AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1040550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1040550 MtrunA17_Chr7g0270871 91.623 191 13 2 4 191 183 373 4.51e-115 332
Msa1040550 MtrunA17_Chr1g0193321 55.172 116 45 2 5 120 444 552 6.21e-32 121
Msa1040550 MtrunA17_Chr1g0182791 64.000 75 27 0 14 88 308 382 2.44e-27 107
Msa1040550 MtrunA17_Chr7g0271251 50.000 134 51 5 6 131 413 538 1.49e-25 102
Msa1040550 MtrunA17_Chr3g0095391 46.018 113 52 4 3 112 290 396 1.47e-23 96.7
Msa1040550 MtrunA17_Chr7g0262691 55.056 89 33 2 6 88 236 323 5.89e-23 95.1
Msa1040550 MtrunA17_Chr1g0153241 35.567 194 85 7 3 180 67 236 1.83e-21 88.6
Msa1040550 MtrunA17_Chr5g0402031 56.716 67 29 0 32 98 114 180 6.03e-20 85.5
Msa1040550 MtrunA17_Chr4g0074161 44.578 83 45 1 8 89 190 272 2.53e-17 79.0
Msa1040550 MtrunA17_Chr1g0190731 48.529 68 34 1 23 89 192 259 2.02e-16 75.9
Msa1040550 MtrunA17_Chr7g0231461 50.000 80 36 2 9 85 281 359 2.53e-16 76.3
Msa1040550 MtrunA17_Chr1g0152131 44.156 77 41 2 23 98 261 336 8.73e-14 68.6
Msa1040550 MtrunA17_Chr3g0134741 46.377 69 35 1 20 86 224 292 6.96e-13 65.9
Msa1040550 MtrunA17_Chr4g0035101 41.250 80 45 2 16 94 137 215 1.46e-12 65.1
Msa1040550 MtrunA17_Chr5g0421111 42.857 70 39 1 26 94 368 437 2.20e-12 64.7
Msa1040550 MtrunA17_Chr1g0174161 33.913 115 68 4 23 133 161 271 2.32e-12 64.3
Msa1040550 MtrunA17_Chr8g0365941 42.105 76 43 1 26 100 308 383 2.92e-12 64.3
Msa1040550 MtrunA17_Chr3g0144641 36.207 116 63 4 26 130 194 309 3.50e-12 63.9
Msa1040550 MtrunA17_Chr8g0363921 42.857 63 35 1 26 87 154 216 3.73e-12 63.5
Msa1040550 MtrunA17_Chr8g0346151 44.643 56 31 0 34 89 280 335 5.74e-12 63.5
Msa1040550 MtrunA17_Chr4g0002781 44.872 78 43 0 6 83 147 224 5.88e-12 63.2
Msa1040550 MtrunA17_Chr4g0054581 44.118 68 38 0 18 85 183 250 6.05e-12 63.2
Msa1040550 MtrunA17_Chr7g0234761 43.478 69 37 2 23 90 318 385 9.03e-12 63.2
Msa1040550 MtrunA17_Chr8g0339091 44.444 63 34 1 26 87 294 356 9.28e-12 62.8
Msa1040550 MtrunA17_Chr7g0258161 33.333 126 58 4 23 126 174 295 1.04e-11 62.4
Msa1040550 MtrunA17_Chr5g0415291 42.857 63 35 1 26 87 115 177 1.10e-11 61.6
Msa1040550 MtrunA17_Chr3g0134001 49.180 61 27 1 29 85 173 233 1.26e-11 62.0
Msa1040550 MtrunA17_Chr1g0207301 34.667 75 42 1 39 113 304 371 1.55e-11 62.0
Msa1040550 MtrunA17_Chr8g0384141 47.541 61 28 1 29 85 116 176 1.94e-11 61.2
Msa1040550 MtrunA17_Chr1g0207311 33.735 83 48 1 31 113 204 279 1.97e-11 61.2
Msa1040550 MtrunA17_Chr7g0275821 48.214 56 29 0 34 89 253 308 2.44e-11 61.6
Msa1040550 MtrunA17_Chr8g0385911 35.714 84 53 1 13 95 135 218 2.94e-11 61.2
Msa1040550 MtrunA17_Chr5g0400621 41.026 78 46 0 9 86 133 210 3.86e-11 60.8
Msa1040550 MtrunA17_Chr1g0152651 35.714 84 54 0 3 86 254 337 4.36e-11 60.8
Msa1040550 MtrunA17_Chr8g0366751 42.029 69 40 0 15 83 444 512 4.86e-11 60.8
Msa1040550 MtrunA17_Chr5g0400661 42.857 63 36 0 23 85 139 201 6.96e-11 60.1
Msa1040550 MtrunA17_Chr3g0131771 35.714 84 53 1 5 87 129 212 7.86e-11 60.1
Msa1040550 MtrunA17_Chr8g0346161 48.000 50 26 0 34 83 292 341 9.74e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1040550 AT1G09530.3 58.889 90 36 1 5 94 320 408 4.86e-29 112
Msa1040550 AT1G09530.2 58.889 90 36 1 5 94 320 408 4.86e-29 112
Msa1040550 AT1G09530.5 58.889 90 36 1 5 94 320 408 4.86e-29 112
Msa1040550 AT1G09530.1 58.889 90 36 1 5 94 320 408 4.86e-29 112
Msa1040550 AT1G09530.4 58.889 90 36 1 5 94 320 408 4.86e-29 112
Msa1040550 AT1G09530.6 58.889 90 36 1 5 94 320 408 4.86e-29 112
Msa1040550 AT2G46970.2 41.916 167 82 5 4 167 179 333 8.76e-29 110
Msa1040550 AT2G46970.3 41.916 167 82 5 4 167 188 342 1.26e-28 110
Msa1040550 AT2G46970.1 41.916 167 82 5 4 167 210 364 1.39e-28 110
Msa1040550 AT2G20180.7 41.250 160 89 2 6 165 190 344 4.01e-28 108
Msa1040550 AT2G20180.1 41.250 160 89 2 6 165 190 344 4.01e-28 108
Msa1040550 AT2G20180.5 41.250 160 89 2 6 165 190 344 4.01e-28 108
Msa1040550 AT2G20180.4 41.250 160 89 2 6 165 261 415 1.26e-27 108
Msa1040550 AT2G20180.6 41.250 160 89 2 6 165 261 415 1.26e-27 108
Msa1040550 AT2G20180.2 41.250 160 89 2 6 165 261 415 1.26e-27 108
Msa1040550 AT2G20180.3 41.250 160 89 2 6 165 261 415 1.26e-27 108
Msa1040550 AT2G20180.8 53.165 79 37 0 6 84 261 339 3.48e-23 94.7
Msa1040550 AT4G28800.1 42.105 133 68 5 7 135 234 361 6.88e-23 95.1
Msa1040550 AT4G28790.1 40.299 134 68 4 6 135 255 380 3.65e-21 90.1
Msa1040550 AT5G67110.1 47.000 100 51 2 14 112 79 177 7.13e-21 86.3
Msa1040550 AT3G59060.1 37.173 191 97 9 8 182 236 419 1.61e-20 88.6
Msa1040550 AT3G59060.3 39.053 169 85 7 8 162 236 400 2.95e-20 87.8
Msa1040550 AT3G59060.2 39.053 169 85 7 8 162 236 400 2.95e-20 87.8
Msa1040550 AT3G59060.4 39.053 169 85 7 8 162 236 400 2.95e-20 87.8
Msa1040550 AT4G36930.1 56.338 71 26 1 29 94 197 267 5.59e-20 86.3
Msa1040550 AT4G28800.2 41.739 115 61 3 21 135 259 367 2.36e-19 85.1
Msa1040550 AT2G43010.1 66.667 60 20 0 26 85 254 313 3.29e-18 81.6
Msa1040550 AT2G43010.2 66.667 60 20 0 26 85 254 313 3.36e-18 81.6
Msa1040550 AT2G43010.3 66.667 60 20 0 26 85 261 320 4.01e-18 81.6
Msa1040550 AT2G43010.4 66.667 60 20 0 26 85 254 313 4.32e-18 81.3
Msa1040550 AT2G24260.2 53.125 64 30 0 26 89 38 101 5.61e-18 79.3
Msa1040550 AT2G43010.5 66.667 60 20 0 26 85 296 355 6.36e-18 81.3
Msa1040550 AT4G28815.2 41.758 91 36 2 21 111 66 139 1.04e-17 78.2
Msa1040550 AT2G24260.1 46.835 79 42 0 11 89 126 204 1.07e-17 79.7
Msa1040550 AT4G00050.2 54.667 75 31 2 14 86 95 168 1.77e-17 78.6
Msa1040550 AT4G00050.3 54.667 75 31 2 14 86 197 270 2.57e-17 79.0
Msa1040550 AT4G00050.1 54.667 75 31 2 14 86 197 270 2.80e-17 79.0
Msa1040550 AT4G28815.1 41.758 91 36 2 21 111 142 215 3.10e-17 78.2
Msa1040550 AT4G30980.1 51.562 64 31 0 26 89 133 196 4.27e-17 77.8
Msa1040550 AT3G62090.1 36.257 171 98 7 17 183 159 322 4.57e-17 78.2
Msa1040550 AT3G62090.2 36.257 171 98 7 17 183 176 339 4.95e-17 78.2
Msa1040550 AT5G58010.1 44.578 83 40 2 8 89 88 165 6.34e-17 77.0
Msa1040550 AT4G30980.2 50.746 67 32 1 23 89 179 244 8.69e-17 77.4
Msa1040550 AT4G28790.2 48.718 78 39 1 6 83 255 331 1.40e-16 76.6
Msa1040550 AT5G50915.3 40.449 89 51 2 9 95 121 209 1.81e-13 67.4
Msa1040550 AT5G50915.4 40.449 89 51 2 9 95 121 209 1.81e-13 67.4
Msa1040550 AT1G10120.2 43.011 93 48 4 4 94 189 278 2.39e-13 67.8
Msa1040550 AT1G10120.1 43.011 93 48 4 4 94 189 278 2.39e-13 67.8
Msa1040550 AT5G50915.1 40.449 89 51 2 9 95 121 209 2.89e-13 67.0
Msa1040550 AT5G50915.2 40.449 89 51 2 9 95 121 209 2.89e-13 67.0
Msa1040550 AT4G28811.1 47.126 87 41 2 4 86 329 414 3.46e-13 67.4
Msa1040550 AT1G68920.3 41.558 77 43 2 23 98 303 378 1.49e-12 65.5
Msa1040550 AT1G68920.1 41.558 77 43 2 23 98 304 379 1.56e-12 65.5
Msa1040550 AT1G68920.4 41.558 77 43 2 23 98 304 379 1.56e-12 65.5
Msa1040550 AT1G68920.2 41.558 77 43 2 23 98 304 379 1.56e-12 65.5
Msa1040550 AT5G61270.2 44.706 85 43 1 3 87 56 136 1.92e-12 64.7
Msa1040550 AT5G61270.3 44.706 85 43 1 3 87 56 136 1.92e-12 64.7
Msa1040550 AT1G02340.1 40.698 86 38 2 1 86 119 191 1.92e-12 64.7
Msa1040550 AT1G02340.2 40.698 86 38 2 1 86 112 184 2.06e-12 64.7
Msa1040550 AT1G26260.5 36.458 96 57 3 4 98 185 277 2.28e-12 65.1
Msa1040550 AT1G25330.1 40.476 84 45 3 23 102 105 187 2.42e-12 63.5
Msa1040550 AT1G26260.4 36.458 96 57 3 4 98 207 299 2.51e-12 64.7
Msa1040550 AT1G26260.1 36.458 96 57 3 4 98 207 299 2.51e-12 64.7
Msa1040550 AT1G26260.6 36.458 96 57 3 4 98 207 299 2.51e-12 64.7
Msa1040550 AT1G26260.2 36.458 96 57 3 4 98 207 299 2.51e-12 64.7
Msa1040550 AT5G61270.1 44.706 85 43 1 3 87 144 224 2.85e-12 64.7
Msa1040550 AT4G34530.1 37.931 87 52 2 15 100 165 250 3.55e-12 64.3
Msa1040550 AT4G36540.1 36.364 88 54 2 8 94 127 213 4.28e-12 63.9
Msa1040550 AT1G26260.3 36.458 96 57 3 4 98 156 248 4.73e-12 63.9
Msa1040550 AT4G36540.2 36.364 88 54 2 8 94 127 213 4.80e-12 63.5
Msa1040550 AT3G23690.1 40.260 77 44 2 23 98 192 267 5.66e-12 63.9
Msa1040550 AT1G59640.1 37.349 83 50 2 7 87 119 201 5.78e-12 63.2
Msa1040550 AT5G62610.2 46.032 63 33 1 26 87 156 218 6.80e-12 63.2
Msa1040550 AT5G62610.1 46.032 63 33 1 26 87 156 218 6.80e-12 63.2
Msa1040550 AT2G18300.2 41.096 73 41 2 23 94 186 257 1.15e-11 62.8
Msa1040550 AT2G46510.1 50.000 52 26 0 34 85 396 447 1.17e-11 63.2
Msa1040550 AT2G18300.1 41.429 70 40 1 26 94 188 257 1.20e-11 62.8
Msa1040550 AT3G07340.2 37.931 87 52 2 3 87 237 323 1.30e-11 62.8
Msa1040550 AT5G48560.2 44.444 63 34 1 26 87 304 366 1.46e-11 62.8
Msa1040550 AT5G48560.1 44.444 63 34 1 26 87 304 366 1.46e-11 62.8
Msa1040550 AT5G43175.1 35.443 79 44 1 34 112 143 214 1.58e-11 61.2
Msa1040550 AT2G18300.3 41.429 70 40 1 26 94 188 257 1.66e-11 62.4
Msa1040550 AT3G07340.1 44.444 63 34 1 26 87 261 323 1.70e-11 62.4
Msa1040550 AT1G59640.2 37.349 83 50 2 7 87 119 201 1.71e-11 62.4
Msa1040550 AT1G18400.2 43.939 66 35 2 23 87 146 210 2.44e-11 61.2
Msa1040550 AT1G18400.1 43.939 66 35 2 23 87 146 210 2.68e-11 61.2
Msa1040550 AT1G63650.3 37.037 81 40 1 9 89 392 461 4.33e-11 61.6
Msa1040550 AT1G63650.1 37.037 81 40 1 9 89 392 461 4.33e-11 61.6
Msa1040550 AT1G63650.2 37.037 81 40 1 9 89 392 461 4.33e-11 61.6
Msa1040550 AT4G00120.1 49.180 61 27 1 29 85 114 174 4.86e-11 59.7
Msa1040550 AT1G68240.1 38.667 75 45 1 15 88 53 127 6.90e-11 58.9
Msa1040550 AT2G14760.3 32.927 82 48 1 32 113 259 333 8.40e-11 60.5
Msa1040550 AT1G68240.2 38.667 75 45 1 15 88 53 127 9.59e-11 58.5

Find 115 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAACATTTGATGGGTTTC+AGG 0.156734 7_1:-77930973 Msa1040550:CDS
TTTCTCTTTCCTCTAATTCT+AGG 0.178319 7_1:+77931961 None:intergenic
GACCCTCAAGCTTCAGTTAC+AGG 0.189644 7_1:-77931190 Msa1040550:intron
TCACATACCTTATTGCAATT+TGG 0.224679 7_1:+77931370 None:intergenic
TTGGATACCATGTTGAAAAT+TGG 0.242044 7_1:+77930139 None:intergenic
CTAGCTATCCTTTCCTTGAT+TGG 0.260539 7_1:-77930526 Msa1040550:three_prime_UTR
GAGCCTATGCATAATATTCT+TGG 0.269072 7_1:+77930722 None:intergenic
AGTTTGTGTACGTTGTTTCT+AGG 0.282978 7_1:+77932466 None:intergenic
ACACCAACACCGACCTCTTT+TGG 0.287108 7_1:-77930794 Msa1040550:CDS
TTGACATGTGTGGTGGTAAT+TGG 0.291651 7_1:+77930864 None:intergenic
TTCTGTGCAATTAGTGTGTT+TGG 0.314866 7_1:-77930601 Msa1040550:three_prime_UTR
CCTTTCATTCCTCCTATCAT+TGG 0.324461 7_1:-77930830 Msa1040550:CDS
CTTACATCATCACTTAAATA+TGG 0.331025 7_1:+77931823 None:intergenic
CATGTTGCTAATGAAGTAAA+TGG 0.334017 7_1:+77932416 None:intergenic
ATGTCCTTCCAGGTTGATTC+TGG 0.340577 7_1:+77930768 None:intergenic
GACTAGCCACATGTCCTTCC+AGG 0.347583 7_1:+77930758 None:intergenic
ACCAATGCACCTAGAATTAG+AGG 0.347789 7_1:-77931970 Msa1040550:five_prime_UTR
CCATCACCCATTTGTGGAAT+AGG 0.357478 7_1:+77930935 None:intergenic
AACATCATAAAATGATTAAC+TGG 0.360190 7_1:+77931034 None:intergenic
GTGAGTACCATTCTTGCTTT+GGG 0.363450 7_1:+77932323 None:intergenic
TTCATATGCAGAGTTTGATT+TGG 0.364667 7_1:+77932050 None:intergenic
TGTGAGTACCATTCTTGCTT+TGG 0.367609 7_1:+77932322 None:intergenic
AACGACAGAGTTCAGATGTT+TGG 0.380475 7_1:-77930896 Msa1040550:CDS
TATGAATGCACAACATTTGA+TGG 0.383363 7_1:-77930981 Msa1040550:CDS
ACAGTTTCCTATTCCACAAA+TGG 0.388703 7_1:-77930942 Msa1040550:CDS
TCCTCTAATTCTAGGTGCAT+TGG 0.390333 7_1:+77931969 None:intergenic
GCTCATACCAAATTGCAATA+AGG 0.391698 7_1:-77931377 Msa1040550:intron
AACATATAAGTGAGCGGAAA+AGG 0.400492 7_1:+77930323 None:intergenic
CTAGATTTCTTGAAATATGT+TGG 0.404625 7_1:+77930202 None:intergenic
GACGTTGCAGATTATGTCAA+TGG 0.409902 7_1:-77931074 Msa1040550:intron
AAAAGAGACATTTGATATGT+TGG 0.414165 7_1:-77930658 Msa1040550:three_prime_UTR
AGCCTATGCATAATATTCTT+GGG 0.415276 7_1:+77930723 None:intergenic
AAACAACGTACACAAACTTT+AGG 0.416300 7_1:-77932461 Msa1040550:five_prime_UTR
ACCAAAGTTTAGATCATTTG+AGG 0.426290 7_1:+77931879 None:intergenic
GTGAGTTTGTTGTTGCAGTT+TGG 0.430149 7_1:+77932253 None:intergenic
CAGTCCTCCCAAAGCAAGAA+TGG 0.434708 7_1:-77932330 Msa1040550:five_prime_UTR
AAAGAGACATTTGATATGTT+GGG 0.434907 7_1:-77930657 Msa1040550:three_prime_UTR
GTTTGGTTTGAATCCACTCT+TGG 0.436210 7_1:+77932270 None:intergenic
AATTCATAATTTATCTGAAA+GGG 0.436637 7_1:-77931550 Msa1040550:intron
GCCTCAAATGATCTAAACTT+TGG 0.436672 7_1:-77931880 Msa1040550:five_prime_UTR
ATTGAAACTGTGTCTGTGTC+TGG 0.439883 7_1:+77931723 None:intergenic
ACCAACTTTGATACTATTGT+GGG 0.442824 7_1:-77930430 Msa1040550:three_prime_UTR
ACTCTGTTTCCATTATGAGC+TGG 0.454011 7_1:+77931597 None:intergenic
CTCACAGAAACAGTACTTGA+TGG 0.454187 7_1:-77932235 Msa1040550:five_prime_UTR
TGTGTACGTTGTTTCTAGGT+TGG 0.455594 7_1:+77932470 None:intergenic
TGAATCATTAAAGAAAAGTC+GGG 0.457465 7_1:-77930560 Msa1040550:three_prime_UTR
AAAGAAAAGCCAGCTCATAA+TGG 0.458159 7_1:-77931606 Msa1040550:CDS
CACCAACTTTGATACTATTG+TGG 0.459310 7_1:-77930431 Msa1040550:three_prime_UTR
AGGAGGAATGAAAGGTGCAT+TGG 0.466560 7_1:+77930838 None:intergenic
GGAGGAATGAAAGGTGCATT+GGG 0.473309 7_1:+77930839 None:intergenic
TACAAACGTAAAATAGCATA+TGG 0.474481 7_1:+77931786 None:intergenic
GTGGAAGAGTTTCCAATGAT+AGG 0.480699 7_1:+77930818 None:intergenic
TTGATTCTGGTTACCAAAAG+AGG 0.480941 7_1:+77930781 None:intergenic
TACCTGTAACTGAAGCTTGA+GGG 0.481997 7_1:+77931188 None:intergenic
GTGACACCATCACCCATTTG+TGG 0.484725 7_1:+77930929 None:intergenic
TTGAATCATTAAAGAAAAGT+CGG 0.488312 7_1:-77930561 Msa1040550:three_prime_UTR
CAATCAAGGAAAGGATAGCT+AGG 0.490800 7_1:+77930527 None:intergenic
CAGTTTCCTATTCCACAAAT+GGG 0.491361 7_1:-77930941 Msa1040550:CDS
ATGCATAATATTCTTGGGCA+TGG 0.495441 7_1:+77930728 None:intergenic
AGTGTAAGTTTGAACATGAA+AGG 0.504506 7_1:-77930085 Msa1040550:three_prime_UTR
TAATTCTAGGTGCATTGGTA+TGG 0.508040 7_1:+77931974 None:intergenic
TGAAGAAACACAAGAAAATA+CGG 0.510993 7_1:-77931631 Msa1040550:CDS
ATCAAGCTTCGTAAGAATGA+TGG 0.511511 7_1:+77931675 None:intergenic
AATTTACCTACCAACAAAAG+AGG 0.512256 7_1:-77930232 Msa1040550:three_prime_UTR
GATACTATTGTGGGGTTGCG+AGG 0.513324 7_1:-77930421 Msa1040550:three_prime_UTR
TGGTGTTAGAAAATCATATG+AGG 0.518657 7_1:-77931860 Msa1040550:five_prime_UTR
GAATTGAGAAATACAGTAGC+TGG 0.519086 7_1:+77930621 None:intergenic
TATTTAAGTGATGATGTAAG+TGG 0.521909 7_1:-77931820 Msa1040550:five_prime_UTR
AAATTCATAATTTATCTGAA+AGG 0.531125 7_1:-77931551 Msa1040550:CDS
TCAAGTGAGCATACAGAAGA+TGG 0.531560 7_1:+77931904 None:intergenic
ACAGAGTCAAGAGAAGCTAC+AGG 0.536275 7_1:-77931581 Msa1040550:CDS
TCACAGAAACAGTACTTGAT+GGG 0.539019 7_1:-77932234 Msa1040550:five_prime_UTR
ATGAATGCACAACATTTGAT+GGG 0.539585 7_1:-77930980 Msa1040550:CDS
ACGTTGCAGATTATGTCAAT+GGG 0.542904 7_1:-77931073 Msa1040550:intron
GGAATAGGAAACTGTATTTG+TGG 0.547372 7_1:+77930950 None:intergenic
TGCATAATATTCTTGGGCAT+GGG 0.547979 7_1:+77930729 None:intergenic
CATGTGTGGTGGTAATTGGT+TGG 0.548002 7_1:+77930868 None:intergenic
TTACTATGAAGCACGAACAC+TGG 0.549159 7_1:-77931758 Msa1040550:five_prime_UTR
TTCATGTTCATATGATGTGC+GGG 0.552429 7_1:+77931010 None:intergenic
AGTACCATTCTTGCTTTGGG+AGG 0.558557 7_1:+77932326 None:intergenic
CCTATTCCACAAATGGGTGA+TGG 0.561913 7_1:-77930935 Msa1040550:CDS
TTGATGTTGTGAGCCAATCA+AGG 0.563413 7_1:+77930513 None:intergenic
TTGGACTTGTGTGTACGTAA+AGG 0.572746 7_1:+77932489 None:intergenic
CCCCACAATAGTATCAAAGT+TGG 0.573062 7_1:+77930429 None:intergenic
TCAGAATGTTCATCAACGGT+TGG 0.575923 7_1:+77932009 None:intergenic
AGCTTCAGAATGTTCATCAA+CGG 0.575933 7_1:+77932005 None:intergenic
TTTGGTAACCAGAATCAACC+TGG 0.577623 7_1:-77930776 Msa1040550:CDS
CTCATTCAAGACGTAAGACA+AGG 0.579237 7_1:+77930170 None:intergenic
AGAATACTCACTCGCACATG+TGG 0.586661 7_1:-77930360 Msa1040550:three_prime_UTR
TTACCTGTAACTGAAGCTTG+AGG 0.590352 7_1:+77931187 None:intergenic
AGAGGTCGGTGTTGGTGTGG+TGG 0.596953 7_1:+77930799 None:intergenic
ACTTAAATATGGAGAGTCAT+CGG 0.599086 7_1:+77931834 None:intergenic
ATACTATTGTGGGGTTGCGA+GGG 0.600676 7_1:-77930420 Msa1040550:three_prime_UTR
ATTCATGTTCATATGATGTG+CGG 0.605271 7_1:+77931009 None:intergenic
CCAATGATAGGAGGAATGAA+AGG 0.605339 7_1:+77930830 None:intergenic
GGACTGAAAATCAGTGTGAG+AGG 0.609414 7_1:+77932347 None:intergenic
AGGTGCATTGGTATGGCTAG+AGG 0.613493 7_1:+77931981 None:intergenic
AATCAAGGAAAGGATAGCTA+GGG 0.621018 7_1:+77930528 None:intergenic
GTTGTGAGCCAATCAAGGAA+AGG 0.623915 7_1:+77930518 None:intergenic
TTACCAAAAGAGGTCGGTGT+TGG 0.625914 7_1:+77930791 None:intergenic
GAAGAGTTTCCAATGATAGG+AGG 0.626184 7_1:+77930821 None:intergenic
TTCTGGTTACCAAAAGAGGT+CGG 0.642440 7_1:+77930785 None:intergenic
GTTGATTTGAGAAACACTGC+AGG 0.646249 7_1:+77932162 None:intergenic
TGATTGGCTCACAACATCAA+CGG 0.646597 7_1:-77930510 Msa1040550:three_prime_UTR
TGCCCAAGAATATTATGCAT+AGG 0.648045 7_1:-77930725 Msa1040550:three_prime_UTR
AGGGAAGCCTAAAAGAGTGA+AGG 0.651655 7_1:-77930401 Msa1040550:three_prime_UTR
CACAGAAACAGTACTTGATG+GGG 0.657574 7_1:-77932233 Msa1040550:five_prime_UTR
TGCAACAACATATAAGTGAG+CGG 0.659877 7_1:+77930317 None:intergenic
CCAACTTTGATACTATTGTG+GGG 0.663117 7_1:-77930429 Msa1040550:three_prime_UTR
AAAAGAGGTCGGTGTTGGTG+TGG 0.664019 7_1:+77930796 None:intergenic
GTAACCAGAATCAACCTGGA+AGG 0.666181 7_1:-77930772 Msa1040550:CDS
AATCAACCTGGAAGGACATG+TGG 0.668906 7_1:-77930764 Msa1040550:CDS
TCATTCAAGACGTAAGACAA+GGG 0.693376 7_1:+77930171 None:intergenic
TTGGGAATTGACATGTGTGG+TGG 0.729000 7_1:+77930857 None:intergenic
GCATTGGGAATTGACATGTG+TGG 0.733578 7_1:+77930854 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTCATAATTTATCTGAA+AGG - chr7_1:77931028-77931047 Msa1040550:CDS 15.0%
!! AATTCATAATTTATCTGAAA+GGG - chr7_1:77931029-77931048 Msa1040550:CDS 15.0%
!! TATTAAAAATCATTGTCATA+AGG + chr7_1:77932101-77932120 None:intergenic 15.0%
!! AAATTCATAATTTATCTGAA+AGG - chr7_1:77931028-77931047 Msa1040550:CDS 15.0%
!! AATTCATAATTTATCTGAAA+GGG - chr7_1:77931029-77931048 Msa1040550:CDS 15.0%
!! TATTAAAAATCATTGTCATA+AGG + chr7_1:77932101-77932120 None:intergenic 15.0%
!! ATTGTTGCATAGAAAATTTA+AGG + chr7_1:77931428-77931447 None:intergenic 20.0%
!! AACATCATAAAATGATTAAC+TGG + chr7_1:77931548-77931567 None:intergenic 20.0%
!! TTGAATCATTAAAGAAAAGT+CGG - chr7_1:77932018-77932037 Msa1040550:five_prime_UTR 20.0%
!!! TGACAATGATTTTTAATACA+AGG - chr7_1:77932103-77932122 Msa1040550:five_prime_UTR 20.0%
!! ATTGTTGCATAGAAAATTTA+AGG + chr7_1:77931428-77931447 None:intergenic 20.0%
!! AACATCATAAAATGATTAAC+TGG + chr7_1:77931548-77931567 None:intergenic 20.0%
!! TTGAATCATTAAAGAAAAGT+CGG - chr7_1:77932018-77932037 Msa1040550:five_prime_UTR 20.0%
!!! TGACAATGATTTTTAATACA+AGG - chr7_1:77932103-77932122 Msa1040550:five_prime_UTR 20.0%
! CTTACATCATCACTTAAATA+TGG + chr7_1:77930759-77930778 None:intergenic 25.0%
!! TATTTAAGTGATGATGTAAG+TGG - chr7_1:77930759-77930778 Msa1040550:exon 25.0%
! TACAAACGTAAAATAGCATA+TGG + chr7_1:77930796-77930815 None:intergenic 25.0%
! TGAAGAAACACAAGAAAATA+CGG - chr7_1:77930948-77930967 Msa1040550:CDS 25.0%
! AATAAAGTTCAACTTCAACA+AGG + chr7_1:77931270-77931289 None:intergenic 25.0%
!!! TGCTTTGTTTTTGTTATAGA+TGG - chr7_1:77931326-77931345 Msa1040550:intron 25.0%
! AAAAGAGACATTTGATATGT+TGG - chr7_1:77931921-77931940 Msa1040550:five_prime_UTR 25.0%
! AAAGAGACATTTGATATGTT+GGG - chr7_1:77931922-77931941 Msa1040550:five_prime_UTR 25.0%
! TCTTTAATGATTCAAAAAGC+TGG + chr7_1:77932013-77932032 None:intergenic 25.0%
! TGAATCATTAAAGAAAAGTC+GGG - chr7_1:77932019-77932038 Msa1040550:five_prime_UTR 25.0%
! CTAGATTTCTTGAAATATGT+TGG + chr7_1:77932380-77932399 None:intergenic 25.0%
! CTTACATCATCACTTAAATA+TGG + chr7_1:77930759-77930778 None:intergenic 25.0%
!! TATTTAAGTGATGATGTAAG+TGG - chr7_1:77930759-77930778 Msa1040550:exon 25.0%
! TACAAACGTAAAATAGCATA+TGG + chr7_1:77930796-77930815 None:intergenic 25.0%
! TGAAGAAACACAAGAAAATA+CGG - chr7_1:77930948-77930967 Msa1040550:CDS 25.0%
! AATAAAGTTCAACTTCAACA+AGG + chr7_1:77931270-77931289 None:intergenic 25.0%
!!! TGCTTTGTTTTTGTTATAGA+TGG - chr7_1:77931326-77931345 Msa1040550:intron 25.0%
! AAAAGAGACATTTGATATGT+TGG - chr7_1:77931921-77931940 Msa1040550:five_prime_UTR 25.0%
! AAAGAGACATTTGATATGTT+GGG - chr7_1:77931922-77931941 Msa1040550:five_prime_UTR 25.0%
! TCTTTAATGATTCAAAAAGC+TGG + chr7_1:77932013-77932032 None:intergenic 25.0%
! TGAATCATTAAAGAAAAGTC+GGG - chr7_1:77932019-77932038 Msa1040550:five_prime_UTR 25.0%
! CTAGATTTCTTGAAATATGT+TGG + chr7_1:77932380-77932399 None:intergenic 25.0%
AAACAACGTACACAAACTTT+AGG - chr7_1:77930118-77930137 Msa1040550:three_prime_UTR 30.0%
CATGTTGCTAATGAAGTAAA+TGG + chr7_1:77930166-77930185 None:intergenic 30.0%
TTCATATGCAGAGTTTGATT+TGG + chr7_1:77930532-77930551 None:intergenic 30.0%
TTTCTCTTTCCTCTAATTCT+AGG + chr7_1:77930621-77930640 None:intergenic 30.0%
ACCAAAGTTTAGATCATTTG+AGG + chr7_1:77930703-77930722 None:intergenic 30.0%
! TGGTGTTAGAAAATCATATG+AGG - chr7_1:77930719-77930738 Msa1040550:three_prime_UTR 30.0%
ACTTAAATATGGAGAGTCAT+CGG + chr7_1:77930748-77930767 None:intergenic 30.0%
ATAATTTATCTGAAAGGGTG+AGG - chr7_1:77931034-77931053 Msa1040550:CDS 30.0%
TCACATACCTTATTGCAATT+TGG + chr7_1:77931212-77931231 None:intergenic 30.0%
ATTCATGTTCATATGATGTG+CGG + chr7_1:77931573-77931592 None:intergenic 30.0%
TATGAATGCACAACATTTGA+TGG - chr7_1:77931598-77931617 Msa1040550:CDS 30.0%
ATGAATGCACAACATTTGAT+GGG - chr7_1:77931599-77931618 Msa1040550:CDS 30.0%
AGCCTATGCATAATATTCTT+GGG + chr7_1:77931859-77931878 None:intergenic 30.0%
! TCTTTTAGCATCATGTACTT+TGG + chr7_1:77931907-77931926 None:intergenic 30.0%
TTAATGATTCAAAAAGCTGG+TGG + chr7_1:77932010-77932029 None:intergenic 30.0%
ACCAACTTTGATACTATTGT+GGG - chr7_1:77932149-77932168 Msa1040550:five_prime_UTR 30.0%
AATTTACCTACCAACAAAAG+AGG - chr7_1:77932347-77932366 Msa1040550:five_prime_UTR 30.0%
! TTGCTTACCAATTTTCAACA+TGG - chr7_1:77932433-77932452 Msa1040550:five_prime_UTR 30.0%
TTGGATACCATGTTGAAAAT+TGG + chr7_1:77932443-77932462 None:intergenic 30.0%
AGTGTAAGTTTGAACATGAA+AGG - chr7_1:77932494-77932513 Msa1040550:five_prime_UTR 30.0%
AAACAACGTACACAAACTTT+AGG - chr7_1:77930118-77930137 Msa1040550:three_prime_UTR 30.0%
CATGTTGCTAATGAAGTAAA+TGG + chr7_1:77930166-77930185 None:intergenic 30.0%
TTCATATGCAGAGTTTGATT+TGG + chr7_1:77930532-77930551 None:intergenic 30.0%
TTTCTCTTTCCTCTAATTCT+AGG + chr7_1:77930621-77930640 None:intergenic 30.0%
ACCAAAGTTTAGATCATTTG+AGG + chr7_1:77930703-77930722 None:intergenic 30.0%
! TGGTGTTAGAAAATCATATG+AGG - chr7_1:77930719-77930738 Msa1040550:three_prime_UTR 30.0%
ACTTAAATATGGAGAGTCAT+CGG + chr7_1:77930748-77930767 None:intergenic 30.0%
ATAATTTATCTGAAAGGGTG+AGG - chr7_1:77931034-77931053 Msa1040550:CDS 30.0%
TCACATACCTTATTGCAATT+TGG + chr7_1:77931212-77931231 None:intergenic 30.0%
ATTCATGTTCATATGATGTG+CGG + chr7_1:77931573-77931592 None:intergenic 30.0%
TATGAATGCACAACATTTGA+TGG - chr7_1:77931598-77931617 Msa1040550:CDS 30.0%
ATGAATGCACAACATTTGAT+GGG - chr7_1:77931599-77931618 Msa1040550:CDS 30.0%
AGCCTATGCATAATATTCTT+GGG + chr7_1:77931859-77931878 None:intergenic 30.0%
! TCTTTTAGCATCATGTACTT+TGG + chr7_1:77931907-77931926 None:intergenic 30.0%
TTAATGATTCAAAAAGCTGG+TGG + chr7_1:77932010-77932029 None:intergenic 30.0%
ACCAACTTTGATACTATTGT+GGG - chr7_1:77932149-77932168 Msa1040550:five_prime_UTR 30.0%
AATTTACCTACCAACAAAAG+AGG - chr7_1:77932347-77932366 Msa1040550:five_prime_UTR 30.0%
! TTGCTTACCAATTTTCAACA+TGG - chr7_1:77932433-77932452 Msa1040550:five_prime_UTR 30.0%
TTGGATACCATGTTGAAAAT+TGG + chr7_1:77932443-77932462 None:intergenic 30.0%
AGTGTAAGTTTGAACATGAA+AGG - chr7_1:77932494-77932513 Msa1040550:five_prime_UTR 30.0%
!! AGTTTGTGTACGTTGTTTCT+AGG + chr7_1:77930116-77930135 None:intergenic 35.0%
TCAGAGATGACAAAAAGCAA+TGG - chr7_1:77930201-77930220 Msa1040550:three_prime_UTR 35.0%
ATGACAAAAAGCAATGGCTT+AGG - chr7_1:77930207-77930226 Msa1040550:three_prime_UTR 35.0%
! TCCTCTAAAAAAACCAAGAG+TGG - chr7_1:77930296-77930315 Msa1040550:three_prime_UTR 35.0%
!!! TCCACTCTTGGTTTTTTTAG+AGG + chr7_1:77930300-77930319 None:intergenic 35.0%
TCACAGAAACAGTACTTGAT+GGG - chr7_1:77930345-77930364 Msa1040550:three_prime_UTR 35.0%
GGGTGCGAATATCAAAAAAA+TGG - chr7_1:77930366-77930385 Msa1040550:three_prime_UTR 35.0%
AGCTTCAGAATGTTCATCAA+CGG + chr7_1:77930577-77930596 None:intergenic 35.0%
! TAATTCTAGGTGCATTGGTA+TGG + chr7_1:77930608-77930627 None:intergenic 35.0%
GCCTCAAATGATCTAAACTT+TGG - chr7_1:77930699-77930718 Msa1040550:three_prime_UTR 35.0%
ATCAAGCTTCGTAAGAATGA+TGG + chr7_1:77930907-77930926 None:intergenic 35.0%
AAAGAAAAGCCAGCTCATAA+TGG - chr7_1:77930973-77930992 Msa1040550:CDS 35.0%
GCTCATACCAAATTGCAATA+AGG - chr7_1:77931202-77931221 Msa1040550:CDS 35.0%
ACGTTGCAGATTATGTCAAT+GGG - chr7_1:77931506-77931525 Msa1040550:intron 35.0%
TTCATGTTCATATGATGTGC+GGG + chr7_1:77931572-77931591 None:intergenic 35.0%
GGAATAGGAAACTGTATTTG+TGG + chr7_1:77931632-77931651 None:intergenic 35.0%
ACAGTTTCCTATTCCACAAA+TGG - chr7_1:77931637-77931656 Msa1040550:CDS 35.0%
CAGTTTCCTATTCCACAAAT+GGG - chr7_1:77931638-77931657 Msa1040550:CDS 35.0%
! TTGATTCTGGTTACCAAAAG+AGG + chr7_1:77931801-77931820 None:intergenic 35.0%
TGCATAATATTCTTGGGCAT+GGG + chr7_1:77931853-77931872 None:intergenic 35.0%
ATGCATAATATTCTTGGGCA+TGG + chr7_1:77931854-77931873 None:intergenic 35.0%
TGCCCAAGAATATTATGCAT+AGG - chr7_1:77931854-77931873 Msa1040550:five_prime_UTR 35.0%
GAGCCTATGCATAATATTCT+TGG + chr7_1:77931860-77931879 None:intergenic 35.0%
GAATTGAGAAATACAGTAGC+TGG + chr7_1:77931961-77931980 None:intergenic 35.0%
TTCTGTGCAATTAGTGTGTT+TGG - chr7_1:77931978-77931997 Msa1040550:five_prime_UTR 35.0%
AATCAAGGAAAGGATAGCTA+GGG + chr7_1:77932054-77932073 None:intergenic 35.0%
CACCAACTTTGATACTATTG+TGG - chr7_1:77932148-77932167 Msa1040550:five_prime_UTR 35.0%
CCAACTTTGATACTATTGTG+GGG - chr7_1:77932150-77932169 Msa1040550:five_prime_UTR 35.0%
! TGATGATCCTTCACTCTTTT+AGG + chr7_1:77932188-77932207 None:intergenic 35.0%
AACATATAAGTGAGCGGAAA+AGG + chr7_1:77932259-77932278 None:intergenic 35.0%
TGCAACAACATATAAGTGAG+CGG + chr7_1:77932265-77932284 None:intergenic 35.0%
! GATTTTCCTCTTTTGTTGGT+AGG + chr7_1:77932356-77932375 None:intergenic 35.0%
! TGGAGATTTTCCTCTTTTGT+TGG + chr7_1:77932360-77932379 None:intergenic 35.0%
TCATTCAAGACGTAAGACAA+GGG + chr7_1:77932411-77932430 None:intergenic 35.0%
! GTTTTGTACGTCATTAGACT+TGG + chr7_1:77932462-77932481 None:intergenic 35.0%
!! AGTTTGTGTACGTTGTTTCT+AGG + chr7_1:77930116-77930135 None:intergenic 35.0%
TCAGAGATGACAAAAAGCAA+TGG - chr7_1:77930201-77930220 Msa1040550:three_prime_UTR 35.0%
ATGACAAAAAGCAATGGCTT+AGG - chr7_1:77930207-77930226 Msa1040550:three_prime_UTR 35.0%
! TCCTCTAAAAAAACCAAGAG+TGG - chr7_1:77930296-77930315 Msa1040550:three_prime_UTR 35.0%
!!! TCCACTCTTGGTTTTTTTAG+AGG + chr7_1:77930300-77930319 None:intergenic 35.0%
TCACAGAAACAGTACTTGAT+GGG - chr7_1:77930345-77930364 Msa1040550:three_prime_UTR 35.0%
GGGTGCGAATATCAAAAAAA+TGG - chr7_1:77930366-77930385 Msa1040550:three_prime_UTR 35.0%
AGCTTCAGAATGTTCATCAA+CGG + chr7_1:77930577-77930596 None:intergenic 35.0%
! TAATTCTAGGTGCATTGGTA+TGG + chr7_1:77930608-77930627 None:intergenic 35.0%
GCCTCAAATGATCTAAACTT+TGG - chr7_1:77930699-77930718 Msa1040550:three_prime_UTR 35.0%
ATCAAGCTTCGTAAGAATGA+TGG + chr7_1:77930907-77930926 None:intergenic 35.0%
AAAGAAAAGCCAGCTCATAA+TGG - chr7_1:77930973-77930992 Msa1040550:CDS 35.0%
GCTCATACCAAATTGCAATA+AGG - chr7_1:77931202-77931221 Msa1040550:CDS 35.0%
ACGTTGCAGATTATGTCAAT+GGG - chr7_1:77931506-77931525 Msa1040550:intron 35.0%
TTCATGTTCATATGATGTGC+GGG + chr7_1:77931572-77931591 None:intergenic 35.0%
GGAATAGGAAACTGTATTTG+TGG + chr7_1:77931632-77931651 None:intergenic 35.0%
ACAGTTTCCTATTCCACAAA+TGG - chr7_1:77931637-77931656 Msa1040550:CDS 35.0%
CAGTTTCCTATTCCACAAAT+GGG - chr7_1:77931638-77931657 Msa1040550:CDS 35.0%
! TTGATTCTGGTTACCAAAAG+AGG + chr7_1:77931801-77931820 None:intergenic 35.0%
TGCATAATATTCTTGGGCAT+GGG + chr7_1:77931853-77931872 None:intergenic 35.0%
ATGCATAATATTCTTGGGCA+TGG + chr7_1:77931854-77931873 None:intergenic 35.0%
TGCCCAAGAATATTATGCAT+AGG - chr7_1:77931854-77931873 Msa1040550:five_prime_UTR 35.0%
GAGCCTATGCATAATATTCT+TGG + chr7_1:77931860-77931879 None:intergenic 35.0%
GAATTGAGAAATACAGTAGC+TGG + chr7_1:77931961-77931980 None:intergenic 35.0%
TTCTGTGCAATTAGTGTGTT+TGG - chr7_1:77931978-77931997 Msa1040550:five_prime_UTR 35.0%
AATCAAGGAAAGGATAGCTA+GGG + chr7_1:77932054-77932073 None:intergenic 35.0%
CACCAACTTTGATACTATTG+TGG - chr7_1:77932148-77932167 Msa1040550:five_prime_UTR 35.0%
CCAACTTTGATACTATTGTG+GGG - chr7_1:77932150-77932169 Msa1040550:five_prime_UTR 35.0%
! TGATGATCCTTCACTCTTTT+AGG + chr7_1:77932188-77932207 None:intergenic 35.0%
AACATATAAGTGAGCGGAAA+AGG + chr7_1:77932259-77932278 None:intergenic 35.0%
TGCAACAACATATAAGTGAG+CGG + chr7_1:77932265-77932284 None:intergenic 35.0%
! GATTTTCCTCTTTTGTTGGT+AGG + chr7_1:77932356-77932375 None:intergenic 35.0%
! TGGAGATTTTCCTCTTTTGT+TGG + chr7_1:77932360-77932379 None:intergenic 35.0%
TCATTCAAGACGTAAGACAA+GGG + chr7_1:77932411-77932430 None:intergenic 35.0%
! GTTTTGTACGTCATTAGACT+TGG + chr7_1:77932462-77932481 None:intergenic 35.0%
TTGGACTTGTGTGTACGTAA+AGG + chr7_1:77930093-77930112 None:intergenic 40.0%
!! TGTGTACGTTGTTTCTAGGT+TGG + chr7_1:77930112-77930131 None:intergenic 40.0%
GTGAGTACCATTCTTGCTTT+GGG + chr7_1:77930259-77930278 None:intergenic 40.0%
TGTGAGTACCATTCTTGCTT+TGG + chr7_1:77930260-77930279 None:intergenic 40.0%
!! GTTTGGTTTGAATCCACTCT+TGG + chr7_1:77930312-77930331 None:intergenic 40.0%
!! GTGAGTTTGTTGTTGCAGTT+TGG + chr7_1:77930329-77930348 None:intergenic 40.0%
CTCACAGAAACAGTACTTGA+TGG - chr7_1:77930344-77930363 Msa1040550:three_prime_UTR 40.0%
CACAGAAACAGTACTTGATG+GGG - chr7_1:77930346-77930365 Msa1040550:three_prime_UTR 40.0%
!! GTTGATTTGAGAAACACTGC+AGG + chr7_1:77930420-77930439 None:intergenic 40.0%
TCAGAATGTTCATCAACGGT+TGG + chr7_1:77930573-77930592 None:intergenic 40.0%
ACCAATGCACCTAGAATTAG+AGG - chr7_1:77930609-77930628 Msa1040550:three_prime_UTR 40.0%
TCCTCTAATTCTAGGTGCAT+TGG + chr7_1:77930613-77930632 None:intergenic 40.0%
TCAAGTGAGCATACAGAAGA+TGG + chr7_1:77930678-77930697 None:intergenic 40.0%
TTACTATGAAGCACGAACAC+TGG - chr7_1:77930821-77930840 Msa1040550:CDS 40.0%
ATTGAAACTGTGTCTGTGTC+TGG + chr7_1:77930859-77930878 None:intergenic 40.0%
ACTCTGTTTCCATTATGAGC+TGG + chr7_1:77930985-77931004 None:intergenic 40.0%
TACCTGTAACTGAAGCTTGA+GGG + chr7_1:77931394-77931413 None:intergenic 40.0%
TTACCTGTAACTGAAGCTTG+AGG + chr7_1:77931395-77931414 None:intergenic 40.0%
GACGTTGCAGATTATGTCAA+TGG - chr7_1:77931505-77931524 Msa1040550:intron 40.0%
!! CACAACATTTGATGGGTTTC+AGG - chr7_1:77931606-77931625 Msa1040550:CDS 40.0%
AACGACAGAGTTCAGATGTT+TGG - chr7_1:77931683-77931702 Msa1040550:five_prime_UTR 40.0%
TTGACATGTGTGGTGGTAAT+TGG + chr7_1:77931718-77931737 None:intergenic 40.0%
CCAATGATAGGAGGAATGAA+AGG + chr7_1:77931752-77931771 None:intergenic 40.0%
CCTTTCATTCCTCCTATCAT+TGG - chr7_1:77931749-77931768 Msa1040550:five_prime_UTR 40.0%
GAAGAGTTTCCAATGATAGG+AGG + chr7_1:77931761-77931780 None:intergenic 40.0%
GTGGAAGAGTTTCCAATGAT+AGG + chr7_1:77931764-77931783 None:intergenic 40.0%
! TTCTGGTTACCAAAAGAGGT+CGG + chr7_1:77931797-77931816 None:intergenic 40.0%
! TTTGGTAACCAGAATCAACC+TGG - chr7_1:77931803-77931822 Msa1040550:five_prime_UTR 40.0%
CAATCAAGGAAAGGATAGCT+AGG + chr7_1:77932055-77932074 None:intergenic 40.0%
CTAGCTATCCTTTCCTTGAT+TGG - chr7_1:77932053-77932072 Msa1040550:five_prime_UTR 40.0%
TTGATGTTGTGAGCCAATCA+AGG + chr7_1:77932069-77932088 None:intergenic 40.0%
! TGATTGGCTCACAACATCAA+CGG - chr7_1:77932069-77932088 Msa1040550:five_prime_UTR 40.0%
CCCCACAATAGTATCAAAGT+TGG + chr7_1:77932153-77932172 None:intergenic 40.0%
CTCATTCAAGACGTAAGACA+AGG + chr7_1:77932412-77932431 None:intergenic 40.0%
TTGGACTTGTGTGTACGTAA+AGG + chr7_1:77930093-77930112 None:intergenic 40.0%
!! TGTGTACGTTGTTTCTAGGT+TGG + chr7_1:77930112-77930131 None:intergenic 40.0%
GTGAGTACCATTCTTGCTTT+GGG + chr7_1:77930259-77930278 None:intergenic 40.0%
TGTGAGTACCATTCTTGCTT+TGG + chr7_1:77930260-77930279 None:intergenic 40.0%
!! GTTTGGTTTGAATCCACTCT+TGG + chr7_1:77930312-77930331 None:intergenic 40.0%
!! GTGAGTTTGTTGTTGCAGTT+TGG + chr7_1:77930329-77930348 None:intergenic 40.0%
CTCACAGAAACAGTACTTGA+TGG - chr7_1:77930344-77930363 Msa1040550:three_prime_UTR 40.0%
CACAGAAACAGTACTTGATG+GGG - chr7_1:77930346-77930365 Msa1040550:three_prime_UTR 40.0%
!! GTTGATTTGAGAAACACTGC+AGG + chr7_1:77930420-77930439 None:intergenic 40.0%
TCAGAATGTTCATCAACGGT+TGG + chr7_1:77930573-77930592 None:intergenic 40.0%
ACCAATGCACCTAGAATTAG+AGG - chr7_1:77930609-77930628 Msa1040550:three_prime_UTR 40.0%
TCCTCTAATTCTAGGTGCAT+TGG + chr7_1:77930613-77930632 None:intergenic 40.0%
TCAAGTGAGCATACAGAAGA+TGG + chr7_1:77930678-77930697 None:intergenic 40.0%
TTACTATGAAGCACGAACAC+TGG - chr7_1:77930821-77930840 Msa1040550:CDS 40.0%
ATTGAAACTGTGTCTGTGTC+TGG + chr7_1:77930859-77930878 None:intergenic 40.0%
ACTCTGTTTCCATTATGAGC+TGG + chr7_1:77930985-77931004 None:intergenic 40.0%
TACCTGTAACTGAAGCTTGA+GGG + chr7_1:77931394-77931413 None:intergenic 40.0%
TTACCTGTAACTGAAGCTTG+AGG + chr7_1:77931395-77931414 None:intergenic 40.0%
GACGTTGCAGATTATGTCAA+TGG - chr7_1:77931505-77931524 Msa1040550:intron 40.0%
!! CACAACATTTGATGGGTTTC+AGG - chr7_1:77931606-77931625 Msa1040550:CDS 40.0%
AACGACAGAGTTCAGATGTT+TGG - chr7_1:77931683-77931702 Msa1040550:five_prime_UTR 40.0%
TTGACATGTGTGGTGGTAAT+TGG + chr7_1:77931718-77931737 None:intergenic 40.0%
CCAATGATAGGAGGAATGAA+AGG + chr7_1:77931752-77931771 None:intergenic 40.0%
CCTTTCATTCCTCCTATCAT+TGG - chr7_1:77931749-77931768 Msa1040550:five_prime_UTR 40.0%
GAAGAGTTTCCAATGATAGG+AGG + chr7_1:77931761-77931780 None:intergenic 40.0%
GTGGAAGAGTTTCCAATGAT+AGG + chr7_1:77931764-77931783 None:intergenic 40.0%
! TTCTGGTTACCAAAAGAGGT+CGG + chr7_1:77931797-77931816 None:intergenic 40.0%
! TTTGGTAACCAGAATCAACC+TGG - chr7_1:77931803-77931822 Msa1040550:five_prime_UTR 40.0%
CAATCAAGGAAAGGATAGCT+AGG + chr7_1:77932055-77932074 None:intergenic 40.0%
CTAGCTATCCTTTCCTTGAT+TGG - chr7_1:77932053-77932072 Msa1040550:five_prime_UTR 40.0%
TTGATGTTGTGAGCCAATCA+AGG + chr7_1:77932069-77932088 None:intergenic 40.0%
! TGATTGGCTCACAACATCAA+CGG - chr7_1:77932069-77932088 Msa1040550:five_prime_UTR 40.0%
CCCCACAATAGTATCAAAGT+TGG + chr7_1:77932153-77932172 None:intergenic 40.0%
CTCATTCAAGACGTAAGACA+AGG + chr7_1:77932412-77932431 None:intergenic 40.0%
GGACTGAAAATCAGTGTGAG+AGG + chr7_1:77930235-77930254 None:intergenic 45.0%
! AGTACCATTCTTGCTTTGGG+AGG + chr7_1:77930256-77930275 None:intergenic 45.0%
ACAGAGTCAAGAGAAGCTAC+AGG - chr7_1:77930998-77931017 Msa1040550:CDS 45.0%
CCATCACCCATTTGTGGAAT+AGG + chr7_1:77931647-77931666 None:intergenic 45.0%
CCTATTCCACAAATGGGTGA+TGG - chr7_1:77931644-77931663 Msa1040550:CDS 45.0%
CATGTGTGGTGGTAATTGGT+TGG + chr7_1:77931714-77931733 None:intergenic 45.0%
TTGGGAATTGACATGTGTGG+TGG + chr7_1:77931725-77931744 None:intergenic 45.0%
GCATTGGGAATTGACATGTG+TGG + chr7_1:77931728-77931747 None:intergenic 45.0%
! GGAGGAATGAAAGGTGCATT+GGG + chr7_1:77931743-77931762 None:intergenic 45.0%
! AGGAGGAATGAAAGGTGCAT+TGG + chr7_1:77931744-77931763 None:intergenic 45.0%
TTACCAAAAGAGGTCGGTGT+TGG + chr7_1:77931791-77931810 None:intergenic 45.0%
GTAACCAGAATCAACCTGGA+AGG - chr7_1:77931807-77931826 Msa1040550:five_prime_UTR 45.0%
!! ATGTCCTTCCAGGTTGATTC+TGG + chr7_1:77931814-77931833 None:intergenic 45.0%
AATCAACCTGGAAGGACATG+TGG - chr7_1:77931815-77931834 Msa1040550:five_prime_UTR 45.0%
GTTGTGAGCCAATCAAGGAA+AGG + chr7_1:77932064-77932083 None:intergenic 45.0%
ATACTATTGTGGGGTTGCGA+GGG - chr7_1:77932159-77932178 Msa1040550:five_prime_UTR 45.0%
AGGGAAGCCTAAAAGAGTGA+AGG - chr7_1:77932178-77932197 Msa1040550:five_prime_UTR 45.0%
AGAATACTCACTCGCACATG+TGG - chr7_1:77932219-77932238 Msa1040550:five_prime_UTR 45.0%
GGACTGAAAATCAGTGTGAG+AGG + chr7_1:77930235-77930254 None:intergenic 45.0%
! AGTACCATTCTTGCTTTGGG+AGG + chr7_1:77930256-77930275 None:intergenic 45.0%
ACAGAGTCAAGAGAAGCTAC+AGG - chr7_1:77930998-77931017 Msa1040550:CDS 45.0%
CCATCACCCATTTGTGGAAT+AGG + chr7_1:77931647-77931666 None:intergenic 45.0%
CCTATTCCACAAATGGGTGA+TGG - chr7_1:77931644-77931663 Msa1040550:CDS 45.0%
CATGTGTGGTGGTAATTGGT+TGG + chr7_1:77931714-77931733 None:intergenic 45.0%
TTGGGAATTGACATGTGTGG+TGG + chr7_1:77931725-77931744 None:intergenic 45.0%
GCATTGGGAATTGACATGTG+TGG + chr7_1:77931728-77931747 None:intergenic 45.0%
! GGAGGAATGAAAGGTGCATT+GGG + chr7_1:77931743-77931762 None:intergenic 45.0%
! AGGAGGAATGAAAGGTGCAT+TGG + chr7_1:77931744-77931763 None:intergenic 45.0%
TTACCAAAAGAGGTCGGTGT+TGG + chr7_1:77931791-77931810 None:intergenic 45.0%
GTAACCAGAATCAACCTGGA+AGG - chr7_1:77931807-77931826 Msa1040550:five_prime_UTR 45.0%
!! ATGTCCTTCCAGGTTGATTC+TGG + chr7_1:77931814-77931833 None:intergenic 45.0%
AATCAACCTGGAAGGACATG+TGG - chr7_1:77931815-77931834 Msa1040550:five_prime_UTR 45.0%
GTTGTGAGCCAATCAAGGAA+AGG + chr7_1:77932064-77932083 None:intergenic 45.0%
ATACTATTGTGGGGTTGCGA+GGG - chr7_1:77932159-77932178 Msa1040550:five_prime_UTR 45.0%
AGGGAAGCCTAAAAGAGTGA+AGG - chr7_1:77932178-77932197 Msa1040550:five_prime_UTR 45.0%
AGAATACTCACTCGCACATG+TGG - chr7_1:77932219-77932238 Msa1040550:five_prime_UTR 45.0%
CAGTCCTCCCAAAGCAAGAA+TGG - chr7_1:77930249-77930268 Msa1040550:three_prime_UTR 50.0%
! AGGTGCATTGGTATGGCTAG+AGG + chr7_1:77930601-77930620 None:intergenic 50.0%
GACCCTCAAGCTTCAGTTAC+AGG - chr7_1:77931389-77931408 Msa1040550:CDS 50.0%
GTGACACCATCACCCATTTG+TGG + chr7_1:77931653-77931672 None:intergenic 50.0%
!! AAAAGAGGTCGGTGTTGGTG+TGG + chr7_1:77931786-77931805 None:intergenic 50.0%
! ACACCAACACCGACCTCTTT+TGG - chr7_1:77931785-77931804 Msa1040550:five_prime_UTR 50.0%
GATACTATTGTGGGGTTGCG+AGG - chr7_1:77932158-77932177 Msa1040550:five_prime_UTR 50.0%
CAGTCCTCCCAAAGCAAGAA+TGG - chr7_1:77930249-77930268 Msa1040550:three_prime_UTR 50.0%
! AGGTGCATTGGTATGGCTAG+AGG + chr7_1:77930601-77930620 None:intergenic 50.0%
GACCCTCAAGCTTCAGTTAC+AGG - chr7_1:77931389-77931408 Msa1040550:CDS 50.0%
GTGACACCATCACCCATTTG+TGG + chr7_1:77931653-77931672 None:intergenic 50.0%
!! AAAAGAGGTCGGTGTTGGTG+TGG + chr7_1:77931786-77931805 None:intergenic 50.0%
! ACACCAACACCGACCTCTTT+TGG - chr7_1:77931785-77931804 Msa1040550:five_prime_UTR 50.0%
GATACTATTGTGGGGTTGCG+AGG - chr7_1:77932158-77932177 Msa1040550:five_prime_UTR 50.0%
! GACTAGCCACATGTCCTTCC+AGG + chr7_1:77931824-77931843 None:intergenic 55.0%
! GACTAGCCACATGTCCTTCC+AGG + chr7_1:77931824-77931843 None:intergenic 55.0%
!! AGAGGTCGGTGTTGGTGTGG+TGG + chr7_1:77931783-77931802 None:intergenic 60.0%
!! AGAGGTCGGTGTTGGTGTGG+TGG + chr7_1:77931783-77931802 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 77930075 77932526 77930075 ID=Msa1040550;Name=Msa1040550
chr7_1 mRNA 77930075 77932526 77930075 ID=Msa1040550-mRNA-1;Parent=Msa1040550;Name=Msa1040550-mRNA-1;_AED=0.01;_eAED=0.01;_QI=859|1|1|1|1|1|4|685|191
chr7_1 exon 77930075 77931086 77930075 ID=Msa1040550-mRNA-1:exon:20692;Parent=Msa1040550-mRNA-1
chr7_1 exon 77931191 77931256 77931191 ID=Msa1040550-mRNA-1:exon:20691;Parent=Msa1040550-mRNA-1
chr7_1 exon 77931378 77931443 77931378 ID=Msa1040550-mRNA-1:exon:20690;Parent=Msa1040550-mRNA-1
chr7_1 exon 77931551 77932526 77931551 ID=Msa1040550-mRNA-1:exon:20689;Parent=Msa1040550-mRNA-1
chr7_1 five_prime_UTR 77931668 77932526 77931668 ID=Msa1040550-mRNA-1:five_prime_utr;Parent=Msa1040550-mRNA-1
chr7_1 CDS 77931551 77931667 77931551 ID=Msa1040550-mRNA-1:cds;Parent=Msa1040550-mRNA-1
chr7_1 CDS 77931378 77931443 77931378 ID=Msa1040550-mRNA-1:cds;Parent=Msa1040550-mRNA-1
chr7_1 CDS 77931191 77931256 77931191 ID=Msa1040550-mRNA-1:cds;Parent=Msa1040550-mRNA-1
chr7_1 CDS 77930760 77931086 77930760 ID=Msa1040550-mRNA-1:cds;Parent=Msa1040550-mRNA-1
chr7_1 three_prime_UTR 77930075 77930759 77930075 ID=Msa1040550-mRNA-1:three_prime_utr;Parent=Msa1040550-mRNA-1
Gene Sequence

>Msa1040550

ATGTTGCAGAATGATGAAGAAACACAAGAAAATACGGTGAAAGAAAAGCCAGCTCATAATGGAAACAGAGTCAAGAGAAGCTACAGGAATACAAAAATTCATAATTTATCTGAAAGGAAGAGAAGAGATAAAATTAATGAGAAAATACGTGCATTGAAAGAGCTCATACCAAATTGCAATAAGATGGACAAAGCTTCAATGCTTGACGATGCAATCGATTATCTTAAGACCCTCAAGCTTCAGTTACAGATTATGTCAATGGGAAGAGCACTTTGTATGCCAGTTAATCATTTTATGATGTTACCCGCACATCATATGAACATGAATATGAATATGAATGCACAACATTTGATGGGTTTCAGGCCACAAATACAGTTTCCTATTCCACAAATGGGTGATGGTGTCACAAACAATAACAACGACAGAGTTCAGATGTTTGGTTTCTCCAACCAATTACCACCACACATGTCAATTCCCAATGCACCTTTCATTCCTCCTATCATTGGAAACTCTTCCACCACACCAACACCGACCTCTTTTGGTAACCAGAATCAACCTGGAAGGACATGTGGCTAG
Protein sequence

>Msa1040550

MLQNDEETQENTVKEKPAHNGNRVKRSYRNTKIHNLSERKRRDKINEKIRALKELIPNCNKMDKASMLDDAIDYLKTLKLQLQIMSMGRALCMPVNHFMMLPAHHMNMNMNMNAQHLMGFRPQIQFPIPQMGDGVTNNNNDRVQMFGFSNQLPPHMSIPNAPFIPPIIGNSSTTPTPTSFGNQNQPGRTCG*