Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1040310 | XP_003626125.1 | 95.070 | 426 | 13 | 3 | 1 | 425 | 1 | 419 | 0.0 | 840 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1040310 | sp|Q9SFF6|PAE12_ARATH | 69.660 | 412 | 123 | 2 | 13 | 424 | 5 | 414 | 0.0 | 619 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1040310 | Q2HRU2 | 95.070 | 426 | 13 | 3 | 1 | 425 | 1 | 419 | 0.0 | 840 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1003740 | Msa1040310 | 0.801420 | 9.079066e-49 | -8.615850e-47 |
| Msa1003800 | Msa1040310 | 0.808604 | 2.854355e-50 | -8.615850e-47 |
| Msa1003930 | Msa1040310 | 0.800844 | 1.190888e-48 | -8.615850e-47 |
| Msa1040310 | Msa1083080 | 0.943313 | 1.507486e-102 | -8.615850e-47 |
| Msa1040310 | Msa1127960 | 0.936353 | 1.989615e-97 | -8.615850e-47 |
| Msa1040310 | Msa1351780 | 0.913616 | 5.007548e-84 | -8.615850e-47 |
| Msa0483910 | Msa1040310 | 0.812159 | 4.878709e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1040310 | MtrunA17_Chr7g0271231 | 95.070 | 426 | 13 | 3 | 1 | 425 | 1 | 419 | 0.0 | 840 |
| Msa1040310 | MtrunA17_Chr1g0193381 | 75.943 | 424 | 93 | 3 | 1 | 424 | 1 | 415 | 0.0 | 671 |
| Msa1040310 | MtrunA17_Chr7g0270931 | 71.662 | 367 | 104 | 0 | 59 | 425 | 49 | 415 | 0.0 | 592 |
| Msa1040310 | MtrunA17_Chr1g0193761 | 69.430 | 386 | 116 | 1 | 41 | 424 | 17 | 402 | 0.0 | 584 |
| Msa1040310 | MtrunA17_Chr4g0069571 | 71.622 | 370 | 105 | 0 | 56 | 425 | 52 | 421 | 0.0 | 582 |
| Msa1040310 | MtrunA17_Chr5g0408881 | 54.144 | 362 | 164 | 1 | 62 | 421 | 29 | 390 | 4.49e-151 | 435 |
| Msa1040310 | MtrunA17_Chr8g0369681 | 51.733 | 375 | 177 | 2 | 52 | 424 | 19 | 391 | 2.29e-148 | 427 |
| Msa1040310 | MtrunA17_Chr8g0369651 | 51.771 | 367 | 175 | 1 | 60 | 424 | 26 | 392 | 2.94e-146 | 421 |
| Msa1040310 | MtrunA17_Chr1g0203101 | 53.930 | 369 | 165 | 3 | 60 | 423 | 37 | 405 | 6.55e-145 | 419 |
| Msa1040310 | MtrunA17_Chr1g0203121 | 53.659 | 369 | 166 | 3 | 60 | 423 | 37 | 405 | 1.44e-142 | 413 |
| Msa1040310 | MtrunA17_Chr7g0238491 | 50.802 | 374 | 172 | 4 | 61 | 425 | 56 | 426 | 2.70e-139 | 405 |
| Msa1040310 | MtrunA17_Chr5g0418101 | 50.276 | 362 | 174 | 2 | 61 | 420 | 41 | 398 | 5.76e-137 | 398 |
| Msa1040310 | MtrunA17_Chr1g0163701 | 57.843 | 102 | 43 | 0 | 243 | 344 | 271 | 372 | 9.96e-34 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1040310 | AT3G05910.1 | 69.660 | 412 | 123 | 2 | 13 | 424 | 5 | 414 | 0.0 | 619 |
| Msa1040310 | AT5G26670.1 | 68.471 | 425 | 123 | 3 | 1 | 424 | 1 | 415 | 0.0 | 610 |
| Msa1040310 | AT1G57590.1 | 73.352 | 364 | 97 | 0 | 61 | 424 | 79 | 442 | 0.0 | 590 |
| Msa1040310 | AT3G62060.2 | 61.916 | 428 | 142 | 4 | 4 | 424 | 5 | 418 | 0.0 | 567 |
| Msa1040310 | AT3G62060.1 | 61.916 | 428 | 142 | 4 | 4 | 424 | 5 | 418 | 0.0 | 566 |
| Msa1040310 | AT2G46930.1 | 60.520 | 423 | 151 | 3 | 2 | 424 | 9 | 415 | 0.0 | 556 |
| Msa1040310 | AT5G26670.3 | 72.391 | 297 | 82 | 0 | 128 | 424 | 1 | 297 | 2.76e-169 | 476 |
| Msa1040310 | AT5G26670.2 | 72.391 | 297 | 82 | 0 | 128 | 424 | 1 | 297 | 2.76e-169 | 476 |
| Msa1040310 | AT5G26670.4 | 72.391 | 297 | 82 | 0 | 128 | 424 | 1 | 297 | 2.76e-169 | 476 |
| Msa1040310 | AT1G09550.1 | 59.128 | 367 | 146 | 2 | 40 | 403 | 17 | 382 | 3.49e-163 | 464 |
| Msa1040310 | AT4G19420.1 | 54.377 | 377 | 170 | 1 | 51 | 425 | 14 | 390 | 4.13e-156 | 447 |
| Msa1040310 | AT4G19420.2 | 54.377 | 377 | 170 | 1 | 51 | 425 | 14 | 390 | 4.13e-156 | 447 |
| Msa1040310 | AT5G23870.1 | 54.076 | 368 | 163 | 4 | 62 | 423 | 35 | 402 | 5.43e-150 | 432 |
| Msa1040310 | AT5G23870.4 | 54.076 | 368 | 163 | 4 | 62 | 423 | 35 | 402 | 5.43e-150 | 432 |
| Msa1040310 | AT5G23870.2 | 54.076 | 368 | 163 | 4 | 62 | 423 | 35 | 402 | 7.99e-150 | 432 |
| Msa1040310 | AT5G23870.3 | 54.076 | 368 | 163 | 4 | 62 | 423 | 35 | 402 | 1.20e-149 | 432 |
| Msa1040310 | AT4G19420.4 | 50.000 | 412 | 169 | 2 | 51 | 425 | 14 | 425 | 1.24e-149 | 432 |
| Msa1040310 | AT3G05910.2 | 67.105 | 304 | 98 | 2 | 13 | 316 | 5 | 306 | 1.00e-148 | 425 |
| Msa1040310 | AT3G09410.1 | 52.174 | 368 | 173 | 1 | 61 | 425 | 60 | 427 | 1.21e-143 | 416 |
| Msa1040310 | AT5G45280.2 | 49.307 | 361 | 180 | 2 | 62 | 419 | 24 | 384 | 4.80e-135 | 393 |
| Msa1040310 | AT3G09405.1 | 45.368 | 421 | 203 | 4 | 2 | 419 | 13 | 409 | 7.06e-135 | 393 |
| Msa1040310 | AT4G19410.1 | 49.030 | 361 | 181 | 2 | 62 | 419 | 24 | 384 | 1.51e-134 | 392 |
| Msa1040310 | AT4G19410.2 | 49.128 | 344 | 173 | 1 | 62 | 403 | 24 | 367 | 1.56e-127 | 379 |
| Msa1040310 | AT3G09410.3 | 51.796 | 334 | 158 | 1 | 61 | 391 | 60 | 393 | 1.49e-125 | 369 |
| Msa1040310 | AT5G45280.1 | 52.128 | 282 | 133 | 1 | 62 | 341 | 24 | 305 | 4.11e-109 | 326 |
| Msa1040310 | AT3G09405.2 | 49.175 | 303 | 149 | 2 | 120 | 419 | 2 | 302 | 3.38e-108 | 322 |
| Msa1040310 | AT4G19420.3 | 56.522 | 230 | 98 | 1 | 51 | 278 | 14 | 243 | 2.83e-90 | 276 |
Find 115 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTATCACCAACTTGGTTTA+TGG | 0.071657 | 7_1:-77650618 | Msa1040310:CDS |
| AATTCAGAGGACAGCGAATT+TGG | 0.187648 | 7_1:-77649395 | Msa1040310:CDS |
| GCTAATCAGGCTCTTCTTTC+CGG | 0.191020 | 7_1:-77649330 | Msa1040310:CDS |
| ATACATCACCTTGCAGAAAT+TGG | 0.207626 | 7_1:+77648279 | None:intergenic |
| CAGACAATTCTCCGGTTATT+AGG | 0.224305 | 7_1:-77647805 | Msa1040310:CDS |
| ATCTTTATAATCAAGCTAAA+AGG | 0.236684 | 7_1:+77647274 | None:intergenic |
| AATGGAAGATTTGATGTTAA+AGG | 0.242008 | 7_1:-77649364 | Msa1040310:CDS |
| TGTGATGGTGGCTCATTTAC+TGG | 0.246928 | 7_1:-77649781 | Msa1040310:CDS |
| TACCATTTGCATCGTGGATA+TGG | 0.251407 | 7_1:-77650330 | Msa1040310:CDS |
| TTGGTTTATGGGTTTGAATT+AGG | 0.260228 | 7_1:-77650606 | Msa1040310:CDS |
| TATGGGTTTGAATTAGGATA+TGG | 0.270691 | 7_1:-77650600 | Msa1040310:CDS |
| TTGATTGTCATCGGTGAAAT+TGG | 0.280151 | 7_1:-77647418 | Msa1040310:three_prime_UTR |
| TTATCACCAACTTGGTTTAT+GGG | 0.298292 | 7_1:-77650617 | Msa1040310:CDS |
| TCAATACTGCTTATGATTCA+TGG | 0.299224 | 7_1:-77648638 | Msa1040310:CDS |
| TGAAGAACTCTTTCTGTTAG+AGG | 0.300195 | 7_1:-77650547 | Msa1040310:CDS |
| CAGTTGGCTTGTTAATTTAG+AGG | 0.330535 | 7_1:-77650295 | Msa1040310:intron |
| AATTATAGGATTGATATATC+TGG | 0.336116 | 7_1:-77649088 | Msa1040310:intron |
| TAGCAGCTGCATTGTGGATA+AGG | 0.344441 | 7_1:+77650463 | None:intergenic |
| ATGGAAGATTTGATGTTAAA+GGG | 0.348581 | 7_1:-77649363 | Msa1040310:CDS |
| CACTTCACTTTAGTAGTCCT+TGG | 0.363666 | 7_1:+77649249 | None:intergenic |
| TATGATGTTAAGGAACAAAA+AGG | 0.371526 | 7_1:+77647359 | None:intergenic |
| CCTTGCAGAAATTGGATTTG+TGG | 0.382065 | 7_1:+77648287 | None:intergenic |
| TTCACCTTGTTCCTAATAAC+CGG | 0.384001 | 7_1:+77647794 | None:intergenic |
| TGATAATACATGTCACCATT+TGG | 0.393033 | 7_1:-77647547 | Msa1040310:CDS |
| CAGCAGATCCCCATGGCTAT+TGG | 0.396660 | 7_1:-77648346 | Msa1040310:CDS |
| CTTCTTTCCGGATGTTCAGC+GGG | 0.402249 | 7_1:-77649318 | Msa1040310:CDS |
| ATTCAGAGGACAGCGAATTT+GGG | 0.404061 | 7_1:-77649394 | Msa1040310:CDS |
| AATATGTACAGTGGCGTTGT+AGG | 0.405564 | 7_1:-77649049 | Msa1040310:CDS |
| TTACTAAGTATTCCTGTGAA+TGG | 0.407702 | 7_1:+77649963 | None:intergenic |
| CAACGCCACTGTACATATTC+CGG | 0.412894 | 7_1:+77649053 | None:intergenic |
| ATGTATCTTGCCTCTCGGTT+TGG | 0.417685 | 7_1:+77647834 | None:intergenic |
| AGCAGCTGCATTGTGGATAA+GGG | 0.417871 | 7_1:+77650464 | None:intergenic |
| GCATCCTTTCTTGAGGGTAA+TGG | 0.436523 | 7_1:-77650510 | Msa1040310:CDS |
| TAGGTAATTGCTTTAGCTGT+TGG | 0.437321 | 7_1:-77647624 | Msa1040310:CDS |
| GCTGCATACTTATGATGTTA+AGG | 0.437924 | 7_1:+77647349 | None:intergenic |
| TAGGCCACCCGCTGAACATC+CGG | 0.448568 | 7_1:+77649311 | None:intergenic |
| GCGAATTTGGGCAGCTGCAA+TGG | 0.455500 | 7_1:-77649382 | Msa1040310:CDS |
| TACTGGAGATGGTGAAGATC+AGG | 0.456973 | 7_1:-77649764 | Msa1040310:intron |
| TTTCTTGCAGTGTGCTTGGA+TGG | 0.462046 | 7_1:-77650366 | Msa1040310:intron |
| TTGCTTTAGCTGTTGGAGAC+TGG | 0.466598 | 7_1:-77647617 | Msa1040310:CDS |
| AATAAACCTGAAGAAAATCC+AGG | 0.477981 | 7_1:-77649942 | Msa1040310:intron |
| ATCCACAATGCAGCTGCTAA+AGG | 0.480879 | 7_1:-77650459 | Msa1040310:CDS |
| GTGAAGTGTCTTAGCGATGC+AGG | 0.481043 | 7_1:-77649234 | Msa1040310:CDS |
| ATTTCCATTACCCTCAAGAA+AGG | 0.487996 | 7_1:+77650506 | None:intergenic |
| TAACTTGATTTGATTGTCAT+CGG | 0.489011 | 7_1:-77647427 | Msa1040310:three_prime_UTR |
| TTCTCAAGATCAAACAAGAA+TGG | 0.489491 | 7_1:-77647887 | Msa1040310:CDS |
| GTCTCTTGAATACAGGGTTC+AGG | 0.491874 | 7_1:-77647937 | Msa1040310:intron |
| TCTTTATAATCAAGCTAAAA+GGG | 0.494899 | 7_1:+77647275 | None:intergenic |
| TTGCATCGTGGATATGGATC+AGG | 0.495342 | 7_1:-77650324 | Msa1040310:CDS |
| AATTTCGAGGTCTCTTTCCA+AGG | 0.497114 | 7_1:-77649266 | Msa1040310:CDS |
| ATCATCATTATACATGGAAA+AGG | 0.501178 | 7_1:-77649991 | Msa1040310:CDS |
| TGGCTCAACTGAAAACCAAA+TGG | 0.503838 | 7_1:+77647532 | None:intergenic |
| CTCCTTTAGCAGCTGCATTG+TGG | 0.510189 | 7_1:+77650457 | None:intergenic |
| TGCATTCATGCCAATAGCCA+TGG | 0.510756 | 7_1:+77648336 | None:intergenic |
| TGATGATCATGTATGAACTT+TGG | 0.511293 | 7_1:+77647512 | None:intergenic |
| CAGTGGCGTTGTAGGGATGC+AGG | 0.512225 | 7_1:-77649041 | Msa1040310:intron |
| ATCCATATCCACGATGCAAA+TGG | 0.517887 | 7_1:+77650328 | None:intergenic |
| AGAATACTCTGTCAGGGAGG+TGG | 0.518169 | 7_1:-77650065 | Msa1040310:intron |
| CATGCAGCATCCTTTCTTGA+GGG | 0.518276 | 7_1:-77650516 | Msa1040310:CDS |
| ATACACTGTGATGAATTTCG+AGG | 0.519543 | 7_1:-77649279 | Msa1040310:CDS |
| ACCCAGAAAAGTTTAGCCAT+TGG | 0.528435 | 7_1:+77650660 | None:intergenic |
| TAGCCATGGGGATCTGCTGA+TGG | 0.530490 | 7_1:+77648350 | None:intergenic |
| AGAACTTGTTATCACCAACT+TGG | 0.533797 | 7_1:-77650625 | Msa1040310:CDS |
| ATATGTACAGTGGCGTTGTA+GGG | 0.535571 | 7_1:-77649048 | Msa1040310:CDS |
| TCATACATGATCATCATCAA+TGG | 0.539075 | 7_1:-77647505 | Msa1040310:three_prime_UTR |
| CCACGATGCAAATGGTAACC+AGG | 0.545374 | 7_1:+77650336 | None:intergenic |
| GCATTCATGCCAATAGCCAT+GGG | 0.548266 | 7_1:+77648337 | None:intergenic |
| GTAAAGCTTCGTTATTGTGA+TGG | 0.550885 | 7_1:-77649796 | Msa1040310:CDS |
| TGCTTGGATGGAACATTACC+TGG | 0.558834 | 7_1:-77650354 | Msa1040310:CDS |
| TTCAAACCCATAAACCAAGT+TGG | 0.559248 | 7_1:+77650611 | None:intergenic |
| AATGCAGCTGCTAAAGGAGC+AGG | 0.563358 | 7_1:-77650453 | Msa1040310:intron |
| AAACCGAGAGGCAAGATACA+TGG | 0.565165 | 7_1:-77647832 | Msa1040310:CDS |
| GCGTGGATCATCATTATACA+TGG | 0.565339 | 7_1:-77649997 | Msa1040310:CDS |
| TACTGCTTATGATTCATGGC+AGG | 0.565480 | 7_1:-77648634 | Msa1040310:intron |
| TCTTCTTTCCGGATGTTCAG+CGG | 0.565522 | 7_1:-77649319 | Msa1040310:CDS |
| GTGGCCTTGTGCATTTAGCA+TGG | 0.567737 | 7_1:+77648306 | None:intergenic |
| GTGTTTATCGCAAGAAAACA+CGG | 0.570483 | 7_1:-77650019 | Msa1040310:CDS |
| AGAAACATTGTCATCGCCAA+TGG | 0.576057 | 7_1:-77650676 | Msa1040310:exon |
| ACATGCAGCATCCTTTCTTG+AGG | 0.576567 | 7_1:-77650517 | Msa1040310:CDS |
| CACAGTGTATAATAGTAGCT+AGG | 0.579094 | 7_1:+77649292 | None:intergenic |
| GGTGGCTCATTTACTGGAGA+TGG | 0.581728 | 7_1:-77649775 | Msa1040310:CDS |
| ACACTGGCAATCAAATTCTG+AGG | 0.583315 | 7_1:+77648681 | None:intergenic |
| ATGATTATGATTACCGAGGT+AGG | 0.584023 | 7_1:+77648846 | None:intergenic |
| CATGTATTATCACAAGGGTA+AGG | 0.587582 | 7_1:+77647558 | None:intergenic |
| ATGGATCAGGAGCAAACAGT+TGG | 0.589134 | 7_1:-77650311 | Msa1040310:CDS |
| TTCACTATTTGGGAATGCTG+AGG | 0.589472 | 7_1:-77647387 | Msa1040310:three_prime_UTR |
| CACTGGCAATCAAATTCTGA+GGG | 0.591267 | 7_1:+77648682 | None:intergenic |
| CTTTCCGGATGTTCAGCGGG+TGG | 0.596559 | 7_1:-77649315 | Msa1040310:CDS |
| GAAAAGGAGATACCATTCAC+AGG | 0.596897 | 7_1:-77649975 | Msa1040310:CDS |
| AAACCATGTATCTTGCCTCT+CGG | 0.596928 | 7_1:+77647829 | None:intergenic |
| AAGCTTCGTTATTGTGATGG+TGG | 0.600562 | 7_1:-77649793 | Msa1040310:CDS |
| CGCCACTGTACATATTCCGG+AGG | 0.603875 | 7_1:+77649056 | None:intergenic |
| CATCATAAGTATGCAGCCGT+AGG | 0.608287 | 7_1:-77647343 | Msa1040310:three_prime_UTR |
| TGGTGACATGTATTATCACA+AGG | 0.608610 | 7_1:+77647552 | None:intergenic |
| TGAAGTGTCTTAGCGATGCA+GGG | 0.608865 | 7_1:-77649233 | Msa1040310:CDS |
| CCTGGTTACCATTTGCATCG+TGG | 0.609738 | 7_1:-77650336 | Msa1040310:CDS |
| TGATTACCGAGGTAGGATCA+AGG | 0.612410 | 7_1:+77648853 | None:intergenic |
| CCATGGGGATCTGCTGATGG+AGG | 0.617825 | 7_1:+77648353 | None:intergenic |
| TACTCTGTCAGGGAGGTGGA+TGG | 0.618859 | 7_1:-77650061 | Msa1040310:intron |
| AGGGTGAGTCCTACGAGCAG+AGG | 0.626989 | 7_1:+77650483 | None:intergenic |
| TTCTCCGGTTATTAGGAACA+AGG | 0.636482 | 7_1:-77647798 | Msa1040310:intron |
| AATGGAAATCCTCTGCTCGT+AGG | 0.640827 | 7_1:-77650492 | Msa1040310:CDS |
| CCTCCATCAGCAGATCCCCA+TGG | 0.647413 | 7_1:-77648353 | Msa1040310:CDS |
| CCACAAATCCAATTTCTGCA+AGG | 0.649408 | 7_1:-77648287 | Msa1040310:intron |
| TACATGATCATCATCAATGG+AGG | 0.650394 | 7_1:-77647502 | Msa1040310:three_prime_UTR |
| TAATCACCTTGATCCTACCT+CGG | 0.661838 | 7_1:-77648859 | Msa1040310:intron |
| GAAGCAGAACTGCAATTCAG+AGG | 0.664323 | 7_1:-77649408 | Msa1040310:CDS |
| TATCGCAAGAAAACACGGCG+TGG | 0.683797 | 7_1:-77650014 | Msa1040310:CDS |
| AGGTGATTAGTACAAATCTG+TGG | 0.684849 | 7_1:+77648873 | None:intergenic |
| GCCACTGTACATATTCCGGA+GGG | 0.688748 | 7_1:+77649057 | None:intergenic |
| TCGCTCACTGCCAAACCGAG+AGG | 0.692246 | 7_1:-77647844 | Msa1040310:CDS |
| TAAACCATGCTAAATGCACA+AGG | 0.692567 | 7_1:-77648310 | Msa1040310:CDS |
| GGTGACATGTATTATCACAA+GGG | 0.699950 | 7_1:+77647553 | None:intergenic |
| ACCCTCCGGAATATGTACAG+TGG | 0.713677 | 7_1:-77649058 | Msa1040310:CDS |
| CATTCATGCCAATAGCCATG+GGG | 0.744235 | 7_1:+77648338 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAGAAATAATTAAAGTTTT+AGG | - | chr7_1:77647738-77647757 | Msa1040310:intron | 10.0% |
| !!! | ATATGTAAAATTTGATATTT+TGG | - | chr7_1:77648253-77648272 | Msa1040310:intron | 10.0% |
| !!! | TATGTAAAATTTGATATTTT+GGG | - | chr7_1:77648254-77648273 | Msa1040310:intron | 10.0% |
| !! | TAACAAAAAATAATGAAAAA+GGG | - | chr7_1:77650666-77650685 | Msa1040310:exon | 10.0% |
| !!! | GTAAGTTTTTTTTTTTTTTT+TGG | - | chr7_1:77650690-77650709 | Msa1040310:five_prime_UTR | 10.0% |
| !! | CAAAAATATTTAATATTGAG+AGG | + | chr7_1:77647518-77647537 | None:intergenic | 15.0% |
| !!! | TTGCTTTTTTAATTTGTTAT+AGG | - | chr7_1:77648024-77648043 | Msa1040310:intron | 15.0% |
| !! | ATGTAAAAATTAATTACACT+AGG | - | chr7_1:77648173-77648192 | Msa1040310:intron | 15.0% |
| !!! | GATTAATTTTTTTGTAATGA+TGG | + | chr7_1:77648765-77648784 | None:intergenic | 15.0% |
| !! | ATAAACTATTTGTAATAAGT+TGG | + | chr7_1:77648915-77648934 | None:intergenic | 15.0% |
| !! | AAATAGTTTATATTCTTTCA+TGG | - | chr7_1:77648924-77648943 | Msa1040310:intron | 15.0% |
| !! | ACATTTAATCATTTCATTAT+CGG | + | chr7_1:77649420-77649439 | None:intergenic | 15.0% |
| !! | AATGAAATGATTAAATGTAT+CGG | - | chr7_1:77649422-77649441 | Msa1040310:intron | 15.0% |
| !!! | TAAGAAAAGTGTATAAATAA+AGG | - | chr7_1:77649741-77649760 | Msa1040310:intron | 15.0% |
| !!! | AAGAAAAGTGTATAAATAAA+GGG | - | chr7_1:77649742-77649761 | Msa1040310:intron | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr7_1:77649806-77649825 | Msa1040310:CDS | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr7_1:77649807-77649826 | Msa1040310:CDS | 15.0% |
| !! | TTATTACTATATTATTCAGT+TGG | - | chr7_1:77649930-77649949 | Msa1040310:intron | 15.0% |
| !!! | TTCATTATTTTTTGTTACTT+TGG | + | chr7_1:77650663-77650682 | None:intergenic | 15.0% |
| !! | GTAACAAAAAATAATGAAAA+AGG | - | chr7_1:77650665-77650684 | Msa1040310:exon | 15.0% |
| !! | AACAAAAAATAATGAAAAAG+GGG | - | chr7_1:77650667-77650686 | Msa1040310:exon | 15.0% |
| !! | ATATTTAATATTGAGAGGAA+AGG | + | chr7_1:77647513-77647532 | None:intergenic | 20.0% |
| !! | AATTGAATGAAAATTAAACC+TGG | + | chr7_1:77647984-77648003 | None:intergenic | 20.0% |
| !!! | AATTTGCAGATTTTTTCAAT+TGG | - | chr7_1:77648080-77648099 | Msa1040310:intron | 20.0% |
| !!! | AGTTAACTTTTATGCAAAAA+AGG | + | chr7_1:77648317-77648336 | None:intergenic | 20.0% |
| !! | TTTGTTTGCATTGAAATTAT+AGG | - | chr7_1:77648803-77648822 | Msa1040310:intron | 20.0% |
| !! | AATTATAGGATTGATATATC+TGG | - | chr7_1:77648817-77648836 | Msa1040310:intron | 20.0% |
| !!! | AGAAAAGTGTATAAATAAAG+GGG | - | chr7_1:77649743-77649762 | Msa1040310:intron | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr7_1:77649766-77649785 | Msa1040310:CDS | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr7_1:77649876-77649895 | Msa1040310:intron | 20.0% |
| !! | TCTTTATAATCAAGCTAAAA+GGG | + | chr7_1:77650633-77650652 | None:intergenic | 20.0% |
| !! | ATCTTTATAATCAAGCTAAA+AGG | + | chr7_1:77650634-77650653 | None:intergenic | 20.0% |
| !! | ACAAAAAATAATGAAAAAGG+GGG | - | chr7_1:77650668-77650687 | Msa1040310:exon | 20.0% |
| !!! | TAGAGGTATTTCTTCTTATT+TGG | - | chr7_1:77647627-77647646 | Msa1040310:intron | 25.0% |
| !! | ATTTTCAGTTAATTATGCCA+TGG | + | chr7_1:77647716-77647735 | None:intergenic | 25.0% |
| !!! | AACTTTTTTACAGCAGAAAA+GGG | + | chr7_1:77647801-77647820 | None:intergenic | 25.0% |
| !!! | TAACTTTTTTACAGCAGAAA+AGG | + | chr7_1:77647802-77647821 | None:intergenic | 25.0% |
| ! | ATCATCATTATACATGGAAA+AGG | - | chr7_1:77647914-77647933 | Msa1040310:CDS | 25.0% |
| !! | TTTTATGCAAAAAAGGATAC+AGG | + | chr7_1:77648310-77648329 | None:intergenic | 25.0% |
| ! | AATGGAAGATTTGATGTTAA+AGG | - | chr7_1:77648541-77648560 | Msa1040310:intron | 25.0% |
| ! | ATGGAAGATTTGATGTTAAA+GGG | - | chr7_1:77648542-77648561 | Msa1040310:intron | 25.0% |
| !! | TTTTGTAATGATGGTAGAAA+TGG | + | chr7_1:77648756-77648775 | None:intergenic | 25.0% |
| !!! | TTCAGTTTTGTCAAATAGTT+AGG | - | chr7_1:77649093-77649112 | Msa1040310:intron | 25.0% |
| ! | TGAAAAAGGAGTAATAAAAC+AGG | + | chr7_1:77649194-77649213 | None:intergenic | 25.0% |
| ! | AATATCCTAAGTTTGTCAAT+TGG | - | chr7_1:77649296-77649315 | Msa1040310:CDS | 25.0% |
| ! | AAACAATAGTATATGAGATG+TGG | - | chr7_1:77649347-77649366 | Msa1040310:CDS | 25.0% |
| ! | CAAAGTAGGTCAATTAAATT+GGG | + | chr7_1:77649706-77649725 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr7_1:77649765-77649784 | Msa1040310:CDS | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr7_1:77649875-77649894 | Msa1040310:intron | 25.0% |
| !! | TACATACATTGACTAAATGT+AGG | - | chr7_1:77650262-77650281 | Msa1040310:intron | 25.0% |
| !! | TAACTTGATTTGATTGTCAT+CGG | - | chr7_1:77650478-77650497 | Msa1040310:CDS | 25.0% |
| ! | TATGATGTTAAGGAACAAAA+AGG | + | chr7_1:77650549-77650568 | None:intergenic | 25.0% |
| !! | TAGATTTTAGATCAATCCTA+CGG | + | chr7_1:77650581-77650600 | None:intergenic | 25.0% |
| TTATCACCAACTTGGTTTAT+GGG | - | chr7_1:77647288-77647307 | Msa1040310:three_prime_UTR | 30.0% | |
| TTGGTTTATGGGTTTGAATT+AGG | - | chr7_1:77647299-77647318 | Msa1040310:three_prime_UTR | 30.0% | |
| TATGGGTTTGAATTAGGATA+TGG | - | chr7_1:77647305-77647324 | Msa1040310:three_prime_UTR | 30.0% | |
| AGGTTGTATTGTTTGTTTGT+AGG | + | chr7_1:77647486-77647505 | None:intergenic | 30.0% | |
| ! | GATGATCCTTTCTTTTCTTT+TGG | - | chr7_1:77647652-77647671 | Msa1040310:intron | 30.0% |
| ! | GAAGTACCAAAAGAAAAGAA+AGG | + | chr7_1:77647661-77647680 | None:intergenic | 30.0% |
| TTACTAAGTATTCCTGTGAA+TGG | + | chr7_1:77647945-77647964 | None:intergenic | 30.0% | |
| AATAAACCTGAAGAAAATCC+AGG | - | chr7_1:77647963-77647982 | Msa1040310:intron | 30.0% | |
| ! | ATTAAACCTGGATTTTCTTC+AGG | + | chr7_1:77647972-77647991 | None:intergenic | 30.0% |
| ! | CTTTATTTACGTATGTTGTC+TGG | - | chr7_1:77648466-77648485 | Msa1040310:intron | 30.0% |
| ! | CATGGCTATGTTATTTAACA+TGG | - | chr7_1:77648942-77648961 | Msa1040310:intron | 30.0% |
| ACATGGTTGTAACATTTGTA+AGG | - | chr7_1:77648959-77648978 | Msa1040310:intron | 30.0% | |
| ATTATTTGGTTGATCACTGT+AGG | - | chr7_1:77648992-77649011 | Msa1040310:intron | 30.0% | |
| ATCAATGATTATGATTACCG+AGG | + | chr7_1:77649066-77649085 | None:intergenic | 30.0% | |
| TCAATACTGCTTATGATTCA+TGG | - | chr7_1:77649267-77649286 | Msa1040310:CDS | 30.0% | |
| AACATTGGACACAATACTAA+CGG | - | chr7_1:77649380-77649399 | Msa1040310:CDS | 30.0% | |
| CCAAAGTAGGTCAATTAAAT+TGG | + | chr7_1:77649707-77649726 | None:intergenic | 30.0% | |
| CCAATTTAATTGACCTACTT+TGG | - | chr7_1:77649704-77649723 | Msa1040310:intron | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr7_1:77649750-77649769 | Msa1040310:intron | 30.0% | |
| ! | TTGAAACGAGTCAGTTATTT+TGG | - | chr7_1:77649853-77649872 | Msa1040310:intron | 30.0% |
| !! | TGAAACGAGTCAGTTATTTT+GGG | - | chr7_1:77649854-77649873 | Msa1040310:intron | 30.0% |
| TTCTCAAGATCAAACAAGAA+TGG | - | chr7_1:77650018-77650037 | Msa1040310:CDS | 30.0% | |
| TGATAATACATGTCACCATT+TGG | - | chr7_1:77650358-77650377 | Msa1040310:CDS | 30.0% | |
| TGATGATCATGTATGAACTT+TGG | + | chr7_1:77650396-77650415 | None:intergenic | 30.0% | |
| TCATACATGATCATCATCAA+TGG | - | chr7_1:77650400-77650419 | Msa1040310:intron | 30.0% | |
| !!! | TGGAAGTGTTTTTCACTATT+TGG | - | chr7_1:77650507-77650526 | Msa1040310:CDS | 30.0% |
| !!! | GGAAGTGTTTTTCACTATTT+GGG | - | chr7_1:77650508-77650527 | Msa1040310:CDS | 30.0% |
| !! | AGAACTTGTTATCACCAACT+TGG | - | chr7_1:77647280-77647299 | Msa1040310:three_prime_UTR | 35.0% |
| GTTATCACCAACTTGGTTTA+TGG | - | chr7_1:77647287-77647306 | Msa1040310:three_prime_UTR | 35.0% | |
| TTCAAACCCATAAACCAAGT+TGG | + | chr7_1:77647297-77647316 | None:intergenic | 35.0% | |
| TGAAGAACTCTTTCTGTTAG+AGG | - | chr7_1:77647358-77647377 | Msa1040310:three_prime_UTR | 35.0% | |
| ATTTCCATTACCCTCAAGAA+AGG | + | chr7_1:77647402-77647421 | None:intergenic | 35.0% | |
| ATATTGAGAGGAAAGGAGAA+AGG | + | chr7_1:77647506-77647525 | None:intergenic | 35.0% | |
| !! | CAGTTGGCTTGTTAATTTAG+AGG | - | chr7_1:77647610-77647629 | Msa1040310:CDS | 35.0% |
| TGTAACATGCATATATGCCA+TGG | - | chr7_1:77647696-77647715 | Msa1040310:intron | 35.0% | |
| TTCTAACTGTCATCATGTGT+TGG | - | chr7_1:77647763-77647782 | Msa1040310:intron | 35.0% | |
| TAAAGAGAGAATACTCTGTC+AGG | - | chr7_1:77647833-77647852 | Msa1040310:CDS | 35.0% | |
| AAAGAGAGAATACTCTGTCA+GGG | - | chr7_1:77647834-77647853 | Msa1040310:CDS | 35.0% | |
| GTGTTTATCGCAAGAAAACA+CGG | - | chr7_1:77647886-77647905 | Msa1040310:CDS | 35.0% | |
| ATGAGCAACAATAACATGAG+AGG | + | chr7_1:77648056-77648075 | None:intergenic | 35.0% | |
| GTAAAGCTTCGTTATTGTGA+TGG | - | chr7_1:77648109-77648128 | Msa1040310:intron | 35.0% | |
| TAGGTAACTGACTAACAAAC+TGG | - | chr7_1:77648192-77648211 | Msa1040310:intron | 35.0% | |
| CAAAAAAGGATACAGGTCTA+CGG | + | chr7_1:77648303-77648322 | None:intergenic | 35.0% | |
| CAAGTCATGTATCTCAACAA+TGG | + | chr7_1:77648402-77648421 | None:intergenic | 35.0% | |
| CACAGTGTATAATAGTAGCT+AGG | + | chr7_1:77648616-77648635 | None:intergenic | 35.0% | |
| ATACACTGTGATGAATTTCG+AGG | - | chr7_1:77648626-77648645 | Msa1040310:intron | 35.0% | |
| AATGATGGTAGAAATGGCAT+TGG | + | chr7_1:77648750-77648769 | None:intergenic | 35.0% | |
| TGGTATTCTTGTGATTAGTG+TGG | + | chr7_1:77648895-77648914 | None:intergenic | 35.0% | |
| AAGGCATGCTGAGAATTATT+TGG | - | chr7_1:77648978-77648997 | Msa1040310:intron | 35.0% | |
| AGGTGATTAGTACAAATCTG+TGG | + | chr7_1:77649035-77649054 | None:intergenic | 35.0% | |
| ATGATTATGATTACCGAGGT+AGG | + | chr7_1:77649062-77649081 | None:intergenic | 35.0% | |
| AAAAAGTGGTGTTCTAACAC+TGG | + | chr7_1:77649243-77649262 | None:intergenic | 35.0% | |
| ! | GCAGTATTGAGAAGAAAAAG+TGG | + | chr7_1:77649257-77649276 | None:intergenic | 35.0% |
| GACTACCAATTGACAAACTT+AGG | + | chr7_1:77649304-77649323 | None:intergenic | 35.0% | |
| CTTGACTGAATCTGATAACA+AGG | + | chr7_1:77649525-77649544 | None:intergenic | 35.0% | |
| TAAACCATGCTAAATGCACA+AGG | - | chr7_1:77649595-77649614 | Msa1040310:intron | 35.0% | |
| ATACATCACCTTGCAGAAAT+TGG | + | chr7_1:77649629-77649648 | None:intergenic | 35.0% | |
| TTAGTACCATTCATTGCAAG+TGG | - | chr7_1:77649654-77649673 | Msa1040310:intron | 35.0% | |
| ! | TTTTCTCCACTTGCAATGAA+TGG | + | chr7_1:77649663-77649682 | None:intergenic | 35.0% |
| GTAGGTCAATTAAATTGGGA+CGG | + | chr7_1:77649702-77649721 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | + | chr7_1:77649720-77649739 | None:intergenic | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | - | chr7_1:77649889-77649908 | Msa1040310:intron | 35.0% | |
| ! | ATGGTTTTCAGACAATTCTC+CGG | - | chr7_1:77650092-77650111 | Msa1040310:intron | 35.0% |
| TTCACCTTGTTCCTAATAAC+CGG | + | chr7_1:77650114-77650133 | None:intergenic | 35.0% | |
| TAGGTAATTGCTTTAGCTGT+TGG | - | chr7_1:77650281-77650300 | Msa1040310:intron | 35.0% | |
| !!! | TTTTGATCGAGAAGGTGTTA+AGG | - | chr7_1:77650313-77650332 | Msa1040310:CDS | 35.0% |
| CATGTATTATCACAAGGGTA+AGG | + | chr7_1:77650350-77650369 | None:intergenic | 35.0% | |
| GGTGACATGTATTATCACAA+GGG | + | chr7_1:77650355-77650374 | None:intergenic | 35.0% | |
| TGGTGACATGTATTATCACA+AGG | + | chr7_1:77650356-77650375 | None:intergenic | 35.0% | |
| TACATGATCATCATCAATGG+AGG | - | chr7_1:77650403-77650422 | Msa1040310:intron | 35.0% | |
| TTGATTGTCATCGGTGAAAT+TGG | - | chr7_1:77650487-77650506 | Msa1040310:CDS | 35.0% | |
| GCTGCATACTTATGATGTTA+AGG | + | chr7_1:77650559-77650578 | None:intergenic | 35.0% | |
| !! | TTTTTGGTACATAGACGCAA+TGG | - | chr7_1:77650706-77650725 | Msa1040310:five_prime_UTR | 35.0% |
| AGAAACATTGTCATCGCCAA+TGG | - | chr7_1:77647229-77647248 | Msa1040310:three_prime_UTR | 40.0% | |
| ! | GCCAATGGCTAAACTTTTCT+GGG | - | chr7_1:77647244-77647263 | Msa1040310:three_prime_UTR | 40.0% |
| ACCCAGAAAAGTTTAGCCAT+TGG | + | chr7_1:77647248-77647267 | None:intergenic | 40.0% | |
| ! | TTGTTTTCTTGCAGTGTGCT+TGG | - | chr7_1:77647535-77647554 | Msa1040310:exon | 40.0% |
| TACCATTTGCATCGTGGATA+TGG | - | chr7_1:77647575-77647594 | Msa1040310:CDS | 40.0% | |
| ATCCATATCCACGATGCAAA+TGG | + | chr7_1:77647580-77647599 | None:intergenic | 40.0% | |
| TTACAGCAGAAAAGGGAAAG+TGG | + | chr7_1:77647794-77647813 | None:intergenic | 40.0% | |
| GCGTGGATCATCATTATACA+TGG | - | chr7_1:77647908-77647927 | Msa1040310:CDS | 40.0% | |
| GAAAAGGAGATACCATTCAC+AGG | - | chr7_1:77647930-77647949 | Msa1040310:intron | 40.0% | |
| AAGCTTCGTTATTGTGATGG+TGG | - | chr7_1:77648112-77648131 | Msa1040310:intron | 40.0% | |
| AGCAGAAACTTGTAAGAGCA+AGG | - | chr7_1:77648355-77648374 | Msa1040310:CDS | 40.0% | |
| AATTCAGAGGACAGCGAATT+TGG | - | chr7_1:77648510-77648529 | Msa1040310:intron | 40.0% | |
| ATTCAGAGGACAGCGAATTT+GGG | - | chr7_1:77648511-77648530 | Msa1040310:intron | 40.0% | |
| ! | GGGAATGCATTTTGCTAATC+AGG | - | chr7_1:77648562-77648581 | Msa1040310:intron | 40.0% |
| AATTTCGAGGTCTCTTTCCA+AGG | - | chr7_1:77648639-77648658 | Msa1040310:CDS | 40.0% | |
| CACTTCACTTTAGTAGTCCT+TGG | + | chr7_1:77648659-77648678 | None:intergenic | 40.0% | |
| AATATGTACAGTGGCGTTGT+AGG | - | chr7_1:77648856-77648875 | Msa1040310:intron | 40.0% | |
| ATATGTACAGTGGCGTTGTA+GGG | - | chr7_1:77648857-77648876 | Msa1040310:intron | 40.0% | |
| TAATCACCTTGATCCTACCT+CGG | - | chr7_1:77649046-77649065 | Msa1040310:CDS | 40.0% | |
| GAGGGAAGAAACACTGAAAA+AGG | + | chr7_1:77649208-77649227 | None:intergenic | 40.0% | |
| CACTGGCAATCAAATTCTGA+GGG | + | chr7_1:77649226-77649245 | None:intergenic | 40.0% | |
| ACACTGGCAATCAAATTCTG+AGG | + | chr7_1:77649227-77649246 | None:intergenic | 40.0% | |
| TACTGCTTATGATTCATGGC+AGG | - | chr7_1:77649271-77649290 | Msa1040310:CDS | 40.0% | |
| TGTGGCAGTAACACAAACAT+TGG | - | chr7_1:77649365-77649384 | Msa1040310:CDS | 40.0% | |
| GACTGAATCTGATAACAAGG+AGG | + | chr7_1:77649522-77649541 | None:intergenic | 40.0% | |
| CCTTGCAGAAATTGGATTTG+TGG | + | chr7_1:77649621-77649640 | None:intergenic | 40.0% | |
| CCACAAATCCAATTTCTGCA+AGG | - | chr7_1:77649618-77649637 | Msa1040310:intron | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | - | chr7_1:77649890-77649909 | Msa1040310:intron | 40.0% | |
| TTTCACCGTCTCTTGAATAC+AGG | - | chr7_1:77649961-77649980 | Msa1040310:CDS | 40.0% | |
| TTCACCGTCTCTTGAATACA+GGG | - | chr7_1:77649962-77649981 | Msa1040310:CDS | 40.0% | |
| TGAACCCTGTATTCAAGAGA+CGG | + | chr7_1:77649969-77649988 | None:intergenic | 40.0% | |
| AAACCATGTATCTTGCCTCT+CGG | + | chr7_1:77650079-77650098 | None:intergenic | 40.0% | |
| CAGACAATTCTCCGGTTATT+AGG | - | chr7_1:77650100-77650119 | Msa1040310:intron | 40.0% | |
| TTCTCCGGTTATTAGGAACA+AGG | - | chr7_1:77650107-77650126 | Msa1040310:intron | 40.0% | |
| !!! | GACTGGTATTTTGATCGAGA+AGG | - | chr7_1:77650305-77650324 | Msa1040310:CDS | 40.0% |
| TGGCTCAACTGAAAACCAAA+TGG | + | chr7_1:77650376-77650395 | None:intergenic | 40.0% | |
| TTCACTATTTGGGAATGCTG+AGG | - | chr7_1:77650518-77650537 | Msa1040310:CDS | 40.0% | |
| ! | CGCCAATGGCTAAACTTTTC+TGG | - | chr7_1:77647243-77647262 | Msa1040310:three_prime_UTR | 45.0% |
| ACATGCAGCATCCTTTCTTG+AGG | - | chr7_1:77647388-77647407 | Msa1040310:three_prime_UTR | 45.0% | |
| CATGCAGCATCCTTTCTTGA+GGG | - | chr7_1:77647389-77647408 | Msa1040310:three_prime_UTR | 45.0% | |
| GCATCCTTTCTTGAGGGTAA+TGG | - | chr7_1:77647395-77647414 | Msa1040310:three_prime_UTR | 45.0% | |
| AATGGAAATCCTCTGCTCGT+AGG | - | chr7_1:77647413-77647432 | Msa1040310:three_prime_UTR | 45.0% | |
| AGCAGCTGCATTGTGGATAA+GGG | + | chr7_1:77647444-77647463 | None:intergenic | 45.0% | |
| TAGCAGCTGCATTGTGGATA+AGG | + | chr7_1:77647445-77647464 | None:intergenic | 45.0% | |
| ATCCACAATGCAGCTGCTAA+AGG | - | chr7_1:77647446-77647465 | Msa1040310:three_prime_UTR | 45.0% | |
| TTTCTTGCAGTGTGCTTGGA+TGG | - | chr7_1:77647539-77647558 | Msa1040310:CDS | 45.0% | |
| TGCTTGGATGGAACATTACC+TGG | - | chr7_1:77647551-77647570 | Msa1040310:CDS | 45.0% | |
| TTGCATCGTGGATATGGATC+AGG | - | chr7_1:77647581-77647600 | Msa1040310:CDS | 45.0% | |
| ATGGATCAGGAGCAAACAGT+TGG | - | chr7_1:77647594-77647613 | Msa1040310:CDS | 45.0% | |
| !! | TGTGATGGTGGCTCATTTAC+TGG | - | chr7_1:77648124-77648143 | Msa1040310:intron | 45.0% |
| TACTGGAGATGGTGAAGATC+AGG | - | chr7_1:77648141-77648160 | Msa1040310:intron | 45.0% | |
| GAAGCAGAACTGCAATTCAG+AGG | - | chr7_1:77648497-77648516 | Msa1040310:intron | 45.0% | |
| GCTAATCAGGCTCTTCTTTC+CGG | - | chr7_1:77648575-77648594 | Msa1040310:intron | 45.0% | |
| TCTTCTTTCCGGATGTTCAG+CGG | - | chr7_1:77648586-77648605 | Msa1040310:intron | 45.0% | |
| ! | TGAAGTGTCTTAGCGATGCA+GGG | - | chr7_1:77648672-77648691 | Msa1040310:CDS | 45.0% |
| CAACGCCACTGTACATATTC+CGG | + | chr7_1:77648855-77648874 | None:intergenic | 45.0% | |
| TGATTACCGAGGTAGGATCA+AGG | + | chr7_1:77649055-77649074 | None:intergenic | 45.0% | |
| AGTGTCGTGTCAATGCTACA+TGG | - | chr7_1:77649453-77649472 | Msa1040310:intron | 45.0% | |
| CATTCATGCCAATAGCCATG+GGG | + | chr7_1:77649570-77649589 | None:intergenic | 45.0% | |
| GCATTCATGCCAATAGCCAT+GGG | + | chr7_1:77649571-77649590 | None:intergenic | 45.0% | |
| TGCATTCATGCCAATAGCCA+TGG | + | chr7_1:77649572-77649591 | None:intergenic | 45.0% | |
| GGTCAATTAAATTGGGACGG+AGG | + | chr7_1:77649699-77649718 | None:intergenic | 45.0% | |
| GTCTCTTGAATACAGGGTTC+AGG | - | chr7_1:77649968-77649987 | Msa1040310:CDS | 45.0% | |
| ATGTATCTTGCCTCTCGGTT+TGG | + | chr7_1:77650074-77650093 | None:intergenic | 45.0% | |
| AAACCGAGAGGCAAGATACA+TGG | - | chr7_1:77650073-77650092 | Msa1040310:intron | 45.0% | |
| TTGCTTTAGCTGTTGGAGAC+TGG | - | chr7_1:77650288-77650307 | Msa1040310:intron | 45.0% | |
| CATCATAAGTATGCAGCCGT+AGG | - | chr7_1:77650562-77650581 | Msa1040310:CDS | 45.0% | |
| CTCCTTTAGCAGCTGCATTG+TGG | + | chr7_1:77647451-77647470 | None:intergenic | 50.0% | |
| AATGCAGCTGCTAAAGGAGC+AGG | - | chr7_1:77647452-77647471 | Msa1040310:three_prime_UTR | 50.0% | |
| CCACGATGCAAATGGTAACC+AGG | + | chr7_1:77647572-77647591 | None:intergenic | 50.0% | |
| CCTGGTTACCATTTGCATCG+TGG | - | chr7_1:77647569-77647588 | Msa1040310:CDS | 50.0% | |
| GAGAGAATACTCTGTCAGGG+AGG | - | chr7_1:77647837-77647856 | Msa1040310:CDS | 50.0% | |
| AGAATACTCTGTCAGGGAGG+TGG | - | chr7_1:77647840-77647859 | Msa1040310:CDS | 50.0% | |
| TATCGCAAGAAAACACGGCG+TGG | - | chr7_1:77647891-77647910 | Msa1040310:CDS | 50.0% | |
| GGTGGCTCATTTACTGGAGA+TGG | - | chr7_1:77648130-77648149 | Msa1040310:intron | 50.0% | |
| CGTATGTTGTCTGGTGAGAC+AGG | - | chr7_1:77648475-77648494 | Msa1040310:intron | 50.0% | |
| CTTCTTTCCGGATGTTCAGC+GGG | - | chr7_1:77648587-77648606 | Msa1040310:intron | 50.0% | |
| ! | GTGAAGTGTCTTAGCGATGC+AGG | - | chr7_1:77648671-77648690 | Msa1040310:CDS | 50.0% |
| ACCCTCCGGAATATGTACAG+TGG | - | chr7_1:77648847-77648866 | Msa1040310:intron | 50.0% | |
| GCCACTGTACATATTCCGGA+GGG | + | chr7_1:77648851-77648870 | None:intergenic | 50.0% | |
| !! | GTGGCCTTGTGCATTTAGCA+TGG | + | chr7_1:77649602-77649621 | None:intergenic | 50.0% |
| ATGGGTCAGTTATTCCGGGA+CGG | - | chr7_1:77649894-77649913 | Msa1040310:intron | 50.0% | |
| ATAAGTTACTCCCTCCGTCC+CGG | + | chr7_1:77649911-77649930 | None:intergenic | 50.0% | |
| TACTCTGTCAGGGAGGTGGA+TGG | - | chr7_1:77647844-77647863 | Msa1040310:CDS | 55.0% | |
| GCGAATTTGGGCAGCTGCAA+TGG | - | chr7_1:77648523-77648542 | Msa1040310:intron | 55.0% | |
| CGCCACTGTACATATTCCGG+AGG | + | chr7_1:77648852-77648871 | None:intergenic | 55.0% | |
| TAGCCATGGGGATCTGCTGA+TGG | + | chr7_1:77649558-77649577 | None:intergenic | 55.0% | |
| CAGCAGATCCCCATGGCTAT+TGG | - | chr7_1:77649559-77649578 | Msa1040310:intron | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | - | chr7_1:77649898-77649917 | Msa1040310:intron | 55.0% | |
| AGGGTGAGTCCTACGAGCAG+AGG | + | chr7_1:77647425-77647444 | None:intergenic | 60.0% | |
| CTTTCCGGATGTTCAGCGGG+TGG | - | chr7_1:77648590-77648609 | Msa1040310:intron | 60.0% | |
| TAGGCCACCCGCTGAACATC+CGG | + | chr7_1:77648597-77648616 | None:intergenic | 60.0% | |
| CAGTGGCGTTGTAGGGATGC+AGG | - | chr7_1:77648864-77648883 | Msa1040310:CDS | 60.0% | |
| CCATGGGGATCTGCTGATGG+AGG | + | chr7_1:77649555-77649574 | None:intergenic | 60.0% | |
| CCTCCATCAGCAGATCCCCA+TGG | - | chr7_1:77649552-77649571 | Msa1040310:intron | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr7_1:77649897-77649916 | Msa1040310:intron | 60.0% | |
| TCGCTCACTGCCAAACCGAG+AGG | - | chr7_1:77650061-77650080 | Msa1040310:intron | 60.0% | |
| TATCTGGCGAGCGCACCCTC+CGG | - | chr7_1:77648833-77648852 | Msa1040310:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 77647198 | 77650729 | 77647198 | ID=Msa1040310;Name=Msa1040310 |
| chr7_1 | mRNA | 77647198 | 77650729 | 77647198 | ID=Msa1040310-mRNA-1;Parent=Msa1040310;Name=Msa1040310-mRNA-1;_AED=0.14;_eAED=0.14;_QI=50|1|1|1|1|1|11|338|425 |
| chr7_1 | exon | 77647198 | 77647643 | 77647198 | ID=Msa1040310-mRNA-1:exon:20510;Parent=Msa1040310-mRNA-1 |
| chr7_1 | exon | 77647799 | 77647944 | 77647799 | ID=Msa1040310-mRNA-1:exon:20509;Parent=Msa1040310-mRNA-1 |
| chr7_1 | exon | 77648288 | 77648393 | 77648288 | ID=Msa1040310-mRNA-1:exon:20508;Parent=Msa1040310-mRNA-1 |
| chr7_1 | exon | 77648635 | 77648712 | 77648635 | ID=Msa1040310-mRNA-1:exon:20507;Parent=Msa1040310-mRNA-1 |
| chr7_1 | exon | 77648860 | 77648913 | 77648860 | ID=Msa1040310-mRNA-1:exon:20506;Parent=Msa1040310-mRNA-1 |
| chr7_1 | exon | 77649042 | 77649102 | 77649042 | ID=Msa1040310-mRNA-1:exon:20505;Parent=Msa1040310-mRNA-1 |
| chr7_1 | exon | 77649219 | 77649430 | 77649219 | ID=Msa1040310-mRNA-1:exon:20504;Parent=Msa1040310-mRNA-1 |
| chr7_1 | exon | 77649765 | 77649838 | 77649765 | ID=Msa1040310-mRNA-1:exon:20503;Parent=Msa1040310-mRNA-1 |
| chr7_1 | exon | 77649943 | 77650072 | 77649943 | ID=Msa1040310-mRNA-1:exon:20502;Parent=Msa1040310-mRNA-1 |
| chr7_1 | exon | 77650296 | 77650378 | 77650296 | ID=Msa1040310-mRNA-1:exon:20501;Parent=Msa1040310-mRNA-1 |
| chr7_1 | exon | 77650454 | 77650729 | 77650454 | ID=Msa1040310-mRNA-1:exon:20500;Parent=Msa1040310-mRNA-1 |
| chr7_1 | five_prime_UTR | 77650680 | 77650729 | 77650680 | ID=Msa1040310-mRNA-1:five_prime_utr;Parent=Msa1040310-mRNA-1 |
| chr7_1 | CDS | 77650454 | 77650679 | 77650454 | ID=Msa1040310-mRNA-1:cds;Parent=Msa1040310-mRNA-1 |
| chr7_1 | CDS | 77650296 | 77650378 | 77650296 | ID=Msa1040310-mRNA-1:cds;Parent=Msa1040310-mRNA-1 |
| chr7_1 | CDS | 77649943 | 77650072 | 77649943 | ID=Msa1040310-mRNA-1:cds;Parent=Msa1040310-mRNA-1 |
| chr7_1 | CDS | 77649765 | 77649838 | 77649765 | ID=Msa1040310-mRNA-1:cds;Parent=Msa1040310-mRNA-1 |
| chr7_1 | CDS | 77649219 | 77649430 | 77649219 | ID=Msa1040310-mRNA-1:cds;Parent=Msa1040310-mRNA-1 |
| chr7_1 | CDS | 77649042 | 77649102 | 77649042 | ID=Msa1040310-mRNA-1:cds;Parent=Msa1040310-mRNA-1 |
| chr7_1 | CDS | 77648860 | 77648913 | 77648860 | ID=Msa1040310-mRNA-1:cds;Parent=Msa1040310-mRNA-1 |
| chr7_1 | CDS | 77648635 | 77648712 | 77648635 | ID=Msa1040310-mRNA-1:cds;Parent=Msa1040310-mRNA-1 |
| chr7_1 | CDS | 77648288 | 77648393 | 77648288 | ID=Msa1040310-mRNA-1:cds;Parent=Msa1040310-mRNA-1 |
| chr7_1 | CDS | 77647799 | 77647944 | 77647799 | ID=Msa1040310-mRNA-1:cds;Parent=Msa1040310-mRNA-1 |
| chr7_1 | CDS | 77647536 | 77647643 | 77647536 | ID=Msa1040310-mRNA-1:cds;Parent=Msa1040310-mRNA-1 |
| chr7_1 | three_prime_UTR | 77647198 | 77647535 | 77647198 | ID=Msa1040310-mRNA-1:three_prime_utr;Parent=Msa1040310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
