AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1040460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1040460 MtrunA17_Chr7g0270991 96.498 257 8 1 1 257 6 261 0.0 513
Msa1040460 MtrunA17_Chr1g0193711 71.318 258 66 6 1 257 1 251 5.73e-120 342
Msa1040460 MtrunA17_Chr1g0213971 66.310 187 60 1 72 255 57 243 3.78e-89 264
Msa1040460 MtrunA17_Chr3g0104751 61.413 184 59 3 83 255 21 203 9.81e-75 226
Msa1040460 MtrunA17_Chr3g0113441 63.158 171 55 2 90 253 62 231 5.46e-72 220
Msa1040460 MtrunA17_Chr4g0038431 59.649 171 61 2 90 253 2 171 2.03e-69 211
Msa1040460 MtrunA17_Chr3g0145501 59.064 171 62 2 93 256 13 182 3.48e-67 206
Msa1040460 MtrunA17_Chr7g0274841 66.438 146 42 1 93 231 5 150 9.52e-67 204
Msa1040460 MtrunA17_Chr8g0353571 57.576 165 64 2 95 253 21 185 9.19e-63 195
Msa1040460 MtrunA17_Chr4g0045321 56.140 171 67 1 92 254 4 174 1.04e-61 198
Msa1040460 MtrunA17_Chr8g0374621 55.030 169 68 1 93 253 5 173 1.30e-60 195
Msa1040460 MtrunA17_Chr7g0260441 58.929 168 60 2 94 253 9 175 2.13e-60 201
Msa1040460 MtrunA17_Chr4g0037281 49.206 189 87 3 74 254 29 216 3.24e-58 184
Msa1040460 MtrunA17_Chr2g0321111 54.730 148 62 4 104 250 469 612 1.90e-44 158
Msa1040460 MtrunA17_Chr3g0138061 47.368 171 81 2 95 257 13 182 6.30e-40 147
Msa1040460 MtrunA17_Chr7g0266721 50.000 146 68 4 104 248 17 158 9.61e-40 135
Msa1040460 MtrunA17_Chr1g0149061 44.262 183 86 4 86 257 1 178 6.63e-39 143
Msa1040460 MtrunA17_Chr8g0351571 51.034 145 66 4 104 247 8 148 1.74e-35 124
Msa1040460 MtrunA17_Chr5g0401141 46.528 144 72 4 106 248 354 493 2.13e-30 119
Msa1040460 MtrunA17_Chr3g0122871 66.667 60 20 0 177 236 55 114 1.49e-25 97.4
Msa1040460 MtrunA17_Chr2g0288371 44.000 150 73 7 106 250 22 165 2.52e-22 95.5
Msa1040460 MtrunA17_Chr6g0484281 41.353 133 65 5 104 227 8 136 3.53e-19 86.7
Msa1040460 MtrunA17_Chr8g0357591 40.602 133 66 5 104 227 8 136 4.97e-18 83.2
Msa1040460 MtrunA17_Chr1g0199071 35.948 153 77 7 104 250 87 224 4.93e-17 77.8
Msa1040460 MtrunA17_Chr2g0305071 31.333 150 84 6 105 235 91 240 2.19e-15 74.3
Msa1040460 MtrunA17_Chr1g0163031 29.932 147 95 5 104 250 86 224 5.75e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1040460 AT3G62030.3 61.240 258 98 1 1 256 1 258 1.61e-110 319
Msa1040460 AT3G62030.1 61.004 259 98 1 1 256 1 259 3.05e-110 318
Msa1040460 AT3G62030.2 70.507 217 57 3 45 257 100 313 4.40e-107 312
Msa1040460 AT5G13120.2 65.922 179 58 1 80 255 74 252 6.80e-88 261
Msa1040460 AT5G13120.1 65.922 179 58 1 80 255 78 256 6.96e-88 261
Msa1040460 AT5G58710.1 61.497 187 60 3 76 255 23 204 8.96e-76 229
Msa1040460 AT2G29960.1 60.963 187 65 2 76 255 16 201 3.90e-75 227
Msa1040460 AT2G29960.3 60.963 187 65 2 76 255 16 201 3.90e-75 227
Msa1040460 AT2G21130.1 61.905 168 56 2 93 253 6 172 8.76e-71 215
Msa1040460 AT4G38740.1 60.714 168 58 2 93 253 5 171 1.90e-69 212
Msa1040460 AT3G56070.1 61.310 168 57 2 93 253 5 171 9.52e-69 210
Msa1040460 AT3G56070.2 61.310 168 57 2 93 253 5 171 9.52e-69 210
Msa1040460 AT2G16600.1 59.412 170 57 3 93 253 6 172 9.95e-69 210
Msa1040460 AT3G55920.1 53.731 201 75 3 72 255 29 228 5.20e-68 210
Msa1040460 AT2G29960.2 56.684 187 63 3 76 255 16 191 4.88e-66 204
Msa1040460 AT4G34870.1 55.491 173 59 3 93 253 5 171 8.87e-62 192
Msa1040460 AT2G15790.1 56.140 171 67 1 92 254 4 174 7.14e-61 196
Msa1040460 AT3G63400.2 56.000 175 68 2 86 252 1 174 7.92e-61 197
Msa1040460 AT2G38730.1 55.758 165 67 2 95 253 35 199 2.06e-59 187
Msa1040460 AT3G63400.3 56.000 175 68 2 86 252 1 174 2.41e-59 197
Msa1040460 AT3G63400.4 56.000 175 68 2 86 252 1 174 2.41e-59 197
Msa1040460 AT3G63400.1 56.000 175 68 2 86 252 1 174 2.41e-59 197
Msa1040460 AT4G34960.1 52.571 175 76 1 89 256 44 218 3.23e-59 187
Msa1040460 AT2G16600.2 54.601 163 54 3 93 253 6 150 9.34e-58 181
Msa1040460 AT4G34960.2 57.031 128 48 1 89 209 44 171 6.40e-47 154
Msa1040460 AT3G44600.1 55.405 148 61 4 104 250 483 626 1.29e-43 156
Msa1040460 AT2G36130.1 49.315 146 69 4 104 248 17 158 1.98e-39 135
Msa1040460 AT1G01940.1 49.655 145 68 4 104 247 8 148 1.16e-35 125
Msa1040460 AT4G32420.1 43.575 179 84 4 86 252 1 174 2.09e-34 131
Msa1040460 AT4G32420.5 43.575 179 84 4 86 252 1 174 2.09e-34 131
Msa1040460 AT4G32420.3 43.575 179 84 4 86 252 1 174 2.09e-34 131
Msa1040460 AT4G32420.6 43.575 179 84 4 86 252 1 174 2.09e-34 131
Msa1040460 AT4G32420.4 45.455 154 76 1 86 231 1 154 7.48e-34 129
Msa1040460 AT3G22920.1 42.442 172 79 7 93 253 5 167 6.90e-33 120
Msa1040460 AT5G67530.1 45.139 144 74 4 106 248 353 492 1.83e-30 119
Msa1040460 AT4G33060.1 44.755 143 72 6 106 245 22 160 1.09e-25 105
Msa1040460 AT1G53720.2 37.908 153 82 5 104 247 8 156 1.21e-19 87.4
Msa1040460 AT1G53720.1 37.908 153 82 5 104 247 8 156 2.73e-19 87.0
Msa1040460 AT2G47320.1 31.081 148 95 4 106 253 87 227 1.98e-14 70.9
Msa1040460 AT3G66654.4 29.677 155 83 4 104 247 88 227 4.43e-12 64.3
Msa1040460 AT3G66654.2 29.677 155 83 4 104 247 88 227 4.43e-12 64.3
Msa1040460 AT3G66654.3 29.677 155 83 4 104 247 88 227 4.43e-12 64.3
Msa1040460 AT3G66654.1 29.677 155 83 4 104 247 88 227 4.43e-12 64.3
Msa1040460 AT3G66654.5 29.677 155 83 4 104 247 88 227 4.43e-12 64.3

Find 78 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACATGCAAATCATATAAT+TGG 0.143786 7_1:+77843331 None:intergenic
AAAGCGGTACTATTTATTAT+TGG 0.202614 7_1:+77845992 None:intergenic
ATCTTTGGGCAGAATCGTTT+TGG 0.218231 7_1:-77844721 Msa1040460:CDS
GCATAAGTATCAACCATCTA+TGG 0.238764 7_1:+77843566 None:intergenic
AATTGACTACCATTGGTATT+AGG 0.256008 7_1:+77844044 None:intergenic
AATCAAAGAATTCATGATTC+AGG 0.260889 7_1:-77844496 Msa1040460:CDS
AAGCGGTACTATTTATTATT+GGG 0.299815 7_1:+77845993 None:intergenic
TAGCCAAGATGTGTTGTCTA+TGG 0.302130 7_1:-77845704 Msa1040460:CDS
ACCTTTGACTCAAGAAGCTT+TGG 0.335511 7_1:+77845914 None:intergenic
AACATGCAAATCATATAATT+GGG 0.349416 7_1:+77843332 None:intergenic
AGAAGCTTTGGTTGGTTTGT+TGG 0.354893 7_1:+77845926 None:intergenic
TCACATACCGTGTCACAAAT+TGG 0.359007 7_1:-77845673 Msa1040460:CDS
CTGCAGAATGGATTGTCATT+TGG 0.361297 7_1:-77843475 Msa1040460:three_prime_UTR
GACAATCGACATGTCGTGTT+TGG 0.370445 7_1:-77843696 Msa1040460:CDS
CACCTAACTGCAACAAGAAA+TGG 0.380372 7_1:+77845880 None:intergenic
ACCGGTGGAGCTAGTATCTA+TGG 0.385843 7_1:-77844286 Msa1040460:CDS
CATTCTGCAGCAACCGATGA+TGG 0.413214 7_1:+77843488 None:intergenic
GAAACATTTGGTAGTCACTT+TGG 0.413346 7_1:+77844767 None:intergenic
TTCCATTGGCTGCAGGGAAC+CGG 0.414205 7_1:-77844304 Msa1040460:intron
TAAAATCACATGTTGCTTTG+AGG 0.423621 7_1:-77845630 Msa1040460:CDS
GTGTTTGGACATGTTATTGA+TGG 0.424405 7_1:-77843681 Msa1040460:CDS
TGTTTCTTTGACGTAGAAGC+TGG 0.427261 7_1:-77844750 Msa1040460:CDS
AATAATAAATAGTACCGCTT+TGG 0.427961 7_1:-77845990 Msa1040460:five_prime_UTR
AATTTCCGTGCTTTGTGCAC+AGG 0.435339 7_1:-77844663 Msa1040460:intron
ATCAAAGAATTCATGATTCA+GGG 0.448304 7_1:-77844495 Msa1040460:CDS
TGTGAGGACACTTGAGTCTC+AGG 0.450710 7_1:-77843649 Msa1040460:CDS
TTCTACGTCAAAGAAACATT+TGG 0.450882 7_1:+77844755 None:intergenic
AACCATTTCTTGTTGCAGTT+AGG 0.451429 7_1:-77845882 Msa1040460:five_prime_UTR
GTGCTTACCGAGTTACTGTT+TGG 0.458334 7_1:+77843260 None:intergenic
GAACCATAGACAACACATCT+TGG 0.462350 7_1:+77845701 None:intergenic
TAATCTTGTGCAGGAGAGAA+AGG 0.477763 7_1:-77844552 Msa1040460:intron
TTCTTTGATTATACGATGGA+AGG 0.485601 7_1:+77844509 None:intergenic
CATCATCGGTTGCTGCAGAA+TGG 0.488518 7_1:-77843487 Msa1040460:three_prime_UTR
TTCTTGTTGCAGTTAGGTGA+TGG 0.492720 7_1:-77845876 Msa1040460:exon
TGTGGAGAACTGCCCATAGA+TGG 0.494631 7_1:-77843579 Msa1040460:CDS
GCAGTGAAGCATGTTGGTCC+TGG 0.495639 7_1:-77844092 Msa1040460:intron
TTTAGAATGTTTCCCATCAT+CGG 0.499977 7_1:-77843501 Msa1040460:three_prime_UTR
GAGTGAAAATTGTACTCAAA+CGG 0.500982 7_1:+77843524 None:intergenic
CAAGATCAATTACATATAGT+AGG 0.501803 7_1:-77845582 Msa1040460:CDS
TGGACATGTTATTGATGGAA+TGG 0.518793 7_1:-77843676 Msa1040460:CDS
ACCAAAGCTTCTTGAGTCAA+AGG 0.519131 7_1:-77845915 Msa1040460:five_prime_UTR
GTTTCTTTGACGTAGAAGCT+GGG 0.521245 7_1:-77844749 Msa1040460:CDS
TTGACTCAAGAAGCTTTGGT+TGG 0.534342 7_1:+77845918 None:intergenic
CATTGGCTGCAGGGAACCGG+TGG 0.542546 7_1:-77844301 Msa1040460:intron
ATTCTGCAGCAACCGATGAT+GGG 0.550770 7_1:+77843489 None:intergenic
ACTACCATTGGTATTAGGAC+CGG 0.552266 7_1:+77844049 None:intergenic
CAAACCTGAAAATGAGAAAG+TGG 0.556937 7_1:+77845815 None:intergenic
TAGATGGTTGATACTTATGC+GGG 0.564926 7_1:-77843563 Msa1040460:exon
TTTGCCATGCTCAAAACTCC+AGG 0.566786 7_1:+77844074 None:intergenic
ATGTGTTGTCTATGGTTCAA+AGG 0.570074 7_1:-77845696 Msa1040460:CDS
GCTTGCCTGTGCACAAAGCA+CGG 0.576315 7_1:+77844658 None:intergenic
CCTTGCAGAATCGTTAATTG+TGG 0.578481 7_1:-77843597 Msa1040460:CDS
AGATTGAAGCAGTTGAGTTG+AGG 0.584496 7_1:+77845844 None:intergenic
ACCATAGATACTAGCTCCAC+CGG 0.585192 7_1:+77844285 None:intergenic
CCACAATTAACGATTCTGCA+AGG 0.598585 7_1:+77843597 None:intergenic
TGTGCAGGAGAGAAAGGATA+CGG 0.600737 7_1:-77844546 Msa1040460:intron
CATAAGTATCAACCATCTAT+GGG 0.602479 7_1:+77843567 None:intergenic
CTTCTTGCAGTGAAGCATGT+TGG 0.605444 7_1:-77844098 Msa1040460:intron
ACATGCAAATCATATAATTG+GGG 0.608394 7_1:+77843333 None:intergenic
ACTGTAACCAATTTGTGACA+CGG 0.612206 7_1:+77845666 None:intergenic
TGAATTCTTTGATTATACGA+TGG 0.620498 7_1:+77844505 None:intergenic
GAGAAAGGATACGGTTACAA+AGG 0.621131 7_1:-77844537 Msa1040460:CDS
GACGAATATTCTCGCCAAAG+CGG 0.622225 7_1:+77845976 None:intergenic
ACTAATACCAAACAGTAACT+CGG 0.623902 7_1:-77843267 Msa1040460:three_prime_UTR
TTTCTTTGACGTAGAAGCTG+GGG 0.628424 7_1:-77844748 Msa1040460:CDS
TTCTTTGACGTAGAAGCTGG+GGG 0.630560 7_1:-77844747 Msa1040460:CDS
TTGAGTCTCAGGAAACAAGC+AGG 0.634425 7_1:-77843638 Msa1040460:CDS
CAGGGAGGAGACTTCACTGA+GGG 0.643258 7_1:-77844477 Msa1040460:CDS
CTAAACATGGACTAGTCATG+AGG 0.657365 7_1:+77843305 None:intergenic
AATGCCGGTCCTAATACCAA+TGG 0.661326 7_1:-77844053 Msa1040460:CDS
ATAGATGGTTGATACTTATG+CGG 0.663955 7_1:-77843564 Msa1040460:exon
TTGATGGAATGGATGTTGTG+AGG 0.678873 7_1:-77843665 Msa1040460:CDS
GAAACTTTAGAAACTAAACA+TGG 0.682882 7_1:+77843292 None:intergenic
AAACCTGAAAATGAGAAAGT+GGG 0.705584 7_1:+77845816 None:intergenic
TCTTGCTCCAAATTGTTGCG+TGG 0.716266 7_1:+77845600 None:intergenic
ACATGTCGATTGTCTAACCA+CGG 0.718954 7_1:+77843705 None:intergenic
AAAGAATTCATGATTCAGGG+AGG 0.735053 7_1:-77844492 Msa1040460:CDS
TCAGGGAGGAGACTTCACTG+AGG 0.753671 7_1:-77844478 Msa1040460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTCAATATATATTATTGA+CGG + chr7_1:77843948-77843967 None:intergenic 10.0%
!!! AAAATGTAAGTTTTTCATTT+TGG - chr7_1:77843734-77843753 Msa1040460:intron 15.0%
!! ATAAAAAAATCATTTCAGAT+AGG + chr7_1:77844282-77844301 None:intergenic 15.0%
!!! GTGTTGAAAATAAATTTTTT+AGG + chr7_1:77845148-77845167 None:intergenic 15.0%
!! GTTATATTTGAATATTAGAT+TGG - chr7_1:77845428-77845447 Msa1040460:intron 15.0%
!! GATTAATGAACAAAAACAAT+TGG + chr7_1:77843505-77843524 None:intergenic 20.0%
!!! AATGTTTGTTTGTTTTTTTC+AGG - chr7_1:77843531-77843550 Msa1040460:three_prime_UTR 20.0%
!!! ATGTTTGTTTGTTTTTTTCA+GGG - chr7_1:77843532-77843551 Msa1040460:three_prime_UTR 20.0%
!!! AAATGAGTAAATAGTCATTT+TGG - chr7_1:77843890-77843909 Msa1040460:intron 20.0%
!! ACTTACTTCTGTAATTTATA+AGG - chr7_1:77844217-77844236 Msa1040460:intron 20.0%
!!! ATGGTTTTATTACTGTTATT+AGG - chr7_1:77844460-77844479 Msa1040460:intron 20.0%
!!! TAACATAGCATTTTAAAGTT+TGG - chr7_1:77844684-77844703 Msa1040460:CDS 20.0%
!! CATAGAAACAAATATAACAA+AGG + chr7_1:77844862-77844881 None:intergenic 20.0%
!!! TTAATTACACTGTTTTAAAC+TGG + chr7_1:77845122-77845141 None:intergenic 20.0%
!! AATAAAAAATTGACTACCAT+TGG + chr7_1:77845231-77845250 None:intergenic 20.0%
!!! ATTTTTTATTTGCACTGTTA+AGG - chr7_1:77845241-77845260 Msa1040460:intron 20.0%
!!! AGTTTTGAAGTAAAAATATC+AGG + chr7_1:77845284-77845303 None:intergenic 20.0%
!! AACATGCAAATCATATAATT+GGG + chr7_1:77845936-77845955 None:intergenic 20.0%
!! AAACATGCAAATCATATAAT+TGG + chr7_1:77845937-77845956 None:intergenic 20.0%
! AAGCGGTACTATTTATTATT+GGG + chr7_1:77843275-77843294 None:intergenic 25.0%
! AAAGCGGTACTATTTATTAT+TGG + chr7_1:77843276-77843295 None:intergenic 25.0%
! AATAATAAATAGTACCGCTT+TGG - chr7_1:77843275-77843294 Msa1040460:three_prime_UTR 25.0%
! CAAGATCAATTACATATAGT+AGG - chr7_1:77843683-77843702 Msa1040460:CDS 25.0%
!!! GTTTTAAAACGAGATTGTTA+TGG + chr7_1:77843852-77843871 None:intergenic 25.0%
! GTCCATAAAATTACTAACAA+AGG - chr7_1:77844079-77844098 Msa1040460:CDS 25.0%
!! GTCCTTTGTTAGTAATTTTA+TGG + chr7_1:77844084-77844103 None:intergenic 25.0%
! TTGTTAATCACAAAAATCGT+TGG - chr7_1:77844380-77844399 Msa1040460:intron 25.0%
! TGAATTCTTTGATTATACGA+TGG + chr7_1:77844763-77844782 None:intergenic 25.0%
! AATCAAAGAATTCATGATTC+AGG - chr7_1:77844769-77844788 Msa1040460:CDS 25.0%
! ATCAAAGAATTCATGATTCA+GGG - chr7_1:77844770-77844789 Msa1040460:CDS 25.0%
!!! TGGTTTTTAAAATTTCTCCT+TGG - chr7_1:77845088-77845107 Msa1040460:intron 25.0%
! GCTTAAAAATCAATAATCAC+TGG - chr7_1:77845345-77845364 Msa1040460:intron 25.0%
! AAAAATCAATAATCACTGGT+TGG - chr7_1:77845349-77845368 Msa1040460:intron 25.0%
! TGGTTGTTTATTTACATGAT+TGG - chr7_1:77845369-77845388 Msa1040460:intron 25.0%
! CTTAGCATATACAGAAAATA+AGG + chr7_1:77845462-77845481 None:intergenic 25.0%
! ACATGCAAATCATATAATTG+GGG + chr7_1:77845935-77845954 None:intergenic 25.0%
!! GAAACTTTAGAAACTAAACA+TGG + chr7_1:77845976-77845995 None:intergenic 25.0%
AAACCTGAAAATGAGAAAGT+GGG + chr7_1:77843452-77843471 None:intergenic 30.0%
!!! ATTTTCAGGTTTGCACAAAT+GGG - chr7_1:77843460-77843479 Msa1040460:three_prime_UTR 30.0%
!! TAAAATCACATGTTGCTTTG+AGG - chr7_1:77843635-77843654 Msa1040460:CDS 30.0%
AAGGATGTTATGTTATGACA+TGG - chr7_1:77843796-77843815 Msa1040460:intron 30.0%
AGGATGTTATGTTATGACAT+GGG - chr7_1:77843797-77843816 Msa1040460:intron 30.0%
! TTTTGGTCCTTAAATGTTTG+AGG - chr7_1:77843907-77843926 Msa1040460:intron 30.0%
TTTGGTCCTTAAATGTTTGA+GGG - chr7_1:77843908-77843927 Msa1040460:intron 30.0%
TACTAACAAAGGACACATTT+AGG - chr7_1:77844090-77844109 Msa1040460:CDS 30.0%
ACTAACAAAGGACACATTTA+GGG - chr7_1:77844091-77844110 Msa1040460:CDS 30.0%
GGACGTTTATTATCTTTACA+TGG - chr7_1:77844441-77844460 Msa1040460:intron 30.0%
TTCTACGTCAAAGAAACATT+TGG + chr7_1:77844513-77844532 None:intergenic 30.0%
! CGGAAATTTTCAACTGTTTT+AGG + chr7_1:77844590-77844609 None:intergenic 30.0%
! ATCAAAGGTGCAGAAAAATA+TGG + chr7_1:77844635-77844654 None:intergenic 30.0%
CACATTCAAAAAAGTAATCC+AGG + chr7_1:77844664-77844683 None:intergenic 30.0%
TTCTTTGATTATACGATGGA+AGG + chr7_1:77844759-77844778 None:intergenic 30.0%
CCTTCATTGAAACAAATACA+TGG + chr7_1:77844911-77844930 None:intergenic 30.0%
CCATGTATTTGTTTCAATGA+AGG - chr7_1:77844908-77844927 Msa1040460:intron 30.0%
!! CTAGATTTTTAGATAGTGCT+TGG - chr7_1:77845068-77845087 Msa1040460:intron 30.0%
TTAAACTGGAATTAAAGCCA+AGG + chr7_1:77845108-77845127 None:intergenic 30.0%
AATTGACTACCATTGGTATT+AGG + chr7_1:77845224-77845243 None:intergenic 30.0%
CATAAGTATCAACCATCTAT+GGG + chr7_1:77845701-77845720 None:intergenic 30.0%
! ATAGATGGTTGATACTTATG+CGG - chr7_1:77845701-77845720 Msa1040460:CDS 30.0%
GAGTGAAAATTGTACTCAAA+CGG + chr7_1:77845744-77845763 None:intergenic 30.0%
! TTTAGAATGTTTCCCATCAT+CGG - chr7_1:77845764-77845783 Msa1040460:intron 30.0%
AACCATTTCTTGTTGCAGTT+AGG - chr7_1:77843383-77843402 Msa1040460:three_prime_UTR 35.0%
CAAACCTGAAAATGAGAAAG+TGG + chr7_1:77843453-77843472 None:intergenic 35.0%
!!! CATTTTCAGGTTTGCACAAA+TGG - chr7_1:77843459-77843478 Msa1040460:three_prime_UTR 35.0%
!!! TTTTCAGGTTTGCACAAATG+GGG - chr7_1:77843461-77843480 Msa1040460:three_prime_UTR 35.0%
ATGTGTTGTCTATGGTTCAA+AGG - chr7_1:77843569-77843588 Msa1040460:exon 35.0%
ACTGTAACCAATTTGTGACA+CGG + chr7_1:77843602-77843621 None:intergenic 35.0%
GTTAGTACAATAATTGTCCC+TGG - chr7_1:77843762-77843781 Msa1040460:intron 35.0%
TTGGTCCTTAAATGTTTGAG+GGG - chr7_1:77843909-77843928 Msa1040460:intron 35.0%
GTATCCTTCGTTTGTAACAT+TGG - chr7_1:77843982-77844001 Msa1040460:intron 35.0%
AGAACCAATGTTACAAACGA+AGG + chr7_1:77843989-77844008 None:intergenic 35.0%
!! ATTTTGATCCCAAATGTGTG+AGG + chr7_1:77844157-77844176 None:intergenic 35.0%
CTGTGTTGTGATTAAGATGT+TGG - chr7_1:77844420-77844439 Msa1040460:intron 35.0%
! GAAACATTTGGTAGTCACTT+TGG + chr7_1:77844501-77844520 None:intergenic 35.0%
TAATCCAGGTACAAGATCAA+AGG + chr7_1:77844650-77844669 None:intergenic 35.0%
AAAGAATTCATGATTCAGGG+AGG - chr7_1:77844773-77844792 Msa1040460:CDS 35.0%
TGAAACAAATACATGGCAAG+TGG + chr7_1:77844904-77844923 None:intergenic 35.0%
CACTCAAAATGTGTTTCCAT+TGG - chr7_1:77844947-77844966 Msa1040460:intron 35.0%
GTGTTTGGACATGTTATTGA+TGG - chr7_1:77845584-77845603 Msa1040460:CDS 35.0%
TGGACATGTTATTGATGGAA+TGG - chr7_1:77845589-77845608 Msa1040460:CDS 35.0%
GCATAAGTATCAACCATCTA+TGG + chr7_1:77845702-77845721 None:intergenic 35.0%
! TAGATGGTTGATACTTATGC+GGG - chr7_1:77845702-77845721 Msa1040460:CDS 35.0%
!! AGAAGCTTTGGTTGGTTTGT+TGG + chr7_1:77843342-77843361 None:intergenic 40.0%
! TTGACTCAAGAAGCTTTGGT+TGG + chr7_1:77843350-77843369 None:intergenic 40.0%
ACCAAAGCTTCTTGAGTCAA+AGG - chr7_1:77843350-77843369 Msa1040460:three_prime_UTR 40.0%
ACCTTTGACTCAAGAAGCTT+TGG + chr7_1:77843354-77843373 None:intergenic 40.0%
CACCTAACTGCAACAAGAAA+TGG + chr7_1:77843388-77843407 None:intergenic 40.0%
TTCTTGTTGCAGTTAGGTGA+TGG - chr7_1:77843389-77843408 Msa1040460:three_prime_UTR 40.0%
! AGATTGAAGCAGTTGAGTTG+AGG + chr7_1:77843424-77843443 None:intergenic 40.0%
! CAACCCACTTTCTCATTTTC+AGG - chr7_1:77843446-77843465 Msa1040460:three_prime_UTR 40.0%
! GTTTGCACAAATGGGGTTTT+GGG - chr7_1:77843468-77843487 Msa1040460:three_prime_UTR 40.0%
TAGCCAAGATGTGTTGTCTA+TGG - chr7_1:77843561-77843580 Msa1040460:exon 40.0%
GAACCATAGACAACACATCT+TGG + chr7_1:77843567-77843586 None:intergenic 40.0%
TCACATACCGTGTCACAAAT+TGG - chr7_1:77843592-77843611 Msa1040460:CDS 40.0%
! TTTTCTGCCACGCAACAATT+TGG - chr7_1:77843658-77843677 Msa1040460:CDS 40.0%
ATCCTTCAACAACATCTCCA+GGG + chr7_1:77843782-77843801 None:intergenic 40.0%
GACAACCCCTCAAACATTTA+AGG + chr7_1:77843917-77843936 None:intergenic 40.0%
ACTTTAGTGCCTCACACATT+TGG - chr7_1:77844145-77844164 Msa1040460:intron 40.0%
CTTTAGTGCCTCACACATTT+GGG - chr7_1:77844146-77844165 Msa1040460:intron 40.0%
TGTTTCTTTGACGTAGAAGC+TGG - chr7_1:77844515-77844534 Msa1040460:CDS 40.0%
GTTTCTTTGACGTAGAAGCT+GGG - chr7_1:77844516-77844535 Msa1040460:CDS 40.0%
TTTCTTTGACGTAGAAGCTG+GGG - chr7_1:77844517-77844536 Msa1040460:CDS 40.0%
! ATCTTTGGGCAGAATCGTTT+TGG - chr7_1:77844544-77844563 Msa1040460:intron 40.0%
! TCTTTGGGCAGAATCGTTTT+GGG - chr7_1:77844545-77844564 Msa1040460:intron 40.0%
!! AGAATCGTTTTGGGCTTGTT+TGG - chr7_1:77844554-77844573 Msa1040460:intron 40.0%
TGGCTTCAATAATCTTGTGC+AGG - chr7_1:77844704-77844723 Msa1040460:CDS 40.0%
TAATCTTGTGCAGGAGAGAA+AGG - chr7_1:77844713-77844732 Msa1040460:CDS 40.0%
GAGAAAGGATACGGTTACAA+AGG - chr7_1:77844728-77844747 Msa1040460:CDS 40.0%
AACATGCAACAGAGACATAC+AGG + chr7_1:77845031-77845050 None:intergenic 40.0%
ACTACCATTGGTATTAGGAC+CGG + chr7_1:77845219-77845238 None:intergenic 40.0%
CATGATTGGAAAGCTCACTA+TGG - chr7_1:77845383-77845402 Msa1040460:intron 40.0%
! ATTTTATGATGCAGACTCCG+TGG - chr7_1:77845543-77845562 Msa1040460:intron 40.0%
! ACATGTCGATTGTCTAACCA+CGG + chr7_1:77845563-77845582 None:intergenic 40.0%
TTGATGGAATGGATGTTGTG+AGG - chr7_1:77845600-77845619 Msa1040460:CDS 40.0%
! CGATTCTGCAAGGCTTTTTA+GGG + chr7_1:77845661-77845680 None:intergenic 40.0%
! ACGATTCTGCAAGGCTTTTT+AGG + chr7_1:77845662-77845681 None:intergenic 40.0%
CCACAATTAACGATTCTGCA+AGG + chr7_1:77845671-77845690 None:intergenic 40.0%
CCTTGCAGAATCGTTAATTG+TGG - chr7_1:77845668-77845687 Msa1040460:CDS 40.0%
!! CTGCAGAATGGATTGTCATT+TGG - chr7_1:77845790-77845809 Msa1040460:intron 40.0%
!! CTAAACATGGACTAGTCATG+AGG + chr7_1:77845963-77845982 None:intergenic 40.0%
GACGAATATTCTCGCCAAAG+CGG + chr7_1:77843292-77843311 None:intergenic 45.0%
! GGTTTGCACAAATGGGGTTT+TGG - chr7_1:77843467-77843486 Msa1040460:three_prime_UTR 45.0%
TCTTGCTCCAAATTGTTGCG+TGG + chr7_1:77843668-77843687 None:intergenic 45.0%
CATCCTTCAACAACATCTCC+AGG + chr7_1:77843783-77843802 None:intergenic 45.0%
TTCTTTGACGTAGAAGCTGG+GGG - chr7_1:77844518-77844537 Msa1040460:CDS 45.0%
AATTTCCGTGCTTTGTGCAC+AGG - chr7_1:77844602-77844621 Msa1040460:intron 45.0%
TGCACCTTTGATCTTGTACC+TGG - chr7_1:77844643-77844662 Msa1040460:intron 45.0%
TGTGCAGGAGAGAAAGGATA+CGG - chr7_1:77844719-77844738 Msa1040460:CDS 45.0%
! AATGTGTTTCCATTGGCTGC+AGG - chr7_1:77844954-77844973 Msa1040460:intron 45.0%
! ATGTGTTTCCATTGGCTGCA+GGG - chr7_1:77844955-77844974 Msa1040460:intron 45.0%
ACCATAGATACTAGCTCCAC+CGG + chr7_1:77844983-77845002 None:intergenic 45.0%
CTTCTTGCAGTGAAGCATGT+TGG - chr7_1:77845167-77845186 Msa1040460:intron 45.0%
TTTGCCATGCTCAAAACTCC+AGG + chr7_1:77845194-77845213 None:intergenic 45.0%
!! GTTTTGAGCATGGCAAATGC+CGG - chr7_1:77845197-77845216 Msa1040460:intron 45.0%
AATGCCGGTCCTAATACCAA+TGG - chr7_1:77845212-77845231 Msa1040460:intron 45.0%
TTGGAAAGCTCACTATGGCA+TGG - chr7_1:77845388-77845407 Msa1040460:intron 45.0%
GACAATCGACATGTCGTGTT+TGG - chr7_1:77845569-77845588 Msa1040460:CDS 45.0%
TTGAGTCTCAGGAAACAAGC+AGG - chr7_1:77845627-77845646 Msa1040460:CDS 45.0%
ATTCTGCAGCAACCGATGAT+GGG + chr7_1:77845779-77845798 None:intergenic 45.0%
GTCCCTGGAGATGTTGTTGA+AGG - chr7_1:77843777-77843796 Msa1040460:intron 50.0%
AGAAGCTGGGGGTCAATCTT+TGG - chr7_1:77844529-77844548 Msa1040460:CDS 50.0%
GAAGCTGGGGGTCAATCTTT+GGG - chr7_1:77844530-77844549 Msa1040460:CDS 50.0%
!! CGTTTTGGGCTTGTTTGGAG+AGG - chr7_1:77844559-77844578 Msa1040460:intron 50.0%
ACCGGTGGAGCTAGTATCTA+TGG - chr7_1:77844979-77844998 Msa1040460:intron 50.0%
!!! TGGTCCTGGAGTTTTGAGCA+TGG - chr7_1:77845187-77845206 Msa1040460:intron 50.0%
TGTGAGGACACTTGAGTCTC+AGG - chr7_1:77845616-77845635 Msa1040460:CDS 50.0%
TGTGGAGAACTGCCCATAGA+TGG - chr7_1:77845686-77845705 Msa1040460:CDS 50.0%
CATTCTGCAGCAACCGATGA+TGG + chr7_1:77845780-77845799 None:intergenic 50.0%
! CATCATCGGTTGCTGCAGAA+TGG - chr7_1:77845778-77845797 Msa1040460:intron 50.0%
GCTTGCCTGTGCACAAAGCA+CGG + chr7_1:77844610-77844629 None:intergenic 55.0%
TCAGGGAGGAGACTTCACTG+AGG - chr7_1:77844787-77844806 Msa1040460:intron 55.0%
CAGGGAGGAGACTTCACTGA+GGG - chr7_1:77844788-77844807 Msa1040460:intron 55.0%
! TTCCATTGGCTGCAGGGAAC+CGG - chr7_1:77844961-77844980 Msa1040460:intron 55.0%
GCAGTGAAGCATGTTGGTCC+TGG - chr7_1:77845173-77845192 Msa1040460:intron 55.0%
!! CACCGGTTCCCTGCAGCCAA+TGG + chr7_1:77844966-77844985 None:intergenic 65.0%
! CATTGGCTGCAGGGAACCGG+TGG - chr7_1:77844964-77844983 Msa1040460:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 77843267 77846020 77843267 ID=Msa1040460;Name=Msa1040460
chr7_1 mRNA 77843267 77846020 77843267 ID=Msa1040460-mRNA-1;Parent=Msa1040460;Name=Msa1040460-mRNA-1;_AED=0.07;_eAED=0.07;_QI=141|1|1|1|1|1|7|308|257
chr7_1 exon 77843267 77843730 77843267 ID=Msa1040460-mRNA-1:exon:20662;Parent=Msa1040460-mRNA-1
chr7_1 exon 77844025 77844110 77844025 ID=Msa1040460-mRNA-1:exon:20661;Parent=Msa1040460-mRNA-1
chr7_1 exon 77844257 77844311 77844257 ID=Msa1040460-mRNA-1:exon:20660;Parent=Msa1040460-mRNA-1
chr7_1 exon 77844473 77844561 77844473 ID=Msa1040460-mRNA-1:exon:20659;Parent=Msa1040460-mRNA-1
chr7_1 exon 77844664 77844805 77844664 ID=Msa1040460-mRNA-1:exon:20658;Parent=Msa1040460-mRNA-1
chr7_1 exon 77845549 77845734 77845549 ID=Msa1040460-mRNA-1:exon:20657;Parent=Msa1040460-mRNA-1
chr7_1 exon 77845820 77846020 77845820 ID=Msa1040460-mRNA-1:exon:20656;Parent=Msa1040460-mRNA-1
chr7_1 five_prime_UTR 77845880 77846020 77845880 ID=Msa1040460-mRNA-1:five_prime_utr;Parent=Msa1040460-mRNA-1
chr7_1 CDS 77845820 77845879 77845820 ID=Msa1040460-mRNA-1:cds;Parent=Msa1040460-mRNA-1
chr7_1 CDS 77845549 77845734 77845549 ID=Msa1040460-mRNA-1:cds;Parent=Msa1040460-mRNA-1
chr7_1 CDS 77844664 77844805 77844664 ID=Msa1040460-mRNA-1:cds;Parent=Msa1040460-mRNA-1
chr7_1 CDS 77844473 77844561 77844473 ID=Msa1040460-mRNA-1:cds;Parent=Msa1040460-mRNA-1
chr7_1 CDS 77844257 77844311 77844257 ID=Msa1040460-mRNA-1:cds;Parent=Msa1040460-mRNA-1
chr7_1 CDS 77844025 77844110 77844025 ID=Msa1040460-mRNA-1:cds;Parent=Msa1040460-mRNA-1
chr7_1 CDS 77843575 77843730 77843575 ID=Msa1040460-mRNA-1:cds;Parent=Msa1040460-mRNA-1
chr7_1 three_prime_UTR 77843267 77843574 77843267 ID=Msa1040460-mRNA-1:three_prime_utr;Parent=Msa1040460-mRNA-1
Gene Sequence

>Msa1040460

ATGGCGTTTTCATCCTCAACTCAACTGCTTCAATCTCACAACCCACTTTCTCATTTTCAGGGTAATTTTAGCCAAGATGTGTTGTCTATGGTTCAAAGGTCACATACCGTGTCACAAATTGGTTACAGTAAATCATTGTCATTAAAATCACATGTTGCTTTGAGGTTTTCTGCCACGCAACAATTTGGAGCAAGATCAATTACATATAGTAGGAGAATCACATGTGCAGCTGCTGCTTCAGAAAATGTTCAAGAGCTGCAAGCCAAAGTGACTACCAAATGTTTCTTTGACGTAGAAGCTGGGGGTCAATCTTTGGGCAGAATCGTTTTGGGCTTGTTTGGAGAGGTTGCTCCTAAAACAGTTGAAAATTTCCGTGCTTTGTGCACAGGAGAGAAAGGATACGGTTACAAAGGATGCTCCTTCCATCGTATAATCAAAGAATTCATGATTCAGGGAGGAGACTTCACTGAGGGAAATGGAACCGGTGGAGCTAGTATCTATGGTTCTAGTTTCGAAGATGAGAGTTTTGCCTTGAAGCATGTTGGTCCTGGAGTTTTGAGCATGGCAAATGCCGGTCCTAATACCAATGGTAGTCAATTTTTTATTTGCACTGTTAAGACTCCGTGGTTAGACAATCGACATGTCGTGTTTGGACATGTTATTGATGGAATGGATGTTGTGAGGACACTTGAGTCTCAGGAAACAAGCAGGTTAGATATCCCTAAAAAGCCTTGCAGAATCGTTAATTGTGGAGAACTGCCCATAGATGGTTGA

Protein sequence

>Msa1040460

MAFSSSTQLLQSHNPLSHFQGNFSQDVLSMVQRSHTVSQIGYSKSLSLKSHVALRFSATQQFGARSITYSRRITCAAAASENVQELQAKVTTKCFFDVEAGGQSLGRIVLGLFGEVAPKTVENFRALCTGEKGYGYKGCSFHRIIKEFMIQGGDFTEGNGTGGASIYGSSFEDESFALKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRTLESQETSRLDIPKKPCRIVNCGELPIDG*