AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1083000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1083000 MtrunA17_Chr7g0270871 92.147 191 12 2 10 197 183 373 1.40e-115 333
Msa1083000 MtrunA17_Chr1g0193321 56.034 116 44 2 11 126 444 552 3.25e-32 122
Msa1083000 MtrunA17_Chr1g0182791 65.333 75 26 0 20 94 308 382 8.23e-28 109
Msa1083000 MtrunA17_Chr3g0095391 45.455 121 57 4 1 118 282 396 1.12e-24 100
Msa1083000 MtrunA17_Chr7g0271251 49.254 134 52 5 12 137 413 538 1.14e-24 100
Msa1083000 MtrunA17_Chr7g0262691 64.000 75 20 2 26 94 250 323 2.30e-23 96.3
Msa1083000 MtrunA17_Chr1g0153241 36.082 194 84 7 9 186 67 236 4.73e-22 90.5
Msa1083000 MtrunA17_Chr5g0402031 56.716 67 29 0 38 104 114 180 7.09e-20 85.5
Msa1083000 MtrunA17_Chr7g0231461 51.250 80 35 2 15 91 281 359 7.92e-17 77.8
Msa1083000 MtrunA17_Chr4g0074161 55.357 56 25 0 40 95 217 272 1.21e-16 77.0
Msa1083000 MtrunA17_Chr1g0190731 51.786 56 27 0 40 95 204 259 6.67e-16 74.7
Msa1083000 MtrunA17_Chr1g0152131 46.970 66 34 1 40 104 271 336 4.51e-13 67.0
Msa1083000 MtrunA17_Chr3g0134741 46.377 69 35 1 26 92 224 292 9.57e-13 65.5
Msa1083000 MtrunA17_Chr4g0054581 45.588 68 37 0 24 91 183 250 1.69e-12 65.1
Msa1083000 MtrunA17_Chr4g0002781 44.872 78 43 0 12 89 147 224 5.12e-12 63.5
Msa1083000 MtrunA17_Chr8g0346151 44.643 56 31 0 40 95 280 335 7.50e-12 63.2
Msa1083000 MtrunA17_Chr5g0421111 45.161 62 33 1 40 100 376 437 8.93e-12 63.2
Msa1083000 MtrunA17_Chr4g0035101 40.000 80 46 2 22 100 137 215 9.18e-12 62.8
Msa1083000 MtrunA17_Chr3g0144641 37.037 108 57 4 40 136 202 309 9.98e-12 62.8
Msa1083000 MtrunA17_Chr8g0365941 44.118 68 37 1 40 106 316 383 1.30e-11 62.8
Msa1083000 MtrunA17_Chr3g0134001 49.180 61 27 1 35 91 173 233 1.55e-11 61.6
Msa1083000 MtrunA17_Chr8g0363921 45.455 55 29 1 40 93 162 216 1.78e-11 61.6
Msa1083000 MtrunA17_Chr1g0207301 34.667 75 42 1 45 119 304 371 2.39e-11 61.6
Msa1083000 MtrunA17_Chr5g0400661 44.444 63 35 0 29 91 139 201 2.46e-11 61.6
Msa1083000 MtrunA17_Chr8g0384141 47.541 61 28 1 35 91 116 176 2.49e-11 61.2
Msa1083000 MtrunA17_Chr7g0275821 48.214 56 29 0 40 95 253 308 3.08e-11 61.6
Msa1083000 MtrunA17_Chr8g0366751 38.636 88 51 1 5 89 425 512 3.64e-11 61.6
Msa1083000 MtrunA17_Chr8g0339091 47.273 55 28 1 40 93 302 356 3.78e-11 61.2
Msa1083000 MtrunA17_Chr7g0234761 46.552 58 30 1 40 96 328 385 3.83e-11 61.2
Msa1083000 MtrunA17_Chr5g0415291 45.455 55 29 1 40 93 123 177 4.29e-11 60.1
Msa1083000 MtrunA17_Chr5g0400621 41.026 78 46 0 15 92 133 210 7.33e-11 60.1
Msa1083000 MtrunA17_Chr5g0411341 41.429 70 41 0 20 89 474 543 8.61e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1083000 AT1G09530.3 59.184 98 38 2 4 100 312 408 1.37e-29 114
Msa1083000 AT1G09530.2 59.184 98 38 2 4 100 312 408 1.37e-29 114
Msa1083000 AT1G09530.5 59.184 98 38 2 4 100 312 408 1.37e-29 114
Msa1083000 AT1G09530.1 59.184 98 38 2 4 100 312 408 1.37e-29 114
Msa1083000 AT1G09530.4 59.184 98 38 2 4 100 312 408 1.37e-29 114
Msa1083000 AT1G09530.6 59.184 98 38 2 4 100 312 408 1.37e-29 114
Msa1083000 AT2G20180.7 41.875 160 88 2 12 171 190 344 1.26e-28 110
Msa1083000 AT2G20180.1 41.875 160 88 2 12 171 190 344 1.26e-28 110
Msa1083000 AT2G20180.5 41.875 160 88 2 12 171 190 344 1.26e-28 110
Msa1083000 AT2G20180.4 41.875 160 88 2 12 171 261 415 4.01e-28 110
Msa1083000 AT2G20180.6 41.875 160 88 2 12 171 261 415 4.01e-28 110
Msa1083000 AT2G20180.2 41.875 160 88 2 12 171 261 415 4.01e-28 110
Msa1083000 AT2G20180.3 41.875 160 88 2 12 171 261 415 4.01e-28 110
Msa1083000 AT2G46970.2 41.317 167 83 5 10 173 179 333 7.00e-28 108
Msa1083000 AT2G46970.3 41.317 167 83 5 10 173 188 342 8.31e-28 108
Msa1083000 AT2G46970.1 41.317 167 83 5 10 173 210 364 1.05e-27 108
Msa1083000 AT2G20180.8 54.430 79 36 0 12 90 261 339 9.08e-24 96.7
Msa1083000 AT4G28800.1 40.278 144 77 5 2 141 223 361 1.07e-23 97.4
Msa1083000 AT4G28790.1 41.045 134 67 4 12 141 255 380 1.06e-21 91.7
Msa1083000 AT5G67110.1 48.000 100 50 2 20 118 79 177 1.59e-21 88.2
Msa1083000 AT3G59060.1 37.696 191 96 9 14 188 236 419 7.11e-21 89.7
Msa1083000 AT3G59060.3 53.571 84 38 1 14 97 236 318 1.07e-20 89.0
Msa1083000 AT3G59060.2 53.571 84 38 1 14 97 236 318 1.07e-20 89.0
Msa1083000 AT3G59060.4 53.571 84 38 1 14 97 236 318 1.07e-20 89.0
Msa1083000 AT4G36930.1 57.746 71 25 1 35 100 197 267 1.66e-20 88.2
Msa1083000 AT4G28800.2 39.286 140 78 4 2 141 235 367 3.48e-20 87.8
Msa1083000 AT2G43010.2 68.333 60 19 0 32 91 254 313 1.15e-18 83.2
Msa1083000 AT2G43010.1 68.333 60 19 0 32 91 254 313 1.16e-18 83.2
Msa1083000 AT2G43010.3 68.333 60 19 0 32 91 261 320 1.43e-18 83.2
Msa1083000 AT2G43010.4 68.333 60 19 0 32 91 254 313 1.47e-18 82.8
Msa1083000 AT2G43010.5 68.333 60 19 0 32 91 296 355 2.17e-18 82.8
Msa1083000 AT4G28815.2 42.857 91 35 2 27 117 66 139 3.30e-18 79.7
Msa1083000 AT4G00050.2 56.000 75 30 2 20 92 95 168 5.09e-18 80.5
Msa1083000 AT4G00050.3 56.000 75 30 2 20 92 197 270 7.79e-18 80.9
Msa1083000 AT4G00050.1 56.000 75 30 2 20 92 197 270 7.99e-18 80.9
Msa1083000 AT4G28815.1 40.206 97 41 2 27 123 142 221 9.05e-18 79.7
Msa1083000 AT2G24260.2 57.143 56 24 0 40 95 46 101 1.01e-17 79.0
Msa1083000 AT3G62090.2 36.842 171 97 7 23 189 176 339 1.59e-17 79.7
Msa1083000 AT3G62090.1 36.842 171 97 7 23 189 159 322 1.61e-17 79.7
Msa1083000 AT4G28790.2 50.000 78 38 1 12 89 255 331 4.09e-17 78.2
Msa1083000 AT2G24260.1 57.143 56 24 0 40 95 149 204 4.14e-17 78.6
Msa1083000 AT4G30980.1 55.357 56 25 0 40 95 141 196 1.37e-16 76.6
Msa1083000 AT4G30980.2 55.357 56 25 0 40 95 189 244 2.53e-16 76.3
Msa1083000 AT5G58010.1 43.373 83 41 2 14 95 88 165 4.93e-16 75.1
Msa1083000 AT4G28811.1 48.276 87 40 2 10 92 329 414 1.13e-13 69.3
Msa1083000 AT5G61270.2 45.882 85 42 1 9 93 56 136 6.14e-13 66.2
Msa1083000 AT5G61270.3 45.882 85 42 1 9 93 56 136 6.14e-13 66.2
Msa1083000 AT5G50915.3 39.326 89 52 2 15 101 121 209 8.20e-13 65.9
Msa1083000 AT5G50915.4 39.326 89 52 2 15 101 121 209 8.20e-13 65.9
Msa1083000 AT5G61270.1 45.882 85 42 1 9 93 144 224 1.01e-12 66.2
Msa1083000 AT1G10120.2 48.387 62 31 1 40 100 217 278 1.19e-12 65.9
Msa1083000 AT1G10120.1 48.387 62 31 1 40 100 217 278 1.19e-12 65.9
Msa1083000 AT5G50915.1 39.326 89 52 2 15 101 121 209 1.58e-12 65.1
Msa1083000 AT5G50915.2 39.326 89 52 2 15 101 121 209 1.58e-12 65.1
Msa1083000 AT1G02340.2 40.698 86 38 2 7 92 112 184 2.12e-12 64.7
Msa1083000 AT1G02340.1 40.698 86 38 2 7 92 119 191 2.17e-12 64.7
Msa1083000 AT1G68920.3 43.939 66 36 1 40 104 313 378 7.47e-12 63.9
Msa1083000 AT1G68920.1 43.939 66 36 1 40 104 314 379 8.15e-12 63.5
Msa1083000 AT1G68920.4 43.939 66 36 1 40 104 314 379 8.15e-12 63.5
Msa1083000 AT1G68920.2 43.939 66 36 1 40 104 314 379 8.15e-12 63.5
Msa1083000 AT4G36540.1 35.227 88 55 2 14 100 127 213 1.39e-11 62.4
Msa1083000 AT4G36540.2 35.227 88 55 2 14 100 127 213 1.43e-11 62.4
Msa1083000 AT4G34530.1 41.176 68 39 1 40 106 183 250 1.49e-11 62.8
Msa1083000 AT1G26260.5 42.424 66 37 1 40 104 212 277 1.53e-11 62.8
Msa1083000 AT2G46510.1 50.000 52 26 0 40 91 396 447 1.60e-11 62.8
Msa1083000 AT1G63650.3 36.170 94 46 2 2 95 382 461 1.62e-11 62.8
Msa1083000 AT1G63650.1 36.170 94 46 2 2 95 382 461 1.62e-11 62.8
Msa1083000 AT1G63650.2 36.170 94 46 2 2 95 382 461 1.62e-11 62.8
Msa1083000 AT1G26260.4 42.424 66 37 1 40 104 234 299 1.68e-11 62.8
Msa1083000 AT1G26260.1 42.424 66 37 1 40 104 234 299 1.68e-11 62.8
Msa1083000 AT1G26260.6 42.424 66 37 1 40 104 234 299 1.68e-11 62.8
Msa1083000 AT1G26260.2 42.424 66 37 1 40 104 234 299 1.68e-11 62.8
Msa1083000 AT5G62610.2 49.091 55 27 1 40 93 164 218 1.72e-11 62.0
Msa1083000 AT5G62610.1 49.091 55 27 1 40 93 164 218 1.72e-11 62.0
Msa1083000 AT1G25330.1 39.286 84 46 3 29 108 105 187 1.86e-11 61.2
Msa1083000 AT1G26260.3 42.424 66 37 1 40 104 183 248 2.06e-11 62.4
Msa1083000 AT5G43175.1 35.443 79 44 1 40 118 143 214 2.13e-11 61.2
Msa1083000 AT2G18300.2 43.548 62 34 1 40 100 196 257 2.16e-11 62.0
Msa1083000 AT2G18300.1 43.548 62 34 1 40 100 196 257 2.21e-11 62.0
Msa1083000 AT1G01260.1 39.189 74 45 0 22 95 416 489 2.25e-11 62.4
Msa1083000 AT1G01260.2 39.189 74 45 0 22 95 416 489 2.25e-11 62.4
Msa1083000 AT1G01260.3 39.189 74 45 0 22 95 416 489 2.25e-11 62.4
Msa1083000 AT3G23690.1 42.424 66 37 1 40 104 202 267 2.66e-11 62.0
Msa1083000 AT2G18300.3 43.548 62 34 1 40 100 196 257 2.80e-11 62.0
Msa1083000 AT1G59640.1 45.455 55 29 1 40 93 147 201 3.15e-11 61.2
Msa1083000 AT3G07340.2 47.273 55 28 1 40 93 269 323 4.74e-11 61.2
Msa1083000 AT4G16430.1 36.585 82 52 0 9 90 290 371 4.87e-11 61.2
Msa1083000 AT5G48560.2 47.273 55 28 1 40 93 312 366 5.20e-11 61.2
Msa1083000 AT5G48560.1 47.273 55 28 1 40 93 312 366 5.43e-11 61.2
Msa1083000 AT3G07340.1 47.273 55 28 1 40 93 269 323 5.51e-11 61.2
Msa1083000 AT2G14760.1 32.353 102 60 2 20 119 226 320 5.82e-11 60.8
Msa1083000 AT1G18400.2 47.273 55 28 1 40 93 156 210 6.09e-11 60.1
Msa1083000 AT1G18400.1 47.273 55 28 1 40 93 156 210 6.91e-11 60.1
Msa1083000 AT4G00120.1 49.180 61 27 1 35 91 114 174 7.39e-11 59.3
Msa1083000 AT1G59640.2 45.455 55 29 1 40 93 147 201 9.20e-11 60.5

Find 110 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAACATTTGATGGGTTTC+AGG 0.156734 7_2:+83208380 Msa1083000:CDS
TTTCTCTTTCCTCTAATTCT+AGG 0.178319 7_2:-83207391 None:intergenic
GACCCTCAAGCTTCAGTTAC+AGG 0.189644 7_2:+83208163 Msa1083000:CDS
TCACATACCTTATTGCAATT+TGG 0.224679 7_2:-83207983 None:intergenic
TTGGATACCATGTTGAAAAT+TGG 0.242044 7_2:-83209214 None:intergenic
GAGCCTATGCATAATATTCT+TGG 0.269072 7_2:-83208631 None:intergenic
AGTTTGTGTACGTTGTTTCT+AGG 0.282978 7_2:-83206886 None:intergenic
TTGACATGTGTGGTGGTAAT+TGG 0.291651 7_2:-83208489 None:intergenic
CTAGATATCCTTTCCTTGAT+TGG 0.293531 7_2:+83208827 Msa1083000:three_prime_UTR
ACACCAACACCAACCTCTTT+TGG 0.299511 7_2:+83208559 Msa1083000:CDS
TTCTGTGCAATTAGTGTGTT+TGG 0.314866 7_2:+83208752 Msa1083000:three_prime_UTR
CCTTTCATTCCTCCTATCAT+TGG 0.324461 7_2:+83208523 Msa1083000:CDS
CTTACATCATCACTTAAATA+TGG 0.331025 7_2:-83207529 None:intergenic
CATGTTGCTAATGAAGTAAA+TGG 0.334017 7_2:-83206936 None:intergenic
ATGTCCTTCCAGGTTGATTC+TGG 0.340577 7_2:-83208585 None:intergenic
GACTAGCCACATGTCCTTCC+AGG 0.347583 7_2:-83208595 None:intergenic
ACCAATGCACCTAGAATTAG+AGG 0.347789 7_2:+83207382 Msa1083000:five_prime_UTR
CCATCACCCATTTGTGGAAT+AGG 0.357478 7_2:-83208418 None:intergenic
AACATCATAAAATGATTAAC+TGG 0.360190 7_2:-83208319 None:intergenic
GTGAGTACCATTCTTGCTTT+GGG 0.363450 7_2:-83207029 None:intergenic
TTCATATGCAGAGTTTGATT+TGG 0.364667 7_2:-83207302 None:intergenic
TGTGAGTACCATTCTTGCTT+TGG 0.367609 7_2:-83207030 None:intergenic
AACGACAGAGTTCAGATGTT+TGG 0.380475 7_2:+83208457 Msa1083000:CDS
TATGAATGCACAACATTTGA+TGG 0.383363 7_2:+83208372 Msa1083000:CDS
ACAGTTTCCTATTCCACAAA+TGG 0.388703 7_2:+83208411 Msa1083000:CDS
TCCTCTAATTCTAGGTGCAT+TGG 0.390333 7_2:-83207383 None:intergenic
GCTCATACCAAATTGCAATA+AGG 0.391698 7_2:+83207976 Msa1083000:CDS
CTAGATTTCTTGAAATATGT+TGG 0.391916 7_2:-83209151 None:intergenic
CAATCAAGGAAAGGATATCT+AGG 0.393409 7_2:-83208826 None:intergenic
AACATATAAGTGAGCGGAAA+AGG 0.400492 7_2:-83209030 None:intergenic
GACGTTGCAGATTATGTCAA+TGG 0.409902 7_2:+83208279 Msa1083000:intron
AAAAGAGACATTTGATATGT+TGG 0.414165 7_2:+83208695 Msa1083000:three_prime_UTR
AGCCTATGCATAATATTCTT+GGG 0.415276 7_2:-83208630 None:intergenic
AAACAACGTACACAAACTTT+AGG 0.416300 7_2:+83206891 Msa1083000:five_prime_UTR
ACCAAAGTTTAGATCATTTG+AGG 0.426290 7_2:-83207473 None:intergenic
GTGAGTTTGTTGTTGCAGTT+TGG 0.430149 7_2:-83207099 None:intergenic
CAGTCCTCCCAAAGCAAGAA+TGG 0.434708 7_2:+83207022 Msa1083000:five_prime_UTR
AAAGAGACATTTGATATGTT+GGG 0.434907 7_2:+83208696 Msa1083000:three_prime_UTR
GTTTGGTTTGAATCCACTCT+TGG 0.436210 7_2:-83207082 None:intergenic
AATTCATAATTTATCTGAAA+GGG 0.436637 7_2:+83207802 Msa1083000:CDS
GCCTCAAATGATCTAAACTT+TGG 0.436672 7_2:+83207472 Msa1083000:five_prime_UTR
ACCAACTTTGATACTATTGT+GGG 0.442824 7_2:+83208923 Msa1083000:three_prime_UTR
TTGATTCTGGTTACCAAAAG+AGG 0.453744 7_2:-83208572 None:intergenic
ACTCTGTTTCCATTATGAGC+TGG 0.454011 7_2:-83207755 None:intergenic
CTCACAGAAACAGTACTTGA+TGG 0.454187 7_2:+83207117 Msa1083000:five_prime_UTR
TGTGTACGTTGTTTCTAGGT+TGG 0.455594 7_2:-83206882 None:intergenic
TGAATCATTAAAGAAAAGTC+GGG 0.457465 7_2:+83208793 Msa1083000:three_prime_UTR
AAAGAAAAGCCAGCTCATAA+TGG 0.458159 7_2:+83207746 Msa1083000:CDS
CACCAACTTTGATACTATTG+TGG 0.459310 7_2:+83208922 Msa1083000:three_prime_UTR
AGGAGGAATGAAAGGTGCAT+TGG 0.466560 7_2:-83208515 None:intergenic
GGAGGAATGAAAGGTGCATT+GGG 0.473309 7_2:-83208514 None:intergenic
GTGGAAGAGTTTCCAATGAT+AGG 0.480699 7_2:-83208535 None:intergenic
TACCTGTAACTGAAGCTTGA+GGG 0.481997 7_2:-83208165 None:intergenic
GTGACACCATCACCCATTTG+TGG 0.484725 7_2:-83208424 None:intergenic
TTGAATCATTAAAGAAAAGT+CGG 0.488312 7_2:+83208792 Msa1083000:three_prime_UTR
CAGTTTCCTATTCCACAAAT+GGG 0.491361 7_2:+83208412 Msa1083000:CDS
ATGCATAATATTCTTGGGCA+TGG 0.495441 7_2:-83208625 None:intergenic
AGTGTAAGTTTGAACATGAA+AGG 0.504506 7_2:+83209268 Msa1083000:three_prime_UTR
TAATTCTAGGTGCATTGGTA+TGG 0.508040 7_2:-83207378 None:intergenic
TGAAGAAACACAAGAAAATA+CGG 0.510993 7_2:+83207721 Msa1083000:CDS
AATTTACCTACCAACAAAAG+AGG 0.512256 7_2:+83209121 Msa1083000:three_prime_UTR
GATACTATTGTGGGGTTGCG+AGG 0.513324 7_2:+83208932 Msa1083000:three_prime_UTR
TGGTGTTAGAAAATCATATG+AGG 0.518657 7_2:+83207492 Msa1083000:five_prime_UTR
GAATTGAGAAATACAGTAGC+TGG 0.519086 7_2:-83208732 None:intergenic
TCAAGTGAGCATACAGAAGA+TGG 0.531560 7_2:-83207448 None:intergenic
ACAGAGTCAAGAGAAGCTAC+AGG 0.536275 7_2:+83207771 Msa1083000:CDS
TCACAGAAACAGTACTTGAT+GGG 0.539019 7_2:+83207118 Msa1083000:five_prime_UTR
ATGAATGCACAACATTTGAT+GGG 0.539585 7_2:+83208373 Msa1083000:CDS
AAATTCATAATTTATCTGAA+AGG 0.542829 7_2:+83207801 Msa1083000:CDS
ACGTTGCAGATTATGTCAAT+GGG 0.542904 7_2:+83208280 Msa1083000:intron
GGAATAGGAAACTGTATTTG+TGG 0.547372 7_2:-83208403 None:intergenic
TGCATAATATTCTTGGGCAT+GGG 0.547979 7_2:-83208624 None:intergenic
CATGTGTGGTGGTAATTGGT+TGG 0.548002 7_2:-83208485 None:intergenic
AGAGGTTGGTGTTGGTGTGG+TGG 0.551444 7_2:-83208554 None:intergenic
TTCATGTTCATATGATGTGC+GGG 0.552429 7_2:-83208343 None:intergenic
AGTACCATTCTTGCTTTGGG+AGG 0.558557 7_2:-83207026 None:intergenic
CCTATTCCACAAATGGGTGA+TGG 0.561913 7_2:+83208418 Msa1083000:CDS
TTGATGTTGTGAGCCAATCA+AGG 0.563413 7_2:-83208840 None:intergenic
TTCTGGTTACCAAAAGAGGT+TGG 0.567323 7_2:-83208568 None:intergenic
TTGGACTTGTGTGTACGTAA+AGG 0.572746 7_2:-83206863 None:intergenic
CCCCACAATAGTATCAAAGT+TGG 0.573062 7_2:-83208924 None:intergenic
TCAGAATGTTCATCAACGGT+TGG 0.575923 7_2:-83207343 None:intergenic
AGCTTCAGAATGTTCATCAA+CGG 0.575933 7_2:-83207347 None:intergenic
TTTGGTAACCAGAATCAACC+TGG 0.577623 7_2:+83208577 Msa1083000:CDS
CTCATTCAAGACGTAAGACA+AGG 0.579237 7_2:-83209183 None:intergenic
TTACCTGTAACTGAAGCTTG+AGG 0.590352 7_2:-83208166 None:intergenic
AATCAAGGAAAGGATATCTA+GGG 0.596677 7_2:-83208825 None:intergenic
ACTTAAATATGGAGAGTCAT+CGG 0.599086 7_2:-83207518 None:intergenic
ATACTATTGTGGGGTTGCGA+GGG 0.600676 7_2:+83208933 Msa1083000:three_prime_UTR
ATTCATGTTCATATGATGTG+CGG 0.605271 7_2:-83208344 None:intergenic
CCAATGATAGGAGGAATGAA+AGG 0.605339 7_2:-83208523 None:intergenic
GGACTGAAAATCAGTGTGAG+AGG 0.609414 7_2:-83207005 None:intergenic
AGGTGCATTGGTATGGCTAG+AGG 0.613493 7_2:-83207371 None:intergenic
AGAATACTCACTCACACATG+TGG 0.623611 7_2:+83208993 Msa1083000:three_prime_UTR
GTTGTGAGCCAATCAAGGAA+AGG 0.623915 7_2:-83208835 None:intergenic
GAAGAGTTTCCAATGATAGG+AGG 0.626184 7_2:-83208532 None:intergenic
GTTGATTTGAGAAACACTGC+AGG 0.646249 7_2:-83207190 None:intergenic
TGATTGGCTCACAACATCAA+CGG 0.646597 7_2:+83208843 Msa1083000:three_prime_UTR
TTACCAAAAGAGGTTGGTGT+TGG 0.647408 7_2:-83208562 None:intergenic
TGCCCAAGAATATTATGCAT+AGG 0.648045 7_2:+83208628 Msa1083000:three_prime_UTR
AGGGAAGCCTAAAAGAGTGA+AGG 0.651655 7_2:+83208952 Msa1083000:three_prime_UTR
CACAGAAACAGTACTTGATG+GGG 0.651724 7_2:+83207119 Msa1083000:five_prime_UTR
TGCAACAACATATAAGTGAG+CGG 0.659877 7_2:-83209036 None:intergenic
CCAACTTTGATACTATTGTG+GGG 0.663117 7_2:+83208924 Msa1083000:three_prime_UTR
GTAACCAGAATCAACCTGGA+AGG 0.666181 7_2:+83208581 Msa1083000:CDS
AAAAGAGGTTGGTGTTGGTG+TGG 0.666327 7_2:-83208557 None:intergenic
AATCAACCTGGAAGGACATG+TGG 0.668906 7_2:+83208589 Msa1083000:CDS
TCATTCAAGACGTAAGACAA+GGG 0.693376 7_2:-83209182 None:intergenic
TTGGGAATTGACATGTGTGG+TGG 0.729000 7_2:-83208496 None:intergenic
GCATTGGGAATTGACATGTG+TGG 0.733578 7_2:-83208499 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTCATAATTTATCTGAA+AGG + chr7_2:83207801-83207820 Msa1083000:CDS 15.0%
!! AATTCATAATTTATCTGAAA+GGG + chr7_2:83207802-83207821 Msa1083000:CDS 15.0%
!! AAATTCATAATTTATCTGAA+AGG + chr7_2:83207801-83207820 Msa1083000:CDS 15.0%
!! AATTCATAATTTATCTGAAA+GGG + chr7_2:83207802-83207821 Msa1083000:CDS 15.0%
!! ATTGTTGCATAGAAAATTTA+AGG - chr7_2:83208202-83208221 None:intergenic 20.0%
!! AACATCATAAAATGATTAAC+TGG - chr7_2:83208322-83208341 None:intergenic 20.0%
!! TTGAATCATTAAAGAAAAGT+CGG + chr7_2:83208792-83208811 Msa1083000:three_prime_UTR 20.0%
!! TATTAAAAATCATTGTCAGA+AGG - chr7_2:83208875-83208894 None:intergenic 20.0%
!!! TGACAATGATTTTTAATACA+AGG + chr7_2:83208877-83208896 Msa1083000:three_prime_UTR 20.0%
!! ATTGTTGCATAGAAAATTTA+AGG - chr7_2:83208202-83208221 None:intergenic 20.0%
!! AACATCATAAAATGATTAAC+TGG - chr7_2:83208322-83208341 None:intergenic 20.0%
!! TTGAATCATTAAAGAAAAGT+CGG + chr7_2:83208792-83208811 Msa1083000:three_prime_UTR 20.0%
!! TATTAAAAATCATTGTCAGA+AGG - chr7_2:83208875-83208894 None:intergenic 20.0%
!!! TGACAATGATTTTTAATACA+AGG + chr7_2:83208877-83208896 Msa1083000:three_prime_UTR 20.0%
! CTTACATCATCACTTAAATA+TGG - chr7_2:83207532-83207551 None:intergenic 25.0%
!! TATTTAAGTGATGATGTAAG+TGG + chr7_2:83207532-83207551 Msa1083000:intron 25.0%
! TACAAACGTAAAATAGCATA+TGG - chr7_2:83207569-83207588 None:intergenic 25.0%
! TGAAGAAACACAAGAAAATA+CGG + chr7_2:83207721-83207740 Msa1083000:CDS 25.0%
! AATAAAGTTCAACTTCAACA+AGG - chr7_2:83208044-83208063 None:intergenic 25.0%
!!! TGCTTTGTTTTTGTTATAGA+TGG + chr7_2:83208100-83208119 Msa1083000:intron 25.0%
! AAAAGAGACATTTGATATGT+TGG + chr7_2:83208695-83208714 Msa1083000:three_prime_UTR 25.0%
! AAAGAGACATTTGATATGTT+GGG + chr7_2:83208696-83208715 Msa1083000:three_prime_UTR 25.0%
! TCTTTAATGATTCAAAAAGC+TGG - chr7_2:83208787-83208806 None:intergenic 25.0%
! TGAATCATTAAAGAAAAGTC+GGG + chr7_2:83208793-83208812 Msa1083000:three_prime_UTR 25.0%
! CTAGATTTCTTGAAATATGT+TGG - chr7_2:83209154-83209173 None:intergenic 25.0%
! CTTACATCATCACTTAAATA+TGG - chr7_2:83207532-83207551 None:intergenic 25.0%
!! TATTTAAGTGATGATGTAAG+TGG + chr7_2:83207532-83207551 Msa1083000:intron 25.0%
! TACAAACGTAAAATAGCATA+TGG - chr7_2:83207569-83207588 None:intergenic 25.0%
! TGAAGAAACACAAGAAAATA+CGG + chr7_2:83207721-83207740 Msa1083000:CDS 25.0%
! AATAAAGTTCAACTTCAACA+AGG - chr7_2:83208044-83208063 None:intergenic 25.0%
!!! TGCTTTGTTTTTGTTATAGA+TGG + chr7_2:83208100-83208119 Msa1083000:intron 25.0%
! AAAAGAGACATTTGATATGT+TGG + chr7_2:83208695-83208714 Msa1083000:three_prime_UTR 25.0%
! AAAGAGACATTTGATATGTT+GGG + chr7_2:83208696-83208715 Msa1083000:three_prime_UTR 25.0%
! TCTTTAATGATTCAAAAAGC+TGG - chr7_2:83208787-83208806 None:intergenic 25.0%
! TGAATCATTAAAGAAAAGTC+GGG + chr7_2:83208793-83208812 Msa1083000:three_prime_UTR 25.0%
! CTAGATTTCTTGAAATATGT+TGG - chr7_2:83209154-83209173 None:intergenic 25.0%
AAACAACGTACACAAACTTT+AGG + chr7_2:83206891-83206910 Msa1083000:five_prime_UTR 30.0%
CATGTTGCTAATGAAGTAAA+TGG - chr7_2:83206939-83206958 None:intergenic 30.0%
GGGTGTGAATATCAAAAAAA+TGG + chr7_2:83207139-83207158 Msa1083000:five_prime_UTR 30.0%
TTCATATGCAGAGTTTGATT+TGG - chr7_2:83207305-83207324 None:intergenic 30.0%
TTTCTCTTTCCTCTAATTCT+AGG - chr7_2:83207394-83207413 None:intergenic 30.0%
ACCAAAGTTTAGATCATTTG+AGG - chr7_2:83207476-83207495 None:intergenic 30.0%
! TGGTGTTAGAAAATCATATG+AGG + chr7_2:83207492-83207511 Msa1083000:five_prime_UTR 30.0%
ACTTAAATATGGAGAGTCAT+CGG - chr7_2:83207521-83207540 None:intergenic 30.0%
ATAATTTATCTGAAAGGGTG+AGG + chr7_2:83207807-83207826 Msa1083000:intron 30.0%
TCACATACCTTATTGCAATT+TGG - chr7_2:83207986-83208005 None:intergenic 30.0%
ATTCATGTTCATATGATGTG+CGG - chr7_2:83208347-83208366 None:intergenic 30.0%
TATGAATGCACAACATTTGA+TGG + chr7_2:83208372-83208391 Msa1083000:CDS 30.0%
ATGAATGCACAACATTTGAT+GGG + chr7_2:83208373-83208392 Msa1083000:CDS 30.0%
AGCCTATGCATAATATTCTT+GGG - chr7_2:83208633-83208652 None:intergenic 30.0%
! TCTTTTAGCATCATGTACTT+TGG - chr7_2:83208681-83208700 None:intergenic 30.0%
TTAATGATTCAAAAAGCTGG+TGG - chr7_2:83208784-83208803 None:intergenic 30.0%
AATCAAGGAAAGGATATCTA+GGG - chr7_2:83208828-83208847 None:intergenic 30.0%
ACCAACTTTGATACTATTGT+GGG + chr7_2:83208923-83208942 Msa1083000:three_prime_UTR 30.0%
! TAATGATCCTTCACTCTTTT+AGG - chr7_2:83208962-83208981 None:intergenic 30.0%
AATTTACCTACCAACAAAAG+AGG + chr7_2:83209121-83209140 Msa1083000:three_prime_UTR 30.0%
! AATTTTCCTCTTTTGTTGGT+AGG - chr7_2:83209130-83209149 None:intergenic 30.0%
! TGGAAATTTTCCTCTTTTGT+TGG - chr7_2:83209134-83209153 None:intergenic 30.0%
! TTGCTTACCAATTTTCAACA+TGG + chr7_2:83209207-83209226 Msa1083000:three_prime_UTR 30.0%
TTGGATACCATGTTGAAAAT+TGG - chr7_2:83209217-83209236 None:intergenic 30.0%
AGTGTAAGTTTGAACATGAA+AGG + chr7_2:83209268-83209287 Msa1083000:three_prime_UTR 30.0%
AAACAACGTACACAAACTTT+AGG + chr7_2:83206891-83206910 Msa1083000:five_prime_UTR 30.0%
CATGTTGCTAATGAAGTAAA+TGG - chr7_2:83206939-83206958 None:intergenic 30.0%
GGGTGTGAATATCAAAAAAA+TGG + chr7_2:83207139-83207158 Msa1083000:five_prime_UTR 30.0%
TTCATATGCAGAGTTTGATT+TGG - chr7_2:83207305-83207324 None:intergenic 30.0%
TTTCTCTTTCCTCTAATTCT+AGG - chr7_2:83207394-83207413 None:intergenic 30.0%
ACCAAAGTTTAGATCATTTG+AGG - chr7_2:83207476-83207495 None:intergenic 30.0%
! TGGTGTTAGAAAATCATATG+AGG + chr7_2:83207492-83207511 Msa1083000:five_prime_UTR 30.0%
ACTTAAATATGGAGAGTCAT+CGG - chr7_2:83207521-83207540 None:intergenic 30.0%
ATAATTTATCTGAAAGGGTG+AGG + chr7_2:83207807-83207826 Msa1083000:intron 30.0%
TCACATACCTTATTGCAATT+TGG - chr7_2:83207986-83208005 None:intergenic 30.0%
ATTCATGTTCATATGATGTG+CGG - chr7_2:83208347-83208366 None:intergenic 30.0%
TATGAATGCACAACATTTGA+TGG + chr7_2:83208372-83208391 Msa1083000:CDS 30.0%
ATGAATGCACAACATTTGAT+GGG + chr7_2:83208373-83208392 Msa1083000:CDS 30.0%
AGCCTATGCATAATATTCTT+GGG - chr7_2:83208633-83208652 None:intergenic 30.0%
! TCTTTTAGCATCATGTACTT+TGG - chr7_2:83208681-83208700 None:intergenic 30.0%
TTAATGATTCAAAAAGCTGG+TGG - chr7_2:83208784-83208803 None:intergenic 30.0%
AATCAAGGAAAGGATATCTA+GGG - chr7_2:83208828-83208847 None:intergenic 30.0%
ACCAACTTTGATACTATTGT+GGG + chr7_2:83208923-83208942 Msa1083000:three_prime_UTR 30.0%
! TAATGATCCTTCACTCTTTT+AGG - chr7_2:83208962-83208981 None:intergenic 30.0%
AATTTACCTACCAACAAAAG+AGG + chr7_2:83209121-83209140 Msa1083000:three_prime_UTR 30.0%
! AATTTTCCTCTTTTGTTGGT+AGG - chr7_2:83209130-83209149 None:intergenic 30.0%
! TGGAAATTTTCCTCTTTTGT+TGG - chr7_2:83209134-83209153 None:intergenic 30.0%
! TTGCTTACCAATTTTCAACA+TGG + chr7_2:83209207-83209226 Msa1083000:three_prime_UTR 30.0%
TTGGATACCATGTTGAAAAT+TGG - chr7_2:83209217-83209236 None:intergenic 30.0%
AGTGTAAGTTTGAACATGAA+AGG + chr7_2:83209268-83209287 Msa1083000:three_prime_UTR 30.0%
!! AGTTTGTGTACGTTGTTTCT+AGG - chr7_2:83206889-83206908 None:intergenic 35.0%
TCAGAGATGACAAAAAGCAA+TGG + chr7_2:83206974-83206993 Msa1083000:five_prime_UTR 35.0%
ATGACAAAAAGCAATGGCTT+AGG + chr7_2:83206980-83206999 Msa1083000:five_prime_UTR 35.0%
! TCCTCTAAAAAAACCAAGAG+TGG + chr7_2:83207069-83207088 Msa1083000:five_prime_UTR 35.0%
!!! TCCACTCTTGGTTTTTTTAG+AGG - chr7_2:83207073-83207092 None:intergenic 35.0%
TCACAGAAACAGTACTTGAT+GGG + chr7_2:83207118-83207137 Msa1083000:five_prime_UTR 35.0%
AGCTTCAGAATGTTCATCAA+CGG - chr7_2:83207350-83207369 None:intergenic 35.0%
! TAATTCTAGGTGCATTGGTA+TGG - chr7_2:83207381-83207400 None:intergenic 35.0%
GCCTCAAATGATCTAAACTT+TGG + chr7_2:83207472-83207491 Msa1083000:five_prime_UTR 35.0%
ATCAAGCTTCGTAAGAATGA+TGG - chr7_2:83207680-83207699 None:intergenic 35.0%
AAAGAAAAGCCAGCTCATAA+TGG + chr7_2:83207746-83207765 Msa1083000:CDS 35.0%
GCTCATACCAAATTGCAATA+AGG + chr7_2:83207976-83207995 Msa1083000:CDS 35.0%
ACGTTGCAGATTATGTCAAT+GGG + chr7_2:83208280-83208299 Msa1083000:intron 35.0%
TTCATGTTCATATGATGTGC+GGG - chr7_2:83208346-83208365 None:intergenic 35.0%
GGAATAGGAAACTGTATTTG+TGG - chr7_2:83208406-83208425 None:intergenic 35.0%
ACAGTTTCCTATTCCACAAA+TGG + chr7_2:83208411-83208430 Msa1083000:CDS 35.0%
CAGTTTCCTATTCCACAAAT+GGG + chr7_2:83208412-83208431 Msa1083000:CDS 35.0%
! TTGATTCTGGTTACCAAAAG+AGG - chr7_2:83208575-83208594 None:intergenic 35.0%
TGCATAATATTCTTGGGCAT+GGG - chr7_2:83208627-83208646 None:intergenic 35.0%
ATGCATAATATTCTTGGGCA+TGG - chr7_2:83208628-83208647 None:intergenic 35.0%
TGCCCAAGAATATTATGCAT+AGG + chr7_2:83208628-83208647 Msa1083000:three_prime_UTR 35.0%
GAGCCTATGCATAATATTCT+TGG - chr7_2:83208634-83208653 None:intergenic 35.0%
GAATTGAGAAATACAGTAGC+TGG - chr7_2:83208735-83208754 None:intergenic 35.0%
TTCTGTGCAATTAGTGTGTT+TGG + chr7_2:83208752-83208771 Msa1083000:three_prime_UTR 35.0%
CAATCAAGGAAAGGATATCT+AGG - chr7_2:83208829-83208848 None:intergenic 35.0%
CTAGATATCCTTTCCTTGAT+TGG + chr7_2:83208827-83208846 Msa1083000:three_prime_UTR 35.0%
CACCAACTTTGATACTATTG+TGG + chr7_2:83208922-83208941 Msa1083000:three_prime_UTR 35.0%
CCAACTTTGATACTATTGTG+GGG + chr7_2:83208924-83208943 Msa1083000:three_prime_UTR 35.0%
AACATATAAGTGAGCGGAAA+AGG - chr7_2:83209033-83209052 None:intergenic 35.0%
TGCAACAACATATAAGTGAG+CGG - chr7_2:83209039-83209058 None:intergenic 35.0%
TCATTCAAGACGTAAGACAA+GGG - chr7_2:83209185-83209204 None:intergenic 35.0%
! GTTTTGTACGTCATTAGACT+TGG - chr7_2:83209236-83209255 None:intergenic 35.0%
!! AGTTTGTGTACGTTGTTTCT+AGG - chr7_2:83206889-83206908 None:intergenic 35.0%
TCAGAGATGACAAAAAGCAA+TGG + chr7_2:83206974-83206993 Msa1083000:five_prime_UTR 35.0%
ATGACAAAAAGCAATGGCTT+AGG + chr7_2:83206980-83206999 Msa1083000:five_prime_UTR 35.0%
! TCCTCTAAAAAAACCAAGAG+TGG + chr7_2:83207069-83207088 Msa1083000:five_prime_UTR 35.0%
!!! TCCACTCTTGGTTTTTTTAG+AGG - chr7_2:83207073-83207092 None:intergenic 35.0%
TCACAGAAACAGTACTTGAT+GGG + chr7_2:83207118-83207137 Msa1083000:five_prime_UTR 35.0%
AGCTTCAGAATGTTCATCAA+CGG - chr7_2:83207350-83207369 None:intergenic 35.0%
! TAATTCTAGGTGCATTGGTA+TGG - chr7_2:83207381-83207400 None:intergenic 35.0%
GCCTCAAATGATCTAAACTT+TGG + chr7_2:83207472-83207491 Msa1083000:five_prime_UTR 35.0%
ATCAAGCTTCGTAAGAATGA+TGG - chr7_2:83207680-83207699 None:intergenic 35.0%
AAAGAAAAGCCAGCTCATAA+TGG + chr7_2:83207746-83207765 Msa1083000:CDS 35.0%
GCTCATACCAAATTGCAATA+AGG + chr7_2:83207976-83207995 Msa1083000:CDS 35.0%
ACGTTGCAGATTATGTCAAT+GGG + chr7_2:83208280-83208299 Msa1083000:intron 35.0%
TTCATGTTCATATGATGTGC+GGG - chr7_2:83208346-83208365 None:intergenic 35.0%
GGAATAGGAAACTGTATTTG+TGG - chr7_2:83208406-83208425 None:intergenic 35.0%
ACAGTTTCCTATTCCACAAA+TGG + chr7_2:83208411-83208430 Msa1083000:CDS 35.0%
CAGTTTCCTATTCCACAAAT+GGG + chr7_2:83208412-83208431 Msa1083000:CDS 35.0%
! TTGATTCTGGTTACCAAAAG+AGG - chr7_2:83208575-83208594 None:intergenic 35.0%
TGCATAATATTCTTGGGCAT+GGG - chr7_2:83208627-83208646 None:intergenic 35.0%
ATGCATAATATTCTTGGGCA+TGG - chr7_2:83208628-83208647 None:intergenic 35.0%
TGCCCAAGAATATTATGCAT+AGG + chr7_2:83208628-83208647 Msa1083000:three_prime_UTR 35.0%
GAGCCTATGCATAATATTCT+TGG - chr7_2:83208634-83208653 None:intergenic 35.0%
GAATTGAGAAATACAGTAGC+TGG - chr7_2:83208735-83208754 None:intergenic 35.0%
TTCTGTGCAATTAGTGTGTT+TGG + chr7_2:83208752-83208771 Msa1083000:three_prime_UTR 35.0%
CAATCAAGGAAAGGATATCT+AGG - chr7_2:83208829-83208848 None:intergenic 35.0%
CTAGATATCCTTTCCTTGAT+TGG + chr7_2:83208827-83208846 Msa1083000:three_prime_UTR 35.0%
CACCAACTTTGATACTATTG+TGG + chr7_2:83208922-83208941 Msa1083000:three_prime_UTR 35.0%
CCAACTTTGATACTATTGTG+GGG + chr7_2:83208924-83208943 Msa1083000:three_prime_UTR 35.0%
AACATATAAGTGAGCGGAAA+AGG - chr7_2:83209033-83209052 None:intergenic 35.0%
TGCAACAACATATAAGTGAG+CGG - chr7_2:83209039-83209058 None:intergenic 35.0%
TCATTCAAGACGTAAGACAA+GGG - chr7_2:83209185-83209204 None:intergenic 35.0%
! GTTTTGTACGTCATTAGACT+TGG - chr7_2:83209236-83209255 None:intergenic 35.0%
TTGGACTTGTGTGTACGTAA+AGG - chr7_2:83206866-83206885 None:intergenic 40.0%
!! TGTGTACGTTGTTTCTAGGT+TGG - chr7_2:83206885-83206904 None:intergenic 40.0%
GTGAGTACCATTCTTGCTTT+GGG - chr7_2:83207032-83207051 None:intergenic 40.0%
TGTGAGTACCATTCTTGCTT+TGG - chr7_2:83207033-83207052 None:intergenic 40.0%
!! GTTTGGTTTGAATCCACTCT+TGG - chr7_2:83207085-83207104 None:intergenic 40.0%
!! GTGAGTTTGTTGTTGCAGTT+TGG - chr7_2:83207102-83207121 None:intergenic 40.0%
CTCACAGAAACAGTACTTGA+TGG + chr7_2:83207117-83207136 Msa1083000:five_prime_UTR 40.0%
CACAGAAACAGTACTTGATG+GGG + chr7_2:83207119-83207138 Msa1083000:five_prime_UTR 40.0%
!! GTTGATTTGAGAAACACTGC+AGG - chr7_2:83207193-83207212 None:intergenic 40.0%
TCAGAATGTTCATCAACGGT+TGG - chr7_2:83207346-83207365 None:intergenic 40.0%
ACCAATGCACCTAGAATTAG+AGG + chr7_2:83207382-83207401 Msa1083000:five_prime_UTR 40.0%
TCCTCTAATTCTAGGTGCAT+TGG - chr7_2:83207386-83207405 None:intergenic 40.0%
TCAAGTGAGCATACAGAAGA+TGG - chr7_2:83207451-83207470 None:intergenic 40.0%
TTACTATGAAGCACGAACAC+TGG + chr7_2:83207594-83207613 Msa1083000:intron 40.0%
ACTCTGTTTCCATTATGAGC+TGG - chr7_2:83207758-83207777 None:intergenic 40.0%
TACCTGTAACTGAAGCTTGA+GGG - chr7_2:83208168-83208187 None:intergenic 40.0%
TTACCTGTAACTGAAGCTTG+AGG - chr7_2:83208169-83208188 None:intergenic 40.0%
GACGTTGCAGATTATGTCAA+TGG + chr7_2:83208279-83208298 Msa1083000:intron 40.0%
!! CACAACATTTGATGGGTTTC+AGG + chr7_2:83208380-83208399 Msa1083000:CDS 40.0%
AACGACAGAGTTCAGATGTT+TGG + chr7_2:83208457-83208476 Msa1083000:CDS 40.0%
TTGACATGTGTGGTGGTAAT+TGG - chr7_2:83208492-83208511 None:intergenic 40.0%
CCAATGATAGGAGGAATGAA+AGG - chr7_2:83208526-83208545 None:intergenic 40.0%
CCTTTCATTCCTCCTATCAT+TGG + chr7_2:83208523-83208542 Msa1083000:CDS 40.0%
GAAGAGTTTCCAATGATAGG+AGG - chr7_2:83208535-83208554 None:intergenic 40.0%
GTGGAAGAGTTTCCAATGAT+AGG - chr7_2:83208538-83208557 None:intergenic 40.0%
!! TTACCAAAAGAGGTTGGTGT+TGG - chr7_2:83208565-83208584 None:intergenic 40.0%
! TTCTGGTTACCAAAAGAGGT+TGG - chr7_2:83208571-83208590 None:intergenic 40.0%
! TTTGGTAACCAGAATCAACC+TGG + chr7_2:83208577-83208596 Msa1083000:CDS 40.0%
TTGATGTTGTGAGCCAATCA+AGG - chr7_2:83208843-83208862 None:intergenic 40.0%
! TGATTGGCTCACAACATCAA+CGG + chr7_2:83208843-83208862 Msa1083000:three_prime_UTR 40.0%
CCCCACAATAGTATCAAAGT+TGG - chr7_2:83208927-83208946 None:intergenic 40.0%
AGAATACTCACTCACACATG+TGG + chr7_2:83208993-83209012 Msa1083000:three_prime_UTR 40.0%
CTCATTCAAGACGTAAGACA+AGG - chr7_2:83209186-83209205 None:intergenic 40.0%
TTGGACTTGTGTGTACGTAA+AGG - chr7_2:83206866-83206885 None:intergenic 40.0%
!! TGTGTACGTTGTTTCTAGGT+TGG - chr7_2:83206885-83206904 None:intergenic 40.0%
GTGAGTACCATTCTTGCTTT+GGG - chr7_2:83207032-83207051 None:intergenic 40.0%
TGTGAGTACCATTCTTGCTT+TGG - chr7_2:83207033-83207052 None:intergenic 40.0%
!! GTTTGGTTTGAATCCACTCT+TGG - chr7_2:83207085-83207104 None:intergenic 40.0%
!! GTGAGTTTGTTGTTGCAGTT+TGG - chr7_2:83207102-83207121 None:intergenic 40.0%
CTCACAGAAACAGTACTTGA+TGG + chr7_2:83207117-83207136 Msa1083000:five_prime_UTR 40.0%
CACAGAAACAGTACTTGATG+GGG + chr7_2:83207119-83207138 Msa1083000:five_prime_UTR 40.0%
!! GTTGATTTGAGAAACACTGC+AGG - chr7_2:83207193-83207212 None:intergenic 40.0%
TCAGAATGTTCATCAACGGT+TGG - chr7_2:83207346-83207365 None:intergenic 40.0%
ACCAATGCACCTAGAATTAG+AGG + chr7_2:83207382-83207401 Msa1083000:five_prime_UTR 40.0%
TCCTCTAATTCTAGGTGCAT+TGG - chr7_2:83207386-83207405 None:intergenic 40.0%
TCAAGTGAGCATACAGAAGA+TGG - chr7_2:83207451-83207470 None:intergenic 40.0%
TTACTATGAAGCACGAACAC+TGG + chr7_2:83207594-83207613 Msa1083000:intron 40.0%
ACTCTGTTTCCATTATGAGC+TGG - chr7_2:83207758-83207777 None:intergenic 40.0%
TACCTGTAACTGAAGCTTGA+GGG - chr7_2:83208168-83208187 None:intergenic 40.0%
TTACCTGTAACTGAAGCTTG+AGG - chr7_2:83208169-83208188 None:intergenic 40.0%
GACGTTGCAGATTATGTCAA+TGG + chr7_2:83208279-83208298 Msa1083000:intron 40.0%
!! CACAACATTTGATGGGTTTC+AGG + chr7_2:83208380-83208399 Msa1083000:CDS 40.0%
AACGACAGAGTTCAGATGTT+TGG + chr7_2:83208457-83208476 Msa1083000:CDS 40.0%
TTGACATGTGTGGTGGTAAT+TGG - chr7_2:83208492-83208511 None:intergenic 40.0%
CCAATGATAGGAGGAATGAA+AGG - chr7_2:83208526-83208545 None:intergenic 40.0%
CCTTTCATTCCTCCTATCAT+TGG + chr7_2:83208523-83208542 Msa1083000:CDS 40.0%
GAAGAGTTTCCAATGATAGG+AGG - chr7_2:83208535-83208554 None:intergenic 40.0%
GTGGAAGAGTTTCCAATGAT+AGG - chr7_2:83208538-83208557 None:intergenic 40.0%
!! TTACCAAAAGAGGTTGGTGT+TGG - chr7_2:83208565-83208584 None:intergenic 40.0%
! TTCTGGTTACCAAAAGAGGT+TGG - chr7_2:83208571-83208590 None:intergenic 40.0%
! TTTGGTAACCAGAATCAACC+TGG + chr7_2:83208577-83208596 Msa1083000:CDS 40.0%
TTGATGTTGTGAGCCAATCA+AGG - chr7_2:83208843-83208862 None:intergenic 40.0%
! TGATTGGCTCACAACATCAA+CGG + chr7_2:83208843-83208862 Msa1083000:three_prime_UTR 40.0%
CCCCACAATAGTATCAAAGT+TGG - chr7_2:83208927-83208946 None:intergenic 40.0%
AGAATACTCACTCACACATG+TGG + chr7_2:83208993-83209012 Msa1083000:three_prime_UTR 40.0%
CTCATTCAAGACGTAAGACA+AGG - chr7_2:83209186-83209205 None:intergenic 40.0%
GGACTGAAAATCAGTGTGAG+AGG - chr7_2:83207008-83207027 None:intergenic 45.0%
! AGTACCATTCTTGCTTTGGG+AGG - chr7_2:83207029-83207048 None:intergenic 45.0%
ATTGAAGCTGTGTCTGTGTC+TGG - chr7_2:83207632-83207651 None:intergenic 45.0%
ACAGAGTCAAGAGAAGCTAC+AGG + chr7_2:83207771-83207790 Msa1083000:CDS 45.0%
CCATCACCCATTTGTGGAAT+AGG - chr7_2:83208421-83208440 None:intergenic 45.0%
CCTATTCCACAAATGGGTGA+TGG + chr7_2:83208418-83208437 Msa1083000:CDS 45.0%
CATGTGTGGTGGTAATTGGT+TGG - chr7_2:83208488-83208507 None:intergenic 45.0%
TTGGGAATTGACATGTGTGG+TGG - chr7_2:83208499-83208518 None:intergenic 45.0%
GCATTGGGAATTGACATGTG+TGG - chr7_2:83208502-83208521 None:intergenic 45.0%
! GGAGGAATGAAAGGTGCATT+GGG - chr7_2:83208517-83208536 None:intergenic 45.0%
! AGGAGGAATGAAAGGTGCAT+TGG - chr7_2:83208518-83208537 None:intergenic 45.0%
!! AAAAGAGGTTGGTGTTGGTG+TGG - chr7_2:83208560-83208579 None:intergenic 45.0%
! ACACCAACACCAACCTCTTT+TGG + chr7_2:83208559-83208578 Msa1083000:CDS 45.0%
GTAACCAGAATCAACCTGGA+AGG + chr7_2:83208581-83208600 Msa1083000:CDS 45.0%
!! ATGTCCTTCCAGGTTGATTC+TGG - chr7_2:83208588-83208607 None:intergenic 45.0%
AATCAACCTGGAAGGACATG+TGG + chr7_2:83208589-83208608 Msa1083000:CDS 45.0%
GTTGTGAGCCAATCAAGGAA+AGG - chr7_2:83208838-83208857 None:intergenic 45.0%
ATACTATTGTGGGGTTGCGA+GGG + chr7_2:83208933-83208952 Msa1083000:three_prime_UTR 45.0%
AGGGAAGCCTAAAAGAGTGA+AGG + chr7_2:83208952-83208971 Msa1083000:three_prime_UTR 45.0%
GGACTGAAAATCAGTGTGAG+AGG - chr7_2:83207008-83207027 None:intergenic 45.0%
! AGTACCATTCTTGCTTTGGG+AGG - chr7_2:83207029-83207048 None:intergenic 45.0%
ATTGAAGCTGTGTCTGTGTC+TGG - chr7_2:83207632-83207651 None:intergenic 45.0%
ACAGAGTCAAGAGAAGCTAC+AGG + chr7_2:83207771-83207790 Msa1083000:CDS 45.0%
CCATCACCCATTTGTGGAAT+AGG - chr7_2:83208421-83208440 None:intergenic 45.0%
CCTATTCCACAAATGGGTGA+TGG + chr7_2:83208418-83208437 Msa1083000:CDS 45.0%
CATGTGTGGTGGTAATTGGT+TGG - chr7_2:83208488-83208507 None:intergenic 45.0%
TTGGGAATTGACATGTGTGG+TGG - chr7_2:83208499-83208518 None:intergenic 45.0%
GCATTGGGAATTGACATGTG+TGG - chr7_2:83208502-83208521 None:intergenic 45.0%
! GGAGGAATGAAAGGTGCATT+GGG - chr7_2:83208517-83208536 None:intergenic 45.0%
! AGGAGGAATGAAAGGTGCAT+TGG - chr7_2:83208518-83208537 None:intergenic 45.0%
!! AAAAGAGGTTGGTGTTGGTG+TGG - chr7_2:83208560-83208579 None:intergenic 45.0%
! ACACCAACACCAACCTCTTT+TGG + chr7_2:83208559-83208578 Msa1083000:CDS 45.0%
GTAACCAGAATCAACCTGGA+AGG + chr7_2:83208581-83208600 Msa1083000:CDS 45.0%
!! ATGTCCTTCCAGGTTGATTC+TGG - chr7_2:83208588-83208607 None:intergenic 45.0%
AATCAACCTGGAAGGACATG+TGG + chr7_2:83208589-83208608 Msa1083000:CDS 45.0%
GTTGTGAGCCAATCAAGGAA+AGG - chr7_2:83208838-83208857 None:intergenic 45.0%
ATACTATTGTGGGGTTGCGA+GGG + chr7_2:83208933-83208952 Msa1083000:three_prime_UTR 45.0%
AGGGAAGCCTAAAAGAGTGA+AGG + chr7_2:83208952-83208971 Msa1083000:three_prime_UTR 45.0%
CAGTCCTCCCAAAGCAAGAA+TGG + chr7_2:83207022-83207041 Msa1083000:five_prime_UTR 50.0%
! AGGTGCATTGGTATGGCTAG+AGG - chr7_2:83207374-83207393 None:intergenic 50.0%
GACCCTCAAGCTTCAGTTAC+AGG + chr7_2:83208163-83208182 Msa1083000:CDS 50.0%
GTGACACCATCACCCATTTG+TGG - chr7_2:83208427-83208446 None:intergenic 50.0%
GATACTATTGTGGGGTTGCG+AGG + chr7_2:83208932-83208951 Msa1083000:three_prime_UTR 50.0%
CAGTCCTCCCAAAGCAAGAA+TGG + chr7_2:83207022-83207041 Msa1083000:five_prime_UTR 50.0%
! AGGTGCATTGGTATGGCTAG+AGG - chr7_2:83207374-83207393 None:intergenic 50.0%
GACCCTCAAGCTTCAGTTAC+AGG + chr7_2:83208163-83208182 Msa1083000:CDS 50.0%
GTGACACCATCACCCATTTG+TGG - chr7_2:83208427-83208446 None:intergenic 50.0%
GATACTATTGTGGGGTTGCG+AGG + chr7_2:83208932-83208951 Msa1083000:three_prime_UTR 50.0%
!! AGAGGTTGGTGTTGGTGTGG+TGG - chr7_2:83208557-83208576 None:intergenic 55.0%
! GACTAGCCACATGTCCTTCC+AGG - chr7_2:83208598-83208617 None:intergenic 55.0%
!! AGAGGTTGGTGTTGGTGTGG+TGG - chr7_2:83208557-83208576 None:intergenic 55.0%
! GACTAGCCACATGTCCTTCC+AGG - chr7_2:83208598-83208617 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 83206848 83209300 83206848 ID=Msa1083000;Name=Msa1083000
chr7_2 mRNA 83206848 83209300 83206848 ID=Msa1083000-mRNA-1;Parent=Msa1083000;Name=Msa1083000-mRNA-1;_AED=0.06;_eAED=0.06;_QI=694|0.75|0.8|1|1|1|5|685|197
chr7_2 exon 83206848 83207546 83206848 ID=Msa1083000-mRNA-1:exon:21805;Parent=Msa1083000-mRNA-1
chr7_2 exon 83207694 83207823 83207694 ID=Msa1083000-mRNA-1:exon:21806;Parent=Msa1083000-mRNA-1
chr7_2 exon 83207932 83207997 83207932 ID=Msa1083000-mRNA-1:exon:21807;Parent=Msa1083000-mRNA-1
chr7_2 exon 83208119 83208184 83208119 ID=Msa1083000-mRNA-1:exon:21808;Parent=Msa1083000-mRNA-1
chr7_2 exon 83208289 83209300 83208289 ID=Msa1083000-mRNA-1:exon:21809;Parent=Msa1083000-mRNA-1
chr7_2 five_prime_UTR 83206848 83207541 83206848 ID=Msa1083000-mRNA-1:five_prime_utr;Parent=Msa1083000-mRNA-1
chr7_2 CDS 83207542 83207546 83207542 ID=Msa1083000-mRNA-1:cds;Parent=Msa1083000-mRNA-1
chr7_2 CDS 83207694 83207823 83207694 ID=Msa1083000-mRNA-1:cds;Parent=Msa1083000-mRNA-1
chr7_2 CDS 83207932 83207997 83207932 ID=Msa1083000-mRNA-1:cds;Parent=Msa1083000-mRNA-1
chr7_2 CDS 83208119 83208184 83208119 ID=Msa1083000-mRNA-1:cds;Parent=Msa1083000-mRNA-1
chr7_2 CDS 83208289 83208615 83208289 ID=Msa1083000-mRNA-1:cds;Parent=Msa1083000-mRNA-1
chr7_2 three_prime_UTR 83208616 83209300 83208616 ID=Msa1083000-mRNA-1:three_prime_utr;Parent=Msa1083000-mRNA-1
Gene Sequence

>Msa1083000

ATGATCTTGATTGATTTGATGTTGCAGAATGATGAAGAAACACAAGAAAATACGGTGAAAGAAAAGCCAGCTCATAATGGAAACAGAGTCAAGAGAAGCTACAGGAATGCAAAAATTCATAATTTATCTGAAAGGAAGAGAAGAGATAAAATTAATGAGAAAATACGTGCATTGAAAGAGCTCATACCAAATTGCAATAAGATGGACAAAGCTTCAATGCTTGACGATGCAATCGATTATCTTAAGACCCTCAAGCTTCAGTTACAGATTATGTCAATGGGAAGAGCACTTTGTATGCCAGTTAATCATTTTATGATGTTACCCGCACATCATATGAACATGAATATGAATATGAATGCACAACATTTGATGGGTTTCAGGCCACAAATACAGTTTCCTATTCCACAAATGGGTGATGGTGTCACAAACAATAACAACGACAGAGTTCAGATGTTTGGTTTCTCCAACCAATTACCACCACACATGTCAATTCCCAATGCACCTTTCATTCCTCCTATCATTGGAAACTCTTCCACCACACCAACACCAACCTCTTTTGGTAACCAGAATCAACCTGGAAGGACATGTGGCTAG
Protein sequence

>Msa1083000

MILIDLMLQNDEETQENTVKEKPAHNGNRVKRSYRNAKIHNLSERKRRDKINEKIRALKELIPNCNKMDKASMLDDAIDYLKTLKLQLQIMSMGRALCMPVNHFMMLPAHHMNMNMNMNAQHLMGFRPQIQFPIPQMGDGVTNNNNDRVQMFGFSNQLPPHMSIPNAPFIPPIIGNSSTTPTPTSFGNQNQPGRTCG*