Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1351780 | XP_003626125.1 | 95.070 | 426 | 13 | 3 | 1 | 425 | 1 | 419 | 0.0 | 842 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1351780 | sp|Q9SFF6|PAE12_ARATH | 67.866 | 417 | 128 | 2 | 8 | 424 | 4 | 414 | 0.0 | 618 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1351780 | Q2HRU2 | 95.070 | 426 | 13 | 3 | 1 | 425 | 1 | 419 | 0.0 | 842 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005890 | Msa1351780 | 0.808782 | 2.614741e-50 | -8.615850e-47 |
| Msa0042610 | Msa1351780 | 0.817945 | 2.533620e-52 | -8.615850e-47 |
| Msa0081520 | Msa1351780 | 0.800752 | 1.243420e-48 | -8.615850e-47 |
| Msa1351780 | Msa1373100 | 0.806040 | 9.978046e-50 | -8.615850e-47 |
| Msa1351780 | Msa1422950 | 0.805583 | 1.244723e-49 | -8.615850e-47 |
| Msa1351780 | Msa1440880 | 0.839371 | 1.649137e-57 | -8.615850e-47 |
| Msa1351780 | Msa1446820 | 0.824793 | 6.658265e-54 | -8.615850e-47 |
| Msa0658640 | Msa1351780 | 0.803344 | 3.645875e-49 | -8.615850e-47 |
| Msa0679870 | Msa1351780 | 0.827623 | 1.412789e-54 | -8.615850e-47 |
| Msa0704410 | Msa1351780 | 0.808856 | 2.521300e-50 | -8.615850e-47 |
| Msa0134610 | Msa1351780 | 0.813353 | 2.671914e-51 | -8.615850e-47 |
| Msa0223080 | Msa1351780 | 0.828618 | 8.133780e-55 | -8.615850e-47 |
| Msa1226520 | Msa1351780 | 0.804524 | 2.072367e-49 | -8.615850e-47 |
| Msa1227940 | Msa1351780 | 0.800618 | 1.324682e-48 | -8.615850e-47 |
| Msa1251160 | Msa1351780 | 0.815322 | 9.809339e-52 | -8.615850e-47 |
| Msa0371170 | Msa1351780 | 0.824901 | 6.277077e-54 | -8.615850e-47 |
| Msa0405710 | Msa1351780 | 0.803578 | 3.261214e-49 | -8.615850e-47 |
| Msa0465400 | Msa1351780 | 0.800387 | 1.475872e-48 | -8.615850e-47 |
| Msa0475790 | Msa1351780 | 0.818409 | 1.989860e-52 | -8.615850e-47 |
| Msa1003740 | Msa1351780 | 0.808985 | 2.366222e-50 | -8.615850e-47 |
| Msa1003800 | Msa1351780 | 0.822363 | 2.465399e-53 | -8.615850e-47 |
| Msa1003930 | Msa1351780 | 0.807036 | 6.148324e-50 | -8.615850e-47 |
| Msa1037910 | Msa1351780 | 0.801595 | 8.359767e-49 | -8.615850e-47 |
| Msa1040310 | Msa1351780 | 0.913616 | 5.007548e-84 | -8.615850e-47 |
| Msa1083080 | Msa1351780 | 0.928328 | 3.372488e-92 | -8.615850e-47 |
| Msa1103990 | Msa1351780 | 0.800675 | 1.289253e-48 | -8.615850e-47 |
| Msa0239190 | Msa1351780 | 0.827564 | 1.459084e-54 | -8.615850e-47 |
| Msa0277180 | Msa1351780 | 0.820230 | 7.653530e-53 | -8.615850e-47 |
| Msa0302160 | Msa1351780 | 0.826058 | 3.340337e-54 | -8.615850e-47 |
| Msa0339490 | Msa1351780 | 0.828675 | 7.880564e-55 | -8.615850e-47 |
| Msa1127960 | Msa1351780 | 0.943524 | 1.030909e-102 | -8.615850e-47 |
| Msa1184330 | Msa1351780 | 0.813144 | 2.969195e-51 | -8.615850e-47 |
| Msa0483910 | Msa1351780 | 0.824410 | 8.193620e-54 | -8.615850e-47 |
| Msa0580370 | Msa1351780 | 0.800074 | 1.709268e-48 | -8.615850e-47 |
| Msa0600930 | Msa1351780 | 0.806405 | 8.357536e-50 | -8.615850e-47 |
| Msa0894790 | Msa1351780 | 0.800705 | 1.271610e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1351780 | MtrunA17_Chr7g0271231 | 95.070 | 426 | 13 | 3 | 1 | 425 | 1 | 419 | 0.0 | 842 |
| Msa1351780 | MtrunA17_Chr1g0193381 | 75.708 | 424 | 94 | 3 | 1 | 424 | 1 | 415 | 0.0 | 669 |
| Msa1351780 | MtrunA17_Chr7g0270931 | 71.662 | 367 | 104 | 0 | 59 | 425 | 49 | 415 | 0.0 | 592 |
| Msa1351780 | MtrunA17_Chr1g0193761 | 69.430 | 386 | 116 | 1 | 41 | 424 | 17 | 402 | 0.0 | 583 |
| Msa1351780 | MtrunA17_Chr4g0069571 | 65.023 | 426 | 130 | 2 | 3 | 425 | 12 | 421 | 0.0 | 582 |
| Msa1351780 | MtrunA17_Chr5g0408881 | 54.144 | 362 | 164 | 1 | 62 | 421 | 29 | 390 | 9.02e-151 | 434 |
| Msa1351780 | MtrunA17_Chr8g0369681 | 51.733 | 375 | 177 | 2 | 52 | 424 | 19 | 391 | 2.67e-148 | 427 |
| Msa1351780 | MtrunA17_Chr8g0369651 | 51.771 | 367 | 175 | 1 | 60 | 424 | 26 | 392 | 3.78e-146 | 421 |
| Msa1351780 | MtrunA17_Chr1g0203101 | 53.930 | 369 | 165 | 3 | 60 | 423 | 37 | 405 | 7.71e-145 | 419 |
| Msa1351780 | MtrunA17_Chr1g0203121 | 53.659 | 369 | 166 | 3 | 60 | 423 | 37 | 405 | 1.45e-142 | 413 |
| Msa1351780 | MtrunA17_Chr7g0238491 | 50.802 | 374 | 172 | 4 | 61 | 425 | 56 | 426 | 4.71e-139 | 404 |
| Msa1351780 | MtrunA17_Chr5g0418101 | 50.276 | 362 | 174 | 2 | 61 | 420 | 41 | 398 | 6.42e-137 | 398 |
| Msa1351780 | MtrunA17_Chr1g0163701 | 56.863 | 102 | 44 | 0 | 243 | 344 | 271 | 372 | 2.98e-33 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1351780 | AT3G05910.1 | 67.866 | 417 | 128 | 2 | 8 | 424 | 4 | 414 | 0.0 | 618 |
| Msa1351780 | AT5G26670.1 | 68.471 | 425 | 123 | 3 | 1 | 424 | 1 | 415 | 0.0 | 612 |
| Msa1351780 | AT1G57590.1 | 73.352 | 364 | 97 | 0 | 61 | 424 | 79 | 442 | 0.0 | 589 |
| Msa1351780 | AT3G62060.2 | 61.916 | 428 | 142 | 4 | 4 | 424 | 5 | 418 | 0.0 | 567 |
| Msa1351780 | AT3G62060.1 | 61.916 | 428 | 142 | 4 | 4 | 424 | 5 | 418 | 0.0 | 566 |
| Msa1351780 | AT2G46930.1 | 60.714 | 420 | 147 | 3 | 5 | 424 | 14 | 415 | 0.0 | 556 |
| Msa1351780 | AT5G26670.3 | 72.054 | 297 | 83 | 0 | 128 | 424 | 1 | 297 | 1.13e-168 | 475 |
| Msa1351780 | AT5G26670.2 | 72.054 | 297 | 83 | 0 | 128 | 424 | 1 | 297 | 1.13e-168 | 475 |
| Msa1351780 | AT5G26670.4 | 72.054 | 297 | 83 | 0 | 128 | 424 | 1 | 297 | 1.13e-168 | 475 |
| Msa1351780 | AT1G09550.1 | 59.128 | 367 | 146 | 2 | 40 | 403 | 17 | 382 | 4.49e-163 | 464 |
| Msa1351780 | AT4G19420.1 | 54.377 | 377 | 170 | 1 | 51 | 425 | 14 | 390 | 5.36e-156 | 447 |
| Msa1351780 | AT4G19420.2 | 54.377 | 377 | 170 | 1 | 51 | 425 | 14 | 390 | 5.36e-156 | 447 |
| Msa1351780 | AT5G23870.1 | 54.076 | 368 | 163 | 4 | 62 | 423 | 35 | 402 | 5.09e-150 | 432 |
| Msa1351780 | AT5G23870.4 | 54.076 | 368 | 163 | 4 | 62 | 423 | 35 | 402 | 5.09e-150 | 432 |
| Msa1351780 | AT5G23870.2 | 54.076 | 368 | 163 | 4 | 62 | 423 | 35 | 402 | 6.29e-150 | 432 |
| Msa1351780 | AT5G23870.3 | 54.076 | 368 | 163 | 4 | 62 | 423 | 35 | 402 | 9.24e-150 | 433 |
| Msa1351780 | AT4G19420.4 | 50.000 | 412 | 169 | 2 | 51 | 425 | 14 | 425 | 1.51e-149 | 431 |
| Msa1351780 | AT3G05910.2 | 64.725 | 309 | 103 | 2 | 8 | 316 | 4 | 306 | 5.56e-149 | 426 |
| Msa1351780 | AT3G09410.1 | 47.307 | 427 | 207 | 4 | 2 | 425 | 16 | 427 | 7.75e-144 | 417 |
| Msa1351780 | AT3G09405.1 | 45.606 | 421 | 202 | 4 | 2 | 419 | 13 | 409 | 3.90e-136 | 397 |
| Msa1351780 | AT5G45280.2 | 49.307 | 361 | 180 | 2 | 62 | 419 | 24 | 384 | 8.00e-135 | 392 |
| Msa1351780 | AT4G19410.1 | 49.030 | 361 | 181 | 2 | 62 | 419 | 24 | 384 | 1.85e-134 | 392 |
| Msa1351780 | AT4G19410.2 | 49.128 | 344 | 173 | 1 | 62 | 403 | 24 | 367 | 2.60e-127 | 378 |
| Msa1351780 | AT3G09410.3 | 51.796 | 334 | 158 | 1 | 61 | 391 | 60 | 393 | 1.31e-125 | 369 |
| Msa1351780 | AT5G45280.1 | 52.128 | 282 | 133 | 1 | 62 | 341 | 24 | 305 | 4.39e-109 | 326 |
| Msa1351780 | AT3G09405.2 | 49.175 | 303 | 149 | 2 | 120 | 419 | 2 | 302 | 2.84e-108 | 322 |
| Msa1351780 | AT4G19420.3 | 56.522 | 230 | 98 | 1 | 51 | 278 | 14 | 243 | 2.80e-90 | 276 |
Find 116 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTATCACCAACTTGGTTTA+TGG | 0.071657 | tig0012394:+31828 | Msa1351780:CDS |
| AATTCAGAGGACAGCGAATT+TGG | 0.187648 | tig0012394:+32983 | Msa1351780:CDS |
| GCTAATCAGGCTCTTCTTTC+CGG | 0.191020 | tig0012394:+33048 | Msa1351780:CDS |
| ATACATCACCTTGCAGAAAT+TGG | 0.207626 | tig0012394:-34100 | None:intergenic |
| CAGACAATTCTCCGGTTATT+AGG | 0.224305 | tig0012394:+34342 | Msa1351780:CDS |
| ATCTTTATAATCAAGCTAAA+AGG | 0.236684 | tig0012394:-34873 | None:intergenic |
| AATGGAAGATTTGATGTTAA+AGG | 0.242008 | tig0012394:+33014 | Msa1351780:CDS |
| TGTGATGGTGGCTCATTTAC+TGG | 0.246928 | tig0012394:+32596 | Msa1351780:CDS |
| TACCATTTGCATCGTGGATA+TGG | 0.251407 | tig0012394:+32113 | Msa1351780:CDS |
| TTGGTTTATGGGTTTGAATT+AGG | 0.260228 | tig0012394:+31840 | Msa1351780:CDS |
| TATGGGTTTGAATTAGGATA+TGG | 0.270691 | tig0012394:+31846 | Msa1351780:CDS |
| TTGATTGTCATCGGTGAAAT+TGG | 0.280151 | tig0012394:+34729 | Msa1351780:three_prime_UTR |
| TTATCACCAACTTGGTTTAT+GGG | 0.298292 | tig0012394:+31829 | Msa1351780:CDS |
| TCAATACTGCTTATGATTCA+TGG | 0.299224 | tig0012394:+33741 | Msa1351780:CDS |
| TGAAGAACTCTTTCTGTTAG+AGG | 0.300195 | tig0012394:+31899 | Msa1351780:CDS |
| CAGTTGGCTTGTTAATTTAG+AGG | 0.330535 | tig0012394:+32148 | Msa1351780:CDS |
| AATTATAGGATTGATATATC+TGG | 0.336116 | tig0012394:+33291 | Msa1351780:intron |
| TAGCAGCTGCATTGTGGATA+AGG | 0.344441 | tig0012394:-31983 | None:intergenic |
| ATGGAAGATTTGATGTTAAA+GGG | 0.348581 | tig0012394:+33015 | Msa1351780:CDS |
| CACTTCACTTTAGTAGTCCT+TGG | 0.363666 | tig0012394:-33129 | None:intergenic |
| TATGATGTTAAGGAACAAAA+AGG | 0.371526 | tig0012394:-34788 | None:intergenic |
| CCTTGCAGAAATTGGATTTG+TGG | 0.382065 | tig0012394:-34092 | None:intergenic |
| TTCACCTTGTTCCTAATAAC+CGG | 0.384001 | tig0012394:-34353 | None:intergenic |
| TGATAATACATGTCACCATT+TGG | 0.393033 | tig0012394:+34600 | Msa1351780:CDS |
| CAGCAGATCCCCATGGCTAT+TGG | 0.396660 | tig0012394:+34033 | Msa1351780:CDS |
| CTTCTTTCCGGATGTTCAGC+GGG | 0.402249 | tig0012394:+33060 | Msa1351780:CDS |
| ATTCAGAGGACAGCGAATTT+GGG | 0.404061 | tig0012394:+32984 | Msa1351780:CDS |
| CAACACCACTGTACATATTC+CGG | 0.405411 | tig0012394:-33326 | None:intergenic |
| TTACTAAGTATTCCTGTGAA+TGG | 0.407702 | tig0012394:-32414 | None:intergenic |
| ATGTATCTTGCCTCTCGGTT+TGG | 0.417685 | tig0012394:-34313 | None:intergenic |
| AGCAGCTGCATTGTGGATAA+GGG | 0.417871 | tig0012394:-31982 | None:intergenic |
| GCATCCTTTCTTGAGGGTAA+TGG | 0.436523 | tig0012394:+31936 | Msa1351780:CDS |
| TAGGTAATTGCTTTAGCTGT+TGG | 0.437321 | tig0012394:+34523 | Msa1351780:intron |
| GCTGCATACTTATGATGTTA+AGG | 0.437924 | tig0012394:-34798 | None:intergenic |
| TTGGTTTCTTGCAGTGTGCT+TGG | 0.438110 | tig0012394:+32073 | Msa1351780:intron |
| AATATGTACAGTGGTGTTGT+AGG | 0.448233 | tig0012394:+33330 | Msa1351780:CDS |
| TAGGCCACCCGCTGAACATC+CGG | 0.448568 | tig0012394:-33067 | None:intergenic |
| GCGAATTTGGGCAGCTGCAA+TGG | 0.455500 | tig0012394:+32996 | Msa1351780:CDS |
| TACTGGAGATGGTGAAGATC+AGG | 0.456973 | tig0012394:+32613 | Msa1351780:CDS |
| TTTCTTGCAGTGTGCTTGGA+TGG | 0.462046 | tig0012394:+32077 | Msa1351780:intron |
| TTGCTTTAGCTGTTGGAGAC+TGG | 0.466598 | tig0012394:+34530 | Msa1351780:CDS |
| GTCTCTTGAATACAGGGTTC+AGG | 0.466892 | tig0012394:+34210 | Msa1351780:intron |
| AATAAACCTGAAGAAAATCC+AGG | 0.477981 | tig0012394:+32435 | Msa1351780:CDS |
| ATCCACAATGCAGCTGCTAA+AGG | 0.480879 | tig0012394:+31987 | Msa1351780:CDS |
| GTGAAGTGTCTTAGCGATGC+AGG | 0.481043 | tig0012394:+33144 | Msa1351780:CDS |
| ATTTCCATTACCCTCAAGAA+AGG | 0.487996 | tig0012394:-31940 | None:intergenic |
| TAACTTGATTTGATTGTCAT+CGG | 0.489011 | tig0012394:+34720 | Msa1351780:three_prime_UTR |
| TTCTCAAGATCAAACAAGAA+TGG | 0.489491 | tig0012394:+34260 | Msa1351780:CDS |
| TCTTTATAATCAAGCTAAAA+GGG | 0.494899 | tig0012394:-34872 | None:intergenic |
| TTGCATCGTGGATATGGATC+AGG | 0.495342 | tig0012394:+32119 | Msa1351780:CDS |
| AATTTCGAGGTCTCTTTCCA+AGG | 0.497114 | tig0012394:+33112 | Msa1351780:CDS |
| ATCATCATTATACATGGAAA+AGG | 0.501178 | tig0012394:+32386 | Msa1351780:CDS |
| TGGCTCAACTGAAAACCAAA+TGG | 0.503838 | tig0012394:-34615 | None:intergenic |
| CTCCTTTAGCAGCTGCATTG+TGG | 0.510189 | tig0012394:-31989 | None:intergenic |
| TGCATTGATGCCAATAGCCA+TGG | 0.517327 | tig0012394:-34043 | None:intergenic |
| ATCCATATCCACGATGCAAA+TGG | 0.517887 | tig0012394:-32115 | None:intergenic |
| CATGCAGCATCCTTTCTTGA+GGG | 0.518276 | tig0012394:+31930 | Msa1351780:CDS |
| ATACACTGTGATGAATTTCG+AGG | 0.519543 | tig0012394:+33099 | Msa1351780:CDS |
| ACCCAGAAAAGTTTAGCCAT+TGG | 0.528435 | tig0012394:-31786 | None:intergenic |
| TAGCCATGGGGATCTGCTGA+TGG | 0.530490 | tig0012394:-34029 | None:intergenic |
| TCGTACATGATCATCATCAA+TGG | 0.532122 | tig0012394:+34642 | Msa1351780:three_prime_UTR |
| AGGACTTGTTATCACCAACT+TGG | 0.533797 | tig0012394:+31821 | Msa1351780:CDS |
| TGATGATCATGTACGAACTT+TGG | 0.542070 | tig0012394:-34635 | None:intergenic |
| CCACGATGCAAATGGTAACC+AGG | 0.545374 | tig0012394:-32107 | None:intergenic |
| GTAAAGCTTCGTTATTGTGA+TGG | 0.550885 | tig0012394:+32581 | Msa1351780:CDS |
| CAGTGGTGTTGTAGGGATGC+AGG | 0.553790 | tig0012394:+33338 | Msa1351780:CDS |
| TGCTTGGATGGAACATTACC+TGG | 0.558834 | tig0012394:+32089 | Msa1351780:CDS |
| TTCAAACCCATAAACCAAGT+TGG | 0.559248 | tig0012394:-31835 | None:intergenic |
| AATGCAGCTGCTAAAGGAGC+AGG | 0.563358 | tig0012394:+31993 | Msa1351780:CDS |
| AAACCGAGAGGCAAGATACA+TGG | 0.565165 | tig0012394:+34315 | Msa1351780:CDS |
| GCGTGGATCATCATTATACA+TGG | 0.565339 | tig0012394:+32380 | Msa1351780:CDS |
| TACTGCTTATGATTCATGGC+AGG | 0.565480 | tig0012394:+33745 | Msa1351780:CDS |
| TCTTCTTTCCGGATGTTCAG+CGG | 0.565522 | tig0012394:+33059 | Msa1351780:CDS |
| GTGGCCTTGTGCATTTAGCA+TGG | 0.567737 | tig0012394:-34073 | None:intergenic |
| GTGTTTATCGCAAGAAAACA+CGG | 0.570483 | tig0012394:+32358 | Msa1351780:CDS |
| GCATTGATGCCAATAGCCAT+GGG | 0.574607 | tig0012394:-34042 | None:intergenic |
| AGAAACATTGTCATCGCCAA+TGG | 0.576057 | tig0012394:+31770 | Msa1351780:exon |
| ACATGCAGCATCCTTTCTTG+AGG | 0.576567 | tig0012394:+31929 | Msa1351780:CDS |
| CACAGTGTATAATAGTAGCT+AGG | 0.579094 | tig0012394:-33086 | None:intergenic |
| GGTGGCTCATTTACTGGAGA+TGG | 0.581728 | tig0012394:+32602 | Msa1351780:CDS |
| TCTAACTGTCATCAGGGAGG+TGG | 0.582270 | tig0012394:+32312 | Msa1351780:intron |
| ACACTGGCAATCAAATTCTG+AGG | 0.583315 | tig0012394:-33698 | None:intergenic |
| ATGATTATGATTACCGAGGT+AGG | 0.584023 | tig0012394:-33533 | None:intergenic |
| CATGTATTATCACAAGGGTA+AGG | 0.587582 | tig0012394:-34589 | None:intergenic |
| ATGGATCAGGAGCAAACAGT+TGG | 0.589134 | tig0012394:+32132 | Msa1351780:CDS |
| TTCACTATTTGGGAATGCTG+AGG | 0.589472 | tig0012394:+34760 | Msa1351780:three_prime_UTR |
| CACTGGCAATCAAATTCTGA+GGG | 0.591267 | tig0012394:-33697 | None:intergenic |
| CTTTCCGGATGTTCAGCGGG+TGG | 0.596559 | tig0012394:+33063 | Msa1351780:CDS |
| GAAAAGGAGATACCATTCAC+AGG | 0.596897 | tig0012394:+32402 | Msa1351780:CDS |
| AAACCATGTATCTTGCCTCT+CGG | 0.596928 | tig0012394:-34318 | None:intergenic |
| AAGCTTCGTTATTGTGATGG+TGG | 0.600562 | tig0012394:+32584 | Msa1351780:CDS |
| CATCATAAGTATGCAGCCGT+AGG | 0.608287 | tig0012394:+34804 | Msa1351780:three_prime_UTR |
| TGGTGACATGTATTATCACA+AGG | 0.608610 | tig0012394:-34595 | None:intergenic |
| TGAAGTGTCTTAGCGATGCA+GGG | 0.608865 | tig0012394:+33145 | Msa1351780:CDS |
| CCTGGTTACCATTTGCATCG+TGG | 0.609738 | tig0012394:+32107 | Msa1351780:CDS |
| TGATTACCGAGGTAGGATCA+AGG | 0.612410 | tig0012394:-33526 | None:intergenic |
| ATATGTACAGTGGTGTTGTA+GGG | 0.613917 | tig0012394:+33331 | Msa1351780:CDS |
| CCATGGGGATCTGCTGATGG+AGG | 0.617825 | tig0012394:-34026 | None:intergenic |
| ACTGTCATCAGGGAGGTGGA+TGG | 0.626588 | tig0012394:+32316 | Msa1351780:intron |
| AGGGTGAGTCCTACGAGCAG+AGG | 0.626989 | tig0012394:-31963 | None:intergenic |
| TTCTCCGGTTATTAGGAACA+AGG | 0.636482 | tig0012394:+34349 | Msa1351780:CDS |
| CACCACTGTACATATTCCGG+AGG | 0.638914 | tig0012394:-33323 | None:intergenic |
| AATGGAAATCCTCTGCTCGT+AGG | 0.640827 | tig0012394:+31954 | Msa1351780:CDS |
| CCTCCATCAGCAGATCCCCA+TGG | 0.647413 | tig0012394:+34026 | Msa1351780:CDS |
| CCACAAATCCAATTTCTGCA+AGG | 0.649408 | tig0012394:+34092 | Msa1351780:CDS |
| TACATGATCATCATCAATGG+AGG | 0.650804 | tig0012394:+34645 | Msa1351780:three_prime_UTR |
| TAATCACCTTGATCCTACCT+CGG | 0.661838 | tig0012394:+33520 | Msa1351780:CDS |
| GAAGCAGAACTGCAATTCAG+AGG | 0.664323 | tig0012394:+32970 | Msa1351780:CDS |
| ACCACTGTACATATTCCGGA+GGG | 0.680732 | tig0012394:-33322 | None:intergenic |
| TATCGCAAGAAAACACGGCG+TGG | 0.683797 | tig0012394:+32363 | Msa1351780:CDS |
| AGGTGATTAGTACAAATCTG+TGG | 0.684849 | tig0012394:-33506 | None:intergenic |
| TCGCTCACTGCCAAACCGAG+AGG | 0.692246 | tig0012394:+34303 | Msa1351780:CDS |
| TAAACCATGCTAAATGCACA+AGG | 0.692567 | tig0012394:+34069 | Msa1351780:CDS |
| GGTGACATGTATTATCACAA+GGG | 0.699950 | tig0012394:-34594 | None:intergenic |
| ACCCTCCGGAATATGTACAG+TGG | 0.725020 | tig0012394:+33321 | Msa1351780:CDS |
| CATTGATGCCAATAGCCATG+GGG | 0.744235 | tig0012394:-34041 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAGAAATAATTAAAGTTTT+AGG | + | tig0012394:32286-32305 | Msa1351780:intron | 10.0% |
| !!! | ATATGTAAAATTTGATATTT+TGG | + | tig0012394:32725-32744 | Msa1351780:intron | 10.0% |
| !!! | TATGTAAAATTTGATATTTT+GGG | + | tig0012394:32726-32745 | Msa1351780:intron | 10.0% |
| !!! | ATTAATTTTTTTTGTAATGA+TGG | - | tig0012394:33238-33257 | None:intergenic | 10.0% |
| !! | TAACAAAAAATAATGAAAAA+GGG | + | tig0012394:34908-34927 | Msa1351780:three_prime_UTR | 10.0% |
| !! | CAAAAATATTTAATATTGAG+AGG | - | tig0012394:32056-32075 | None:intergenic | 15.0% |
| !!! | CTCTCAATATTAAATATTTT+TGG | + | tig0012394:32054-32073 | Msa1351780:intron | 15.0% |
| !!! | TTGCTTTTTTAATTTGTTAT+AGG | + | tig0012394:32496-32515 | Msa1351780:intron | 15.0% |
| !! | ATGTAAAAATTAATTACACT+AGG | + | tig0012394:32645-32664 | Msa1351780:intron | 15.0% |
| !! | AAATAGTTTATATTCTTTCA+TGG | + | tig0012394:33398-33417 | Msa1351780:intron | 15.0% |
| !! | ACATTTAATCATTTCATTAT+CGG | - | tig0012394:33894-33913 | None:intergenic | 15.0% |
| !! | AATGAAATGATTAAATGTAT+CGG | + | tig0012394:33896-33915 | Msa1351780:intron | 15.0% |
| !! | TTATTACTATATTATTCAGT+TGG | + | tig0012394:34172-34191 | Msa1351780:intron | 15.0% |
| !!! | TTCATTATTTTTTGTTACTT+TGG | - | tig0012394:34905-34924 | None:intergenic | 15.0% |
| !! | GTAACAAAAAATAATGAAAA+AGG | + | tig0012394:34907-34926 | Msa1351780:three_prime_UTR | 15.0% |
| !! | AACAAAAAATAATGAAAAAG+GGG | + | tig0012394:34909-34928 | Msa1351780:three_prime_UTR | 15.0% |
| !!! | GGTAAGTTTTTTTTTTTTTT+TGG | + | tig0012394:34931-34950 | Msa1351780:three_prime_UTR | 15.0% |
| !! | ATATTTAATATTGAGAGGAA+AGG | - | tig0012394:32051-32070 | None:intergenic | 20.0% |
| !!! | TCTTTTCTTTTCTTTTCTTT+TGG | + | tig0012394:32200-32219 | Msa1351780:intron | 20.0% |
| !! | AATTGAATGAAAATTAAACC+TGG | - | tig0012394:32456-32475 | None:intergenic | 20.0% |
| !!! | AATTTGCAGATTTTTTCAAT+TGG | + | tig0012394:32552-32571 | Msa1351780:intron | 20.0% |
| !!! | AGTTAACTTTTATGCAAAAA+AGG | - | tig0012394:32790-32809 | None:intergenic | 20.0% |
| !! | TTTGTTTGCATTGAAATTAT+AGG | + | tig0012394:33277-33296 | Msa1351780:intron | 20.0% |
| !! | AATTATAGGATTGATATATC+TGG | + | tig0012394:33291-33310 | Msa1351780:intron | 20.0% |
| !! | ATAAACTATTTGTAATAAGC+TGG | - | tig0012394:33389-33408 | None:intergenic | 20.0% |
| !! | AAATAATAGTATATGAGATG+TGG | + | tig0012394:33821-33840 | Msa1351780:intron | 20.0% |
| !! | TCTTTATAATCAAGCTAAAA+GGG | - | tig0012394:34875-34894 | None:intergenic | 20.0% |
| !! | ATCTTTATAATCAAGCTAAA+AGG | - | tig0012394:34876-34895 | None:intergenic | 20.0% |
| !! | ACAAAAAATAATGAAAAAGG+GGG | + | tig0012394:34910-34929 | Msa1351780:three_prime_UTR | 20.0% |
| !!! | TAGAGGTATTTCTTCTTATT+TGG | + | tig0012394:32165-32184 | Msa1351780:intron | 25.0% |
| !! | ATTTTCAGTTAATTATGCCA+TGG | - | tig0012394:32264-32283 | None:intergenic | 25.0% |
| ! | ATCATCATTATACATGGAAA+AGG | + | tig0012394:32386-32405 | Msa1351780:CDS | 25.0% |
| !! | TTTTATGCAAAAAAGGATAC+AGG | - | tig0012394:32783-32802 | None:intergenic | 25.0% |
| ! | AATGGAAGATTTGATGTTAA+AGG | + | tig0012394:33014-33033 | Msa1351780:CDS | 25.0% |
| ! | ATGGAAGATTTGATGTTAAA+GGG | + | tig0012394:33015-33034 | Msa1351780:CDS | 25.0% |
| !! | TTTTGTAATGATGGTAGAAA+TGG | - | tig0012394:33229-33248 | None:intergenic | 25.0% |
| ! | ATTATTTGTTTGATCACTGT+AGG | + | tig0012394:33466-33485 | Msa1351780:intron | 25.0% |
| !!! | TTCAGTTTTGTCAAATAGTT+AGG | + | tig0012394:33567-33586 | Msa1351780:intron | 25.0% |
| ! | TGAAAAAGGAGTAATAAAAC+AGG | - | tig0012394:33668-33687 | None:intergenic | 25.0% |
| ! | AATATCCTAAGTTTGTCAAT+TGG | + | tig0012394:33770-33789 | Msa1351780:intron | 25.0% |
| !! | TACATACATTGACTAAATGT+AGG | + | tig0012394:34504-34523 | Msa1351780:intron | 25.0% |
| !! | TAACTTGATTTGATTGTCAT+CGG | + | tig0012394:34720-34739 | Msa1351780:three_prime_UTR | 25.0% |
| ! | TATGATGTTAAGGAACAAAA+AGG | - | tig0012394:34791-34810 | None:intergenic | 25.0% |
| !! | TAGATTTTAGATCAATCCTA+CGG | - | tig0012394:34823-34842 | None:intergenic | 25.0% |
| TTATCACCAACTTGGTTTAT+GGG | + | tig0012394:31829-31848 | Msa1351780:CDS | 30.0% | |
| TTGGTTTATGGGTTTGAATT+AGG | + | tig0012394:31840-31859 | Msa1351780:CDS | 30.0% | |
| TATGGGTTTGAATTAGGATA+TGG | + | tig0012394:31846-31865 | Msa1351780:CDS | 30.0% | |
| AGGTTGTATTGTTTGTTTGT+AGG | - | tig0012394:32024-32043 | None:intergenic | 30.0% | |
| TTACTAAGTATTCCTGTGAA+TGG | - | tig0012394:32417-32436 | None:intergenic | 30.0% | |
| AATAAACCTGAAGAAAATCC+AGG | + | tig0012394:32435-32454 | Msa1351780:CDS | 30.0% | |
| ! | ATTAAACCTGGATTTTCTTC+AGG | - | tig0012394:32444-32463 | None:intergenic | 30.0% |
| ! | CTTTATTTACGTATGTTGTC+TGG | + | tig0012394:32939-32958 | Msa1351780:intron | 30.0% |
| ! | CATGGCTATGTTATTTAACA+TGG | + | tig0012394:33416-33435 | Msa1351780:intron | 30.0% |
| ACATGGTTGTAACATTTGTA+AGG | + | tig0012394:33433-33452 | Msa1351780:intron | 30.0% | |
| ATCAATGATTATGATTACCG+AGG | - | tig0012394:33540-33559 | None:intergenic | 30.0% | |
| TCAATACTGCTTATGATTCA+TGG | + | tig0012394:33741-33760 | Msa1351780:CDS | 30.0% | |
| AACATTGGACACAATACTAA+CGG | + | tig0012394:33854-33873 | Msa1351780:intron | 30.0% | |
| TTCTCAAGATCAAACAAGAA+TGG | + | tig0012394:34260-34279 | Msa1351780:CDS | 30.0% | |
| TGATAATACATGTCACCATT+TGG | + | tig0012394:34600-34619 | Msa1351780:CDS | 30.0% | |
| !!! | TGGAAGTGTTTTTCACTATT+TGG | + | tig0012394:34749-34768 | Msa1351780:three_prime_UTR | 30.0% |
| !!! | GGAAGTGTTTTTCACTATTT+GGG | + | tig0012394:34750-34769 | Msa1351780:three_prime_UTR | 30.0% |
| ! | TTCTGGGTTTTCATTGCAAT+AGG | + | tig0012394:31801-31820 | Msa1351780:CDS | 35.0% |
| GTTATCACCAACTTGGTTTA+TGG | + | tig0012394:31828-31847 | Msa1351780:CDS | 35.0% | |
| TTCAAACCCATAAACCAAGT+TGG | - | tig0012394:31838-31857 | None:intergenic | 35.0% | |
| TGAAGAACTCTTTCTGTTAG+AGG | + | tig0012394:31899-31918 | Msa1351780:CDS | 35.0% | |
| ATTTCCATTACCCTCAAGAA+AGG | - | tig0012394:31943-31962 | None:intergenic | 35.0% | |
| ATATTGAGAGGAAAGGAGAA+AGG | - | tig0012394:32044-32063 | None:intergenic | 35.0% | |
| !! | CAGTTGGCTTGTTAATTTAG+AGG | + | tig0012394:32148-32167 | Msa1351780:CDS | 35.0% |
| TGTAACATGCATATATGCCA+TGG | + | tig0012394:32244-32263 | Msa1351780:intron | 35.0% | |
| TAGGATTTCTAACTGTCATC+AGG | + | tig0012394:32305-32324 | Msa1351780:intron | 35.0% | |
| AGGATTTCTAACTGTCATCA+GGG | + | tig0012394:32306-32325 | Msa1351780:intron | 35.0% | |
| GTGTTTATCGCAAGAAAACA+CGG | + | tig0012394:32358-32377 | Msa1351780:CDS | 35.0% | |
| ATGAGCAACAATAACATGAG+AGG | - | tig0012394:32528-32547 | None:intergenic | 35.0% | |
| GTAAAGCTTCGTTATTGTGA+TGG | + | tig0012394:32581-32600 | Msa1351780:CDS | 35.0% | |
| TAGGTAACTGACTAACAAAC+TGG | + | tig0012394:32664-32683 | Msa1351780:intron | 35.0% | |
| CAAAAAAGGATACAGGTCTA+CGG | - | tig0012394:32776-32795 | None:intergenic | 35.0% | |
| CAAGTCATGTATCTCAACAA+TGG | - | tig0012394:32875-32894 | None:intergenic | 35.0% | |
| CACAGTGTATAATAGTAGCT+AGG | - | tig0012394:33089-33108 | None:intergenic | 35.0% | |
| ATACACTGTGATGAATTTCG+AGG | + | tig0012394:33099-33118 | Msa1351780:CDS | 35.0% | |
| AATGATGGTAGAAATGGCAT+TGG | - | tig0012394:33223-33242 | None:intergenic | 35.0% | |
| !! | AATATGTACAGTGGTGTTGT+AGG | + | tig0012394:33330-33349 | Msa1351780:CDS | 35.0% |
| !! | ATATGTACAGTGGTGTTGTA+GGG | + | tig0012394:33331-33350 | Msa1351780:CDS | 35.0% |
| TGGTATTCTTGTGATTAGTG+TGG | - | tig0012394:33369-33388 | None:intergenic | 35.0% | |
| AGGTGATTAGTACAAATCTG+TGG | - | tig0012394:33509-33528 | None:intergenic | 35.0% | |
| ATGATTATGATTACCGAGGT+AGG | - | tig0012394:33536-33555 | None:intergenic | 35.0% | |
| AAAAAGTGGTGTTCTAACAC+TGG | - | tig0012394:33717-33736 | None:intergenic | 35.0% | |
| ! | GCAGTATTGAGAAGAAAAAG+TGG | - | tig0012394:33731-33750 | None:intergenic | 35.0% |
| GACTACCAATTGACAAACTT+AGG | - | tig0012394:33778-33797 | None:intergenic | 35.0% | |
| CTTGACTGAATCTGATAACA+AGG | - | tig0012394:33999-34018 | None:intergenic | 35.0% | |
| TAAACCATGCTAAATGCACA+AGG | + | tig0012394:34069-34088 | Msa1351780:CDS | 35.0% | |
| ATACATCACCTTGCAGAAAT+TGG | - | tig0012394:34103-34122 | None:intergenic | 35.0% | |
| TTAGTACCATTCATTGCAAG+TGG | + | tig0012394:34128-34147 | Msa1351780:intron | 35.0% | |
| ! | TTTTCTCCACTTGCAATGAA+TGG | - | tig0012394:34137-34156 | None:intergenic | 35.0% |
| ! | ATGGTTTTCAGACAATTCTC+CGG | + | tig0012394:34334-34353 | Msa1351780:CDS | 35.0% |
| TTCACCTTGTTCCTAATAAC+CGG | - | tig0012394:34356-34375 | None:intergenic | 35.0% | |
| TAGGTAATTGCTTTAGCTGT+TGG | + | tig0012394:34523-34542 | Msa1351780:intron | 35.0% | |
| !!! | TTTTGATCGAGAAGGTGTTA+AGG | + | tig0012394:34555-34574 | Msa1351780:CDS | 35.0% |
| CATGTATTATCACAAGGGTA+AGG | - | tig0012394:34592-34611 | None:intergenic | 35.0% | |
| GGTGACATGTATTATCACAA+GGG | - | tig0012394:34597-34616 | None:intergenic | 35.0% | |
| TGGTGACATGTATTATCACA+AGG | - | tig0012394:34598-34617 | None:intergenic | 35.0% | |
| TGATGATCATGTACGAACTT+TGG | - | tig0012394:34638-34657 | None:intergenic | 35.0% | |
| TCGTACATGATCATCATCAA+TGG | + | tig0012394:34642-34661 | Msa1351780:three_prime_UTR | 35.0% | |
| TACATGATCATCATCAATGG+AGG | + | tig0012394:34645-34664 | Msa1351780:three_prime_UTR | 35.0% | |
| TTGATTGTCATCGGTGAAAT+TGG | + | tig0012394:34729-34748 | Msa1351780:three_prime_UTR | 35.0% | |
| GCTGCATACTTATGATGTTA+AGG | - | tig0012394:34801-34820 | None:intergenic | 35.0% | |
| !! | TTTTTGGTACATTGACGCAA+TGG | + | tig0012394:34947-34966 | Msa1351780:three_prime_UTR | 35.0% |
| AGAAACATTGTCATCGCCAA+TGG | + | tig0012394:31770-31789 | Msa1351780:exon | 40.0% | |
| ! | GCCAATGGCTAAACTTTTCT+GGG | + | tig0012394:31785-31804 | Msa1351780:exon | 40.0% |
| ACCCAGAAAAGTTTAGCCAT+TGG | - | tig0012394:31789-31808 | None:intergenic | 40.0% | |
| !! | AGGACTTGTTATCACCAACT+TGG | + | tig0012394:31821-31840 | Msa1351780:CDS | 40.0% |
| TACCATTTGCATCGTGGATA+TGG | + | tig0012394:32113-32132 | Msa1351780:CDS | 40.0% | |
| ATCCATATCCACGATGCAAA+TGG | - | tig0012394:32118-32137 | None:intergenic | 40.0% | |
| ATTTCTAACTGTCATCAGGG+AGG | + | tig0012394:32309-32328 | Msa1351780:intron | 40.0% | |
| GCGTGGATCATCATTATACA+TGG | + | tig0012394:32380-32399 | Msa1351780:CDS | 40.0% | |
| GAAAAGGAGATACCATTCAC+AGG | + | tig0012394:32402-32421 | Msa1351780:CDS | 40.0% | |
| AAGCTTCGTTATTGTGATGG+TGG | + | tig0012394:32584-32603 | Msa1351780:CDS | 40.0% | |
| AGCAGAAACTTGTAAGAGCA+AGG | + | tig0012394:32828-32847 | Msa1351780:intron | 40.0% | |
| AATTCAGAGGACAGCGAATT+TGG | + | tig0012394:32983-33002 | Msa1351780:CDS | 40.0% | |
| ATTCAGAGGACAGCGAATTT+GGG | + | tig0012394:32984-33003 | Msa1351780:CDS | 40.0% | |
| ! | GGGAATGCATTTTGCTAATC+AGG | + | tig0012394:33035-33054 | Msa1351780:CDS | 40.0% |
| AATTTCGAGGTCTCTTTCCA+AGG | + | tig0012394:33112-33131 | Msa1351780:CDS | 40.0% | |
| CACTTCACTTTAGTAGTCCT+TGG | - | tig0012394:33132-33151 | None:intergenic | 40.0% | |
| CAACACCACTGTACATATTC+CGG | - | tig0012394:33329-33348 | None:intergenic | 40.0% | |
| TAATCACCTTGATCCTACCT+CGG | + | tig0012394:33520-33539 | Msa1351780:CDS | 40.0% | |
| GAGGGAAGAAACACTGAAAA+AGG | - | tig0012394:33682-33701 | None:intergenic | 40.0% | |
| CACTGGCAATCAAATTCTGA+GGG | - | tig0012394:33700-33719 | None:intergenic | 40.0% | |
| ACACTGGCAATCAAATTCTG+AGG | - | tig0012394:33701-33720 | None:intergenic | 40.0% | |
| TACTGCTTATGATTCATGGC+AGG | + | tig0012394:33745-33764 | Msa1351780:CDS | 40.0% | |
| TGTGGCAGTAACACAAACAT+TGG | + | tig0012394:33839-33858 | Msa1351780:intron | 40.0% | |
| GACTGAATCTGATAACAAGG+AGG | - | tig0012394:33996-34015 | None:intergenic | 40.0% | |
| CCTTGCAGAAATTGGATTTG+TGG | - | tig0012394:34095-34114 | None:intergenic | 40.0% | |
| CCACAAATCCAATTTCTGCA+AGG | + | tig0012394:34092-34111 | Msa1351780:CDS | 40.0% | |
| TGAACCCTGTATTCAAGAGA+CGG | - | tig0012394:34211-34230 | None:intergenic | 40.0% | |
| AAACCATGTATCTTGCCTCT+CGG | - | tig0012394:34321-34340 | None:intergenic | 40.0% | |
| CAGACAATTCTCCGGTTATT+AGG | + | tig0012394:34342-34361 | Msa1351780:CDS | 40.0% | |
| TTCTCCGGTTATTAGGAACA+AGG | + | tig0012394:34349-34368 | Msa1351780:CDS | 40.0% | |
| !!! | GACTGGTATTTTGATCGAGA+AGG | + | tig0012394:34547-34566 | Msa1351780:CDS | 40.0% |
| TGGCTCAACTGAAAACCAAA+TGG | - | tig0012394:34618-34637 | None:intergenic | 40.0% | |
| TTCACTATTTGGGAATGCTG+AGG | + | tig0012394:34760-34779 | Msa1351780:three_prime_UTR | 40.0% | |
| ! | CGCCAATGGCTAAACTTTTC+TGG | + | tig0012394:31784-31803 | Msa1351780:exon | 45.0% |
| ACATGCAGCATCCTTTCTTG+AGG | + | tig0012394:31929-31948 | Msa1351780:CDS | 45.0% | |
| CATGCAGCATCCTTTCTTGA+GGG | + | tig0012394:31930-31949 | Msa1351780:CDS | 45.0% | |
| GCATCCTTTCTTGAGGGTAA+TGG | + | tig0012394:31936-31955 | Msa1351780:CDS | 45.0% | |
| AATGGAAATCCTCTGCTCGT+AGG | + | tig0012394:31954-31973 | Msa1351780:CDS | 45.0% | |
| AGCAGCTGCATTGTGGATAA+GGG | - | tig0012394:31985-32004 | None:intergenic | 45.0% | |
| TAGCAGCTGCATTGTGGATA+AGG | - | tig0012394:31986-32005 | None:intergenic | 45.0% | |
| ATCCACAATGCAGCTGCTAA+AGG | + | tig0012394:31987-32006 | Msa1351780:CDS | 45.0% | |
| TTGGTTTCTTGCAGTGTGCT+TGG | + | tig0012394:32073-32092 | Msa1351780:intron | 45.0% | |
| TTTCTTGCAGTGTGCTTGGA+TGG | + | tig0012394:32077-32096 | Msa1351780:intron | 45.0% | |
| TGCTTGGATGGAACATTACC+TGG | + | tig0012394:32089-32108 | Msa1351780:CDS | 45.0% | |
| TTGCATCGTGGATATGGATC+AGG | + | tig0012394:32119-32138 | Msa1351780:CDS | 45.0% | |
| ATGGATCAGGAGCAAACAGT+TGG | + | tig0012394:32132-32151 | Msa1351780:CDS | 45.0% | |
| !! | TGTGATGGTGGCTCATTTAC+TGG | + | tig0012394:32596-32615 | Msa1351780:CDS | 45.0% |
| TACTGGAGATGGTGAAGATC+AGG | + | tig0012394:32613-32632 | Msa1351780:CDS | 45.0% | |
| GAAGCAGAACTGCAATTCAG+AGG | + | tig0012394:32970-32989 | Msa1351780:CDS | 45.0% | |
| GCTAATCAGGCTCTTCTTTC+CGG | + | tig0012394:33048-33067 | Msa1351780:CDS | 45.0% | |
| TCTTCTTTCCGGATGTTCAG+CGG | + | tig0012394:33059-33078 | Msa1351780:CDS | 45.0% | |
| ! | TGAAGTGTCTTAGCGATGCA+GGG | + | tig0012394:33145-33164 | Msa1351780:CDS | 45.0% |
| ACCACTGTACATATTCCGGA+GGG | - | tig0012394:33325-33344 | None:intergenic | 45.0% | |
| TGATTACCGAGGTAGGATCA+AGG | - | tig0012394:33529-33548 | None:intergenic | 45.0% | |
| AGTGTCGTGTCAATGCTACA+TGG | + | tig0012394:33927-33946 | Msa1351780:intron | 45.0% | |
| CATTGATGCCAATAGCCATG+GGG | - | tig0012394:34044-34063 | None:intergenic | 45.0% | |
| ! | GCATTGATGCCAATAGCCAT+GGG | - | tig0012394:34045-34064 | None:intergenic | 45.0% |
| ! | TGCATTGATGCCAATAGCCA+TGG | - | tig0012394:34046-34065 | None:intergenic | 45.0% |
| TTTCGCCGTCTCTTGAATAC+AGG | + | tig0012394:34203-34222 | Msa1351780:intron | 45.0% | |
| TTCGCCGTCTCTTGAATACA+GGG | + | tig0012394:34204-34223 | Msa1351780:intron | 45.0% | |
| GTCTCTTGAATACAGGGTTC+AGG | + | tig0012394:34210-34229 | Msa1351780:intron | 45.0% | |
| ATGTATCTTGCCTCTCGGTT+TGG | - | tig0012394:34316-34335 | None:intergenic | 45.0% | |
| AAACCGAGAGGCAAGATACA+TGG | + | tig0012394:34315-34334 | Msa1351780:CDS | 45.0% | |
| TTGCTTTAGCTGTTGGAGAC+TGG | + | tig0012394:34530-34549 | Msa1351780:CDS | 45.0% | |
| CATCATAAGTATGCAGCCGT+AGG | + | tig0012394:34804-34823 | Msa1351780:three_prime_UTR | 45.0% | |
| CTCCTTTAGCAGCTGCATTG+TGG | - | tig0012394:31992-32011 | None:intergenic | 50.0% | |
| AATGCAGCTGCTAAAGGAGC+AGG | + | tig0012394:31993-32012 | Msa1351780:CDS | 50.0% | |
| CCACGATGCAAATGGTAACC+AGG | - | tig0012394:32110-32129 | None:intergenic | 50.0% | |
| CCTGGTTACCATTTGCATCG+TGG | + | tig0012394:32107-32126 | Msa1351780:CDS | 50.0% | |
| TCTAACTGTCATCAGGGAGG+TGG | + | tig0012394:32312-32331 | Msa1351780:intron | 50.0% | |
| TATCGCAAGAAAACACGGCG+TGG | + | tig0012394:32363-32382 | Msa1351780:CDS | 50.0% | |
| GGTGGCTCATTTACTGGAGA+TGG | + | tig0012394:32602-32621 | Msa1351780:CDS | 50.0% | |
| CGTATGTTGTCTGGTGAGAC+AGG | + | tig0012394:32948-32967 | Msa1351780:intron | 50.0% | |
| CTTCTTTCCGGATGTTCAGC+GGG | + | tig0012394:33060-33079 | Msa1351780:CDS | 50.0% | |
| ! | GTGAAGTGTCTTAGCGATGC+AGG | + | tig0012394:33144-33163 | Msa1351780:CDS | 50.0% |
| ACCCTCCGGAATATGTACAG+TGG | + | tig0012394:33321-33340 | Msa1351780:CDS | 50.0% | |
| CACCACTGTACATATTCCGG+AGG | - | tig0012394:33326-33345 | None:intergenic | 50.0% | |
| !! | GTGGCCTTGTGCATTTAGCA+TGG | - | tig0012394:34076-34095 | None:intergenic | 50.0% |
| ACTGTCATCAGGGAGGTGGA+TGG | + | tig0012394:32316-32335 | Msa1351780:intron | 55.0% | |
| GCGAATTTGGGCAGCTGCAA+TGG | + | tig0012394:32996-33015 | Msa1351780:CDS | 55.0% | |
| !! | CAGTGGTGTTGTAGGGATGC+AGG | + | tig0012394:33338-33357 | Msa1351780:CDS | 55.0% |
| TAGCCATGGGGATCTGCTGA+TGG | - | tig0012394:34032-34051 | None:intergenic | 55.0% | |
| CAGCAGATCCCCATGGCTAT+TGG | + | tig0012394:34033-34052 | Msa1351780:CDS | 55.0% | |
| AGGGTGAGTCCTACGAGCAG+AGG | - | tig0012394:31966-31985 | None:intergenic | 60.0% | |
| CTTTCCGGATGTTCAGCGGG+TGG | + | tig0012394:33063-33082 | Msa1351780:CDS | 60.0% | |
| TAGGCCACCCGCTGAACATC+CGG | - | tig0012394:33070-33089 | None:intergenic | 60.0% | |
| CCATGGGGATCTGCTGATGG+AGG | - | tig0012394:34029-34048 | None:intergenic | 60.0% | |
| CCTCCATCAGCAGATCCCCA+TGG | + | tig0012394:34026-34045 | Msa1351780:CDS | 60.0% | |
| TCGCTCACTGCCAAACCGAG+AGG | + | tig0012394:34303-34322 | Msa1351780:CDS | 60.0% | |
| TATCTGGCGAGCGCACCCTC+CGG | + | tig0012394:33307-33326 | Msa1351780:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0012394 | gene | 31735 | 34970 | 31735 | ID=Msa1351780;Name=Msa1351780 |
| tig0012394 | mRNA | 31735 | 34970 | 31735 | ID=Msa1351780-mRNA-1;Parent=Msa1351780;Name=Msa1351780-mRNA-1;_AED=0.16;_eAED=0.16;_QI=54|1|1|1|1|1|11|337|425 |
| tig0012394 | exon | 31735 | 32014 | 31735 | ID=Msa1351780-mRNA-1:exon:7872;Parent=Msa1351780-mRNA-1 |
| tig0012394 | exon | 32087 | 32169 | 32087 | ID=Msa1351780-mRNA-1:exon:7873;Parent=Msa1351780-mRNA-1 |
| tig0012394 | exon | 32327 | 32456 | 32327 | ID=Msa1351780-mRNA-1:exon:7874;Parent=Msa1351780-mRNA-1 |
| tig0012394 | exon | 32561 | 32634 | 32561 | ID=Msa1351780-mRNA-1:exon:7875;Parent=Msa1351780-mRNA-1 |
| tig0012394 | exon | 32970 | 33181 | 32970 | ID=Msa1351780-mRNA-1:exon:7876;Parent=Msa1351780-mRNA-1 |
| tig0012394 | exon | 33299 | 33359 | 33299 | ID=Msa1351780-mRNA-1:exon:7877;Parent=Msa1351780-mRNA-1 |
| tig0012394 | exon | 33488 | 33541 | 33488 | ID=Msa1351780-mRNA-1:exon:7878;Parent=Msa1351780-mRNA-1 |
| tig0012394 | exon | 33689 | 33766 | 33689 | ID=Msa1351780-mRNA-1:exon:7879;Parent=Msa1351780-mRNA-1 |
| tig0012394 | exon | 34008 | 34113 | 34008 | ID=Msa1351780-mRNA-1:exon:7880;Parent=Msa1351780-mRNA-1 |
| tig0012394 | exon | 34225 | 34370 | 34225 | ID=Msa1351780-mRNA-1:exon:7881;Parent=Msa1351780-mRNA-1 |
| tig0012394 | exon | 34526 | 34970 | 34526 | ID=Msa1351780-mRNA-1:exon:7882;Parent=Msa1351780-mRNA-1 |
| tig0012394 | five_prime_UTR | 31735 | 31788 | 31735 | ID=Msa1351780-mRNA-1:five_prime_utr;Parent=Msa1351780-mRNA-1 |
| tig0012394 | CDS | 31789 | 32014 | 31789 | ID=Msa1351780-mRNA-1:cds;Parent=Msa1351780-mRNA-1 |
| tig0012394 | CDS | 32087 | 32169 | 32087 | ID=Msa1351780-mRNA-1:cds;Parent=Msa1351780-mRNA-1 |
| tig0012394 | CDS | 32327 | 32456 | 32327 | ID=Msa1351780-mRNA-1:cds;Parent=Msa1351780-mRNA-1 |
| tig0012394 | CDS | 32561 | 32634 | 32561 | ID=Msa1351780-mRNA-1:cds;Parent=Msa1351780-mRNA-1 |
| tig0012394 | CDS | 32970 | 33181 | 32970 | ID=Msa1351780-mRNA-1:cds;Parent=Msa1351780-mRNA-1 |
| tig0012394 | CDS | 33299 | 33359 | 33299 | ID=Msa1351780-mRNA-1:cds;Parent=Msa1351780-mRNA-1 |
| tig0012394 | CDS | 33488 | 33541 | 33488 | ID=Msa1351780-mRNA-1:cds;Parent=Msa1351780-mRNA-1 |
| tig0012394 | CDS | 33689 | 33766 | 33689 | ID=Msa1351780-mRNA-1:cds;Parent=Msa1351780-mRNA-1 |
| tig0012394 | CDS | 34008 | 34113 | 34008 | ID=Msa1351780-mRNA-1:cds;Parent=Msa1351780-mRNA-1 |
| tig0012394 | CDS | 34225 | 34370 | 34225 | ID=Msa1351780-mRNA-1:cds;Parent=Msa1351780-mRNA-1 |
| tig0012394 | CDS | 34526 | 34633 | 34526 | ID=Msa1351780-mRNA-1:cds;Parent=Msa1351780-mRNA-1 |
| tig0012394 | three_prime_UTR | 34634 | 34970 | 34634 | ID=Msa1351780-mRNA-1:three_prime_utr;Parent=Msa1351780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
