AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1083210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1083210 MtrunA17_Chr7g0270991 96.109 257 9 1 1 257 6 261 0.0 509
Msa1083210 MtrunA17_Chr1g0193711 71.318 258 66 6 1 257 1 251 9.27e-120 342
Msa1083210 MtrunA17_Chr1g0213971 66.310 187 60 1 72 255 57 243 3.46e-89 264
Msa1083210 MtrunA17_Chr3g0104751 61.413 184 59 3 83 255 21 203 1.05e-74 226
Msa1083210 MtrunA17_Chr3g0113441 63.158 171 55 2 90 253 62 231 6.02e-72 220
Msa1083210 MtrunA17_Chr4g0038431 59.649 171 61 2 90 253 2 171 2.59e-69 211
Msa1083210 MtrunA17_Chr3g0145501 59.064 171 62 2 93 256 13 182 5.09e-67 206
Msa1083210 MtrunA17_Chr7g0274841 66.438 146 42 1 93 231 5 150 1.02e-66 204
Msa1083210 MtrunA17_Chr8g0353571 57.576 165 64 2 95 253 21 185 1.01e-62 194
Msa1083210 MtrunA17_Chr4g0045321 56.140 171 67 1 92 254 4 174 8.48e-62 198
Msa1083210 MtrunA17_Chr8g0374621 55.030 169 68 1 93 253 5 173 1.34e-60 195
Msa1083210 MtrunA17_Chr7g0260441 58.929 168 60 2 94 253 9 175 2.20e-60 201
Msa1083210 MtrunA17_Chr4g0037281 49.206 189 87 3 74 254 29 216 3.34e-58 184
Msa1083210 MtrunA17_Chr2g0321111 54.730 148 62 4 104 250 469 612 1.79e-44 158
Msa1083210 MtrunA17_Chr7g0266721 50.000 146 68 4 104 248 17 158 9.71e-40 135
Msa1083210 MtrunA17_Chr3g0138061 47.368 171 81 2 95 257 13 182 9.90e-40 146
Msa1083210 MtrunA17_Chr1g0149061 44.262 183 86 4 86 257 1 178 5.41e-39 144
Msa1083210 MtrunA17_Chr8g0351571 51.034 145 66 4 104 247 8 148 1.70e-35 124
Msa1083210 MtrunA17_Chr5g0401141 46.528 144 72 4 106 248 354 493 2.01e-30 119
Msa1083210 MtrunA17_Chr3g0122871 66.667 60 20 0 177 236 55 114 1.75e-25 97.1
Msa1083210 MtrunA17_Chr2g0288371 44.000 150 73 7 106 250 22 165 3.15e-22 95.1
Msa1083210 MtrunA17_Chr6g0484281 41.353 133 65 5 104 227 8 136 2.92e-19 86.7
Msa1083210 MtrunA17_Chr8g0357591 40.602 133 66 5 104 227 8 136 4.39e-18 83.6
Msa1083210 MtrunA17_Chr1g0199071 35.948 153 77 7 104 250 87 224 4.64e-17 77.8
Msa1083210 MtrunA17_Chr2g0305071 30.667 150 85 5 105 235 91 240 2.21e-15 74.3
Msa1083210 MtrunA17_Chr1g0163031 29.932 147 95 5 104 250 86 224 4.82e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1083210 AT3G62030.3 61.240 258 98 1 1 256 1 258 1.65e-110 319
Msa1083210 AT3G62030.1 61.004 259 98 1 1 256 1 259 2.82e-110 318
Msa1083210 AT3G62030.2 70.507 217 57 3 45 257 100 313 4.80e-107 312
Msa1083210 AT5G13120.1 65.922 179 58 1 80 255 78 256 7.35e-88 261
Msa1083210 AT5G13120.2 65.922 179 58 1 80 255 74 252 8.28e-88 261
Msa1083210 AT5G58710.1 61.497 187 60 3 76 255 23 204 9.06e-76 229
Msa1083210 AT2G29960.1 60.963 187 65 2 76 255 16 201 3.90e-75 227
Msa1083210 AT2G29960.3 60.963 187 65 2 76 255 16 201 3.90e-75 227
Msa1083210 AT2G21130.1 61.905 168 56 2 93 253 6 172 1.05e-70 215
Msa1083210 AT4G38740.1 60.714 168 58 2 93 253 5 171 2.07e-69 211
Msa1083210 AT2G16600.1 59.412 170 57 3 93 253 6 172 9.84e-69 210
Msa1083210 AT3G56070.1 61.310 168 57 2 93 253 5 171 1.02e-68 210
Msa1083210 AT3G56070.2 61.310 168 57 2 93 253 5 171 1.02e-68 210
Msa1083210 AT3G55920.1 53.731 201 75 3 72 255 29 228 5.26e-68 210
Msa1083210 AT2G29960.2 56.684 187 63 3 76 255 16 191 4.62e-66 204
Msa1083210 AT4G34870.1 55.491 173 59 3 93 253 5 171 9.36e-62 192
Msa1083210 AT2G15790.1 56.140 171 67 1 92 254 4 174 5.75e-61 196
Msa1083210 AT3G63400.2 56.000 175 68 2 86 252 1 174 8.72e-61 196
Msa1083210 AT2G38730.1 55.758 165 67 2 95 253 35 199 1.97e-59 187
Msa1083210 AT4G34960.1 52.571 175 76 1 89 256 44 218 2.84e-59 187
Msa1083210 AT3G63400.3 56.000 175 68 2 86 252 1 174 3.14e-59 197
Msa1083210 AT3G63400.4 56.000 175 68 2 86 252 1 174 3.14e-59 197
Msa1083210 AT3G63400.1 56.000 175 68 2 86 252 1 174 3.14e-59 197
Msa1083210 AT2G16600.2 54.601 163 54 3 93 253 6 150 9.44e-58 181
Msa1083210 AT4G34960.2 57.031 128 48 1 89 209 44 171 5.75e-47 154
Msa1083210 AT3G44600.1 55.405 148 61 4 104 250 483 626 1.16e-43 156
Msa1083210 AT2G36130.1 49.315 146 69 4 104 248 17 158 1.93e-39 135
Msa1083210 AT1G01940.1 49.655 145 68 4 104 247 8 148 1.16e-35 125
Msa1083210 AT4G32420.1 43.575 179 84 4 86 252 1 174 1.81e-34 131
Msa1083210 AT4G32420.5 43.575 179 84 4 86 252 1 174 1.81e-34 131
Msa1083210 AT4G32420.3 43.575 179 84 4 86 252 1 174 1.81e-34 131
Msa1083210 AT4G32420.6 43.575 179 84 4 86 252 1 174 1.81e-34 131
Msa1083210 AT4G32420.4 45.455 154 76 1 86 231 1 154 6.18e-34 130
Msa1083210 AT3G22920.1 41.520 171 82 6 93 253 5 167 7.92e-33 120
Msa1083210 AT5G67530.1 45.139 144 74 4 106 248 353 492 1.66e-30 119
Msa1083210 AT4G33060.1 44.755 143 72 6 106 245 22 160 1.07e-25 105
Msa1083210 AT1G53720.2 37.908 153 82 5 104 247 8 156 1.06e-19 87.4
Msa1083210 AT1G53720.1 37.908 153 82 5 104 247 8 156 2.65e-19 87.0
Msa1083210 AT2G47320.1 31.081 148 95 4 106 253 87 227 1.90e-14 70.9
Msa1083210 AT3G66654.4 29.677 155 83 4 104 247 88 227 4.65e-12 64.3
Msa1083210 AT3G66654.2 29.677 155 83 4 104 247 88 227 4.65e-12 64.3
Msa1083210 AT3G66654.3 29.677 155 83 4 104 247 88 227 4.65e-12 64.3
Msa1083210 AT3G66654.1 29.677 155 83 4 104 247 88 227 4.65e-12 64.3
Msa1083210 AT3G66654.5 29.677 155 83 4 104 247 88 227 4.65e-12 64.3

Find 74 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACATGCAAATCATATAAT+TGG 0.143786 7_2:+83500939 None:intergenic
ATCTTTGGGCAGAATCGTTT+TGG 0.218231 7_2:-83502352 Msa1083210:CDS
GCATAAGTATCAACCATCTA+TGG 0.238764 7_2:+83501197 None:intergenic
AATTGACTACCATTGGTATT+AGG 0.256008 7_2:+83501675 None:intergenic
AATCAAAGAATTCATGATTC+AGG 0.260889 7_2:-83502127 Msa1083210:CDS
TAGCCAAGATGTGTTGTCTA+TGG 0.302130 7_2:-83503330 Msa1083210:CDS
ACCTTTGACTCAAGAAGCTT+TGG 0.335511 7_2:+83503540 None:intergenic
AACATGCAAATCATATAATT+GGG 0.349416 7_2:+83500940 None:intergenic
TCACATACCGTGTCACAAAT+TGG 0.359007 7_2:-83503299 Msa1083210:CDS
CTGCAGAATGGATTGTCATT+TGG 0.361297 7_2:-83501080 Msa1083210:three_prime_UTR
GACAATCGACATGTCGTGTT+TGG 0.370445 7_2:-83501327 Msa1083210:CDS
CACCTAACTGCAACAAGAAA+TGG 0.380372 7_2:+83503506 None:intergenic
ACCGGTGGAGCTAGTATCTA+TGG 0.385843 7_2:-83501917 Msa1083210:CDS
CTCAAGAAGCTTTGGTTGGT+TGG 0.392775 7_2:+83503548 None:intergenic
GAAACATTTGGTAGTCACTT+TGG 0.413346 7_2:+83502398 None:intergenic
TTCCATTGGCTGCAGGGAAC+CGG 0.414205 7_2:-83501935 Msa1083210:intron
TAAAATCACATGTTGCTTTG+AGG 0.423621 7_2:-83503256 Msa1083210:CDS
TGCGGAGAACTGCCCATAGA+TGG 0.424005 7_2:-83501210 Msa1083210:CDS
GTGTTTGGACATGTTATTGA+TGG 0.424405 7_2:-83501312 Msa1083210:CDS
TGTTTCTTTGACGTAGAAGC+TGG 0.427261 7_2:-83502381 Msa1083210:CDS
AATTTCCGTGCTTTGTGCAC+AGG 0.435339 7_2:-83502294 Msa1083210:intron
ATCAAAGAATTCATGATTCA+GGG 0.448304 7_2:-83502126 Msa1083210:CDS
TGTGAGGACACTTGAGTCTC+AGG 0.450710 7_2:-83501280 Msa1083210:CDS
TTCTACGTCAAAGAAACATT+TGG 0.450882 7_2:+83502386 None:intergenic
AACCATTTCTTGTTGCAGTT+AGG 0.451429 7_2:-83503508 Msa1083210:five_prime_UTR
GAACCATAGACAACACATCT+TGG 0.462350 7_2:+83503327 None:intergenic
TAATCTTGTGCAGGAGAGAA+AGG 0.477763 7_2:-83502183 Msa1083210:intron
TTCTTTGATTATACGATGGA+AGG 0.485601 7_2:+83502140 None:intergenic
TGAAAATGAGAAAGTGGGTT+GGG 0.490663 7_2:+83503447 None:intergenic
TTCTTGTTGCAGTTAGGTGA+TGG 0.492720 7_2:-83503502 Msa1083210:exon
GCAGTGAAGCATGTTGGTCC+TGG 0.495639 7_2:-83501723 Msa1083210:intron
GAGTGAAAATTGTACTCAAA+CGG 0.500982 7_2:+83501155 None:intergenic
AAACTTGCTAACATGATCAC+TGG 0.501624 7_2:+83501119 None:intergenic
CAAGATCAATTACATATAGT+AGG 0.501803 7_2:-83503208 Msa1083210:CDS
TGGACATGTTATTGATGGAA+TGG 0.518793 7_2:-83501307 Msa1083210:CDS
ACCAAAGCTTCTTGAGTCAA+AGG 0.519131 7_2:-83503541 Msa1083210:five_prime_UTR
GTTTCTTTGACGTAGAAGCT+GGG 0.521245 7_2:-83502380 Msa1083210:CDS
TATCATCGGTTGCTGCAGAA+TGG 0.521965 7_2:-83501092 Msa1083210:three_prime_UTR
TTGACTCAAGAAGCTTTGGT+TGG 0.534342 7_2:+83503544 None:intergenic
CATTGGCTGCAGGGAACCGG+TGG 0.542546 7_2:-83501932 Msa1083210:intron
ACTACCATTGGTATTAGGAC+CGG 0.552266 7_2:+83501680 None:intergenic
CAAACCTGAAAATGAGAAAG+TGG 0.556937 7_2:+83503441 None:intergenic
TAGCAAGTTTGAATTATCAT+CGG 0.557171 7_2:-83501106 Msa1083210:three_prime_UTR
TAGATGGTTGATACTTATGC+GGG 0.564926 7_2:-83501194 Msa1083210:exon
TTTGCCATGCTCAAAACTCC+AGG 0.566786 7_2:+83501705 None:intergenic
ATGTGTTGTCTATGGTTCAA+AGG 0.570074 7_2:-83503322 Msa1083210:CDS
GCTTGCCTGTGCACAAAGCA+CGG 0.576315 7_2:+83502289 None:intergenic
AGATTGAAGCAGTTGAGTTG+AGG 0.584496 7_2:+83503470 None:intergenic
ACCATAGATACTAGCTCCAC+CGG 0.585192 7_2:+83501916 None:intergenic
CTGAAAATGAGAAAGTGGGT+TGG 0.587157 7_2:+83503446 None:intergenic
CCGCAATTAACGATTCTGCA+AGG 0.599554 7_2:+83501228 None:intergenic
AACTTGCTAACATGATCACT+GGG 0.600066 7_2:+83501120 None:intergenic
TGTGCAGGAGAGAAAGGATA+CGG 0.600737 7_2:-83502177 Msa1083210:intron
CATAAGTATCAACCATCTAT+GGG 0.602479 7_2:+83501198 None:intergenic
CTTCTTGCAGTGAAGCATGT+TGG 0.605444 7_2:-83501729 Msa1083210:intron
ACATGCAAATCATATAATTG+GGG 0.608394 7_2:+83500941 None:intergenic
ACTGTAACCAATTTGTGACA+CGG 0.612206 7_2:+83503292 None:intergenic
TGAATTCTTTGATTATACGA+TGG 0.620498 7_2:+83502136 None:intergenic
GAGAAAGGATACGGTTACAA+AGG 0.621131 7_2:-83502168 Msa1083210:CDS
TTTCTTTGACGTAGAAGCTG+GGG 0.628424 7_2:-83502379 Msa1083210:CDS
TTCTTTGACGTAGAAGCTGG+GGG 0.630560 7_2:-83502378 Msa1083210:CDS
CCTTGCAGAATCGTTAATTG+CGG 0.632875 7_2:-83501228 Msa1083210:CDS
TTGAGTCTCAGGAAACAAGC+AGG 0.634425 7_2:-83501269 Msa1083210:CDS
CAGGGAGGAGACTTCACTGA+GGG 0.643258 7_2:-83502108 Msa1083210:CDS
CTAAACATGGACTAGTCATG+AGG 0.657365 7_2:+83500913 None:intergenic
AATGCCGGTCCTAATACCAA+TGG 0.661326 7_2:-83501684 Msa1083210:CDS
ATAGATGGTTGATACTTATG+CGG 0.663955 7_2:-83501195 Msa1083210:exon
TTGATGGAATGGATGTTGTG+AGG 0.678873 7_2:-83501296 Msa1083210:CDS
GAAACTTTAGAAACTAAACA+TGG 0.682882 7_2:+83500900 None:intergenic
AAACCTGAAAATGAGAAAGT+GGG 0.705584 7_2:+83503442 None:intergenic
TCTTGCTCCAAATTGTTGCG+TGG 0.716266 7_2:+83503226 None:intergenic
ACATGTCGATTGTCTAACCA+CGG 0.718954 7_2:+83501336 None:intergenic
AAAGAATTCATGATTCAGGG+AGG 0.735053 7_2:-83502123 Msa1083210:CDS
TCAGGGAGGAGACTTCACTG+AGG 0.753671 7_2:-83502109 Msa1083210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTCAATATATATTATTGA+CGG + chr7_2:83501531-83501550 None:intergenic 10.0%
!!! AAAATGTAAGTTTTTCATTT+TGG - chr7_2:83501317-83501336 Msa1083210:CDS 15.0%
!! TATAAAAAATCATTTCAGAT+AGG + chr7_2:83501861-83501880 None:intergenic 15.0%
!!! GTGTTGAAAATAAATTTTTT+AGG + chr7_2:83502726-83502745 None:intergenic 15.0%
!! GTTATATTTGAATATTAGAT+TGG - chr7_2:83503006-83503025 Msa1083210:intron 15.0%
!! GATTAATGAACAAAAACAAT+TGG + chr7_2:83501088-83501107 None:intergenic 20.0%
!!! AATGTTTGTTTGTTTTTTTC+AGG - chr7_2:83501114-83501133 Msa1083210:three_prime_UTR 20.0%
!!! ATGTTTGTTTGTTTTTTTCA+GGG - chr7_2:83501115-83501134 Msa1083210:three_prime_UTR 20.0%
!!! AAATGAGTAAATAGTCATTT+TGG - chr7_2:83501473-83501492 Msa1083210:intron 20.0%
!! ACTTACTTCTGTAATTTATA+AGG - chr7_2:83501796-83501815 Msa1083210:intron 20.0%
!!! ATGGTTTTATTACTGTTATT+AGG - chr7_2:83502038-83502057 Msa1083210:intron 20.0%
!!! TAACATAGCATTTTAAAGTT+TGG - chr7_2:83502262-83502281 Msa1083210:intron 20.0%
!! CATAGAAACAAATATAACAA+AGG + chr7_2:83502440-83502459 None:intergenic 20.0%
!!! TTAATTACACTGTTTTAAAC+TGG + chr7_2:83502700-83502719 None:intergenic 20.0%
!! AATAAAAAATTGACTACCAT+TGG + chr7_2:83502809-83502828 None:intergenic 20.0%
!!! ATTTTTTATTTGCACTGTTA+AGG - chr7_2:83502819-83502838 Msa1083210:intron 20.0%
!! AACATGCAAATCATATAATT+GGG + chr7_2:83503537-83503556 None:intergenic 20.0%
!! AAACATGCAAATCATATAAT+TGG + chr7_2:83503538-83503557 None:intergenic 20.0%
! CAAGATCAATTACATATAGT+AGG - chr7_2:83501266-83501285 Msa1083210:CDS 25.0%
!!! GTTTTAAAACGAGATTGTTA+TGG + chr7_2:83501435-83501454 None:intergenic 25.0%
! GTCCATAAAATTACTAACAA+AGG - chr7_2:83501658-83501677 Msa1083210:CDS 25.0%
!! GTCCTTTGTTAGTAATTTTA+TGG + chr7_2:83501663-83501682 None:intergenic 25.0%
! TTGTTAATCACAAAAATCGT+TGG - chr7_2:83501958-83501977 Msa1083210:intron 25.0%
! TGAATTCTTTGATTATACGA+TGG + chr7_2:83502341-83502360 None:intergenic 25.0%
! AATCAAAGAATTCATGATTC+AGG - chr7_2:83502347-83502366 Msa1083210:CDS 25.0%
! ATCAAAGAATTCATGATTCA+GGG - chr7_2:83502348-83502367 Msa1083210:CDS 25.0%
!!! TGGTTTTTAAAATTTCTCCT+TGG - chr7_2:83502666-83502685 Msa1083210:intron 25.0%
!!! AGTTTTGAAGTAAAAATAGC+AGG + chr7_2:83502862-83502881 None:intergenic 25.0%
! GCTTAAAAATCAATAATCAC+TGG - chr7_2:83502923-83502942 Msa1083210:intron 25.0%
! AAAAATCAATAATCACTGGT+TGG - chr7_2:83502927-83502946 Msa1083210:intron 25.0%
! TGGTTGTTTATTTACATGAT+TGG - chr7_2:83502947-83502966 Msa1083210:intron 25.0%
! CTTAGCATATACAGAAAATA+AGG + chr7_2:83503040-83503059 None:intergenic 25.0%
! TAGCAAGTTTGAATTATCAT+CGG - chr7_2:83503368-83503387 Msa1083210:intron 25.0%
! ACATGCAAATCATATAATTG+GGG + chr7_2:83503536-83503555 None:intergenic 25.0%
!! GAAACTTTAGAAACTAAACA+TGG + chr7_2:83503577-83503596 None:intergenic 25.0%
AAACCTGAAAATGAGAAAGT+GGG + chr7_2:83501035-83501054 None:intergenic 30.0%
!!! ATTTTCAGGTTTGCACAAAT+GGG - chr7_2:83501043-83501062 Msa1083210:three_prime_UTR 30.0%
!! TAAAATCACATGTTGCTTTG+AGG - chr7_2:83501218-83501237 Msa1083210:CDS 30.0%
AAGGATGTTATGTTATGACA+TGG - chr7_2:83501379-83501398 Msa1083210:intron 30.0%
AGGATGTTATGTTATGACAT+GGG - chr7_2:83501380-83501399 Msa1083210:intron 30.0%
! TTTTGGTCCTTAAATGTTTG+AGG - chr7_2:83501490-83501509 Msa1083210:intron 30.0%
TTTGGTCCTTAAATGTTTGA+GGG - chr7_2:83501491-83501510 Msa1083210:intron 30.0%
GTATCTTTCGTTTGTAACAT+TGG - chr7_2:83501565-83501584 Msa1083210:intron 30.0%
TACTAACAAAGGACACATTT+AGG - chr7_2:83501669-83501688 Msa1083210:CDS 30.0%
ACTAACAAAGGACACATTTA+GGG - chr7_2:83501670-83501689 Msa1083210:CDS 30.0%
GGACGTTTATTATCTTTACA+TGG - chr7_2:83502019-83502038 Msa1083210:intron 30.0%
TTCTACGTCAAAGAAACATT+TGG + chr7_2:83502091-83502110 None:intergenic 30.0%
! CGGAAATTTTCAACTGTTTT+AGG + chr7_2:83502168-83502187 None:intergenic 30.0%
! ATCAAAGGTGCAGAAAAATA+TGG + chr7_2:83502213-83502232 None:intergenic 30.0%
CACATTCAAAAAAGTAATCC+AGG + chr7_2:83502242-83502261 None:intergenic 30.0%
TTCTTTGATTATACGATGGA+AGG + chr7_2:83502337-83502356 None:intergenic 30.0%
CCTTCATTGAAACAAATACA+TGG + chr7_2:83502489-83502508 None:intergenic 30.0%
CCATGTATTTGTTTCAATGA+AGG - chr7_2:83502486-83502505 Msa1083210:intron 30.0%
!! CTAGATTTTTAGATAGTGCT+TGG - chr7_2:83502646-83502665 Msa1083210:intron 30.0%
TTAAACTGGAATTAAAGCCA+AGG + chr7_2:83502686-83502705 None:intergenic 30.0%
AATTGACTACCATTGGTATT+AGG + chr7_2:83502802-83502821 None:intergenic 30.0%
CATAAGTATCAACCATCTAT+GGG + chr7_2:83503279-83503298 None:intergenic 30.0%
! ATAGATGGTTGATACTTATG+CGG - chr7_2:83503279-83503298 Msa1083210:CDS 30.0%
GAGTGAAAATTGTACTCAAA+CGG + chr7_2:83503322-83503341 None:intergenic 30.0%
AACCATTTCTTGTTGCAGTT+AGG - chr7_2:83500966-83500985 Msa1083210:three_prime_UTR 35.0%
! TGAAAATGAGAAAGTGGGTT+GGG + chr7_2:83501030-83501049 None:intergenic 35.0%
CAAACCTGAAAATGAGAAAG+TGG + chr7_2:83501036-83501055 None:intergenic 35.0%
!!! CATTTTCAGGTTTGCACAAA+TGG - chr7_2:83501042-83501061 Msa1083210:three_prime_UTR 35.0%
!!! TTTTCAGGTTTGCACAAATG+GGG - chr7_2:83501044-83501063 Msa1083210:three_prime_UTR 35.0%
ATGTGTTGTCTATGGTTCAA+AGG - chr7_2:83501152-83501171 Msa1083210:three_prime_UTR 35.0%
ACTGTAACCAATTTGTGACA+CGG + chr7_2:83501185-83501204 None:intergenic 35.0%
GTTAGTACAATAATTGTCCC+TGG - chr7_2:83501345-83501364 Msa1083210:intron 35.0%
TTGGTCCTTAAATGTTTGAG+GGG - chr7_2:83501492-83501511 Msa1083210:intron 35.0%
!! ATTTTGATCCCAAATGTGTG+AGG + chr7_2:83501736-83501755 None:intergenic 35.0%
CTGTGTTGTGATTAAGATGT+TGG - chr7_2:83501998-83502017 Msa1083210:intron 35.0%
! GAAACATTTGGTAGTCACTT+TGG + chr7_2:83502079-83502098 None:intergenic 35.0%
TAATCCAGGTACAAGATCAA+AGG + chr7_2:83502228-83502247 None:intergenic 35.0%
AAAGAATTCATGATTCAGGG+AGG - chr7_2:83502351-83502370 Msa1083210:CDS 35.0%
TGAAACAAATACATGGCAAG+TGG + chr7_2:83502482-83502501 None:intergenic 35.0%
CACTCAAAATGTGTTTCCAT+TGG - chr7_2:83502525-83502544 Msa1083210:intron 35.0%
GTGTTTGGACATGTTATTGA+TGG - chr7_2:83503162-83503181 Msa1083210:intron 35.0%
TGGACATGTTATTGATGGAA+TGG - chr7_2:83503167-83503186 Msa1083210:intron 35.0%
GCATAAGTATCAACCATCTA+TGG + chr7_2:83503280-83503299 None:intergenic 35.0%
! TAGATGGTTGATACTTATGC+GGG - chr7_2:83503280-83503299 Msa1083210:CDS 35.0%
!! AACTTGCTAACATGATCACT+GGG + chr7_2:83503357-83503376 None:intergenic 35.0%
!! AAACTTGCTAACATGATCAC+TGG + chr7_2:83503358-83503377 None:intergenic 35.0%
! TTGACTCAAGAAGCTTTGGT+TGG + chr7_2:83500933-83500952 None:intergenic 40.0%
ACCAAAGCTTCTTGAGTCAA+AGG - chr7_2:83500933-83500952 Msa1083210:three_prime_UTR 40.0%
ACCTTTGACTCAAGAAGCTT+TGG + chr7_2:83500937-83500956 None:intergenic 40.0%
CACCTAACTGCAACAAGAAA+TGG + chr7_2:83500971-83500990 None:intergenic 40.0%
TTCTTGTTGCAGTTAGGTGA+TGG - chr7_2:83500972-83500991 Msa1083210:three_prime_UTR 40.0%
! AGATTGAAGCAGTTGAGTTG+AGG + chr7_2:83501007-83501026 None:intergenic 40.0%
CTGAAAATGAGAAAGTGGGT+TGG + chr7_2:83501031-83501050 None:intergenic 40.0%
! CAACCCACTTTCTCATTTTC+AGG - chr7_2:83501029-83501048 Msa1083210:three_prime_UTR 40.0%
! GTTTGCACAAATGGGGTTTT+GGG - chr7_2:83501051-83501070 Msa1083210:three_prime_UTR 40.0%
TAGCCAAGATGTGTTGTCTA+TGG - chr7_2:83501144-83501163 Msa1083210:three_prime_UTR 40.0%
GAACCATAGACAACACATCT+TGG + chr7_2:83501150-83501169 None:intergenic 40.0%
TCACATACCGTGTCACAAAT+TGG - chr7_2:83501175-83501194 Msa1083210:three_prime_UTR 40.0%
! TTTTCTGCCACGCAACAATT+TGG - chr7_2:83501241-83501260 Msa1083210:CDS 40.0%
ATCCTTCAACAACATCTCCA+GGG + chr7_2:83501365-83501384 None:intergenic 40.0%
GACAACCCCTCAAACATTTA+AGG + chr7_2:83501500-83501519 None:intergenic 40.0%
ACTTTAGTGCCTCACACATT+TGG - chr7_2:83501724-83501743 Msa1083210:intron 40.0%
CTTTAGTGCCTCACACATTT+GGG - chr7_2:83501725-83501744 Msa1083210:intron 40.0%
TGTTTCTTTGACGTAGAAGC+TGG - chr7_2:83502093-83502112 Msa1083210:intron 40.0%
GTTTCTTTGACGTAGAAGCT+GGG - chr7_2:83502094-83502113 Msa1083210:intron 40.0%
TTTCTTTGACGTAGAAGCTG+GGG - chr7_2:83502095-83502114 Msa1083210:intron 40.0%
! ATCTTTGGGCAGAATCGTTT+TGG - chr7_2:83502122-83502141 Msa1083210:CDS 40.0%
! TCTTTGGGCAGAATCGTTTT+GGG - chr7_2:83502123-83502142 Msa1083210:CDS 40.0%
!! AGAATCGTTTTGGGCTTGTT+TGG - chr7_2:83502132-83502151 Msa1083210:CDS 40.0%
TGGCTTCAATAATCTTGTGC+AGG - chr7_2:83502282-83502301 Msa1083210:intron 40.0%
TAATCTTGTGCAGGAGAGAA+AGG - chr7_2:83502291-83502310 Msa1083210:intron 40.0%
GAGAAAGGATACGGTTACAA+AGG - chr7_2:83502306-83502325 Msa1083210:CDS 40.0%
AACATGCAACAGAGACATAC+AGG + chr7_2:83502609-83502628 None:intergenic 40.0%
ACTACCATTGGTATTAGGAC+CGG + chr7_2:83502797-83502816 None:intergenic 40.0%
CATGATTGGAAAGCTCACTA+TGG - chr7_2:83502961-83502980 Msa1083210:intron 40.0%
! ATTTTATGATGCAGACTCCG+TGG - chr7_2:83503121-83503140 Msa1083210:intron 40.0%
! ACATGTCGATTGTCTAACCA+CGG + chr7_2:83503141-83503160 None:intergenic 40.0%
TTGATGGAATGGATGTTGTG+AGG - chr7_2:83503178-83503197 Msa1083210:CDS 40.0%
! CGATTCTGCAAGGCTTTTTA+GGG + chr7_2:83503239-83503258 None:intergenic 40.0%
! ACGATTCTGCAAGGCTTTTT+AGG + chr7_2:83503240-83503259 None:intergenic 40.0%
CCTTGCAGAATCGTTAATTG+CGG - chr7_2:83503246-83503265 Msa1083210:CDS 40.0%
!! CTGCAGAATGGATTGTCATT+TGG - chr7_2:83503394-83503413 Msa1083210:intron 40.0%
!! CTAAACATGGACTAGTCATG+AGG + chr7_2:83503564-83503583 None:intergenic 40.0%
! CTCAAGAAGCTTTGGTTGGT+TGG + chr7_2:83500929-83500948 None:intergenic 45.0%
! GGTTTGCACAAATGGGGTTT+TGG - chr7_2:83501050-83501069 Msa1083210:three_prime_UTR 45.0%
TCTTGCTCCAAATTGTTGCG+TGG + chr7_2:83501251-83501270 None:intergenic 45.0%
CATCCTTCAACAACATCTCC+AGG + chr7_2:83501366-83501385 None:intergenic 45.0%
TTCTTTGACGTAGAAGCTGG+GGG - chr7_2:83502096-83502115 Msa1083210:intron 45.0%
AATTTCCGTGCTTTGTGCAC+AGG - chr7_2:83502180-83502199 Msa1083210:intron 45.0%
TGCACCTTTGATCTTGTACC+TGG - chr7_2:83502221-83502240 Msa1083210:intron 45.0%
TGTGCAGGAGAGAAAGGATA+CGG - chr7_2:83502297-83502316 Msa1083210:CDS 45.0%
! AATGTGTTTCCATTGGCTGC+AGG - chr7_2:83502532-83502551 Msa1083210:intron 45.0%
! ATGTGTTTCCATTGGCTGCA+GGG - chr7_2:83502533-83502552 Msa1083210:intron 45.0%
ACCATAGATACTAGCTCCAC+CGG + chr7_2:83502561-83502580 None:intergenic 45.0%
CTTCTTGCAGTGAAGCATGT+TGG - chr7_2:83502745-83502764 Msa1083210:intron 45.0%
TTTGCCATGCTCAAAACTCC+AGG + chr7_2:83502772-83502791 None:intergenic 45.0%
!! GTTTTGAGCATGGCAAATGC+CGG - chr7_2:83502775-83502794 Msa1083210:intron 45.0%
AATGCCGGTCCTAATACCAA+TGG - chr7_2:83502790-83502809 Msa1083210:intron 45.0%
TTGGAAAGCTCACTATGGCA+TGG - chr7_2:83502966-83502985 Msa1083210:intron 45.0%
GACAATCGACATGTCGTGTT+TGG - chr7_2:83503147-83503166 Msa1083210:intron 45.0%
TTGAGTCTCAGGAAACAAGC+AGG - chr7_2:83503205-83503224 Msa1083210:CDS 45.0%
CCGCAATTAACGATTCTGCA+AGG + chr7_2:83503249-83503268 None:intergenic 45.0%
! TATCATCGGTTGCTGCAGAA+TGG - chr7_2:83503382-83503401 Msa1083210:intron 45.0%
GTCCCTGGAGATGTTGTTGA+AGG - chr7_2:83501360-83501379 Msa1083210:intron 50.0%
AGAAGCTGGGGGTCAATCTT+TGG - chr7_2:83502107-83502126 Msa1083210:CDS 50.0%
GAAGCTGGGGGTCAATCTTT+GGG - chr7_2:83502108-83502127 Msa1083210:CDS 50.0%
!! CGTTTTGGGCTTGTTTGGAG+AGG - chr7_2:83502137-83502156 Msa1083210:CDS 50.0%
ACCGGTGGAGCTAGTATCTA+TGG - chr7_2:83502557-83502576 Msa1083210:intron 50.0%
!!! TGGTCCTGGAGTTTTGAGCA+TGG - chr7_2:83502765-83502784 Msa1083210:intron 50.0%
TGTGAGGACACTTGAGTCTC+AGG - chr7_2:83503194-83503213 Msa1083210:CDS 50.0%
GCTTGCCTGTGCACAAAGCA+CGG + chr7_2:83502188-83502207 None:intergenic 55.0%
TCAGGGAGGAGACTTCACTG+AGG - chr7_2:83502365-83502384 Msa1083210:CDS 55.0%
CAGGGAGGAGACTTCACTGA+GGG - chr7_2:83502366-83502385 Msa1083210:CDS 55.0%
! TTCCATTGGCTGCAGGGAAC+CGG - chr7_2:83502539-83502558 Msa1083210:intron 55.0%
GCAGTGAAGCATGTTGGTCC+TGG - chr7_2:83502751-83502770 Msa1083210:intron 55.0%
TGCGGAGAACTGCCCATAGA+TGG - chr7_2:83503264-83503283 Msa1083210:CDS 55.0%
!! CACCGGTTCCCTGCAGCCAA+TGG + chr7_2:83502544-83502563 None:intergenic 65.0%
! CATTGGCTGCAGGGAACCGG+TGG - chr7_2:83502542-83502561 Msa1083210:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 83500888 83503608 83500888 ID=Msa1083210;Name=Msa1083210
chr7_2 mRNA 83500888 83503608 83500888 ID=Msa1083210-mRNA-1;Parent=Msa1083210;Name=Msa1083210-mRNA-1;_AED=0.07;_eAED=0.07;_QI=103|1|1|1|1|1|7|318|257
chr7_2 exon 83500888 83501361 83500888 ID=Msa1083210-mRNA-1:exon:21979;Parent=Msa1083210-mRNA-1
chr7_2 exon 83501656 83501741 83501656 ID=Msa1083210-mRNA-1:exon:21978;Parent=Msa1083210-mRNA-1
chr7_2 exon 83501888 83501942 83501888 ID=Msa1083210-mRNA-1:exon:21977;Parent=Msa1083210-mRNA-1
chr7_2 exon 83502104 83502192 83502104 ID=Msa1083210-mRNA-1:exon:21976;Parent=Msa1083210-mRNA-1
chr7_2 exon 83502295 83502436 83502295 ID=Msa1083210-mRNA-1:exon:21975;Parent=Msa1083210-mRNA-1
chr7_2 exon 83503175 83503360 83503175 ID=Msa1083210-mRNA-1:exon:21974;Parent=Msa1083210-mRNA-1
chr7_2 exon 83503446 83503608 83503446 ID=Msa1083210-mRNA-1:exon:21973;Parent=Msa1083210-mRNA-1
chr7_2 five_prime_UTR 83503506 83503608 83503506 ID=Msa1083210-mRNA-1:five_prime_utr;Parent=Msa1083210-mRNA-1
chr7_2 CDS 83503446 83503505 83503446 ID=Msa1083210-mRNA-1:cds;Parent=Msa1083210-mRNA-1
chr7_2 CDS 83503175 83503360 83503175 ID=Msa1083210-mRNA-1:cds;Parent=Msa1083210-mRNA-1
chr7_2 CDS 83502295 83502436 83502295 ID=Msa1083210-mRNA-1:cds;Parent=Msa1083210-mRNA-1
chr7_2 CDS 83502104 83502192 83502104 ID=Msa1083210-mRNA-1:cds;Parent=Msa1083210-mRNA-1
chr7_2 CDS 83501888 83501942 83501888 ID=Msa1083210-mRNA-1:cds;Parent=Msa1083210-mRNA-1
chr7_2 CDS 83501656 83501741 83501656 ID=Msa1083210-mRNA-1:cds;Parent=Msa1083210-mRNA-1
chr7_2 CDS 83501206 83501361 83501206 ID=Msa1083210-mRNA-1:cds;Parent=Msa1083210-mRNA-1
chr7_2 three_prime_UTR 83500888 83501205 83500888 ID=Msa1083210-mRNA-1:three_prime_utr;Parent=Msa1083210-mRNA-1
Gene Sequence

>Msa1083210

ATGGCGTTTTCATCCTCAACTCAACTGCTTCAATCTCCCAACCCACTTTCTCATTTTCAGGGTAATTTTAGCCAAGATGTGTTGTCTATGGTTCAAAGGTCACATACCGTGTCACAAATTGGTTACAGTAAATCATTGTCATTAAAATCACATGTTGCTTTGAGGTTTTCTGCCACGCAACAATTTGGAGCAAGATCAATTACATATAGTAGGAGAATCACATGTGCAGCTGCTGCTTCAGAAAATGTTCAAGAGCTGCAAGCCAAAGTGACTACCAAATGTTTCTTTGACGTAGAAGCTGGGGGTCAATCTTTGGGCAGAATCGTTTTGGGCTTGTTTGGAGAGGTTGCTCCTAAAACAGTTGAAAATTTCCGTGCTTTGTGCACAGGAGAGAAAGGATACGGTTACAAAGGATGCTCCTTCCATCGTATAATCAAAGAATTCATGATTCAGGGAGGAGACTTCACTGAGGGAAATGGAACCGGTGGAGCTAGTATCTATGGTTCTAGTTTCGAAGATGAGAGTTTTGCCTTGAAGCATGTTGGTCCTGGAGTTTTGAGCATGGCAAATGCCGGTCCTAATACCAATGGTAGTCAATTTTTTATTTGCACTGTTAAGACTCCGTGGTTAGACAATCGACATGTCGTGTTTGGACATGTTATTGATGGAATGGATGTTGTGAGGACACTTGAGTCTCAGGAAACAAGCAGGTTAGATATCCCTAAAAAGCCTTGCAGAATCGTTAATTGCGGAGAACTGCCCATAGATGGTTGA

Protein sequence

>Msa1083210

MAFSSSTQLLQSPNPLSHFQGNFSQDVLSMVQRSHTVSQIGYSKSLSLKSHVALRFSATQQFGARSITYSRRITCAAAASENVQELQAKVTTKCFFDVEAGGQSLGRIVLGLFGEVAPKTVENFRALCTGEKGYGYKGCSFHRIIKEFMIQGGDFTEGNGTGGASIYGSSFEDESFALKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRTLESQETSRLDIPKKPCRIVNCGELPIDG*