACTATCCAGCTGCAGGA+AGG 0.614273 7_3:+81053637 Msa1129110:CDS
GCGGAGGTCCCAACCAGAGT+TGG 0.615833 7_3:+81053443 Msa1129110:CDS
TGACAGGAAGATTGAAACGA+AGG 0.615959 7_3:-81053530 None:intergenic
TAAGACCTGTATGAGTCGAA+CGG 0.619194 7_3:-81053838 None:intergenic
GTGCATTGAGAAAGGTGAAG+TGG 0.620215 7_3:-81055977 None:intergenic
TCCGCCAAATACGTACATCA+AGG 0.620796 7_3:+81055877 Msa1129110:CDS
GCCTTCTTGATCATCTATGT+CGG 0.622425 7_3:-81053508 None:intergenic
GTAACCAAAATCATCCTACA+AGG 0.623110 7_3:+81056548 Msa1129110:CDS
TGGTTGCAAGTAACGTGTGG+CGG 0.626899 7_3:-81055833 None:intergenic
TTGAACCATACAATGGGCGA+TGG 0.631288 7_3:+81055704 Msa1129110:CDS
TGCTGGGCGAAAGTTGATGG+TGG 0.635555 7_3:+81053671 Msa1129110:CDS
CCTGTATGAGTCGAACGGGA+CGG 0.638129 7_3:-81053833 None:intergenic
GTGTGCAATAATGAAAAGGA+AGG 0.644525 7_3:+81056678 Msa1129110:three_prime_UTR
TCCGACATAGATGATCAAGA+AGG 0.646509 7_3:+81053507 Msa1129110:CDS
AAACCAACACAAGACGTGAA+CGG 0.648957 7_3:+81056957 Msa1129110:three_prime_UTR
AAACCTCTTCATATCTTCAG+GGG 0.652653 7_3:-81056500 None:intergenic
TATGGTGGAGCAGTAAAAGG+TGG 0.653295 7_3:+81056391 Msa1129110:CDS
CATGTTTAAGAACCTTAACA+GGG 0.656931 7_3:-81053593 None:intergenic
AGCTGCAGGAAGGATTAGGG+AGG 0.663235 7_3:+81053647 Msa1129110:CDS
AGAATGCAAAAGGAGAAGAA+GGG 0.663405 7_3:+81056455 Msa1129110:CDS
GTTACACGTCTCAAGTGTGG+TGG 0.666120 7_3:+81055662 Msa1129110:CDS
AACCTCTTCATATCTTCAGG+GGG 0.666136 7_3:-81056499 None:intergenic
CAGGTTACACGTCTCAAGTG+TGG 0.668116 7_3:+81055659 Msa1129110:intron
CGATGGTTGCAAGTAACGTG+TGG 0.669479 7_3:-81055836 None:intergenic
GTATTTGTTCGTATTCACGA+TGG 0.674672 7_3:-81055853 None:intergenic
CTTGATCATCTATGTCGGAG+AGG 0.675142 7_3:-81053503 None:intergenic
CACTATTGTTCACAGTGCGG+AGG 0.677341 7_3:+81053427 Msa1129110:CDS
GCATGGGCAGAAATGGCTCG+AGG 0.681407 7_3:+81055752 Msa1129110:CDS
GCTGCAGGAAGGATTAGGGA+GGG 0.683826 7_3:+81053648 Msa1129110:CDS
CACCACTATTGTTCACAGTG+CGG 0.732056 7_3:+81053424 Msa1129110:CDS
GTTGATGGTGGATTGCACTG+GGG 0.762765 7_3:+81053683 Msa1129110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATAGTTTTCTAAATTT+TGG - chr7_3:81054549-81054568 None:intergenic 10.0%
!! TGTAATTAATATAAATTCAT+AGG - chr7_3:81055138-81055157 None:intergenic 10.0%
!! TGATCAATAATTAAATTTCA+AGG - chr7_3:81053882-81053901 None:intergenic 15.0%
!!! AAACACATTATTTTTAATAG+CGG - chr7_3:81054209-81054228 None:intergenic 15.0%
!! TAAGTATAAAATGACATAAA+AGG + chr7_3:81054256-81054275 Msa1129110:intron 15.0%
!! AAAATTTGTCGAATAAAAAA+TGG - chr7_3:81054414-81054433 None:intergenic 15.0%
!!! TATATAATTTATTTGTTGTG+TGG - chr7_3:81054903-81054922 None:intergenic 15.0%
!! AAATAATTGCATTATATAAG+TGG - chr7_3:81055079-81055098 None:intergenic 15.0%
!! TGAATCATTTATATATCAAT+CGG - chr7_3:81056625-81056644 None:intergenic 15.0%
!! ATAAATAAATATGAAAAGCA+AGG + chr7_3:81056709-81056728 Msa1129110:three_prime_UTR 15.0%
!!! TTTGTGTCTTTTTTTTTAAT+GGG + chr7_3:81056919-81056938 Msa1129110:three_prime_UTR 15.0%
!!! AAACATCCTTGAAATTTTAT+AGG + chr7_3:81053907-81053926 Msa1129110:intron 20.0%
!!! AACACATTATTTTTAATAGC+GGG - chr7_3:81054208-81054227 None:intergenic 20.0%
!! GCTATTAAAAATAATGTGTT+TGG + chr7_3:81054208-81054227 Msa1129110:intron 20.0%
!! TCTTATATGAATTAAAAGCA+AGG + chr7_3:81054505-81054524 Msa1129110:intron 20.0%
!! TATCCCAAAAAATAAAATGA+GGG - chr7_3:81055297-81055316 None:intergenic 20.0%
!! TTATCCCAAAAAATAAAATG+AGG - chr7_3:81055298-81055317 None:intergenic 20.0%
!!! TACCATTTTTCGTAAAAAAT+TGG - chr7_3:81055324-81055343 None:intergenic 20.0%
!! ACTTAAAAATAGTGTAAAGT+TGG - chr7_3:81055352-81055371 None:intergenic 20.0%
!! TAACATATACATACATCTTT+AGG + chr7_3:81055607-81055626 Msa1129110:intron 20.0%
!! GATAATTAGAATTAAATGAC+AGG + chr7_3:81055640-81055659 Msa1129110:intron 20.0%
!! GAAAGATGTTTATTTACAAA+GGG + chr7_3:81056295-81056314 Msa1129110:CDS 20.0%
!!! CTTTGTGTCTTTTTTTTTAA+TGG + chr7_3:81056918-81056937 Msa1129110:three_prime_UTR 20.0%
! TCATGCTATCATAAAAAAGA+AGG - chr7_3:81053395-81053414 None:intergenic 25.0%
! GATATAACACTTGATCAATT+TGG + chr7_3:81053735-81053754 Msa1129110:CDS 25.0%
! TCAATAATATATTCTGATCC+TGG - chr7_3:81053813-81053832 None:intergenic 25.0%
! AAGAGACCTATAAAATTTCA+AGG - chr7_3:81053916-81053935 None:intergenic 25.0%
!! TGATCTCATTACAATCATTT+TGG - chr7_3:81053980-81053999 None:intergenic 25.0%
! AAAATGATTGTAATGAGATC+AGG + chr7_3:81053979-81053998 Msa1129110:intron 25.0%
! AAATGATTGTAATGAGATCA+GGG + chr7_3:81053980-81053999 Msa1129110:intron 25.0%
!! TATTCCAAGTCTAAAATTCA+GGG - chr7_3:81054046-81054065 None:intergenic 25.0%
!! TTATTCCAAGTCTAAAATTC+AGG - chr7_3:81054047-81054066 None:intergenic 25.0%
!! GAATTTTAGACTTGGAATAA+AGG + chr7_3:81054047-81054066 Msa1129110:intron 25.0%
!!! TTTTGGTGTTCACTTTTTTT+AGG - chr7_3:81054532-81054551 None:intergenic 25.0%
! TCGTTTGTATATATACACAT+AGG - chr7_3:81054873-81054892 None:intergenic 25.0%
!! ATTATCATGCATTAACTTGA+TGG - chr7_3:81055242-81055261 None:intergenic 25.0%
!!! TAATTTTCAAGCTTTCTAAC+CGG + chr7_3:81055258-81055277 Msa1129110:intron 25.0%
! ATCCCAAAAAATAAAATGAG+GGG - chr7_3:81055296-81055315 None:intergenic 25.0%
!!! AGCCAATTTTTTACGAAAAA+TGG + chr7_3:81055319-81055338 Msa1129110:intron 25.0%
!!! TATTAGTCTTTGAAGTTATC+GGG - chr7_3:81055392-81055411 None:intergenic 25.0%
!!! CTATTAGTCTTTGAAGTTAT+CGG - chr7_3:81055393-81055412 None:intergenic 25.0%
! TTTCACATTAAATATGCCTT+GGG - chr7_3:81055453-81055472 None:intergenic 25.0%
! ATTTCACATTAAATATGCCT+TGG - chr7_3:81055454-81055473 None:intergenic 25.0%
!!! TCAATGACATTAGTCTTTTT+AGG - chr7_3:81055564-81055583 None:intergenic 25.0%
! GGAAAGATGTTTATTTACAA+AGG + chr7_3:81056294-81056313 Msa1129110:CDS 25.0%
! AAGTTCTCAGAAGTAAATTT+CGG + chr7_3:81056352-81056371 Msa1129110:CDS 25.0%
!!! CAAGGTCTATTTTCTTATTT+GGG + chr7_3:81056727-81056746 Msa1129110:three_prime_UTR 25.0%
!!! AAGGTCTATTTTCTTATTTG+GGG + chr7_3:81056728-81056747 Msa1129110:three_prime_UTR 25.0%
! AACAAATGAGAAAAGATTAG+AGG - chr7_3:81056778-81056797 None:intergenic 25.0%
! GAATGAAAGAGAAAAAAGAA+AGG - chr7_3:81056889-81056908 None:intergenic 25.0%
!!! CTTTTTTCTCTTTCATTCTT+TGG + chr7_3:81056891-81056910 Msa1129110:three_prime_UTR 25.0%
!! ACAGGAATTTTGAAAAGTCA+TGG - chr7_3:81053269-81053288 None:intergenic 30.0%
CAACACTTCTTAACTCTATT+TGG + chr7_3:81053359-81053378 Msa1129110:five_prime_UTR 30.0%
GCTATCATAAAAAAGAAGGA+GGG - chr7_3:81053391-81053410 None:intergenic 30.0%
TGCTATCATAAAAAAGAAGG+AGG - chr7_3:81053392-81053411 None:intergenic 30.0%
CATGTTTAAGAACCTTAACA+GGG - chr7_3:81053596-81053615 None:intergenic 30.0%
ATAGAATTTCTTGGAAGCAA+GGG - chr7_3:81053782-81053801 None:intergenic 30.0%
TATAGAATTTCTTGGAAGCA+AGG - chr7_3:81053783-81053802 None:intergenic 30.0%
GAACATCGTATAGAATTTCT+TGG - chr7_3:81053791-81053810 None:intergenic 30.0%
! ATTCCAAGTCTAAAATTCAG+GGG - chr7_3:81054045-81054064 None:intergenic 30.0%
!!! ACATAGTTTTGTCTATCATG+AGG - chr7_3:81054073-81054092 None:intergenic 30.0%
!! AATAAACTGTGAGGTTTTAG+TGG + chr7_3:81054586-81054605 Msa1129110:intron 30.0%
! GAATTAGCTTATAAGCTTGT+TGG - chr7_3:81054810-81054829 None:intergenic 30.0%
ACTTTATGATGCTTACAACA+TGG + chr7_3:81054984-81055003 Msa1129110:intron 30.0%
CTTTATGATGCTTACAACAT+GGG + chr7_3:81054985-81055004 Msa1129110:intron 30.0%
CTAAAGCGAACTATAATATG+AGG - chr7_3:81055175-81055194 None:intergenic 30.0%
CTCATATTATAGTTCGCTTT+AGG + chr7_3:81055173-81055192 Msa1129110:intron 30.0%
!!! GACCCCTCATTTTATTTTTT+GGG + chr7_3:81055291-81055310 Msa1129110:intron 30.0%
!! TCAAAGACTAATAGCTTGTT+TGG + chr7_3:81055399-81055418 Msa1129110:intron 30.0%
!! TAATAGCTTGTTTGGAATAG+CGG + chr7_3:81055407-81055426 Msa1129110:intron 30.0%
ATCTTATCACTGCATGTTAT+TGG + chr7_3:81056008-81056027 Msa1129110:CDS 30.0%
TGGTAATTGTATTGCTTTCT+CGG + chr7_3:81056144-81056163 Msa1129110:CDS 30.0%
! GGCAGATTTTATGGTTATTA+AGG + chr7_3:81056273-81056292 Msa1129110:CDS 30.0%
AAAGAGCTAAATGATATGCT+TGG + chr7_3:81056526-81056545 Msa1129110:CDS 30.0%
ATCACAAGCTACAAACTATA+AGG - chr7_3:81056599-81056618 None:intergenic 30.0%
ATGTGTGTGCAATAATGAAA+AGG + chr7_3:81056674-81056693 Msa1129110:three_prime_UTR 30.0%
! GCAAGGTCTATTTTCTTATT+TGG + chr7_3:81056726-81056745 Msa1129110:three_prime_UTR 30.0%
!!! AGTTTGTTTTGTTGTGTCTT+TGG + chr7_3:81056830-81056849 Msa1129110:three_prime_UTR 30.0%
CAACAAAACAAAATTGTGCT+AGG + chr7_3:81056992-81057011 Msa1129110:three_prime_UTR 30.0%
!! GGAATTTTGAAAAGTCATGG+AGG - chr7_3:81053266-81053285 None:intergenic 35.0%
! TTGTTTGAGTGATAACGCTA+TGG - chr7_3:81053335-81053354 None:intergenic 35.0%
! AGTTTAACTTCATGAGGAGT+GGG - chr7_3:81053483-81053502 None:intergenic 35.0%
TGACGAAAGACAAATATGAC+AGG - chr7_3:81053549-81053568 None:intergenic 35.0%
GCATGTTTAAGAACCTTAAC+AGG - chr7_3:81053597-81053616 None:intergenic 35.0%
GAAATTCTATACGATGTTCC+AGG + chr7_3:81053792-81053811 Msa1129110:CDS 35.0%
GACAAAACTATGTCTCTGTT+TGG + chr7_3:81054080-81054099 Msa1129110:intron 35.0%
GGTAAAATTAGCTGTTGAAG+TGG + chr7_3:81054229-81054248 Msa1129110:intron 35.0%
ATATACACATAGGCTGTGTT+TGG - chr7_3:81054863-81054882 None:intergenic 35.0%
ACTTTGTCATGAAGCAAAGA+TGG + chr7_3:81054951-81054970 Msa1129110:intron 35.0%
GTGCATTGTAAAGTTGTATG+AGG - chr7_3:81055021-81055040 None:intergenic 35.0%
! AAGTGTTGTAAGTGTAGCAT+TGG - chr7_3:81055056-81055075 None:intergenic 35.0%
TTTAGGCCTTAGAATGTGTT+AGG + chr7_3:81055190-81055209 Msa1129110:intron 35.0%
!!! GGACCCCTCATTTTATTTTT+TGG + chr7_3:81055290-81055309 Msa1129110:intron 35.0%
TTGAGCTTGAACCATACAAT+GGG + chr7_3:81055698-81055717 Msa1129110:CDS 35.0%
CATTCAACCTGTATGGAATA+GGG + chr7_3:81055790-81055809 Msa1129110:CDS 35.0%
ATGGAATAGGGAGATTCTAA+TGG + chr7_3:81055802-81055821 Msa1129110:CDS 35.0%
GTATTTGTTCGTATTCACGA+TGG - chr7_3:81055856-81055875 None:intergenic 35.0%
TCTTCCTTGATGTACGTATT+TGG - chr7_3:81055884-81055903 None:intergenic 35.0%
CTGTGAAGAAGAAAGATTGA+TGG - chr7_3:81055925-81055944 None:intergenic 35.0%
AATATCCGACAAGCAACAAA+GGG - chr7_3:81056123-81056142 None:intergenic 35.0%
TAATATCCGACAAGCAACAA+AGG - chr7_3:81056124-81056143 None:intergenic 35.0%
! TTGTTGCTTGTCGGATATTA+TGG + chr7_3:81056124-81056143 Msa1129110:CDS 35.0%
ACTCAACTGCATAACCTAAT+GGG - chr7_3:81056204-81056223 None:intergenic 35.0%
AACTCAACTGCATAACCTAA+TGG - chr7_3:81056205-81056224 None:intergenic 35.0%
! GCATTCTTTGGCAGATTTTA+TGG + chr7_3:81056264-81056283 Msa1129110:CDS 35.0%
TACAAAGGGAAGAACTTGTA+TGG + chr7_3:81056309-81056328 Msa1129110:CDS 35.0%
TCTCAGAAGTAAATTTCGGA+TGG + chr7_3:81056356-81056375 Msa1129110:CDS 35.0%
CTCAGAAGTAAATTTCGGAT+GGG + chr7_3:81056357-81056376 Msa1129110:CDS 35.0%
TCAGAAGTAAATTTCGGATG+GGG + chr7_3:81056358-81056377 Msa1129110:CDS 35.0%
! TCTCCTTTTGCATTCTTATG+CGG - chr7_3:81056451-81056470 None:intergenic 35.0%
AAGAATGCAAAAGGAGAAGA+AGG + chr7_3:81056454-81056473 Msa1129110:CDS 35.0%
AGAATGCAAAAGGAGAAGAA+GGG + chr7_3:81056455-81056474 Msa1129110:CDS 35.0%
AAACCTCTTCATATCTTCAG+GGG - chr7_3:81056503-81056522 None:intergenic 35.0%
CAAACCTCTTCATATCTTCA+GGG - chr7_3:81056504-81056523 None:intergenic 35.0%
ACAAACCTCTTCATATCTTC+AGG - chr7_3:81056505-81056524 None:intergenic 35.0%
GTAACCAAAATCATCCTACA+AGG + chr7_3:81056548-81056567 Msa1129110:CDS 35.0%
AAGGTAGACAAGATGAAACT+AGG - chr7_3:81056580-81056599 None:intergenic 35.0%
GTGTGCAATAATGAAAAGGA+AGG + chr7_3:81056678-81056697 Msa1129110:three_prime_UTR 35.0%
!! CTATTTTCTTATTTGGGGTG+TGG + chr7_3:81056733-81056752 Msa1129110:three_prime_UTR 35.0%
!! TTTTGTTGTGTCTTTGGTCA+TGG + chr7_3:81056836-81056855 Msa1129110:three_prime_UTR 35.0%
GTACAAACTAGAGACGATAC+AGG - chr7_3:81053287-81053306 None:intergenic 40.0%
! GAGTTTAACTTCATGAGGAG+TGG - chr7_3:81053484-81053503 None:intergenic 40.0%
! GAGAGGAGTTTAACTTCATG+AGG - chr7_3:81053489-81053508 None:intergenic 40.0%
TCCGACATAGATGATCAAGA+AGG + chr7_3:81053507-81053526 Msa1129110:CDS 40.0%
GCCTTCTTGATCATCTATGT+CGG - chr7_3:81053511-81053530 None:intergenic 40.0%
TGACAGGAAGATTGAAACGA+AGG - chr7_3:81053533-81053552 None:intergenic 40.0%
GGGTCTTTCTCTTTCATTGA+TGG - chr7_3:81053576-81053595 None:intergenic 40.0%
GAAAGAGAAAGACCCTGTTA+AGG + chr7_3:81053581-81053600 Msa1129110:CDS 40.0%
GTTTATTACTATCCAGCTGC+AGG + chr7_3:81053633-81053652 Msa1129110:CDS 40.0%
TTTCTTGGAAGCAAGGGAAT+GGG - chr7_3:81053776-81053795 None:intergenic 40.0%
ATTTCTTGGAAGCAAGGGAA+TGG - chr7_3:81053777-81053796 None:intergenic 40.0%
TAAGACCTGTATGAGTCGAA+CGG - chr7_3:81053841-81053860 None:intergenic 40.0%
GATAGCTGATAGCTTATAGC+TGG + chr7_3:81054178-81054197 Msa1129110:intron 40.0%
GTTTATTGCAAGTCACGACA+TGG - chr7_3:81054573-81054592 None:intergenic 40.0%
! GTGACTTGCAATAAACTGTG+AGG + chr7_3:81054577-81054596 Msa1129110:intron 40.0%
GGATCAAAATGTGACGTGTT+TGG - chr7_3:81054789-81054808 None:intergenic 40.0%
! TGTTGTAAGTGTAGCATTGG+CGG - chr7_3:81055053-81055072 None:intergenic 40.0%
CTTTCCATCTCATTCAGTGT+CGG - chr7_3:81055216-81055235 None:intergenic 40.0%
CAAGTGTGGTGGTTTCATAA+TGG + chr7_3:81055673-81055692 Msa1129110:CDS 40.0%
CATTGTATGGTTCAAGCTCA+AGG - chr7_3:81055699-81055718 None:intergenic 40.0%
CTTGAGCTTGAACCATACAA+TGG + chr7_3:81055697-81055716 Msa1129110:CDS 40.0%
TGAGACAATTCTTGACTGCA+TGG + chr7_3:81055735-81055754 Msa1129110:CDS 40.0%
GAGACAATTCTTGACTGCAT+GGG + chr7_3:81055736-81055755 Msa1129110:CDS 40.0%
AACCTTCCATTCAACCTGTA+TGG + chr7_3:81055783-81055802 Msa1129110:CDS 40.0%
! TTCCATACAGGTTGAATGGA+AGG - chr7_3:81055788-81055807 None:intergenic 40.0%
! CCTATTCCATACAGGTTGAA+TGG - chr7_3:81055792-81055811 None:intergenic 40.0%
CCATTCAACCTGTATGGAAT+AGG + chr7_3:81055789-81055808 Msa1129110:CDS 40.0%
AGAATCTCCCTATTCCATAC+AGG - chr7_3:81055800-81055819 None:intergenic 40.0%
TCCTTGATGTACGTATTTGG+CGG - chr7_3:81055881-81055900 None:intergenic 40.0%
ATCATTCGTACCTCTTCATC+TGG - chr7_3:81056064-81056083 None:intergenic 40.0%
AGCAAAAGCTCAAGTTACAG+AGG + chr7_3:81056234-81056253 Msa1129110:CDS 40.0%
! AGAGGAGTACATGCATTCTT+TGG + chr7_3:81056252-81056271 Msa1129110:CDS 40.0%
! GAACTTGTATGGTGTCAGAT+TGG + chr7_3:81056320-81056339 Msa1129110:CDS 40.0%
! GTGGAGTTGGATCTTTTCTT+GGG + chr7_3:81056410-81056429 Msa1129110:CDS 40.0%
! TGGAGTTGGATCTTTTCTTG+GGG + chr7_3:81056411-81056430 Msa1129110:CDS 40.0%
ATTCTTATGCGGGACAAGAA+AGG - chr7_3:81056440-81056459 None:intergenic 40.0%
! CTCCTTTTGCATTCTTATGC+GGG - chr7_3:81056450-81056469 None:intergenic 40.0%
AACCTCTTCATATCTTCAGG+GGG - chr7_3:81056502-81056521 None:intergenic 40.0%
! CACTCCTTGTAGGATGATTT+TGG - chr7_3:81056555-81056574 None:intergenic 40.0%
! TTCTTATTTGGGGTGTGGAT+AGG + chr7_3:81056738-81056757 Msa1129110:three_prime_UTR 40.0%
! TCTTATTTGGGGTGTGGATA+GGG + chr7_3:81056739-81056758 Msa1129110:three_prime_UTR 40.0%
! TGTGTCTTTGGTCATGGTTT+TGG + chr7_3:81056842-81056861 Msa1129110:three_prime_UTR 40.0%
! GTGTCTTTGGTCATGGTTTT+GGG + chr7_3:81056843-81056862 Msa1129110:three_prime_UTR 40.0%
AAACCAACACAAGACGTGAA+CGG + chr7_3:81056957-81056976 Msa1129110:three_prime_UTR 40.0%
! GTCTCTAGTTTGTACGTACG+TGG + chr7_3:81053292-81053311 Msa1129110:five_prime_UTR 45.0%
CACCACTATTGTTCACAGTG+CGG + chr7_3:81053424-81053443 Msa1129110:CDS 45.0%
!! TGGAAGTACCAACTCTGGTT+GGG - chr7_3:81053454-81053473 None:intergenic 45.0%
CTTGATCATCTATGTCGGAG+AGG - chr7_3:81053506-81053525 None:intergenic 45.0%
ATTACTATCCAGCTGCAGGA+AGG + chr7_3:81053637-81053656 Msa1129110:CDS 45.0%
!! AAGTTGATGGTGGATTGCAC+TGG + chr7_3:81053681-81053700 Msa1129110:CDS 45.0%
!! AGTTGATGGTGGATTGCACT+GGG + chr7_3:81053682-81053701 Msa1129110:CDS 45.0%
TTCTTGGAAGCAAGGGAATG+GGG - chr7_3:81053775-81053794 None:intergenic 45.0%
AAGACCTGTATGAGTCGAAC+GGG - chr7_3:81053840-81053859 None:intergenic 45.0%
GATTGTAATGAGATCAGGGC+TGG + chr7_3:81053984-81054003 Msa1129110:intron 45.0%
! AGGCCCCTGAATTTTAGACT+TGG + chr7_3:81054039-81054058 Msa1129110:intron 45.0%
TGGCAGTAAGCCTTAAAACG+TGG + chr7_3:81054606-81054625 Msa1129110:intron 45.0%
GGCAGTAAGCCTTAAAACGT+GGG + chr7_3:81054607-81054626 Msa1129110:intron 45.0%
AGCCTTAAAACGTGGGAACA+TGG + chr7_3:81054614-81054633 Msa1129110:intron 45.0%
GCCTTAAAACGTGGGAACAT+GGG + chr7_3:81054615-81054634 Msa1129110:intron 45.0%
! ACCCATGTTCCCACGTTTTA+AGG - chr7_3:81054619-81054638 None:intergenic 45.0%
TTAAAACGTGGGAACATGGG+TGG + chr7_3:81054618-81054637 Msa1129110:intron 45.0%
TGTCGGCCTAACACATTCTA+AGG - chr7_3:81055199-81055218 None:intergenic 45.0%
AAGCTTTCTAACCGGTCCAA+CGG + chr7_3:81055266-81055285 Msa1129110:intron 45.0%
!! TTTGCATTTCTAGCGTCCCA+AGG + chr7_3:81055434-81055453 Msa1129110:intron 45.0%
CATTCACCGCTAAAACAGAC+AGG + chr7_3:81055523-81055542 Msa1129110:intron 45.0%
!! GTAGCTCCTGTCTGTTTTAG+CGG - chr7_3:81055532-81055551 None:intergenic 45.0%
TTGAACCATACAATGGGCGA+TGG + chr7_3:81055704-81055723 Msa1129110:CDS 45.0%
TCCGCCAAATACGTACATCA+AGG + chr7_3:81055877-81055896 Msa1129110:CDS 45.0%
GTGCATTGAGAAAGGTGAAG+TGG - chr7_3:81055980-81055999 None:intergenic 45.0%
CGTATGCAGTGCATTGAGAA+AGG - chr7_3:81055988-81056007 None:intergenic 45.0%
! GCTAACCCTTTGTTGCTTGT+CGG + chr7_3:81056115-81056134 Msa1129110:CDS 45.0%
! GAGCTTTGTGGAAACCCATT+AGG + chr7_3:81056187-81056206 Msa1129110:CDS 45.0%
! GTGTATGGTGGAGCAGTAAA+AGG + chr7_3:81056388-81056407 Msa1129110:CDS 45.0%
! TATGGTGGAGCAGTAAAAGG+TGG + chr7_3:81056391-81056410 Msa1129110:CDS 45.0%
! GGTGGAGTTGGATCTTTTCT+TGG + chr7_3:81056409-81056428 Msa1129110:CDS 45.0%
! GGAGTTGGATCTTTTCTTGG+GGG + chr7_3:81056412-81056431 Msa1129110:CDS 45.0%
GTCCCGCATAAGAATGCAAA+AGG + chr7_3:81056445-81056464 Msa1129110:CDS 45.0%
!! AAACTAGGAGCACTCCTTGT+AGG - chr7_3:81056565-81056584 None:intergenic 45.0%
!! ATAATAAAATTAAATTAACA+AGG + chr7_3:81054661-81054680 Msa1129110:intron 5.0%
CTCCGCACTGTGAACAATAG+TGG - chr7_3:81053429-81053448 None:intergenic 50.0%
CACTATTGTTCACAGTGCGG+AGG + chr7_3:81053427-81053446 Msa1129110:CDS 50.0%
!! CTGGAAGTACCAACTCTGGT+TGG - chr7_3:81053455-81053474 None:intergenic 50.0%
ATCCAGCTGCAGGAAGGATT+AGG + chr7_3:81053643-81053662 Msa1129110:CDS 50.0%
TCCAGCTGCAGGAAGGATTA+GGG + chr7_3:81053644-81053663 Msa1129110:CDS 50.0%
!! GTTGATGGTGGATTGCACTG+GGG + chr7_3:81053683-81053702 Msa1129110:CDS 50.0%
TCTTGGAAGCAAGGGAATGG+GGG - chr7_3:81053774-81053793 None:intergenic 50.0%
!! GTTTGGGTTGCCTTACCCTT+AGG - chr7_3:81054010-81054029 None:intergenic 50.0%
AATTCAGGGGCCTAAAGCGA+GGG - chr7_3:81054032-81054051 None:intergenic 50.0%
AAATTCAGGGGCCTAAAGCG+AGG - chr7_3:81054033-81054052 None:intergenic 50.0%
TAGGCCGACACTGAATGAGA+TGG + chr7_3:81055209-81055228 Msa1129110:intron 50.0%
TAAAATGAGGGGTCCACCGT+TGG - chr7_3:81055285-81055304 None:intergenic 50.0%
CAGGTTACACGTCTCAAGTG+TGG + chr7_3:81055659-81055678 Msa1129110:intron 50.0%
GTTACACGTCTCAAGTGTGG+TGG + chr7_3:81055662-81055681 Msa1129110:CDS 50.0%
CTTGACTGCATGGGCAGAAA+TGG + chr7_3:81055745-81055764 Msa1129110:CDS 50.0%
TGGTTGCAAGTAACGTGTGG+CGG - chr7_3:81055836-81055855 None:intergenic 50.0%
CGATGGTTGCAAGTAACGTG+TGG - chr7_3:81055839-81055858 None:intergenic 50.0%
GAGAAAGGTGAAGTGGAACC+AGG - chr7_3:81055973-81055992 None:intergenic 50.0%
! CCACCTGCAATGCTTTTGTG+CGG - chr7_3:81056039-81056058 None:intergenic 50.0%
GCATCGTTAATGCACGTTCG+AGG + chr7_3:81056086-81056105 Msa1129110:CDS 50.0%
ACCACTGCAAAGGAGCTTTG+TGG + chr7_3:81056175-81056194 Msa1129110:CDS 50.0%
TCCACAAAGCTCCTTTGCAG+TGG - chr7_3:81056179-81056198 None:intergenic 50.0%
GGAGCAGTAAAAGGTGGAGT+TGG + chr7_3:81056397-81056416 Msa1129110:CDS 50.0%
TCTTCAGGGGGCAAGCAAAT+TGG - chr7_3:81056490-81056509 None:intergenic 50.0%
TGCCCCCTGAAGATATGAAG+AGG + chr7_3:81056497-81056516 Msa1129110:CDS 50.0%
ACACCGTTCACGTCTTGTGT+TGG - chr7_3:81056963-81056982 None:intergenic 50.0%
AGACGTGAACGGTGTGTAAC+AGG + chr7_3:81056968-81056987 Msa1129110:three_prime_UTR 50.0%
GACGTGAACGGTGTGTAACA+GGG + chr7_3:81056969-81056988 Msa1129110:three_prime_UTR 50.0%
!! GCAGCTGGAAGTACCAACTC+TGG - chr7_3:81053459-81053478 None:intergenic 55.0%
TCCCTAATCCTTCCTGCAGC+TGG - chr7_3:81053648-81053667 None:intergenic 55.0%
AGCTGCAGGAAGGATTAGGG+AGG + chr7_3:81053647-81053666 Msa1129110:CDS 55.0%
GCTGCAGGAAGGATTAGGGA+GGG + chr7_3:81053648-81053667 Msa1129110:CDS 55.0%
!! GAAGGATTAGGGAGGGTGCT+GGG + chr7_3:81053655-81053674 Msa1129110:CDS 55.0%
!! TGCTGGGCGAAAGTTGATGG+TGG + chr7_3:81053671-81053690 Msa1129110:CDS 55.0%
!! ATGGTGGATTGCACTGGGGA+GGG + chr7_3:81053687-81053706 Msa1129110:CDS 55.0%
CCTGTATGAGTCGAACGGGA+CGG - chr7_3:81053836-81053855 None:intergenic 55.0%
!! ATGAGATCAGGGCTGGCCTA+AGG + chr7_3:81053991-81054010 Msa1129110:intron 55.0%
!! TGAGATCAGGGCTGGCCTAA+GGG + chr7_3:81053992-81054011 Msa1129110:intron 55.0%
GCAACCCAAACCCTCGCTTT+AGG + chr7_3:81054019-81054038 Msa1129110:intron 55.0%
CTTTCTAACCGGTCCAACGG+TGG + chr7_3:81055269-81055288 Msa1129110:intron 55.0%
CAGCTCCATCGCCCATTGTA+TGG - chr7_3:81055712-81055731 None:intergenic 55.0%
CATACAATGGGCGATGGAGC+TGG + chr7_3:81055710-81055729 Msa1129110:CDS 55.0%
GGTTGCAAGTAACGTGTGGC+GGG - chr7_3:81055835-81055854 None:intergenic 55.0%
!! CTGCCGCACAAAAGCATTGC+AGG + chr7_3:81056033-81056052 Msa1129110:CDS 55.0%
!! CCGCACAAAAGCATTGCAGG+TGG + chr7_3:81056036-81056055 Msa1129110:CDS 55.0%
GGATGGGGTGAAGCTGTGTA+TGG + chr7_3:81056373-81056392 Msa1129110:CDS 55.0%
TGGGGTGAAGCTGTGTATGG+TGG + chr7_3:81056376-81056395 Msa1129110:CDS 55.0%
TGGGGTGTGGATAGGGTTGA+TGG + chr7_3:81056746-81056765 Msa1129110:three_prime_UTR 55.0%
! GGGGTGTGGATAGGGTTGAT+GGG + chr7_3:81056747-81056766 Msa1129110:three_prime_UTR 55.0%
!! GGGTGTGGATAGGGTTGATG+GGG + chr7_3:81056748-81056767 Msa1129110:three_prime_UTR 55.0%
!! GGTGTGGATAGGGTTGATGG+GGG + chr7_3:81056749-81056768 Msa1129110:three_prime_UTR 55.0%
TCATGAGGAGTGGGTGCAGC+TGG - chr7_3:81053474-81053493 None:intergenic 60.0%
! GGAAGGATTAGGGAGGGTGC+TGG + chr7_3:81053654-81053673 Msa1129110:CDS 60.0%
!! GGGTGCTGGGCGAAAGTTGA+TGG + chr7_3:81053668-81053687 Msa1129110:CDS 60.0%
!! GATGGTGGATTGCACTGGGG+AGG + chr7_3:81053686-81053705 Msa1129110:CDS 60.0%
CCGTCCCGTTCGACTCATAC+AGG + chr7_3:81053833-81053852 Msa1129110:CDS 60.0%
!! TCAGGGCTGGCCTAAGGGTA+AGG + chr7_3:81053997-81054016 Msa1129110:intron 60.0%
GGGGCCTAAAGCGAGGGTTT+GGG - chr7_3:81054026-81054045 None:intergenic 60.0%
AGGGGCCTAAAGCGAGGGTT+TGG - chr7_3:81054027-81054046 None:intergenic 60.0%
GCATGGGCAGAAATGGCTCG+AGG + chr7_3:81055752-81055771 Msa1129110:CDS 60.0%
TGGAACCAGGCGACGAATCG+CGG - chr7_3:81055960-81055979 None:intergenic 60.0%
GCAGGTGGAGCCAGATGAAG+AGG + chr7_3:81056051-81056070 Msa1129110:CDS 60.0%
GGCAGCAGTCACCACTGCAA+AGG + chr7_3:81056165-81056184 Msa1129110:CDS 60.0%
GCGGAGGTCCCAACCAGAGT+TGG + chr7_3:81053443-81053462 Msa1129110:CDS 65.0%
TGAGGGGTCCACCGTTGGAC+CGG - chr7_3:81055280-81055299 None:intergenic 65.0%
CATAGCCGCGATTCGTCGCC+TGG + chr7_3:81055952-81055971 Msa1129110:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 81053240 81057027 81053240 ID=Msa1129110;Name=Msa1129110
chr7_3 mRNA 81053240 81057027 81053240 ID=Msa1129110-mRNA-1;Parent=Msa1129110;Name=Msa1129110-mRNA-1;_AED=0.01;_eAED=0.01;_QI=171|1|1|1|1|1|2|424|461
chr7_3 exon 81053240 81053854 81053240 ID=Msa1129110-mRNA-1:exon:23433;Parent=Msa1129110-mRNA-1
chr7_3 exon 81055662 81057027 81055662 ID=Msa1129110-mRNA-1:exon:23434;Parent=Msa1129110-mRNA-1
chr7_3 five_prime_UTR 81053240 81053410 81053240 ID=Msa1129110-mRNA-1:five_prime_utr;Parent=Msa1129110-mRNA-1
chr7_3 CDS 81053411 81053854 81053411 ID=Msa1129110-mRNA-1:cds;Parent=Msa1129110-mRNA-1
chr7_3 CDS 81055662 81056603 81055662 ID=Msa1129110-mRNA-1:cds;Parent=Msa1129110-mRNA-1
chr7_3 three_prime_UTR 81056604 81057027 81056604 ID=Msa1129110-mRNA-1:three_prime_utr;Parent=Msa1129110-mRNA-1
Gene Sequence

>Msa1129110

ATGACTTCTTCATCACCACTATTGTTCACAGTGCGGAGGTCCCAACCAGAGTTGGTACTTCCAGCTGCACCCACTCCTCATGAAGTTAAACTCCTCTCCGACATAGATGATCAAGAAGGCCTTCGTTTCAATCTTCCTGTCATATTTGTCTTTCGTCATGAACCATCAATGAAAGAGAAAGACCCTGTTAAGGTTCTTAAACATGCACTCTCACAAACACTTGTTTATTACTATCCAGCTGCAGGAAGGATTAGGGAGGGTGCTGGGCGAAAGTTGATGGTGGATTGCACTGGGGAGGGTGTCATGTTCATTGAAGCTGAAGCTGATATAACACTTGATCAATTTGGTGATGCTCTGCAACCCCCATTCCCTTGCTTCCAAGAAATTCTATACGATGTTCCAGGATCAGAATATATTATTGACCGTCCCGTTCGACTCATACAGGTTACACGTCTCAAGTGTGGTGGTTTCATAATGGCCTTGAGCTTGAACCATACAATGGGCGATGGAGCTGGTTTGAGACAATTCTTGACTGCATGGGCAGAAATGGCTCGAGGAGCAAATCAACCTTCCATTCAACCTGTATGGAATAGGGAGATTCTAATGGCAAGAGACCCGCCACACGTTACTTGCAACCATCGTGAATACGAACAAATACTTCCGCCAAATACGTACATCAAGGAAGAAGATACTACTATTGTAGTCCATCAATCTTTCTTCTTCACAGCTGCTCACATAGCCGCGATTCGTCGCCTGGTTCCACTTCACCTTTCTCAATGCACTGCATACGATCTTATCACTGCATGTTATTGGTGCTGCCGCACAAAAGCATTGCAGGTGGAGCCAGATGAAGAGGTACGAATGATGTGCATCGTTAATGCACGTTCGAGGTTTAGTGCTAACCCTTTGTTGCTTGTCGGATATTATGGTAATTGTATTGCTTTCTCGGCAGCAGTCACCACTGCAAAGGAGCTTTGTGGAAACCCATTAGGTTATGCAGTTGAGTTGATAAGAAAAGCAAAAGCTCAAGTTACAGAGGAGTACATGCATTCTTTGGCAGATTTTATGGTTATTAAGGAAAGATGTTTATTTACAAAGGGAAGAACTTGTATGGTGTCAGATTGGACTCGTGCTAAGTTCTCAGAAGTAAATTTCGGATGGGGTGAAGCTGTGTATGGTGGAGCAGTAAAAGGTGGAGTTGGATCTTTTCTTGGGGGAACCTTTCTTGTCCCGCATAAGAATGCAAAAGGAGAAGAAGGGTTAATATTACCAATTTGCTTGCCCCCTGAAGATATGAAGAGGTTTGTTAAAGAGCTAAATGATATGCTTGGTAACCAAAATCATCCTACAAGGAGTGCTCCTAGTTTCATCTTGTCTACCTTATAG
Protein sequence

>Msa1129110

MTSSSPLLFTVRRSQPELVLPAAPTPHEVKLLSDIDDQEGLRFNLPVIFVFRHEPSMKEKDPVKVLKHALSQTLVYYYPAAGRIREGAGRKLMVDCTGEGVMFIEAEADITLDQFGDALQPPFPCFQEILYDVPGSEYIIDRPVRLIQVTRLKCGGFIMALSLNHTMGDGAGLRQFLTAWAEMARGANQPSIQPVWNREILMARDPPHVTCNHREYEQILPPNTYIKEEDTTIVVHQSFFFTAAHIAAIRRLVPLHLSQCTAYDLITACYWCCRTKALQVEPDEEVRMMCIVNARSRFSANPLLLVGYYGNCIAFSAAVTTAKELCGNPLGYAVELIRKAKAQVTEEYMHSLADFMVIKERCLFTKGRTCMVSDWTRAKFSEVNFGWGEAVYGGAVKGGVGSFLGGTFLVPHKNAKGEEGLILPICLPPEDMKRFVKELNDMLGNQNHPTRSAPSFILSTL*