Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460930 | XP_003600707.2 | 99.487 | 195 | 1 | 0 | 1 | 195 | 23 | 217 | 1.89e-138 | 395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460930 | sp|Q9LQU5|NUD18_ARATH | 68.987 | 158 | 47 | 1 | 10 | 167 | 1 | 156 | 2.54e-74 | 224 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460930 | A0A396IVT9 | 99.487 | 195 | 1 | 0 | 1 | 195 | 23 | 217 | 9.04e-139 | 395 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0460930 | -0.818011 | 2.448147e-52 | -8.615850e-47 |
| Msa0003930 | Msa0460930 | 0.813075 | 3.074409e-51 | -8.615850e-47 |
| Msa0010020 | Msa0460930 | 0.805584 | 1.243947e-49 | -8.615850e-47 |
| Msa0018620 | Msa0460930 | 0.806753 | 7.058117e-50 | -8.615850e-47 |
| Msa0032370 | Msa0460930 | 0.823246 | 1.535675e-53 | -8.615850e-47 |
| Msa0044020 | Msa0460930 | 0.812575 | 3.957408e-51 | -8.615850e-47 |
| Msa0048000 | Msa0460930 | 0.815414 | 9.357930e-52 | -8.615850e-47 |
| Msa0055150 | Msa0460930 | 0.809044 | 2.298847e-50 | -8.615850e-47 |
| Msa0057140 | Msa0460930 | 0.801794 | 7.609831e-49 | -8.615850e-47 |
| Msa0068760 | Msa0460930 | 0.813328 | 2.706371e-51 | -8.615850e-47 |
| Msa0076000 | Msa0460930 | 0.827017 | 1.973042e-54 | -8.615850e-47 |
| Msa0090030 | Msa0460930 | 0.809334 | 1.992353e-50 | -8.615850e-47 |
| Msa0090590 | Msa0460930 | 0.806215 | 9.167198e-50 | -8.615850e-47 |
| Msa0094010 | Msa0460930 | 0.808887 | 2.482960e-50 | -8.615850e-47 |
| Msa0094920 | Msa0460930 | 0.817112 | 3.903404e-52 | -8.615850e-47 |
| Msa0095380 | Msa0460930 | 0.808655 | 2.783646e-50 | -8.615850e-47 |
| Msa0097990 | Msa0460930 | 0.812599 | 3.909643e-51 | -8.615850e-47 |
| Msa0099510 | Msa0460930 | 0.805798 | 1.121921e-49 | -8.615850e-47 |
| Msa0101880 | Msa0460930 | 0.802257 | 6.113080e-49 | -8.615850e-47 |
| Msa0104610 | Msa0460930 | 0.817194 | 3.741273e-52 | -8.615850e-47 |
| Msa0105420 | Msa0460930 | 0.807459 | 5.003361e-50 | -8.615850e-47 |
| Msa0124340 | Msa0460930 | 0.810384 | 1.183997e-50 | -8.615850e-47 |
| Msa0137040 | Msa0460930 | 0.807852 | 4.129123e-50 | -8.615850e-47 |
| Msa0143240 | Msa0460930 | -0.802475 | 5.512345e-49 | -8.615850e-47 |
| Msa0145950 | Msa0460930 | 0.827303 | 1.685334e-54 | -8.615850e-47 |
| Msa0149000 | Msa0460930 | 0.817436 | 3.300222e-52 | -8.615850e-47 |
| Msa0156650 | Msa0460930 | -0.802469 | 5.528859e-49 | -8.615850e-47 |
| Msa0165300 | Msa0460930 | 0.800023 | 1.750628e-48 | -8.615850e-47 |
| Msa0172350 | Msa0460930 | 0.836485 | 9.102055e-57 | -8.615850e-47 |
| Msa0183830 | Msa0460930 | 0.807184 | 5.721042e-50 | -8.615850e-47 |
| Msa0185590 | Msa0460930 | 0.910748 | 1.323079e-82 | -8.615850e-47 |
| Msa0186890 | Msa0460930 | 0.817384 | 3.391225e-52 | -8.615850e-47 |
| Msa0188630 | Msa0460930 | 0.813979 | 1.945162e-51 | -8.615850e-47 |
| Msa0205850 | Msa0460930 | 0.821300 | 4.345768e-53 | -8.615850e-47 |
| Msa0208810 | Msa0460930 | 0.838484 | 2.798918e-57 | -8.615850e-47 |
| Msa0211650 | Msa0460930 | 0.804891 | 1.737344e-49 | -8.615850e-47 |
| Msa0222920 | Msa0460930 | 0.809980 | 1.446685e-50 | -8.615850e-47 |
| Msa0223290 | Msa0460930 | 0.807325 | 5.340843e-50 | -8.615850e-47 |
| Msa0227400 | Msa0460930 | 0.837398 | 5.321343e-57 | -8.615850e-47 |
| Msa0231880 | Msa0460930 | 0.818262 | 2.148274e-52 | -8.615850e-47 |
| Msa0235890 | Msa0460930 | 0.810309 | 1.228938e-50 | -8.615850e-47 |
| Msa0369570 | Msa0460930 | 0.804833 | 1.787021e-49 | -8.615850e-47 |
| Msa0377530 | Msa0460930 | 0.852088 | 5.804638e-61 | -8.615850e-47 |
| Msa0393950 | Msa0460930 | 0.816277 | 6.007591e-52 | -8.615850e-47 |
| Msa0394400 | Msa0460930 | 0.817706 | 2.868686e-52 | -8.615850e-47 |
| Msa0398640 | Msa0460930 | 0.814654 | 1.380205e-51 | -8.615850e-47 |
| Msa0402330 | Msa0460930 | 0.824391 | 8.280551e-54 | -8.615850e-47 |
| Msa0413450 | Msa0460930 | 0.803952 | 2.727394e-49 | -8.615850e-47 |
| Msa0414950 | Msa0460930 | -0.813316 | 2.722124e-51 | -8.615850e-47 |
| Msa0415810 | Msa0460930 | 0.912046 | 3.048845e-83 | -8.615850e-47 |
| Msa0416400 | Msa0460930 | 0.800054 | 1.724994e-48 | -8.615850e-47 |
| Msa0420000 | Msa0460930 | 0.815056 | 1.124245e-51 | -8.615850e-47 |
| Msa0423360 | Msa0460930 | -0.807814 | 4.205037e-50 | -8.615850e-47 |
| Msa0426330 | Msa0460930 | 0.818738 | 1.676136e-52 | -8.615850e-47 |
| Msa0426810 | Msa0460930 | 0.819101 | 1.386172e-52 | -8.615850e-47 |
| Msa0427200 | Msa0460930 | 0.837601 | 4.722010e-57 | -8.615850e-47 |
| Msa0436280 | Msa0460930 | -0.804746 | 1.863370e-49 | -8.615850e-47 |
| Msa0460930 | Msa0464900 | 0.814911 | 1.210351e-51 | -8.615850e-47 |
| Msa0460930 | Msa0465920 | 0.800581 | 1.347826e-48 | -8.615850e-47 |
| Msa0460930 | Msa0469910 | -0.821204 | 4.572897e-53 | -8.615850e-47 |
| Msa0460930 | Msa0473240 | 0.819347 | 1.218045e-52 | -8.615850e-47 |
| Msa0460930 | Msa0480320 | 0.833258 | 5.913710e-56 | -8.615850e-47 |
| Msa0460930 | Msa0505770 | 0.808349 | 3.235976e-50 | -8.615850e-47 |
| Msa0460930 | Msa0506890 | 0.919124 | 6.656820e-87 | -8.615850e-47 |
| Msa0460930 | Msa0506940 | 0.885839 | 5.753028e-72 | -8.615850e-47 |
| Msa0460930 | Msa0513440 | 0.818993 | 1.466198e-52 | -8.615850e-47 |
| Msa0460930 | Msa0517490 | 0.842434 | 2.592510e-58 | -8.615850e-47 |
| Msa0460930 | Msa0521880 | 0.827722 | 1.337147e-54 | -8.615850e-47 |
| Msa0460930 | Msa0526710 | 0.826714 | 2.330762e-54 | -8.615850e-47 |
| Msa0460930 | Msa0526890 | 0.857497 | 1.567856e-62 | -8.615850e-47 |
| Msa0460930 | Msa0535030 | 0.834855 | 2.353949e-56 | -8.615850e-47 |
| Msa0460930 | Msa0535060 | 0.831773 | 1.380138e-55 | -8.615850e-47 |
| Msa0460930 | Msa0541860 | 0.817828 | 2.693429e-52 | -8.615850e-47 |
| Msa0460930 | Msa0542160 | 0.861130 | 1.273720e-63 | -8.615850e-47 |
| Msa0460930 | Msa0545060 | 0.847822 | 9.067171e-60 | -8.615850e-47 |
| Msa0460930 | Msa0547400 | 0.811121 | 8.203613e-51 | -8.615850e-47 |
| Msa0460930 | Msa0568820 | 0.802154 | 6.419144e-49 | -8.615850e-47 |
| Msa0460930 | Msa0577220 | 0.811288 | 7.544962e-51 | -8.615850e-47 |
| Msa0460930 | Msa0578090 | 0.808415 | 3.132500e-50 | -8.615850e-47 |
| Msa0460930 | Msa0591770 | 0.832549 | 8.873778e-56 | -8.615850e-47 |
| Msa0460930 | Msa0600600 | 0.807615 | 4.635573e-50 | -8.615850e-47 |
| Msa0460930 | Msa0602120 | 0.804125 | 2.510522e-49 | -8.615850e-47 |
| Msa0460930 | Msa0619070 | 0.810364 | 1.195820e-50 | -8.615850e-47 |
| Msa0460930 | Msa0623700 | 0.803284 | 3.750876e-49 | -8.615850e-47 |
| Msa0460930 | Msa0626680 | 0.810439 | 1.151871e-50 | -8.615850e-47 |
| Msa0460930 | Msa0638280 | 0.810720 | 1.001529e-50 | -8.615850e-47 |
| Msa0460930 | Msa0638320 | 0.812152 | 4.894695e-51 | -8.615850e-47 |
| Msa0460930 | Msa0641140 | 0.815949 | 7.111724e-52 | -8.615850e-47 |
| Msa0460930 | Msa0643250 | 0.803963 | 2.711837e-49 | -8.615850e-47 |
| Msa0460930 | Msa0652300 | 0.802416 | 5.669525e-49 | -8.615850e-47 |
| Msa0460930 | Msa0663900 | 0.812481 | 4.147763e-51 | -8.615850e-47 |
| Msa0460930 | Msa0664760 | 0.820330 | 7.262403e-53 | -8.615850e-47 |
| Msa0460930 | Msa0664960 | 0.801224 | 9.958043e-49 | -8.615850e-47 |
| Msa0460930 | Msa0669850 | 0.837355 | 5.458024e-57 | -8.615850e-47 |
| Msa0460930 | Msa0677270 | 0.816429 | 5.555094e-52 | -8.615850e-47 |
| Msa0460930 | Msa0679680 | 0.816921 | 4.309391e-52 | -8.615850e-47 |
| Msa0460930 | Msa0680240 | 0.807391 | 5.172618e-50 | -8.615850e-47 |
| Msa0460930 | Msa0703230 | 0.818014 | 2.444273e-52 | -8.615850e-47 |
| Msa0460930 | Msa0706370 | 0.818760 | 1.657069e-52 | -8.615850e-47 |
| Msa0460930 | Msa0711490 | 0.824667 | 7.129564e-54 | -8.615850e-47 |
| Msa0460930 | Msa0715110 | 0.823015 | 1.738618e-53 | -8.615850e-47 |
| Msa0460930 | Msa0741900 | 0.804992 | 1.654714e-49 | -8.615850e-47 |
| Msa0460930 | Msa0743200 | 0.800095 | 1.692524e-48 | -8.615850e-47 |
| Msa0460930 | Msa0743680 | 0.825629 | 4.224484e-54 | -8.615850e-47 |
| Msa0460930 | Msa0750920 | 0.802490 | 5.472909e-49 | -8.615850e-47 |
| Msa0460930 | Msa0754720 | -0.815007 | 1.152539e-51 | -8.615850e-47 |
| Msa0460930 | Msa0757050 | 0.804582 | 2.015393e-49 | -8.615850e-47 |
| Msa0460930 | Msa0784620 | 0.815416 | 9.347640e-52 | -8.615850e-47 |
| Msa0460930 | Msa0813100 | 0.805829 | 1.104936e-49 | -8.615850e-47 |
| Msa0460930 | Msa0814250 | 0.804965 | 1.677110e-49 | -8.615850e-47 |
| Msa0460930 | Msa0819560 | 0.803603 | 3.221650e-49 | -8.615850e-47 |
| Msa0460930 | Msa0824730 | 0.815738 | 7.925586e-52 | -8.615850e-47 |
| Msa0460930 | Msa0850710 | 0.801235 | 9.906119e-49 | -8.615850e-47 |
| Msa0460930 | Msa0850960 | 0.824815 | 6.578531e-54 | -8.615850e-47 |
| Msa0460930 | Msa0863370 | 0.825083 | 5.687322e-54 | -8.615850e-47 |
| Msa0460930 | Msa0863800 | 0.818924 | 1.520304e-52 | -8.615850e-47 |
| Msa0460930 | Msa0866120 | 0.806210 | 9.189643e-50 | -8.615850e-47 |
| Msa0460930 | Msa0874500 | 0.832626 | 8.490521e-56 | -8.615850e-47 |
| Msa0460930 | Msa0908170 | 0.819506 | 1.120540e-52 | -8.615850e-47 |
| Msa0460930 | Msa0933440 | 0.832384 | 9.745873e-56 | -8.615850e-47 |
| Msa0460930 | Msa0946080 | 0.809559 | 1.782210e-50 | -8.615850e-47 |
| Msa0460930 | Msa0993530 | 0.817410 | 3.345842e-52 | -8.615850e-47 |
| Msa0460930 | Msa1040460 | 0.803511 | 3.366600e-49 | -8.615850e-47 |
| Msa0460930 | Msa1040890 | 0.832746 | 7.928882e-56 | -8.615850e-47 |
| Msa0460930 | Msa1041520 | 0.835674 | 1.462069e-56 | -8.615850e-47 |
| Msa0460930 | Msa1081560 | 0.842856 | 2.002448e-58 | -8.615850e-47 |
| Msa0460930 | Msa1082700 | 0.839608 | 1.431145e-57 | -8.615850e-47 |
| Msa0460930 | Msa1083210 | 0.878398 | 2.900882e-69 | -8.615850e-47 |
| Msa0460930 | Msa1089840 | 0.835111 | 2.029320e-56 | -8.615850e-47 |
| Msa0460930 | Msa1111700 | 0.801837 | 7.457091e-49 | -8.615850e-47 |
| Msa0460930 | Msa1124310 | 0.824282 | 8.784299e-54 | -8.615850e-47 |
| Msa0460930 | Msa1125470 | 0.800081 | 1.703921e-48 | -8.615850e-47 |
| Msa0460930 | Msa1125550 | 0.804124 | 2.510880e-49 | -8.615850e-47 |
| Msa0460930 | Msa1127130 | 0.824182 | 9.272334e-54 | -8.615850e-47 |
| Msa0460930 | Msa1127190 | 0.807713 | 4.417784e-50 | -8.615850e-47 |
| Msa0460930 | Msa1127830 | 0.872679 | 2.642061e-67 | -8.615850e-47 |
| Msa0460930 | Msa1127890 | 0.824607 | 7.365779e-54 | -8.615850e-47 |
| Msa0460930 | Msa1130210 | -0.810848 | 9.400009e-51 | -8.615850e-47 |
| Msa0460930 | Msa1165870 | 0.800523 | 1.384611e-48 | -8.615850e-47 |
| Msa0460930 | Msa1166410 | 0.835730 | 1.415620e-56 | -8.615850e-47 |
| Msa0460930 | Msa1187840 | 0.807476 | 4.961235e-50 | -8.615850e-47 |
| Msa0460930 | Msa1193950 | -0.820249 | 7.579428e-53 | -8.615850e-47 |
| Msa0460930 | Msa1217860 | 0.805381 | 1.372055e-49 | -8.615850e-47 |
| Msa0460930 | Msa1219110 | 0.801136 | 1.037936e-48 | -8.615850e-47 |
| Msa0460930 | Msa1231240 | 0.809412 | 1.916921e-50 | -8.615850e-47 |
| Msa0460930 | Msa1246530 | -0.801953 | 7.059081e-49 | -8.615850e-47 |
| Msa0460930 | Msa1249920 | 0.821238 | 4.490023e-53 | -8.615850e-47 |
| Msa0460930 | Msa1254710 | 0.817924 | 2.561647e-52 | -8.615850e-47 |
| Msa0460930 | Msa1267840 | 0.820099 | 8.201929e-53 | -8.615850e-47 |
| Msa0460930 | Msa1269300 | 0.829696 | 4.455049e-55 | -8.615850e-47 |
| Msa0460930 | Msa1269580 | -0.813940 | 1.984146e-51 | -8.615850e-47 |
| Msa0460930 | Msa1291350 | 0.819913 | 9.045776e-53 | -8.615850e-47 |
| Msa0460930 | Msa1294840 | 0.806816 | 6.845548e-50 | -8.615850e-47 |
| Msa0460930 | Msa1300860 | 0.801930 | 7.135279e-49 | -8.615850e-47 |
| Msa0460930 | Msa1309130 | 0.809120 | 2.213293e-50 | -8.615850e-47 |
| Msa0460930 | Msa1311960 | 0.809799 | 1.583025e-50 | -8.615850e-47 |
| Msa0460930 | Msa1316830 | 0.801396 | 9.185915e-49 | -8.615850e-47 |
| Msa0460930 | Msa1337730 | 0.805986 | 1.024039e-49 | -8.615850e-47 |
| Msa0460930 | Msa1340020 | 0.800246 | 1.576932e-48 | -8.615850e-47 |
| Msa0460930 | Msa1341070 | 0.806989 | 6.293527e-50 | -8.615850e-47 |
| Msa0460930 | Msa1360890 | -0.824416 | 8.168235e-54 | -8.615850e-47 |
| Msa0460930 | Msa1362020 | 0.804041 | 2.613135e-49 | -8.615850e-47 |
| Msa0460930 | Msa1362510 | 0.818632 | 1.771406e-52 | -8.615850e-47 |
| Msa0460930 | Msa1365150 | 0.806310 | 8.751074e-50 | -8.615850e-47 |
| Msa0460930 | Msa1367880 | 0.804880 | 1.747184e-49 | -8.615850e-47 |
| Msa0460930 | Msa1386230 | 0.807481 | 4.948484e-50 | -8.615850e-47 |
| Msa0460930 | Msa1390230 | 0.878029 | 3.907012e-69 | -8.615850e-47 |
| Msa0460930 | Msa1390310 | 0.837756 | 4.307615e-57 | -8.615850e-47 |
| Msa0460930 | Msa1397810 | 0.803110 | 4.075110e-49 | -8.615850e-47 |
| Msa0460930 | Msa1398860 | 0.809722 | 1.644298e-50 | -8.615850e-47 |
| Msa0460930 | Msa1403580 | -0.807643 | 4.573000e-50 | -8.615850e-47 |
| Msa0460930 | Msa1403930 | -0.817043 | 4.046001e-52 | -8.615850e-47 |
| Msa0460930 | Msa1404540 | 0.833664 | 4.684250e-56 | -8.615850e-47 |
| Msa0460930 | Msa1415940 | 0.808751 | 2.655136e-50 | -8.615850e-47 |
| Msa0460930 | Msa1416390 | 0.800889 | 1.166091e-48 | -8.615850e-47 |
| Msa0460930 | Msa1427060 | 0.801807 | 7.564612e-49 | -8.615850e-47 |
| Msa0460930 | Msa1429360 | -0.801193 | 1.010702e-48 | -8.615850e-47 |
| Msa0460930 | Msa1431060 | 0.830151 | 3.450871e-55 | -8.615850e-47 |
| Msa0460930 | Msa1439960 | 0.815771 | 7.793353e-52 | -8.615850e-47 |
| Msa0460930 | Msa1442220 | -0.814975 | 1.171248e-51 | -8.615850e-47 |
| Msa0242680 | Msa0460930 | 0.810796 | 9.645259e-51 | -8.615850e-47 |
| Msa0248980 | Msa0460930 | 0.807783 | 4.270409e-50 | -8.615850e-47 |
| Msa0251250 | Msa0460930 | 0.831082 | 2.042056e-55 | -8.615850e-47 |
| Msa0260210 | Msa0460930 | 0.810588 | 1.069780e-50 | -8.615850e-47 |
| Msa0260810 | Msa0460930 | 0.820071 | 8.322728e-53 | -8.615850e-47 |
| Msa0264570 | Msa0460930 | 0.801150 | 1.031316e-48 | -8.615850e-47 |
| Msa0267760 | Msa0460930 | 0.828797 | 7.361590e-55 | -8.615850e-47 |
| Msa0274360 | Msa0460930 | 0.804598 | 2.000265e-49 | -8.615850e-47 |
| Msa0275400 | Msa0460930 | -0.815163 | 1.064016e-51 | -8.615850e-47 |
| Msa0276920 | Msa0460930 | 0.819384 | 1.194827e-52 | -8.615850e-47 |
| Msa0288730 | Msa0460930 | 0.812575 | 3.957087e-51 | -8.615850e-47 |
| Msa0291520 | Msa0460930 | 0.811184 | 7.946964e-51 | -8.615850e-47 |
| Msa0304290 | Msa0460930 | 0.825947 | 3.550825e-54 | -8.615850e-47 |
| Msa0304330 | Msa0460930 | 0.826743 | 2.293904e-54 | -8.615850e-47 |
| Msa0305890 | Msa0460930 | 0.814784 | 1.291636e-51 | -8.615850e-47 |
| Msa0307830 | Msa0460930 | -0.802142 | 6.454579e-49 | -8.615850e-47 |
| Msa0314210 | Msa0460930 | 0.800574 | 1.352221e-48 | -8.615850e-47 |
| Msa0315240 | Msa0460930 | 0.836780 | 7.656601e-57 | -8.615850e-47 |
| Msa0320100 | Msa0460930 | 0.813983 | 1.941429e-51 | -8.615850e-47 |
| Msa0321190 | Msa0460930 | 0.800630 | 1.316911e-48 | -8.615850e-47 |
| Msa0334040 | Msa0460930 | 0.804719 | 1.887067e-49 | -8.615850e-47 |
| Msa0335040 | Msa0460930 | 0.801080 | 1.066006e-48 | -8.615850e-47 |
| Msa0340810 | Msa0460930 | 0.813189 | 2.903128e-51 | -8.615850e-47 |
| Msa0347360 | Msa0460930 | 0.823630 | 1.248729e-53 | -8.615850e-47 |
| Msa0355270 | Msa0460930 | 0.831896 | 1.287049e-55 | -8.615850e-47 |
| Msa0356890 | Msa0460930 | -0.803465 | 3.441783e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460930 | MtrunA17_Chr3g0110281 | 99.487 | 195 | 1 | 0 | 1 | 195 | 23 | 217 | 1.74e-142 | 395 |
| Msa0460930 | MtrunA17_Chr5g0434521 | 70.984 | 193 | 52 | 2 | 1 | 191 | 1 | 191 | 3.64e-96 | 277 |
| Msa0460930 | MtrunA17_Chr1g0161131 | 66.871 | 163 | 51 | 2 | 10 | 171 | 1 | 161 | 3.42e-74 | 221 |
| Msa0460930 | MtrunA17_Chr8g0391621 | 63.804 | 163 | 56 | 2 | 10 | 171 | 1 | 161 | 2.59e-71 | 213 |
| Msa0460930 | MtrunA17_Chr6g0479111 | 62.500 | 160 | 55 | 3 | 8 | 166 | 70 | 225 | 4.92e-67 | 205 |
| Msa0460930 | MtrunA17_Chr8g0353331 | 51.250 | 160 | 67 | 3 | 13 | 164 | 4 | 160 | 2.17e-48 | 155 |
| Msa0460930 | MtrunA17_Chr7g0252391 | 45.614 | 171 | 84 | 4 | 15 | 177 | 6 | 175 | 4.77e-39 | 133 |
| Msa0460930 | MtrunA17_Chr1g0189471 | 51.562 | 64 | 26 | 2 | 13 | 74 | 4 | 64 | 8.80e-15 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460930 | AT1G14860.1 | 68.987 | 158 | 47 | 1 | 10 | 167 | 1 | 156 | 2.58e-75 | 224 |
| Msa0460930 | AT2G01670.1 | 65.625 | 160 | 53 | 1 | 8 | 167 | 4 | 161 | 8.19e-74 | 221 |
| Msa0460930 | AT1G18300.1 | 64.151 | 159 | 55 | 2 | 8 | 165 | 38 | 195 | 2.77e-71 | 215 |
| Msa0460930 | AT1G73540.1 | 60.870 | 161 | 55 | 3 | 8 | 166 | 39 | 193 | 5.89e-65 | 199 |
| Msa0460930 | AT3G26690.1 | 46.629 | 178 | 81 | 5 | 12 | 177 | 3 | 178 | 5.76e-45 | 148 |
| Msa0460930 | AT3G26690.2 | 46.629 | 178 | 81 | 5 | 12 | 177 | 3 | 178 | 5.76e-45 | 148 |
| Msa0460930 | AT1G12880.1 | 47.879 | 165 | 73 | 4 | 12 | 164 | 3 | 166 | 2.43e-42 | 141 |
| Msa0460930 | AT3G12600.1 | 50.000 | 158 | 72 | 2 | 10 | 160 | 1 | 158 | 9.23e-40 | 134 |
| Msa0460930 | AT3G12600.2 | 50.000 | 146 | 66 | 2 | 22 | 160 | 4 | 149 | 5.58e-36 | 124 |
Find 65 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTTGGTGCAGGGTAAAT+TGG | 0.178727 | 3_3:-58605213 | Msa0460930:intron |
| ATAATGAAACAGAGAGTTTA+AGG | 0.202585 | 3_3:+58606584 | None:intergenic |
| ATAAGTTCTGTTCCCTTTAC+TGG | 0.208033 | 3_3:-58604102 | Msa0460930:three_prime_UTR |
| AAAACTTCTTGAAGTCAATT+AGG | 0.266342 | 3_3:-58604289 | Msa0460930:three_prime_UTR |
| TATATACTATCATAATAATT+TGG | 0.282242 | 3_3:+58604502 | None:intergenic |
| TCTACTTGTTCAAGAGGAAT+TGG | 0.306076 | 3_3:-58605132 | Msa0460930:CDS |
| TGCAGGGTAAATTGGGTAAA+TGG | 0.319017 | 3_3:-58605205 | Msa0460930:intron |
| TTCAAGAGGAATTGGAGTTC+TGG | 0.326630 | 3_3:-58605124 | Msa0460930:CDS |
| AATAATTTGGCTCAATTCAA+TGG | 0.336424 | 3_3:+58604515 | None:intergenic |
| ATTGGATGTTTCAGATGAAT+TGG | 0.336799 | 3_3:-58605966 | Msa0460930:CDS |
| GCATCTCCAATGCAATTTAG+AGG | 0.344908 | 3_3:+58604628 | None:intergenic |
| CCTTACAAAACACACAATAA+TGG | 0.348617 | 3_3:-58606560 | Msa0460930:exon |
| ACACACAATAATGGTTGCTT+TGG | 0.348822 | 3_3:-58606551 | Msa0460930:exon |
| AGACTAGTAAACCGTCTCTT+AGG | 0.352300 | 3_3:-58604685 | Msa0460930:CDS |
| TACCATACAGATATAAGATT+GGG | 0.391619 | 3_3:-58606000 | Msa0460930:CDS |
| TGTGATGTGATTATCATTTG+TGG | 0.395872 | 3_3:-58604128 | Msa0460930:three_prime_UTR |
| ATATATATTAAATGTATTCA+TGG | 0.401816 | 3_3:-58604334 | Msa0460930:three_prime_UTR |
| TGCTTGGTGCAGGGTAAATT+GGG | 0.401857 | 3_3:-58605212 | Msa0460930:intron |
| GTCACATTGGTTTCTCGTAC+TGG | 0.402078 | 3_3:-58606511 | Msa0460930:CDS |
| TCCCCAATCTTATATCTGTA+TGG | 0.410177 | 3_3:+58605998 | None:intergenic |
| ATTATGTTCTTAAAACTACT+TGG | 0.415061 | 3_3:+58604026 | None:intergenic |
| CTGGTGGATGAAAGAGGCTT+TGG | 0.431939 | 3_3:-58604710 | Msa0460930:CDS |
| AAAGGTCGTCGTCAAGTTGT+TGG | 0.437350 | 3_3:-58606466 | Msa0460930:CDS |
| TCTAATATGAAGAAGGGATA+AGG | 0.443747 | 3_3:-58604177 | Msa0460930:three_prime_UTR |
| AAAACCTTCGTCAAAGAAGA+TGG | 0.452927 | 3_3:-58605094 | Msa0460930:CDS |
| CAAAACTTCATCTCCAGTAA+AGG | 0.455325 | 3_3:+58604089 | None:intergenic |
| AAAACTTCATCTCCAGTAAA+GGG | 0.456071 | 3_3:+58604090 | None:intergenic |
| ACATATGATACTTTATATGA+TGG | 0.457732 | 3_3:-58605167 | Msa0460930:CDS |
| AGGTTGAGGAGAAGAATAGT+AGG | 0.461776 | 3_3:-58604540 | Msa0460930:three_prime_UTR |
| ACATCACACAATACAATAAG+TGG | 0.462429 | 3_3:+58604143 | None:intergenic |
| TAACCTCTCTAATATGAAGA+AGG | 0.464022 | 3_3:-58604184 | Msa0460930:three_prime_UTR |
| AAGGTCGTCGTCAAGTTGTT+GGG | 0.471306 | 3_3:-58606465 | Msa0460930:intron |
| GTTTCAAACATCAGGGAGGT+TGG | 0.471979 | 3_3:-58605817 | Msa0460930:intron |
| TTTCAAACATCAGGGAGGTT+GGG | 0.476138 | 3_3:-58605816 | Msa0460930:intron |
| ATACCATACAGATATAAGAT+TGG | 0.489360 | 3_3:-58606001 | Msa0460930:CDS |
| GGAATTAGATGAATCTCAAA+AGG | 0.489420 | 3_3:-58605795 | Msa0460930:CDS |
| CTTGTTATAAGTTCTCAGAA+AGG | 0.498323 | 3_3:-58605938 | Msa0460930:CDS |
| CTACGTCCTCTAAATTGCAT+TGG | 0.502705 | 3_3:-58604634 | Msa0460930:CDS |
| TTGTTAAAAGTGTAATTTCG+TGG | 0.512493 | 3_3:-58604595 | Msa0460930:exon |
| TCAAGAAAATGTTGTCACAT+TGG | 0.512517 | 3_3:-58606524 | Msa0460930:CDS |
| TCAACACTGGTGGATGAAAG+AGG | 0.518367 | 3_3:-58604716 | Msa0460930:CDS |
| TATATATTAAATGTATTCAT+GGG | 0.519572 | 3_3:-58604333 | Msa0460930:three_prime_UTR |
| GAGTTACAACGTTATAGAAA+AGG | 0.522985 | 3_3:-58606484 | Msa0460930:CDS |
| TTACCCATCTTCTTTGACGA+AGG | 0.524824 | 3_3:+58605090 | None:intergenic |
| GTTTCCTCTACTTGTTCAAG+AGG | 0.548107 | 3_3:-58605138 | Msa0460930:CDS |
| AGAGAAACCATGGAGGAAGC+TGG | 0.548494 | 3_3:-58605761 | Msa0460930:CDS |
| ATAAGTTCTCAGAAAGGCAA+AGG | 0.557423 | 3_3:-58605932 | Msa0460930:CDS |
| TCGTACACCAGCTTCCTCCA+TGG | 0.562948 | 3_3:+58605754 | None:intergenic |
| GGCAGCTTTGAGAGAAACCA+TGG | 0.565133 | 3_3:-58605771 | Msa0460930:CDS |
| TAAAAGTGTAATTTCGTGGA+GGG | 0.569228 | 3_3:-58604591 | Msa0460930:exon |
| ATCCCTTCTTCATATTAGAG+AGG | 0.571358 | 3_3:+58604181 | None:intergenic |
| AATTCCTCTTGAACAAGTAG+AGG | 0.573287 | 3_3:+58605134 | None:intergenic |
| TAAGTTCTCAGAAAGGCAAA+GGG | 0.577873 | 3_3:-58605931 | Msa0460930:CDS |
| AAACCTTCGTCAAAGAAGAT+GGG | 0.587211 | 3_3:-58605093 | Msa0460930:intron |
| CAAGAGATGTTTGTCAACAC+TGG | 0.594375 | 3_3:-58604729 | Msa0460930:CDS |
| CAAAGGGATGCTATTTCCAA+AGG | 0.604291 | 3_3:-58605915 | Msa0460930:intron |
| AACCTCTCTAATATGAAGAA+GGG | 0.605647 | 3_3:-58604183 | Msa0460930:three_prime_UTR |
| ATTAGATGAATCTCAAAAGG+AGG | 0.619969 | 3_3:-58605792 | Msa0460930:CDS |
| TTAAAAGTGTAATTTCGTGG+AGG | 0.620018 | 3_3:-58604592 | Msa0460930:exon |
| ATGGAGGAAGCTGGTGTACG+AGG | 0.648306 | 3_3:-58605752 | Msa0460930:CDS |
| GATTTGTGCTAATGTAAGAG+AGG | 0.649109 | 3_3:-58604232 | Msa0460930:three_prime_UTR |
| ACCATACAGATATAAGATTG+GGG | 0.668226 | 3_3:-58605999 | Msa0460930:CDS |
| GAGATGTTTGTCAACACTGG+TGG | 0.687529 | 3_3:-58604726 | Msa0460930:CDS |
| TGGTGTACGAGGCATTGTTG+AGG | 0.717499 | 3_3:-58605741 | Msa0460930:intron |
| AGCTTTGAGAGAAACCATGG+AGG | 0.776762 | 3_3:-58605768 | Msa0460930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATCTTATTTATAATTTTG+TGG | - | chr3_3:58604816-58604835 | Msa0460930:intron | 10.0% |
| !! | TATATATATATATTAAAGTC+TGG | + | chr3_3:58605651-58605670 | None:intergenic | 10.0% |
| !! | TATATACTATCATAATAATT+TGG | + | chr3_3:58606156-58606175 | None:intergenic | 10.0% |
| !!! | CAAAAATAAGTATTTTTTTA+GGG | + | chr3_3:58606232-58606251 | None:intergenic | 10.0% |
| !! | ATATATATTAAATGTATTCA+TGG | - | chr3_3:58606321-58606340 | Msa0460930:intron | 10.0% |
| !! | TATATATTAAATGTATTCAT+GGG | - | chr3_3:58606322-58606341 | Msa0460930:intron | 10.0% |
| !! | TCTGATAAAAAAAATACTAT+TGG | - | chr3_3:58604407-58604426 | Msa0460930:three_prime_UTR | 15.0% |
| !! | CTGATAAAAAAAATACTATT+GGG | - | chr3_3:58604408-58604427 | Msa0460930:three_prime_UTR | 15.0% |
| !! | TCTATTGAATTTAACATTAA+TGG | - | chr3_3:58604590-58604609 | Msa0460930:exon | 15.0% |
| !!! | GATAATTCTCTAAAAATAAT+TGG | - | chr3_3:58605398-58605417 | Msa0460930:intron | 15.0% |
| !! | TAAAAATATTACAGACTAAA+TGG | - | chr3_3:58605709-58605728 | Msa0460930:intron | 15.0% |
| !! | CTAAAAGAATATATTATACT+AGG | + | chr3_3:58605765-58605784 | None:intergenic | 15.0% |
| !!! | CTAGTATAATATATTCTTTT+AGG | - | chr3_3:58605763-58605782 | Msa0460930:CDS | 15.0% |
| !!! | TATTCTTTTAGGAATTAAAT+TGG | - | chr3_3:58605774-58605793 | Msa0460930:CDS | 15.0% |
| !!! | GCAAAAATAAGTATTTTTTT+AGG | + | chr3_3:58606233-58606252 | None:intergenic | 15.0% |
| !!! | AATTTTAAAGATGCACTAAT+TGG | - | chr3_3:58604540-58604559 | Msa0460930:three_prime_UTR | 20.0% |
| !! | ACATATGATACTTTATATGA+TGG | - | chr3_3:58605488-58605507 | Msa0460930:intron | 20.0% |
| !!! | TTTTATAGTTACAACTTACA+CGG | + | chr3_3:58605694-58605713 | None:intergenic | 20.0% |
| !! | TAATTTAGTGACTAAATTGA+CGG | - | chr3_3:58605811-58605830 | Msa0460930:intron | 20.0% |
| !!! | TTGTTATTGATTTTCTGAAA+AGG | - | chr3_3:58605843-58605862 | Msa0460930:intron | 20.0% |
| !!! | TTGTTTGAAACTTTCTATTT+TGG | - | chr3_3:58605878-58605897 | Msa0460930:intron | 20.0% |
| !!! | TGTTTGAAACTTTCTATTTT+GGG | - | chr3_3:58605879-58605898 | Msa0460930:intron | 20.0% |
| ! | ATAATGAAACAGAGAGTTTA+AGG | + | chr3_3:58604074-58604093 | None:intergenic | 25.0% |
| ! | AAAAATTGTGACTTTCATTG+TGG | - | chr3_3:58604290-58604309 | Msa0460930:three_prime_UTR | 25.0% |
| ! | AAAATTGTGACTTTCATTGT+GGG | - | chr3_3:58604291-58604310 | Msa0460930:three_prime_UTR | 25.0% |
| ! | ATAATACCGCTAAATTATCA+CGG | - | chr3_3:58604370-58604389 | Msa0460930:three_prime_UTR | 25.0% |
| ! | ATACCATACAGATATAAGAT+TGG | - | chr3_3:58604654-58604673 | Msa0460930:CDS | 25.0% |
| ! | TACCATACAGATATAAGATT+GGG | - | chr3_3:58604655-58604674 | Msa0460930:CDS | 25.0% |
| ! | GACTAATATCTATATACCTT+TGG | + | chr3_3:58604759-58604778 | None:intergenic | 25.0% |
| !! | GTACGATATCTAGAATAAAT+TGG | + | chr3_3:58604999-58605018 | None:intergenic | 25.0% |
| !!! | ATGAATTGTTTTGAAGAACT+CGG | - | chr3_3:58605084-58605103 | Msa0460930:intron | 25.0% |
| ! | AATAATAGAGTTCGTACAAA+AGG | + | chr3_3:58605151-58605170 | None:intergenic | 25.0% |
| !! | GAAGAATCCTACAATTTTAA+AGG | - | chr3_3:58605368-58605387 | Msa0460930:intron | 25.0% |
| !!! | CATTTAGCCTTTAAAATTGT+AGG | + | chr3_3:58605378-58605397 | None:intergenic | 25.0% |
| !!! | CTACAATTTTAAAGGCTAAA+TGG | - | chr3_3:58605376-58605395 | Msa0460930:intron | 25.0% |
| !! | TCTCTAAAAATAATTGGCTT+TGG | - | chr3_3:58605404-58605423 | Msa0460930:intron | 25.0% |
| ! | ATACTAATGTTACTATTGCT+TGG | - | chr3_3:58605427-58605446 | Msa0460930:intron | 25.0% |
| ! | AATATTACAGACTAAATGGA+TGG | - | chr3_3:58605713-58605732 | Msa0460930:intron | 25.0% |
| !!! | GGATGGATTTTATATACTTA+AGG | - | chr3_3:58605730-58605749 | Msa0460930:intron | 25.0% |
| ! | ATATATTATACTAGGACACA+TGG | + | chr3_3:58605757-58605776 | None:intergenic | 25.0% |
| !!! | GTTTGAAACTTTCTATTTTG+GGG | - | chr3_3:58605880-58605899 | Msa0460930:intron | 25.0% |
| !! | TTGTTAAAAGTGTAATTTCG+TGG | - | chr3_3:58606060-58606079 | Msa0460930:intron | 25.0% |
| !!! | AATTTTTTTTGTGTTGCTTG+AGG | - | chr3_3:58606095-58606114 | Msa0460930:intron | 25.0% |
| !! | AATAATTTGGCTCAATTCAA+TGG | + | chr3_3:58606143-58606162 | None:intergenic | 25.0% |
| !!! | TTTTTTCTCATCTTATGATG+AGG | - | chr3_3:58606278-58606297 | Msa0460930:intron | 25.0% |
| !! | TGAGGATTAATTTTCAATTG+TGG | - | chr3_3:58606296-58606315 | Msa0460930:intron | 25.0% |
| ! | AAAACTTCTTGAAGTCAATT+AGG | - | chr3_3:58606366-58606385 | Msa0460930:intron | 25.0% |
| ! | CCATTATTGTGTGTTTTGTA+AGG | + | chr3_3:58604098-58604117 | None:intergenic | 30.0% |
| CCTTACAAAACACACAATAA+TGG | - | chr3_3:58604095-58604114 | Msa0460930:three_prime_UTR | 30.0% | |
| TCAAGAAAATGTTGTCACAT+TGG | - | chr3_3:58604131-58604150 | Msa0460930:three_prime_UTR | 30.0% | |
| GAGTTACAACGTTATAGAAA+AGG | - | chr3_3:58604171-58604190 | Msa0460930:three_prime_UTR | 30.0% | |
| AAATTGTGACTTTCATTGTG+GGG | - | chr3_3:58604292-58604311 | Msa0460930:three_prime_UTR | 30.0% | |
| !! | GACCACTTTTGATAATTTTG+AGG | - | chr3_3:58604339-58604358 | Msa0460930:three_prime_UTR | 30.0% |
| CACCTCAAAATTATCAAAAG+TGG | + | chr3_3:58604344-58604363 | None:intergenic | 30.0% | |
| GATATACCGTGATAATTTAG+CGG | + | chr3_3:58604379-58604398 | None:intergenic | 30.0% | |
| ACCATACAGATATAAGATTG+GGG | - | chr3_3:58604656-58604675 | Msa0460930:CDS | 30.0% | |
| ATTGGATGTTTCAGATGAAT+TGG | - | chr3_3:58604689-58604708 | Msa0460930:CDS | 30.0% | |
| ! | CTTGTTATAAGTTCTCAGAA+AGG | - | chr3_3:58604717-58604736 | Msa0460930:CDS | 30.0% |
| ! | ATTTTGTGGTTTCAAACATC+AGG | - | chr3_3:58604830-58604849 | Msa0460930:intron | 30.0% |
| ! | TTTTGTGGTTTCAAACATCA+GGG | - | chr3_3:58604831-58604850 | Msa0460930:intron | 30.0% |
| GGAATTAGATGAATCTCAAA+AGG | - | chr3_3:58604860-58604879 | Msa0460930:intron | 30.0% | |
| ATTAGATGAATCTCAAAAGG+AGG | - | chr3_3:58604863-58604882 | Msa0460930:intron | 30.0% | |
| !!! | TGAATTGTTTTGAAGAACTC+GGG | - | chr3_3:58605085-58605104 | Msa0460930:intron | 30.0% |
| TTCAGCAACTAAAATTGTCT+TGG | - | chr3_3:58605264-58605283 | Msa0460930:intron | 30.0% | |
| TTGTAATTGTACCACTGTTA+TGG | - | chr3_3:58605338-58605357 | Msa0460930:intron | 30.0% | |
| ! | CACTTTTAACAAGTCAGATT+TGG | + | chr3_3:58606052-58606071 | None:intergenic | 30.0% |
| ! | TTAAAAGTGTAATTTCGTGG+AGG | - | chr3_3:58606063-58606082 | Msa0460930:intron | 30.0% |
| ! | TAAAAGTGTAATTTCGTGGA+GGG | - | chr3_3:58606064-58606083 | Msa0460930:intron | 30.0% |
| TAACCTCTCTAATATGAAGA+AGG | - | chr3_3:58606471-58606490 | Msa0460930:CDS | 30.0% | |
| AACCTCTCTAATATGAAGAA+GGG | - | chr3_3:58606472-58606491 | Msa0460930:CDS | 30.0% | |
| TCTAATATGAAGAAGGGATA+AGG | - | chr3_3:58606478-58606497 | Msa0460930:CDS | 30.0% | |
| ACATCACACAATACAATAAG+TGG | + | chr3_3:58606515-58606534 | None:intergenic | 30.0% | |
| TGTGATGTGATTATCATTTG+TGG | - | chr3_3:58606527-58606546 | Msa0460930:CDS | 30.0% | |
| AAAACTTCATCTCCAGTAAA+GGG | + | chr3_3:58606568-58606587 | None:intergenic | 30.0% | |
| ACACACAATAATGGTTGCTT+TGG | - | chr3_3:58604104-58604123 | Msa0460930:three_prime_UTR | 35.0% | |
| CCAGTTGAAGAAATGAAAAG+GGG | + | chr3_3:58604230-58604249 | None:intergenic | 35.0% | |
| CCCAGTTGAAGAAATGAAAA+GGG | + | chr3_3:58604231-58604250 | None:intergenic | 35.0% | |
| ! | CCCTTTTCATTTCTTCAACT+GGG | - | chr3_3:58604228-58604247 | Msa0460930:three_prime_UTR | 35.0% |
| ACCCAGTTGAAGAAATGAAA+AGG | + | chr3_3:58604232-58604251 | None:intergenic | 35.0% | |
| ! | CTCAGAGTTTTACAGAATCA+CGG | - | chr3_3:58604441-58604460 | Msa0460930:three_prime_UTR | 35.0% |
| ! | ACGTGATTTTGTCAAACTCA+CGG | - | chr3_3:58604515-58604534 | Msa0460930:three_prime_UTR | 35.0% |
| TCCCCAATCTTATATCTGTA+TGG | + | chr3_3:58604660-58604679 | None:intergenic | 35.0% | |
| GATTGGGGAGAAAAATTCAT+TGG | - | chr3_3:58604671-58604690 | Msa0460930:CDS | 35.0% | |
| ATAAGTTCTCAGAAAGGCAA+AGG | - | chr3_3:58604723-58604742 | Msa0460930:CDS | 35.0% | |
| TAAGTTCTCAGAAAGGCAAA+GGG | - | chr3_3:58604724-58604743 | Msa0460930:CDS | 35.0% | |
| !!! | ACCAAATTGTCTTGTTTTCG+CGG | + | chr3_3:58605184-58605203 | None:intergenic | 35.0% |
| !!! | ATGAGAGCATTAGTGCTTTT+TGG | - | chr3_3:58605234-58605253 | Msa0460930:intron | 35.0% |
| AGCAACTAAAATTGTCTTGG+TGG | - | chr3_3:58605267-58605286 | Msa0460930:intron | 35.0% | |
| CTTCAATTTAGCCATAACAG+TGG | + | chr3_3:58605352-58605371 | None:intergenic | 35.0% | |
| AATTCCTCTTGAACAAGTAG+AGG | + | chr3_3:58605524-58605543 | None:intergenic | 35.0% | |
| TCTACTTGTTCAAGAGGAAT+TGG | - | chr3_3:58605523-58605542 | Msa0460930:intron | 35.0% | |
| AAAACCTTCGTCAAAGAAGA+TGG | - | chr3_3:58605561-58605580 | Msa0460930:intron | 35.0% | |
| AAACCTTCGTCAAAGAAGAT+GGG | - | chr3_3:58605562-58605581 | Msa0460930:intron | 35.0% | |
| ! | CAAGTTTTTGACCTAAGAGA+CGG | + | chr3_3:58605984-58606003 | None:intergenic | 35.0% |
| GATTTGTGCTAATGTAAGAG+AGG | - | chr3_3:58606423-58606442 | Msa0460930:intron | 35.0% | |
| ATCCCTTCTTCATATTAGAG+AGG | + | chr3_3:58606477-58606496 | None:intergenic | 35.0% | |
| ATAAGTTCTGTTCCCTTTAC+TGG | - | chr3_3:58606553-58606572 | Msa0460930:exon | 35.0% | |
| CAAAACTTCATCTCCAGTAA+AGG | + | chr3_3:58606569-58606588 | None:intergenic | 35.0% | |
| !!! | CGAATGAGAGTTTTGTTGAG+TGG | + | chr3_3:58604045-58604064 | None:intergenic | 40.0% |
| ! | CCCCTTTTCATTTCTTCAAC+TGG | - | chr3_3:58604227-58604246 | Msa0460930:three_prime_UTR | 40.0% |
| ! | TGACTTTCATTGTGGGGTTT+TGG | - | chr3_3:58604298-58604317 | Msa0460930:three_prime_UTR | 40.0% |
| ! | CGTGATTTTGTCAAACTCAC+GGG | - | chr3_3:58604516-58604535 | Msa0460930:three_prime_UTR | 40.0% |
| !! | CAAAGGGATGCTATTTCCAA+AGG | - | chr3_3:58604740-58604759 | Msa0460930:CDS | 40.0% |
| TTTCAAACATCAGGGAGGTT+GGG | - | chr3_3:58604839-58604858 | Msa0460930:intron | 40.0% | |
| TCCGCGAAAACAAGACAATT+TGG | - | chr3_3:58605180-58605199 | Msa0460930:CDS | 40.0% | |
| ! | GGTGGTACTAATGTTACTTG+AGG | - | chr3_3:58605285-58605304 | Msa0460930:intron | 40.0% |
| !! | ATGTTACTATTGCTTGGTGC+AGG | - | chr3_3:58605433-58605452 | Msa0460930:intron | 40.0% |
| !! | TGTTACTATTGCTTGGTGCA+GGG | - | chr3_3:58605434-58605453 | Msa0460930:intron | 40.0% |
| TGCAGGGTAAATTGGGTAAA+TGG | - | chr3_3:58605450-58605469 | Msa0460930:intron | 40.0% | |
| GTTTCCTCTACTTGTTCAAG+AGG | - | chr3_3:58605517-58605536 | Msa0460930:intron | 40.0% | |
| TTCAAGAGGAATTGGAGTTC+TGG | - | chr3_3:58605531-58605550 | Msa0460930:intron | 40.0% | |
| !!! | CTTTGACGAAGGTTTTGTTC+AGG | + | chr3_3:58605557-58605576 | None:intergenic | 40.0% |
| TTACCCATCTTCTTTGACGA+AGG | + | chr3_3:58605568-58605587 | None:intergenic | 40.0% | |
| CAAGAGATGTTTGTCAACAC+TGG | - | chr3_3:58605926-58605945 | Msa0460930:CDS | 40.0% | |
| AGACTAGTAAACCGTCTCTT+AGG | - | chr3_3:58605970-58605989 | Msa0460930:CDS | 40.0% | |
| CGTCTCTTAGGTCAAAAACT+TGG | - | chr3_3:58605982-58606001 | Msa0460930:CDS | 40.0% | |
| CTACGTCCTCTAAATTGCAT+TGG | - | chr3_3:58606021-58606040 | Msa0460930:intron | 40.0% | |
| GCATCTCCAATGCAATTTAG+AGG | + | chr3_3:58606030-58606049 | None:intergenic | 40.0% | |
| !!! | TTTTGTGTTGCTTGAGGTTG+AGG | - | chr3_3:58606101-58606120 | Msa0460930:intron | 40.0% |
| AGGTTGAGGAGAAGAATAGT+AGG | - | chr3_3:58606115-58606134 | Msa0460930:intron | 40.0% | |
| !! | GTCACATTGGTTTCTCGTAC+TGG | - | chr3_3:58604144-58604163 | Msa0460930:three_prime_UTR | 45.0% |
| ! | AAAGGTCGTCGTCAAGTTGT+TGG | - | chr3_3:58604189-58604208 | Msa0460930:three_prime_UTR | 45.0% |
| ! | AAGGTCGTCGTCAAGTTGTT+GGG | - | chr3_3:58604190-58604209 | Msa0460930:three_prime_UTR | 45.0% |
| TGTGGTTTCAAACATCAGGG+AGG | - | chr3_3:58604834-58604853 | Msa0460930:intron | 45.0% | |
| GTTTCAAACATCAGGGAGGT+TGG | - | chr3_3:58604838-58604857 | Msa0460930:intron | 45.0% | |
| !! | AGCTTTGAGAGAAACCATGG+AGG | - | chr3_3:58604887-58604906 | Msa0460930:intron | 45.0% |
| !! | TTGCTTGGTGCAGGGTAAAT+TGG | - | chr3_3:58605442-58605461 | Msa0460930:intron | 45.0% |
| !! | TGCTTGGTGCAGGGTAAATT+GGG | - | chr3_3:58605443-58605462 | Msa0460930:intron | 45.0% |
| GAGATGTTTGTCAACACTGG+TGG | - | chr3_3:58605929-58605948 | Msa0460930:CDS | 45.0% | |
| ! | TCAACACTGGTGGATGAAAG+AGG | - | chr3_3:58605939-58605958 | Msa0460930:CDS | 45.0% |
| !!! | AATTTTTTTTCAAAAAAAAA+TGG | + | chr3_3:58604277-58604296 | None:intergenic | 5.0% |
| !! | GGCAGCTTTGAGAGAAACCA+TGG | - | chr3_3:58604884-58604903 | Msa0460930:intron | 50.0% |
| AGAGAAACCATGGAGGAAGC+TGG | - | chr3_3:58604894-58604913 | Msa0460930:intron | 50.0% | |
| !! | TGGTGTACGAGGCATTGTTG+AGG | - | chr3_3:58604914-58604933 | Msa0460930:intron | 50.0% |
| ! | CTGGTGGATGAAAGAGGCTT+TGG | - | chr3_3:58605945-58605964 | Msa0460930:CDS | 50.0% |
| TCGTACACCAGCTTCCTCCA+TGG | + | chr3_3:58604904-58604923 | None:intergenic | 55.0% | |
| ATGGAGGAAGCTGGTGTACG+AGG | - | chr3_3:58604903-58604922 | Msa0460930:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 58604034 | 58606643 | 58604034 | ID=Msa0460930;Name=Msa0460930 |
| chr3_3 | mRNA | 58604034 | 58606643 | 58604034 | ID=Msa0460930-mRNA-1;Parent=Msa0460930;Name=Msa0460930-mRNA-1;_AED=0.13;_eAED=0.13;_QI=80|1|1|1|1|1|5|569|195 |
| chr3_3 | exon | 58604034 | 58604767 | 58604034 | ID=Msa0460930-mRNA-1:exon:12230;Parent=Msa0460930-mRNA-1 |
| chr3_3 | exon | 58605094 | 58605222 | 58605094 | ID=Msa0460930-mRNA-1:exon:12229;Parent=Msa0460930-mRNA-1 |
| chr3_3 | exon | 58605742 | 58605825 | 58605742 | ID=Msa0460930-mRNA-1:exon:12228;Parent=Msa0460930-mRNA-1 |
| chr3_3 | exon | 58605916 | 58606027 | 58605916 | ID=Msa0460930-mRNA-1:exon:12227;Parent=Msa0460930-mRNA-1 |
| chr3_3 | exon | 58606466 | 58606643 | 58606466 | ID=Msa0460930-mRNA-1:exon:12226;Parent=Msa0460930-mRNA-1 |
| chr3_3 | five_prime_UTR | 58606564 | 58606643 | 58606564 | ID=Msa0460930-mRNA-1:five_prime_utr;Parent=Msa0460930-mRNA-1 |
| chr3_3 | CDS | 58606466 | 58606563 | 58606466 | ID=Msa0460930-mRNA-1:cds;Parent=Msa0460930-mRNA-1 |
| chr3_3 | CDS | 58605916 | 58606027 | 58605916 | ID=Msa0460930-mRNA-1:cds;Parent=Msa0460930-mRNA-1 |
| chr3_3 | CDS | 58605742 | 58605825 | 58605742 | ID=Msa0460930-mRNA-1:cds;Parent=Msa0460930-mRNA-1 |
| chr3_3 | CDS | 58605094 | 58605222 | 58605094 | ID=Msa0460930-mRNA-1:cds;Parent=Msa0460930-mRNA-1 |
| chr3_3 | CDS | 58604603 | 58604767 | 58604603 | ID=Msa0460930-mRNA-1:cds;Parent=Msa0460930-mRNA-1 |
| chr3_3 | three_prime_UTR | 58604034 | 58604602 | 58604034 | ID=Msa0460930-mRNA-1:three_prime_utr;Parent=Msa0460930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
