AlfalfaGEDB | Msa1040550

M. sativa cultivar zhongmu-4 / Msa1040550

KEGG: K12126
GO: -
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1040550	XP_003626080.1	91.623	191	13	2	4	191	183	373	4.90e-111	332

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1040550	sp\|Q0JNI9\|PIL15_ORYSJ	59.000	100	35	2	3	102	361	454	6.25e-31	121

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1040550	G7KUN6	91.623	191	13	2	4	191	183	373	2.34e-111	332

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TFs/TRs:

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Gene ID	Type	Classification
Msa1040550	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0526970	Msa1040550	0.835041	2.113658e-56	-8.615850e-47
Msa1040550	Msa1083000	0.911580	5.175960e-83	-8.615850e-47
Msa1040550	Msa1127740	0.801729	7.849850e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1040550	MtrunA17_Chr7g0270871	91.623	191	13	2	4	191	183	373	4.51e-115	332
Msa1040550	MtrunA17_Chr1g0193321	55.172	116	45	2	5	120	444	552	6.21e-32	121
Msa1040550	MtrunA17_Chr1g0182791	64.000	75	27	0	14	88	308	382	2.44e-27	107
Msa1040550	MtrunA17_Chr7g0271251	50.000	134	51	5	6	131	413	538	1.49e-25	102
Msa1040550	MtrunA17_Chr3g0095391	46.018	113	52	4	3	112	290	396	1.47e-23	96.7
Msa1040550	MtrunA17_Chr7g0262691	55.056	89	33	2	6	88	236	323	5.89e-23	95.1
Msa1040550	MtrunA17_Chr1g0153241	35.567	194	85	7	3	180	67	236	1.83e-21	88.6
Msa1040550	MtrunA17_Chr5g0402031	56.716	67	29	0	32	98	114	180	6.03e-20	85.5
Msa1040550	MtrunA17_Chr4g0074161	44.578	83	45	1	8	89	190	272	2.53e-17	79.0
Msa1040550	MtrunA17_Chr1g0190731	48.529	68	34	1	23	89	192	259	2.02e-16	75.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1040550	AT1G09530.3	58.889	90	36	1	5	94	320	408	4.86e-29	112
Msa1040550	AT1G09530.2	58.889	90	36	1	5	94	320	408	4.86e-29	112
Msa1040550	AT1G09530.5	58.889	90	36	1	5	94	320	408	4.86e-29	112
Msa1040550	AT1G09530.1	58.889	90	36	1	5	94	320	408	4.86e-29	112
Msa1040550	AT1G09530.4	58.889	90	36	1	5	94	320	408	4.86e-29	112
Msa1040550	AT1G09530.6	58.889	90	36	1	5	94	320	408	4.86e-29	112
Msa1040550	AT2G46970.2	41.916	167	82	5	4	167	179	333	8.76e-29	110
Msa1040550	AT2G46970.3	41.916	167	82	5	4	167	188	342	1.26e-28	110
Msa1040550	AT2G46970.1	41.916	167	82	5	4	167	210	364	1.39e-28	110
Msa1040550	AT2G20180.7	41.250	160	89	2	6	165	190	344	4.01e-28	108

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Find 115 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGACATTTGATATGT+TGG	0.414165	7_1:-77930658	Msa1040550:three_prime_UTR
AAAAGAGGTCGGTGTTGGTG+TGG	0.664019	7_1:+77930796	None:intergenic
AAACAACGTACACAAACTTT+AGG	0.416300	7_1:-77932461	Msa1040550:five_prime_UTR
AAAGAAAAGCCAGCTCATAA+TGG	0.458159	7_1:-77931606	Msa1040550:CDS
AAAGAGACATTTGATATGTT+GGG	0.434907	7_1:-77930657	Msa1040550:three_prime_UTR
AAATTCATAATTTATCTGAA+AGG	0.531125	7_1:-77931551	Msa1040550:CDS
AACATATAAGTGAGCGGAAA+AGG	0.400492	7_1:+77930323	None:intergenic
AACATCATAAAATGATTAAC+TGG	0.360190	7_1:+77931034	None:intergenic
AACGACAGAGTTCAGATGTT+TGG	0.380475	7_1:-77930896	Msa1040550:CDS
AATCAACCTGGAAGGACATG+TGG	0.668906	7_1:-77930764	Msa1040550:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAACGTACACAAACTTT+AGG	-	chr7_1:77930118-77930137	Msa1040550:three_prime_UTR	30.0%
CATGTTGCTAATGAAGTAAA+TGG	+	chr7_1:77930166-77930185	None:intergenic	30.0%
TTCATATGCAGAGTTTGATT+TGG	+	chr7_1:77930532-77930551	None:intergenic	30.0%
TTTCTCTTTCCTCTAATTCT+AGG	+	chr7_1:77930621-77930640	None:intergenic	30.0%
ACCAAAGTTTAGATCATTTG+AGG	+	chr7_1:77930703-77930722	None:intergenic	30.0%
ACTTAAATATGGAGAGTCAT+CGG	+	chr7_1:77930748-77930767	None:intergenic	30.0%
ATAATTTATCTGAAAGGGTG+AGG	-	chr7_1:77931034-77931053	Msa1040550:CDS	30.0%
TCACATACCTTATTGCAATT+TGG	+	chr7_1:77931212-77931231	None:intergenic	30.0%
ATTCATGTTCATATGATGTG+CGG	+	chr7_1:77931573-77931592	None:intergenic	30.0%
TATGAATGCACAACATTTGA+TGG	-	chr7_1:77931598-77931617	Msa1040550:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	77930075	77932526	77930075	ID=Msa1040550;Name=Msa1040550
chr7_1	mRNA	77930075	77932526	77930075	ID=Msa1040550-mRNA-1;Parent=Msa1040550;Name=Msa1040550-mRNA-1;_AED=0.01;_eAED=0.01;_QI=859\|1\|1\|1\|1\|1\|4\|685\|191
chr7_1	exon	77930075	77931086	77930075	ID=Msa1040550-mRNA-1:exon:20692;Parent=Msa1040550-mRNA-1
chr7_1	exon	77931191	77931256	77931191	ID=Msa1040550-mRNA-1:exon:20691;Parent=Msa1040550-mRNA-1
chr7_1	exon	77931378	77931443	77931378	ID=Msa1040550-mRNA-1:exon:20690;Parent=Msa1040550-mRNA-1
chr7_1	exon	77931551	77932526	77931551	ID=Msa1040550-mRNA-1:exon:20689;Parent=Msa1040550-mRNA-1
chr7_1	five_prime_UTR	77931668	77932526	77931668	ID=Msa1040550-mRNA-1:five_prime_utr;Parent=Msa1040550-mRNA-1
chr7_1	CDS	77931551	77931667	77931551	ID=Msa1040550-mRNA-1:cds;Parent=Msa1040550-mRNA-1
chr7_1	CDS	77931378	77931443	77931378	ID=Msa1040550-mRNA-1:cds;Parent=Msa1040550-mRNA-1
chr7_1	CDS	77931191	77931256	77931191	ID=Msa1040550-mRNA-1:cds;Parent=Msa1040550-mRNA-1
chr7_1	CDS	77930760	77931086	77930760	ID=Msa1040550-mRNA-1:cds;Parent=Msa1040550-mRNA-1
chr7_1	three_prime_UTR	77930075	77930759	77930075	ID=Msa1040550-mRNA-1:three_prime_utr;Parent=Msa1040550-mRNA-1

Gene Sequence

>Msa1040550

ATGTTGCAGAATGATGAAGAAACACAAGAAAATACGGTGAAAGAAAAGCCAGCTCATAATGGAAACAGAGTCAAGAGAAGCTACAGGAATACAAAAATTCATAATTTATCTGAAAGGAAGAGAAGAGATAAAATTAATGAGAAAATACGTGCATTGAAAGAGCTCATACCAAATTGCAATAAGATGGACAAAGCTTCAATGCTTGACGATGCAATCGATTATCTTAAGACCCTCAAGCTTCAGTTACAGATTATGTCAATGGGAAGAGCACTTTGTATGCCAGTTAATCATTTTATGATGTTACCCGCACATCATATGAACATGAATATGAATATGAATGCACAACATTTGATGGGTTTCAGGCCACAAATACAGTTTCCTATTCCACAAATGGGTGATGGTGTCACAAACAATAACAACGACAGAGTTCAGATGTTTGGTTTCTCCAACCAATTACCACCACACATGTCAATTCCCAATGCACCTTTCATTCCTCCTATCATTGGAAACTCTTCCACCACACCAACACCGACCTCTTTTGGTAACCAGAATCAACCTGGAAGGACATGTGGCTAG

Protein sequence

>Msa1040550

MLQNDEETQENTVKEKPAHNGNRVKRSYRNTKIHNLSERKRRDKINEKIRALKELIPNCNKMDKASMLDDAIDYLKTLKLQLQIMSMGRALCMPVNHFMMLPAHHMNMNMNMNAQHLMGFRPQIQFPIPQMGDGVTNNNNDRVQMFGFSNQLPPHMSIPNAPFIPPIIGNSSTTPTPTSFGNQNQPGRTCG*