Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1040460 | XP_003626095.2 | 96.498 | 257 | 8 | 1 | 1 | 257 | 6 | 261 | 0.0 | 513 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1040460 | sp|Q41651|CYPB_VICFA | 69.380 | 258 | 68 | 4 | 1 | 257 | 1 | 248 | 1.37e-121 | 349 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1040460 | G7KVH0 | 96.498 | 257 | 8 | 1 | 1 | 257 | 6 | 261 | 0.0 | 513 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0715110 | Msa1040460 | 0.800910 | 1.154792e-48 | -8.615850e-47 |
Msa0398640 | Msa1040460 | 0.807037 | 6.147205e-50 | -8.615850e-47 |
Msa0460930 | Msa1040460 | 0.803511 | 3.366600e-49 | -8.615850e-47 |
Msa1040460 | Msa1083210 | 0.890602 | 8.493948e-74 | -8.615850e-47 |
Msa1040460 | Msa1185540 | 0.804328 | 2.277371e-49 | -8.615850e-47 |
Msa0506890 | Msa1040460 | 0.808619 | 2.833879e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1040460 | MtrunA17_Chr7g0270991 | 96.498 | 257 | 8 | 1 | 1 | 257 | 6 | 261 | 0.0 | 513 |
Msa1040460 | MtrunA17_Chr1g0193711 | 71.318 | 258 | 66 | 6 | 1 | 257 | 1 | 251 | 5.73e-120 | 342 |
Msa1040460 | MtrunA17_Chr1g0213971 | 66.310 | 187 | 60 | 1 | 72 | 255 | 57 | 243 | 3.78e-89 | 264 |
Msa1040460 | MtrunA17_Chr3g0104751 | 61.413 | 184 | 59 | 3 | 83 | 255 | 21 | 203 | 9.81e-75 | 226 |
Msa1040460 | MtrunA17_Chr3g0113441 | 63.158 | 171 | 55 | 2 | 90 | 253 | 62 | 231 | 5.46e-72 | 220 |
Msa1040460 | MtrunA17_Chr4g0038431 | 59.649 | 171 | 61 | 2 | 90 | 253 | 2 | 171 | 2.03e-69 | 211 |
Msa1040460 | MtrunA17_Chr3g0145501 | 59.064 | 171 | 62 | 2 | 93 | 256 | 13 | 182 | 3.48e-67 | 206 |
Msa1040460 | MtrunA17_Chr7g0274841 | 66.438 | 146 | 42 | 1 | 93 | 231 | 5 | 150 | 9.52e-67 | 204 |
Msa1040460 | MtrunA17_Chr8g0353571 | 57.576 | 165 | 64 | 2 | 95 | 253 | 21 | 185 | 9.19e-63 | 195 |
Msa1040460 | MtrunA17_Chr4g0045321 | 56.140 | 171 | 67 | 1 | 92 | 254 | 4 | 174 | 1.04e-61 | 198 |
Msa1040460 | MtrunA17_Chr8g0374621 | 55.030 | 169 | 68 | 1 | 93 | 253 | 5 | 173 | 1.30e-60 | 195 |
Msa1040460 | MtrunA17_Chr7g0260441 | 58.929 | 168 | 60 | 2 | 94 | 253 | 9 | 175 | 2.13e-60 | 201 |
Msa1040460 | MtrunA17_Chr4g0037281 | 49.206 | 189 | 87 | 3 | 74 | 254 | 29 | 216 | 3.24e-58 | 184 |
Msa1040460 | MtrunA17_Chr2g0321111 | 54.730 | 148 | 62 | 4 | 104 | 250 | 469 | 612 | 1.90e-44 | 158 |
Msa1040460 | MtrunA17_Chr3g0138061 | 47.368 | 171 | 81 | 2 | 95 | 257 | 13 | 182 | 6.30e-40 | 147 |
Msa1040460 | MtrunA17_Chr7g0266721 | 50.000 | 146 | 68 | 4 | 104 | 248 | 17 | 158 | 9.61e-40 | 135 |
Msa1040460 | MtrunA17_Chr1g0149061 | 44.262 | 183 | 86 | 4 | 86 | 257 | 1 | 178 | 6.63e-39 | 143 |
Msa1040460 | MtrunA17_Chr8g0351571 | 51.034 | 145 | 66 | 4 | 104 | 247 | 8 | 148 | 1.74e-35 | 124 |
Msa1040460 | MtrunA17_Chr5g0401141 | 46.528 | 144 | 72 | 4 | 106 | 248 | 354 | 493 | 2.13e-30 | 119 |
Msa1040460 | MtrunA17_Chr3g0122871 | 66.667 | 60 | 20 | 0 | 177 | 236 | 55 | 114 | 1.49e-25 | 97.4 |
Msa1040460 | MtrunA17_Chr2g0288371 | 44.000 | 150 | 73 | 7 | 106 | 250 | 22 | 165 | 2.52e-22 | 95.5 |
Msa1040460 | MtrunA17_Chr6g0484281 | 41.353 | 133 | 65 | 5 | 104 | 227 | 8 | 136 | 3.53e-19 | 86.7 |
Msa1040460 | MtrunA17_Chr8g0357591 | 40.602 | 133 | 66 | 5 | 104 | 227 | 8 | 136 | 4.97e-18 | 83.2 |
Msa1040460 | MtrunA17_Chr1g0199071 | 35.948 | 153 | 77 | 7 | 104 | 250 | 87 | 224 | 4.93e-17 | 77.8 |
Msa1040460 | MtrunA17_Chr2g0305071 | 31.333 | 150 | 84 | 6 | 105 | 235 | 91 | 240 | 2.19e-15 | 74.3 |
Msa1040460 | MtrunA17_Chr1g0163031 | 29.932 | 147 | 95 | 5 | 104 | 250 | 86 | 224 | 5.75e-12 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1040460 | AT3G62030.3 | 61.240 | 258 | 98 | 1 | 1 | 256 | 1 | 258 | 1.61e-110 | 319 |
Msa1040460 | AT3G62030.1 | 61.004 | 259 | 98 | 1 | 1 | 256 | 1 | 259 | 3.05e-110 | 318 |
Msa1040460 | AT3G62030.2 | 70.507 | 217 | 57 | 3 | 45 | 257 | 100 | 313 | 4.40e-107 | 312 |
Msa1040460 | AT5G13120.2 | 65.922 | 179 | 58 | 1 | 80 | 255 | 74 | 252 | 6.80e-88 | 261 |
Msa1040460 | AT5G13120.1 | 65.922 | 179 | 58 | 1 | 80 | 255 | 78 | 256 | 6.96e-88 | 261 |
Msa1040460 | AT5G58710.1 | 61.497 | 187 | 60 | 3 | 76 | 255 | 23 | 204 | 8.96e-76 | 229 |
Msa1040460 | AT2G29960.1 | 60.963 | 187 | 65 | 2 | 76 | 255 | 16 | 201 | 3.90e-75 | 227 |
Msa1040460 | AT2G29960.3 | 60.963 | 187 | 65 | 2 | 76 | 255 | 16 | 201 | 3.90e-75 | 227 |
Msa1040460 | AT2G21130.1 | 61.905 | 168 | 56 | 2 | 93 | 253 | 6 | 172 | 8.76e-71 | 215 |
Msa1040460 | AT4G38740.1 | 60.714 | 168 | 58 | 2 | 93 | 253 | 5 | 171 | 1.90e-69 | 212 |
Msa1040460 | AT3G56070.1 | 61.310 | 168 | 57 | 2 | 93 | 253 | 5 | 171 | 9.52e-69 | 210 |
Msa1040460 | AT3G56070.2 | 61.310 | 168 | 57 | 2 | 93 | 253 | 5 | 171 | 9.52e-69 | 210 |
Msa1040460 | AT2G16600.1 | 59.412 | 170 | 57 | 3 | 93 | 253 | 6 | 172 | 9.95e-69 | 210 |
Msa1040460 | AT3G55920.1 | 53.731 | 201 | 75 | 3 | 72 | 255 | 29 | 228 | 5.20e-68 | 210 |
Msa1040460 | AT2G29960.2 | 56.684 | 187 | 63 | 3 | 76 | 255 | 16 | 191 | 4.88e-66 | 204 |
Msa1040460 | AT4G34870.1 | 55.491 | 173 | 59 | 3 | 93 | 253 | 5 | 171 | 8.87e-62 | 192 |
Msa1040460 | AT2G15790.1 | 56.140 | 171 | 67 | 1 | 92 | 254 | 4 | 174 | 7.14e-61 | 196 |
Msa1040460 | AT3G63400.2 | 56.000 | 175 | 68 | 2 | 86 | 252 | 1 | 174 | 7.92e-61 | 197 |
Msa1040460 | AT2G38730.1 | 55.758 | 165 | 67 | 2 | 95 | 253 | 35 | 199 | 2.06e-59 | 187 |
Msa1040460 | AT3G63400.3 | 56.000 | 175 | 68 | 2 | 86 | 252 | 1 | 174 | 2.41e-59 | 197 |
Msa1040460 | AT3G63400.4 | 56.000 | 175 | 68 | 2 | 86 | 252 | 1 | 174 | 2.41e-59 | 197 |
Msa1040460 | AT3G63400.1 | 56.000 | 175 | 68 | 2 | 86 | 252 | 1 | 174 | 2.41e-59 | 197 |
Msa1040460 | AT4G34960.1 | 52.571 | 175 | 76 | 1 | 89 | 256 | 44 | 218 | 3.23e-59 | 187 |
Msa1040460 | AT2G16600.2 | 54.601 | 163 | 54 | 3 | 93 | 253 | 6 | 150 | 9.34e-58 | 181 |
Msa1040460 | AT4G34960.2 | 57.031 | 128 | 48 | 1 | 89 | 209 | 44 | 171 | 6.40e-47 | 154 |
Msa1040460 | AT3G44600.1 | 55.405 | 148 | 61 | 4 | 104 | 250 | 483 | 626 | 1.29e-43 | 156 |
Msa1040460 | AT2G36130.1 | 49.315 | 146 | 69 | 4 | 104 | 248 | 17 | 158 | 1.98e-39 | 135 |
Msa1040460 | AT1G01940.1 | 49.655 | 145 | 68 | 4 | 104 | 247 | 8 | 148 | 1.16e-35 | 125 |
Msa1040460 | AT4G32420.1 | 43.575 | 179 | 84 | 4 | 86 | 252 | 1 | 174 | 2.09e-34 | 131 |
Msa1040460 | AT4G32420.5 | 43.575 | 179 | 84 | 4 | 86 | 252 | 1 | 174 | 2.09e-34 | 131 |
Msa1040460 | AT4G32420.3 | 43.575 | 179 | 84 | 4 | 86 | 252 | 1 | 174 | 2.09e-34 | 131 |
Msa1040460 | AT4G32420.6 | 43.575 | 179 | 84 | 4 | 86 | 252 | 1 | 174 | 2.09e-34 | 131 |
Msa1040460 | AT4G32420.4 | 45.455 | 154 | 76 | 1 | 86 | 231 | 1 | 154 | 7.48e-34 | 129 |
Msa1040460 | AT3G22920.1 | 42.442 | 172 | 79 | 7 | 93 | 253 | 5 | 167 | 6.90e-33 | 120 |
Msa1040460 | AT5G67530.1 | 45.139 | 144 | 74 | 4 | 106 | 248 | 353 | 492 | 1.83e-30 | 119 |
Msa1040460 | AT4G33060.1 | 44.755 | 143 | 72 | 6 | 106 | 245 | 22 | 160 | 1.09e-25 | 105 |
Msa1040460 | AT1G53720.2 | 37.908 | 153 | 82 | 5 | 104 | 247 | 8 | 156 | 1.21e-19 | 87.4 |
Msa1040460 | AT1G53720.1 | 37.908 | 153 | 82 | 5 | 104 | 247 | 8 | 156 | 2.73e-19 | 87.0 |
Msa1040460 | AT2G47320.1 | 31.081 | 148 | 95 | 4 | 106 | 253 | 87 | 227 | 1.98e-14 | 70.9 |
Msa1040460 | AT3G66654.4 | 29.677 | 155 | 83 | 4 | 104 | 247 | 88 | 227 | 4.43e-12 | 64.3 |
Msa1040460 | AT3G66654.2 | 29.677 | 155 | 83 | 4 | 104 | 247 | 88 | 227 | 4.43e-12 | 64.3 |
Msa1040460 | AT3G66654.3 | 29.677 | 155 | 83 | 4 | 104 | 247 | 88 | 227 | 4.43e-12 | 64.3 |
Msa1040460 | AT3G66654.1 | 29.677 | 155 | 83 | 4 | 104 | 247 | 88 | 227 | 4.43e-12 | 64.3 |
Msa1040460 | AT3G66654.5 | 29.677 | 155 | 83 | 4 | 104 | 247 | 88 | 227 | 4.43e-12 | 64.3 |
Find 78 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAACATGCAAATCATATAAT+TGG | 0.143786 | 7_1:+77843331 | None:intergenic |
AAAGCGGTACTATTTATTAT+TGG | 0.202614 | 7_1:+77845992 | None:intergenic |
ATCTTTGGGCAGAATCGTTT+TGG | 0.218231 | 7_1:-77844721 | Msa1040460:CDS |
GCATAAGTATCAACCATCTA+TGG | 0.238764 | 7_1:+77843566 | None:intergenic |
AATTGACTACCATTGGTATT+AGG | 0.256008 | 7_1:+77844044 | None:intergenic |
AATCAAAGAATTCATGATTC+AGG | 0.260889 | 7_1:-77844496 | Msa1040460:CDS |
AAGCGGTACTATTTATTATT+GGG | 0.299815 | 7_1:+77845993 | None:intergenic |
TAGCCAAGATGTGTTGTCTA+TGG | 0.302130 | 7_1:-77845704 | Msa1040460:CDS |
ACCTTTGACTCAAGAAGCTT+TGG | 0.335511 | 7_1:+77845914 | None:intergenic |
AACATGCAAATCATATAATT+GGG | 0.349416 | 7_1:+77843332 | None:intergenic |
AGAAGCTTTGGTTGGTTTGT+TGG | 0.354893 | 7_1:+77845926 | None:intergenic |
TCACATACCGTGTCACAAAT+TGG | 0.359007 | 7_1:-77845673 | Msa1040460:CDS |
CTGCAGAATGGATTGTCATT+TGG | 0.361297 | 7_1:-77843475 | Msa1040460:three_prime_UTR |
GACAATCGACATGTCGTGTT+TGG | 0.370445 | 7_1:-77843696 | Msa1040460:CDS |
CACCTAACTGCAACAAGAAA+TGG | 0.380372 | 7_1:+77845880 | None:intergenic |
ACCGGTGGAGCTAGTATCTA+TGG | 0.385843 | 7_1:-77844286 | Msa1040460:CDS |
CATTCTGCAGCAACCGATGA+TGG | 0.413214 | 7_1:+77843488 | None:intergenic |
GAAACATTTGGTAGTCACTT+TGG | 0.413346 | 7_1:+77844767 | None:intergenic |
TTCCATTGGCTGCAGGGAAC+CGG | 0.414205 | 7_1:-77844304 | Msa1040460:intron |
TAAAATCACATGTTGCTTTG+AGG | 0.423621 | 7_1:-77845630 | Msa1040460:CDS |
GTGTTTGGACATGTTATTGA+TGG | 0.424405 | 7_1:-77843681 | Msa1040460:CDS |
TGTTTCTTTGACGTAGAAGC+TGG | 0.427261 | 7_1:-77844750 | Msa1040460:CDS |
AATAATAAATAGTACCGCTT+TGG | 0.427961 | 7_1:-77845990 | Msa1040460:five_prime_UTR |
AATTTCCGTGCTTTGTGCAC+AGG | 0.435339 | 7_1:-77844663 | Msa1040460:intron |
ATCAAAGAATTCATGATTCA+GGG | 0.448304 | 7_1:-77844495 | Msa1040460:CDS |
TGTGAGGACACTTGAGTCTC+AGG | 0.450710 | 7_1:-77843649 | Msa1040460:CDS |
TTCTACGTCAAAGAAACATT+TGG | 0.450882 | 7_1:+77844755 | None:intergenic |
AACCATTTCTTGTTGCAGTT+AGG | 0.451429 | 7_1:-77845882 | Msa1040460:five_prime_UTR |
GTGCTTACCGAGTTACTGTT+TGG | 0.458334 | 7_1:+77843260 | None:intergenic |
GAACCATAGACAACACATCT+TGG | 0.462350 | 7_1:+77845701 | None:intergenic |
TAATCTTGTGCAGGAGAGAA+AGG | 0.477763 | 7_1:-77844552 | Msa1040460:intron |
TTCTTTGATTATACGATGGA+AGG | 0.485601 | 7_1:+77844509 | None:intergenic |
CATCATCGGTTGCTGCAGAA+TGG | 0.488518 | 7_1:-77843487 | Msa1040460:three_prime_UTR |
TTCTTGTTGCAGTTAGGTGA+TGG | 0.492720 | 7_1:-77845876 | Msa1040460:exon |
TGTGGAGAACTGCCCATAGA+TGG | 0.494631 | 7_1:-77843579 | Msa1040460:CDS |
GCAGTGAAGCATGTTGGTCC+TGG | 0.495639 | 7_1:-77844092 | Msa1040460:intron |
TTTAGAATGTTTCCCATCAT+CGG | 0.499977 | 7_1:-77843501 | Msa1040460:three_prime_UTR |
GAGTGAAAATTGTACTCAAA+CGG | 0.500982 | 7_1:+77843524 | None:intergenic |
CAAGATCAATTACATATAGT+AGG | 0.501803 | 7_1:-77845582 | Msa1040460:CDS |
TGGACATGTTATTGATGGAA+TGG | 0.518793 | 7_1:-77843676 | Msa1040460:CDS |
ACCAAAGCTTCTTGAGTCAA+AGG | 0.519131 | 7_1:-77845915 | Msa1040460:five_prime_UTR |
GTTTCTTTGACGTAGAAGCT+GGG | 0.521245 | 7_1:-77844749 | Msa1040460:CDS |
TTGACTCAAGAAGCTTTGGT+TGG | 0.534342 | 7_1:+77845918 | None:intergenic |
CATTGGCTGCAGGGAACCGG+TGG | 0.542546 | 7_1:-77844301 | Msa1040460:intron |
ATTCTGCAGCAACCGATGAT+GGG | 0.550770 | 7_1:+77843489 | None:intergenic |
ACTACCATTGGTATTAGGAC+CGG | 0.552266 | 7_1:+77844049 | None:intergenic |
CAAACCTGAAAATGAGAAAG+TGG | 0.556937 | 7_1:+77845815 | None:intergenic |
TAGATGGTTGATACTTATGC+GGG | 0.564926 | 7_1:-77843563 | Msa1040460:exon |
TTTGCCATGCTCAAAACTCC+AGG | 0.566786 | 7_1:+77844074 | None:intergenic |
ATGTGTTGTCTATGGTTCAA+AGG | 0.570074 | 7_1:-77845696 | Msa1040460:CDS |
GCTTGCCTGTGCACAAAGCA+CGG | 0.576315 | 7_1:+77844658 | None:intergenic |
CCTTGCAGAATCGTTAATTG+TGG | 0.578481 | 7_1:-77843597 | Msa1040460:CDS |
AGATTGAAGCAGTTGAGTTG+AGG | 0.584496 | 7_1:+77845844 | None:intergenic |
ACCATAGATACTAGCTCCAC+CGG | 0.585192 | 7_1:+77844285 | None:intergenic |
CCACAATTAACGATTCTGCA+AGG | 0.598585 | 7_1:+77843597 | None:intergenic |
TGTGCAGGAGAGAAAGGATA+CGG | 0.600737 | 7_1:-77844546 | Msa1040460:intron |
CATAAGTATCAACCATCTAT+GGG | 0.602479 | 7_1:+77843567 | None:intergenic |
CTTCTTGCAGTGAAGCATGT+TGG | 0.605444 | 7_1:-77844098 | Msa1040460:intron |
ACATGCAAATCATATAATTG+GGG | 0.608394 | 7_1:+77843333 | None:intergenic |
ACTGTAACCAATTTGTGACA+CGG | 0.612206 | 7_1:+77845666 | None:intergenic |
TGAATTCTTTGATTATACGA+TGG | 0.620498 | 7_1:+77844505 | None:intergenic |
GAGAAAGGATACGGTTACAA+AGG | 0.621131 | 7_1:-77844537 | Msa1040460:CDS |
GACGAATATTCTCGCCAAAG+CGG | 0.622225 | 7_1:+77845976 | None:intergenic |
ACTAATACCAAACAGTAACT+CGG | 0.623902 | 7_1:-77843267 | Msa1040460:three_prime_UTR |
TTTCTTTGACGTAGAAGCTG+GGG | 0.628424 | 7_1:-77844748 | Msa1040460:CDS |
TTCTTTGACGTAGAAGCTGG+GGG | 0.630560 | 7_1:-77844747 | Msa1040460:CDS |
TTGAGTCTCAGGAAACAAGC+AGG | 0.634425 | 7_1:-77843638 | Msa1040460:CDS |
CAGGGAGGAGACTTCACTGA+GGG | 0.643258 | 7_1:-77844477 | Msa1040460:CDS |
CTAAACATGGACTAGTCATG+AGG | 0.657365 | 7_1:+77843305 | None:intergenic |
AATGCCGGTCCTAATACCAA+TGG | 0.661326 | 7_1:-77844053 | Msa1040460:CDS |
ATAGATGGTTGATACTTATG+CGG | 0.663955 | 7_1:-77843564 | Msa1040460:exon |
TTGATGGAATGGATGTTGTG+AGG | 0.678873 | 7_1:-77843665 | Msa1040460:CDS |
GAAACTTTAGAAACTAAACA+TGG | 0.682882 | 7_1:+77843292 | None:intergenic |
AAACCTGAAAATGAGAAAGT+GGG | 0.705584 | 7_1:+77845816 | None:intergenic |
TCTTGCTCCAAATTGTTGCG+TGG | 0.716266 | 7_1:+77845600 | None:intergenic |
ACATGTCGATTGTCTAACCA+CGG | 0.718954 | 7_1:+77843705 | None:intergenic |
AAAGAATTCATGATTCAGGG+AGG | 0.735053 | 7_1:-77844492 | Msa1040460:CDS |
TCAGGGAGGAGACTTCACTG+AGG | 0.753671 | 7_1:-77844478 | Msa1040460:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTTCAATATATATTATTGA+CGG | + | chr7_1:77843948-77843967 | None:intergenic | 10.0% |
!!! | AAAATGTAAGTTTTTCATTT+TGG | - | chr7_1:77843734-77843753 | Msa1040460:intron | 15.0% |
!! | ATAAAAAAATCATTTCAGAT+AGG | + | chr7_1:77844282-77844301 | None:intergenic | 15.0% |
!!! | GTGTTGAAAATAAATTTTTT+AGG | + | chr7_1:77845148-77845167 | None:intergenic | 15.0% |
!! | GTTATATTTGAATATTAGAT+TGG | - | chr7_1:77845428-77845447 | Msa1040460:intron | 15.0% |
!! | GATTAATGAACAAAAACAAT+TGG | + | chr7_1:77843505-77843524 | None:intergenic | 20.0% |
!!! | AATGTTTGTTTGTTTTTTTC+AGG | - | chr7_1:77843531-77843550 | Msa1040460:three_prime_UTR | 20.0% |
!!! | ATGTTTGTTTGTTTTTTTCA+GGG | - | chr7_1:77843532-77843551 | Msa1040460:three_prime_UTR | 20.0% |
!!! | AAATGAGTAAATAGTCATTT+TGG | - | chr7_1:77843890-77843909 | Msa1040460:intron | 20.0% |
!! | ACTTACTTCTGTAATTTATA+AGG | - | chr7_1:77844217-77844236 | Msa1040460:intron | 20.0% |
!!! | ATGGTTTTATTACTGTTATT+AGG | - | chr7_1:77844460-77844479 | Msa1040460:intron | 20.0% |
!!! | TAACATAGCATTTTAAAGTT+TGG | - | chr7_1:77844684-77844703 | Msa1040460:CDS | 20.0% |
!! | CATAGAAACAAATATAACAA+AGG | + | chr7_1:77844862-77844881 | None:intergenic | 20.0% |
!!! | TTAATTACACTGTTTTAAAC+TGG | + | chr7_1:77845122-77845141 | None:intergenic | 20.0% |
!! | AATAAAAAATTGACTACCAT+TGG | + | chr7_1:77845231-77845250 | None:intergenic | 20.0% |
!!! | ATTTTTTATTTGCACTGTTA+AGG | - | chr7_1:77845241-77845260 | Msa1040460:intron | 20.0% |
!!! | AGTTTTGAAGTAAAAATATC+AGG | + | chr7_1:77845284-77845303 | None:intergenic | 20.0% |
!! | AACATGCAAATCATATAATT+GGG | + | chr7_1:77845936-77845955 | None:intergenic | 20.0% |
!! | AAACATGCAAATCATATAAT+TGG | + | chr7_1:77845937-77845956 | None:intergenic | 20.0% |
! | AAGCGGTACTATTTATTATT+GGG | + | chr7_1:77843275-77843294 | None:intergenic | 25.0% |
! | AAAGCGGTACTATTTATTAT+TGG | + | chr7_1:77843276-77843295 | None:intergenic | 25.0% |
! | AATAATAAATAGTACCGCTT+TGG | - | chr7_1:77843275-77843294 | Msa1040460:three_prime_UTR | 25.0% |
! | CAAGATCAATTACATATAGT+AGG | - | chr7_1:77843683-77843702 | Msa1040460:CDS | 25.0% |
!!! | GTTTTAAAACGAGATTGTTA+TGG | + | chr7_1:77843852-77843871 | None:intergenic | 25.0% |
! | GTCCATAAAATTACTAACAA+AGG | - | chr7_1:77844079-77844098 | Msa1040460:CDS | 25.0% |
!! | GTCCTTTGTTAGTAATTTTA+TGG | + | chr7_1:77844084-77844103 | None:intergenic | 25.0% |
! | TTGTTAATCACAAAAATCGT+TGG | - | chr7_1:77844380-77844399 | Msa1040460:intron | 25.0% |
! | TGAATTCTTTGATTATACGA+TGG | + | chr7_1:77844763-77844782 | None:intergenic | 25.0% |
! | AATCAAAGAATTCATGATTC+AGG | - | chr7_1:77844769-77844788 | Msa1040460:CDS | 25.0% |
! | ATCAAAGAATTCATGATTCA+GGG | - | chr7_1:77844770-77844789 | Msa1040460:CDS | 25.0% |
!!! | TGGTTTTTAAAATTTCTCCT+TGG | - | chr7_1:77845088-77845107 | Msa1040460:intron | 25.0% |
! | GCTTAAAAATCAATAATCAC+TGG | - | chr7_1:77845345-77845364 | Msa1040460:intron | 25.0% |
! | AAAAATCAATAATCACTGGT+TGG | - | chr7_1:77845349-77845368 | Msa1040460:intron | 25.0% |
! | TGGTTGTTTATTTACATGAT+TGG | - | chr7_1:77845369-77845388 | Msa1040460:intron | 25.0% |
! | CTTAGCATATACAGAAAATA+AGG | + | chr7_1:77845462-77845481 | None:intergenic | 25.0% |
! | ACATGCAAATCATATAATTG+GGG | + | chr7_1:77845935-77845954 | None:intergenic | 25.0% |
!! | GAAACTTTAGAAACTAAACA+TGG | + | chr7_1:77845976-77845995 | None:intergenic | 25.0% |
AAACCTGAAAATGAGAAAGT+GGG | + | chr7_1:77843452-77843471 | None:intergenic | 30.0% | |
!!! | ATTTTCAGGTTTGCACAAAT+GGG | - | chr7_1:77843460-77843479 | Msa1040460:three_prime_UTR | 30.0% |
!! | TAAAATCACATGTTGCTTTG+AGG | - | chr7_1:77843635-77843654 | Msa1040460:CDS | 30.0% |
AAGGATGTTATGTTATGACA+TGG | - | chr7_1:77843796-77843815 | Msa1040460:intron | 30.0% | |
AGGATGTTATGTTATGACAT+GGG | - | chr7_1:77843797-77843816 | Msa1040460:intron | 30.0% | |
! | TTTTGGTCCTTAAATGTTTG+AGG | - | chr7_1:77843907-77843926 | Msa1040460:intron | 30.0% |
TTTGGTCCTTAAATGTTTGA+GGG | - | chr7_1:77843908-77843927 | Msa1040460:intron | 30.0% | |
TACTAACAAAGGACACATTT+AGG | - | chr7_1:77844090-77844109 | Msa1040460:CDS | 30.0% | |
ACTAACAAAGGACACATTTA+GGG | - | chr7_1:77844091-77844110 | Msa1040460:CDS | 30.0% | |
GGACGTTTATTATCTTTACA+TGG | - | chr7_1:77844441-77844460 | Msa1040460:intron | 30.0% | |
TTCTACGTCAAAGAAACATT+TGG | + | chr7_1:77844513-77844532 | None:intergenic | 30.0% | |
! | CGGAAATTTTCAACTGTTTT+AGG | + | chr7_1:77844590-77844609 | None:intergenic | 30.0% |
! | ATCAAAGGTGCAGAAAAATA+TGG | + | chr7_1:77844635-77844654 | None:intergenic | 30.0% |
CACATTCAAAAAAGTAATCC+AGG | + | chr7_1:77844664-77844683 | None:intergenic | 30.0% | |
TTCTTTGATTATACGATGGA+AGG | + | chr7_1:77844759-77844778 | None:intergenic | 30.0% | |
CCTTCATTGAAACAAATACA+TGG | + | chr7_1:77844911-77844930 | None:intergenic | 30.0% | |
CCATGTATTTGTTTCAATGA+AGG | - | chr7_1:77844908-77844927 | Msa1040460:intron | 30.0% | |
!! | CTAGATTTTTAGATAGTGCT+TGG | - | chr7_1:77845068-77845087 | Msa1040460:intron | 30.0% |
TTAAACTGGAATTAAAGCCA+AGG | + | chr7_1:77845108-77845127 | None:intergenic | 30.0% | |
AATTGACTACCATTGGTATT+AGG | + | chr7_1:77845224-77845243 | None:intergenic | 30.0% | |
CATAAGTATCAACCATCTAT+GGG | + | chr7_1:77845701-77845720 | None:intergenic | 30.0% | |
! | ATAGATGGTTGATACTTATG+CGG | - | chr7_1:77845701-77845720 | Msa1040460:CDS | 30.0% |
GAGTGAAAATTGTACTCAAA+CGG | + | chr7_1:77845744-77845763 | None:intergenic | 30.0% | |
! | TTTAGAATGTTTCCCATCAT+CGG | - | chr7_1:77845764-77845783 | Msa1040460:intron | 30.0% |
AACCATTTCTTGTTGCAGTT+AGG | - | chr7_1:77843383-77843402 | Msa1040460:three_prime_UTR | 35.0% | |
CAAACCTGAAAATGAGAAAG+TGG | + | chr7_1:77843453-77843472 | None:intergenic | 35.0% | |
!!! | CATTTTCAGGTTTGCACAAA+TGG | - | chr7_1:77843459-77843478 | Msa1040460:three_prime_UTR | 35.0% |
!!! | TTTTCAGGTTTGCACAAATG+GGG | - | chr7_1:77843461-77843480 | Msa1040460:three_prime_UTR | 35.0% |
ATGTGTTGTCTATGGTTCAA+AGG | - | chr7_1:77843569-77843588 | Msa1040460:exon | 35.0% | |
ACTGTAACCAATTTGTGACA+CGG | + | chr7_1:77843602-77843621 | None:intergenic | 35.0% | |
GTTAGTACAATAATTGTCCC+TGG | - | chr7_1:77843762-77843781 | Msa1040460:intron | 35.0% | |
TTGGTCCTTAAATGTTTGAG+GGG | - | chr7_1:77843909-77843928 | Msa1040460:intron | 35.0% | |
GTATCCTTCGTTTGTAACAT+TGG | - | chr7_1:77843982-77844001 | Msa1040460:intron | 35.0% | |
AGAACCAATGTTACAAACGA+AGG | + | chr7_1:77843989-77844008 | None:intergenic | 35.0% | |
!! | ATTTTGATCCCAAATGTGTG+AGG | + | chr7_1:77844157-77844176 | None:intergenic | 35.0% |
CTGTGTTGTGATTAAGATGT+TGG | - | chr7_1:77844420-77844439 | Msa1040460:intron | 35.0% | |
! | GAAACATTTGGTAGTCACTT+TGG | + | chr7_1:77844501-77844520 | None:intergenic | 35.0% |
TAATCCAGGTACAAGATCAA+AGG | + | chr7_1:77844650-77844669 | None:intergenic | 35.0% | |
AAAGAATTCATGATTCAGGG+AGG | - | chr7_1:77844773-77844792 | Msa1040460:CDS | 35.0% | |
TGAAACAAATACATGGCAAG+TGG | + | chr7_1:77844904-77844923 | None:intergenic | 35.0% | |
CACTCAAAATGTGTTTCCAT+TGG | - | chr7_1:77844947-77844966 | Msa1040460:intron | 35.0% | |
GTGTTTGGACATGTTATTGA+TGG | - | chr7_1:77845584-77845603 | Msa1040460:CDS | 35.0% | |
TGGACATGTTATTGATGGAA+TGG | - | chr7_1:77845589-77845608 | Msa1040460:CDS | 35.0% | |
GCATAAGTATCAACCATCTA+TGG | + | chr7_1:77845702-77845721 | None:intergenic | 35.0% | |
! | TAGATGGTTGATACTTATGC+GGG | - | chr7_1:77845702-77845721 | Msa1040460:CDS | 35.0% |
!! | AGAAGCTTTGGTTGGTTTGT+TGG | + | chr7_1:77843342-77843361 | None:intergenic | 40.0% |
! | TTGACTCAAGAAGCTTTGGT+TGG | + | chr7_1:77843350-77843369 | None:intergenic | 40.0% |
ACCAAAGCTTCTTGAGTCAA+AGG | - | chr7_1:77843350-77843369 | Msa1040460:three_prime_UTR | 40.0% | |
ACCTTTGACTCAAGAAGCTT+TGG | + | chr7_1:77843354-77843373 | None:intergenic | 40.0% | |
CACCTAACTGCAACAAGAAA+TGG | + | chr7_1:77843388-77843407 | None:intergenic | 40.0% | |
TTCTTGTTGCAGTTAGGTGA+TGG | - | chr7_1:77843389-77843408 | Msa1040460:three_prime_UTR | 40.0% | |
! | AGATTGAAGCAGTTGAGTTG+AGG | + | chr7_1:77843424-77843443 | None:intergenic | 40.0% |
! | CAACCCACTTTCTCATTTTC+AGG | - | chr7_1:77843446-77843465 | Msa1040460:three_prime_UTR | 40.0% |
! | GTTTGCACAAATGGGGTTTT+GGG | - | chr7_1:77843468-77843487 | Msa1040460:three_prime_UTR | 40.0% |
TAGCCAAGATGTGTTGTCTA+TGG | - | chr7_1:77843561-77843580 | Msa1040460:exon | 40.0% | |
GAACCATAGACAACACATCT+TGG | + | chr7_1:77843567-77843586 | None:intergenic | 40.0% | |
TCACATACCGTGTCACAAAT+TGG | - | chr7_1:77843592-77843611 | Msa1040460:CDS | 40.0% | |
! | TTTTCTGCCACGCAACAATT+TGG | - | chr7_1:77843658-77843677 | Msa1040460:CDS | 40.0% |
ATCCTTCAACAACATCTCCA+GGG | + | chr7_1:77843782-77843801 | None:intergenic | 40.0% | |
GACAACCCCTCAAACATTTA+AGG | + | chr7_1:77843917-77843936 | None:intergenic | 40.0% | |
ACTTTAGTGCCTCACACATT+TGG | - | chr7_1:77844145-77844164 | Msa1040460:intron | 40.0% | |
CTTTAGTGCCTCACACATTT+GGG | - | chr7_1:77844146-77844165 | Msa1040460:intron | 40.0% | |
TGTTTCTTTGACGTAGAAGC+TGG | - | chr7_1:77844515-77844534 | Msa1040460:CDS | 40.0% | |
GTTTCTTTGACGTAGAAGCT+GGG | - | chr7_1:77844516-77844535 | Msa1040460:CDS | 40.0% | |
TTTCTTTGACGTAGAAGCTG+GGG | - | chr7_1:77844517-77844536 | Msa1040460:CDS | 40.0% | |
! | ATCTTTGGGCAGAATCGTTT+TGG | - | chr7_1:77844544-77844563 | Msa1040460:intron | 40.0% |
! | TCTTTGGGCAGAATCGTTTT+GGG | - | chr7_1:77844545-77844564 | Msa1040460:intron | 40.0% |
!! | AGAATCGTTTTGGGCTTGTT+TGG | - | chr7_1:77844554-77844573 | Msa1040460:intron | 40.0% |
TGGCTTCAATAATCTTGTGC+AGG | - | chr7_1:77844704-77844723 | Msa1040460:CDS | 40.0% | |
TAATCTTGTGCAGGAGAGAA+AGG | - | chr7_1:77844713-77844732 | Msa1040460:CDS | 40.0% | |
GAGAAAGGATACGGTTACAA+AGG | - | chr7_1:77844728-77844747 | Msa1040460:CDS | 40.0% | |
AACATGCAACAGAGACATAC+AGG | + | chr7_1:77845031-77845050 | None:intergenic | 40.0% | |
ACTACCATTGGTATTAGGAC+CGG | + | chr7_1:77845219-77845238 | None:intergenic | 40.0% | |
CATGATTGGAAAGCTCACTA+TGG | - | chr7_1:77845383-77845402 | Msa1040460:intron | 40.0% | |
! | ATTTTATGATGCAGACTCCG+TGG | - | chr7_1:77845543-77845562 | Msa1040460:intron | 40.0% |
! | ACATGTCGATTGTCTAACCA+CGG | + | chr7_1:77845563-77845582 | None:intergenic | 40.0% |
TTGATGGAATGGATGTTGTG+AGG | - | chr7_1:77845600-77845619 | Msa1040460:CDS | 40.0% | |
! | CGATTCTGCAAGGCTTTTTA+GGG | + | chr7_1:77845661-77845680 | None:intergenic | 40.0% |
! | ACGATTCTGCAAGGCTTTTT+AGG | + | chr7_1:77845662-77845681 | None:intergenic | 40.0% |
CCACAATTAACGATTCTGCA+AGG | + | chr7_1:77845671-77845690 | None:intergenic | 40.0% | |
CCTTGCAGAATCGTTAATTG+TGG | - | chr7_1:77845668-77845687 | Msa1040460:CDS | 40.0% | |
!! | CTGCAGAATGGATTGTCATT+TGG | - | chr7_1:77845790-77845809 | Msa1040460:intron | 40.0% |
!! | CTAAACATGGACTAGTCATG+AGG | + | chr7_1:77845963-77845982 | None:intergenic | 40.0% |
GACGAATATTCTCGCCAAAG+CGG | + | chr7_1:77843292-77843311 | None:intergenic | 45.0% | |
! | GGTTTGCACAAATGGGGTTT+TGG | - | chr7_1:77843467-77843486 | Msa1040460:three_prime_UTR | 45.0% |
TCTTGCTCCAAATTGTTGCG+TGG | + | chr7_1:77843668-77843687 | None:intergenic | 45.0% | |
CATCCTTCAACAACATCTCC+AGG | + | chr7_1:77843783-77843802 | None:intergenic | 45.0% | |
TTCTTTGACGTAGAAGCTGG+GGG | - | chr7_1:77844518-77844537 | Msa1040460:CDS | 45.0% | |
AATTTCCGTGCTTTGTGCAC+AGG | - | chr7_1:77844602-77844621 | Msa1040460:intron | 45.0% | |
TGCACCTTTGATCTTGTACC+TGG | - | chr7_1:77844643-77844662 | Msa1040460:intron | 45.0% | |
TGTGCAGGAGAGAAAGGATA+CGG | - | chr7_1:77844719-77844738 | Msa1040460:CDS | 45.0% | |
! | AATGTGTTTCCATTGGCTGC+AGG | - | chr7_1:77844954-77844973 | Msa1040460:intron | 45.0% |
! | ATGTGTTTCCATTGGCTGCA+GGG | - | chr7_1:77844955-77844974 | Msa1040460:intron | 45.0% |
ACCATAGATACTAGCTCCAC+CGG | + | chr7_1:77844983-77845002 | None:intergenic | 45.0% | |
CTTCTTGCAGTGAAGCATGT+TGG | - | chr7_1:77845167-77845186 | Msa1040460:intron | 45.0% | |
TTTGCCATGCTCAAAACTCC+AGG | + | chr7_1:77845194-77845213 | None:intergenic | 45.0% | |
!! | GTTTTGAGCATGGCAAATGC+CGG | - | chr7_1:77845197-77845216 | Msa1040460:intron | 45.0% |
AATGCCGGTCCTAATACCAA+TGG | - | chr7_1:77845212-77845231 | Msa1040460:intron | 45.0% | |
TTGGAAAGCTCACTATGGCA+TGG | - | chr7_1:77845388-77845407 | Msa1040460:intron | 45.0% | |
GACAATCGACATGTCGTGTT+TGG | - | chr7_1:77845569-77845588 | Msa1040460:CDS | 45.0% | |
TTGAGTCTCAGGAAACAAGC+AGG | - | chr7_1:77845627-77845646 | Msa1040460:CDS | 45.0% | |
ATTCTGCAGCAACCGATGAT+GGG | + | chr7_1:77845779-77845798 | None:intergenic | 45.0% | |
GTCCCTGGAGATGTTGTTGA+AGG | - | chr7_1:77843777-77843796 | Msa1040460:intron | 50.0% | |
AGAAGCTGGGGGTCAATCTT+TGG | - | chr7_1:77844529-77844548 | Msa1040460:CDS | 50.0% | |
GAAGCTGGGGGTCAATCTTT+GGG | - | chr7_1:77844530-77844549 | Msa1040460:CDS | 50.0% | |
!! | CGTTTTGGGCTTGTTTGGAG+AGG | - | chr7_1:77844559-77844578 | Msa1040460:intron | 50.0% |
ACCGGTGGAGCTAGTATCTA+TGG | - | chr7_1:77844979-77844998 | Msa1040460:intron | 50.0% | |
!!! | TGGTCCTGGAGTTTTGAGCA+TGG | - | chr7_1:77845187-77845206 | Msa1040460:intron | 50.0% |
TGTGAGGACACTTGAGTCTC+AGG | - | chr7_1:77845616-77845635 | Msa1040460:CDS | 50.0% | |
TGTGGAGAACTGCCCATAGA+TGG | - | chr7_1:77845686-77845705 | Msa1040460:CDS | 50.0% | |
CATTCTGCAGCAACCGATGA+TGG | + | chr7_1:77845780-77845799 | None:intergenic | 50.0% | |
! | CATCATCGGTTGCTGCAGAA+TGG | - | chr7_1:77845778-77845797 | Msa1040460:intron | 50.0% |
GCTTGCCTGTGCACAAAGCA+CGG | + | chr7_1:77844610-77844629 | None:intergenic | 55.0% | |
TCAGGGAGGAGACTTCACTG+AGG | - | chr7_1:77844787-77844806 | Msa1040460:intron | 55.0% | |
CAGGGAGGAGACTTCACTGA+GGG | - | chr7_1:77844788-77844807 | Msa1040460:intron | 55.0% | |
! | TTCCATTGGCTGCAGGGAAC+CGG | - | chr7_1:77844961-77844980 | Msa1040460:intron | 55.0% |
GCAGTGAAGCATGTTGGTCC+TGG | - | chr7_1:77845173-77845192 | Msa1040460:intron | 55.0% | |
!! | CACCGGTTCCCTGCAGCCAA+TGG | + | chr7_1:77844966-77844985 | None:intergenic | 65.0% |
! | CATTGGCTGCAGGGAACCGG+TGG | - | chr7_1:77844964-77844983 | Msa1040460:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_1 | gene | 77843267 | 77846020 | 77843267 | ID=Msa1040460;Name=Msa1040460 |
chr7_1 | mRNA | 77843267 | 77846020 | 77843267 | ID=Msa1040460-mRNA-1;Parent=Msa1040460;Name=Msa1040460-mRNA-1;_AED=0.07;_eAED=0.07;_QI=141|1|1|1|1|1|7|308|257 |
chr7_1 | exon | 77843267 | 77843730 | 77843267 | ID=Msa1040460-mRNA-1:exon:20662;Parent=Msa1040460-mRNA-1 |
chr7_1 | exon | 77844025 | 77844110 | 77844025 | ID=Msa1040460-mRNA-1:exon:20661;Parent=Msa1040460-mRNA-1 |
chr7_1 | exon | 77844257 | 77844311 | 77844257 | ID=Msa1040460-mRNA-1:exon:20660;Parent=Msa1040460-mRNA-1 |
chr7_1 | exon | 77844473 | 77844561 | 77844473 | ID=Msa1040460-mRNA-1:exon:20659;Parent=Msa1040460-mRNA-1 |
chr7_1 | exon | 77844664 | 77844805 | 77844664 | ID=Msa1040460-mRNA-1:exon:20658;Parent=Msa1040460-mRNA-1 |
chr7_1 | exon | 77845549 | 77845734 | 77845549 | ID=Msa1040460-mRNA-1:exon:20657;Parent=Msa1040460-mRNA-1 |
chr7_1 | exon | 77845820 | 77846020 | 77845820 | ID=Msa1040460-mRNA-1:exon:20656;Parent=Msa1040460-mRNA-1 |
chr7_1 | five_prime_UTR | 77845880 | 77846020 | 77845880 | ID=Msa1040460-mRNA-1:five_prime_utr;Parent=Msa1040460-mRNA-1 |
chr7_1 | CDS | 77845820 | 77845879 | 77845820 | ID=Msa1040460-mRNA-1:cds;Parent=Msa1040460-mRNA-1 |
chr7_1 | CDS | 77845549 | 77845734 | 77845549 | ID=Msa1040460-mRNA-1:cds;Parent=Msa1040460-mRNA-1 |
chr7_1 | CDS | 77844664 | 77844805 | 77844664 | ID=Msa1040460-mRNA-1:cds;Parent=Msa1040460-mRNA-1 |
chr7_1 | CDS | 77844473 | 77844561 | 77844473 | ID=Msa1040460-mRNA-1:cds;Parent=Msa1040460-mRNA-1 |
chr7_1 | CDS | 77844257 | 77844311 | 77844257 | ID=Msa1040460-mRNA-1:cds;Parent=Msa1040460-mRNA-1 |
chr7_1 | CDS | 77844025 | 77844110 | 77844025 | ID=Msa1040460-mRNA-1:cds;Parent=Msa1040460-mRNA-1 |
chr7_1 | CDS | 77843575 | 77843730 | 77843575 | ID=Msa1040460-mRNA-1:cds;Parent=Msa1040460-mRNA-1 |
chr7_1 | three_prime_UTR | 77843267 | 77843574 | 77843267 | ID=Msa1040460-mRNA-1:three_prime_utr;Parent=Msa1040460-mRNA-1 |
Gene Sequence |
Protein sequence |