AlfalfaGEDB | Msa1083000

M. sativa cultivar zhongmu-4 / Msa1083000

KEGG: K12126
GO: -
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1083000	XP_003626080.1	92.147	191	12	2	10	197	183	373	1.52e-111	333

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1083000	sp\|Q0JNI9\|PIL15_ORYSJ	60.000	100	34	2	9	108	361	454	3.02e-31	122

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1083000	G7KUN6	92.147	191	12	2	10	197	183	373	7.28e-112	333

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TFs/TRs:

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Gene ID	Type	Classification
Msa1083000	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0526970	Msa1083000	0.859864	3.077951e-63	-8.615850e-47
Msa1040550	Msa1083000	0.911580	5.175960e-83	-8.615850e-47
Msa1083000	Msa1127740	0.852950	3.297710e-61	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1083000	MtrunA17_Chr7g0270871	92.147	191	12	2	10	197	183	373	1.40e-115	333
Msa1083000	MtrunA17_Chr1g0193321	56.034	116	44	2	11	126	444	552	3.25e-32	122
Msa1083000	MtrunA17_Chr1g0182791	65.333	75	26	0	20	94	308	382	8.23e-28	109
Msa1083000	MtrunA17_Chr3g0095391	45.455	121	57	4	1	118	282	396	1.12e-24	100
Msa1083000	MtrunA17_Chr7g0271251	49.254	134	52	5	12	137	413	538	1.14e-24	100
Msa1083000	MtrunA17_Chr7g0262691	64.000	75	20	2	26	94	250	323	2.30e-23	96.3
Msa1083000	MtrunA17_Chr1g0153241	36.082	194	84	7	9	186	67	236	4.73e-22	90.5
Msa1083000	MtrunA17_Chr5g0402031	56.716	67	29	0	38	104	114	180	7.09e-20	85.5
Msa1083000	MtrunA17_Chr7g0231461	51.250	80	35	2	15	91	281	359	7.92e-17	77.8
Msa1083000	MtrunA17_Chr4g0074161	55.357	56	25	0	40	95	217	272	1.21e-16	77.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1083000	AT1G09530.3	59.184	98	38	2	4	100	312	408	1.37e-29	114
Msa1083000	AT1G09530.2	59.184	98	38	2	4	100	312	408	1.37e-29	114
Msa1083000	AT1G09530.5	59.184	98	38	2	4	100	312	408	1.37e-29	114
Msa1083000	AT1G09530.1	59.184	98	38	2	4	100	312	408	1.37e-29	114
Msa1083000	AT1G09530.4	59.184	98	38	2	4	100	312	408	1.37e-29	114
Msa1083000	AT1G09530.6	59.184	98	38	2	4	100	312	408	1.37e-29	114
Msa1083000	AT2G20180.7	41.875	160	88	2	12	171	190	344	1.26e-28	110
Msa1083000	AT2G20180.1	41.875	160	88	2	12	171	190	344	1.26e-28	110
Msa1083000	AT2G20180.5	41.875	160	88	2	12	171	190	344	1.26e-28	110
Msa1083000	AT2G20180.4	41.875	160	88	2	12	171	261	415	4.01e-28	110

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Find 110 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGACATTTGATATGT+TGG	0.414165	7_2:+83208695	Msa1083000:three_prime_UTR
AAAAGAGGTTGGTGTTGGTG+TGG	0.666327	7_2:-83208557	None:intergenic
AAACAACGTACACAAACTTT+AGG	0.416300	7_2:+83206891	Msa1083000:five_prime_UTR
AAAGAAAAGCCAGCTCATAA+TGG	0.458159	7_2:+83207746	Msa1083000:CDS
AAAGAGACATTTGATATGTT+GGG	0.434907	7_2:+83208696	Msa1083000:three_prime_UTR
AAATTCATAATTTATCTGAA+AGG	0.542829	7_2:+83207801	Msa1083000:CDS
AACATATAAGTGAGCGGAAA+AGG	0.400492	7_2:-83209030	None:intergenic
AACATCATAAAATGATTAAC+TGG	0.360190	7_2:-83208319	None:intergenic
AACGACAGAGTTCAGATGTT+TGG	0.380475	7_2:+83208457	Msa1083000:CDS
AATCAACCTGGAAGGACATG+TGG	0.668906	7_2:+83208589	Msa1083000:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAACGTACACAAACTTT+AGG	+	chr7_2:83206891-83206910	Msa1083000:five_prime_UTR	30.0%
CATGTTGCTAATGAAGTAAA+TGG	-	chr7_2:83206939-83206958	None:intergenic	30.0%
GGGTGTGAATATCAAAAAAA+TGG	+	chr7_2:83207139-83207158	Msa1083000:five_prime_UTR	30.0%
TTCATATGCAGAGTTTGATT+TGG	-	chr7_2:83207305-83207324	None:intergenic	30.0%
TTTCTCTTTCCTCTAATTCT+AGG	-	chr7_2:83207394-83207413	None:intergenic	30.0%
ACCAAAGTTTAGATCATTTG+AGG	-	chr7_2:83207476-83207495	None:intergenic	30.0%
ACTTAAATATGGAGAGTCAT+CGG	-	chr7_2:83207521-83207540	None:intergenic	30.0%
ATAATTTATCTGAAAGGGTG+AGG	+	chr7_2:83207807-83207826	Msa1083000:intron	30.0%
TCACATACCTTATTGCAATT+TGG	-	chr7_2:83207986-83208005	None:intergenic	30.0%
ATTCATGTTCATATGATGTG+CGG	-	chr7_2:83208347-83208366	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	83206848	83209300	83206848	ID=Msa1083000;Name=Msa1083000
chr7_2	mRNA	83206848	83209300	83206848	ID=Msa1083000-mRNA-1;Parent=Msa1083000;Name=Msa1083000-mRNA-1;_AED=0.06;_eAED=0.06;_QI=694\|0.75\|0.8\|1\|1\|1\|5\|685\|197
chr7_2	exon	83206848	83207546	83206848	ID=Msa1083000-mRNA-1:exon:21805;Parent=Msa1083000-mRNA-1
chr7_2	exon	83207694	83207823	83207694	ID=Msa1083000-mRNA-1:exon:21806;Parent=Msa1083000-mRNA-1
chr7_2	exon	83207932	83207997	83207932	ID=Msa1083000-mRNA-1:exon:21807;Parent=Msa1083000-mRNA-1
chr7_2	exon	83208119	83208184	83208119	ID=Msa1083000-mRNA-1:exon:21808;Parent=Msa1083000-mRNA-1
chr7_2	exon	83208289	83209300	83208289	ID=Msa1083000-mRNA-1:exon:21809;Parent=Msa1083000-mRNA-1
chr7_2	five_prime_UTR	83206848	83207541	83206848	ID=Msa1083000-mRNA-1:five_prime_utr;Parent=Msa1083000-mRNA-1
chr7_2	CDS	83207542	83207546	83207542	ID=Msa1083000-mRNA-1:cds;Parent=Msa1083000-mRNA-1
chr7_2	CDS	83207694	83207823	83207694	ID=Msa1083000-mRNA-1:cds;Parent=Msa1083000-mRNA-1
chr7_2	CDS	83207932	83207997	83207932	ID=Msa1083000-mRNA-1:cds;Parent=Msa1083000-mRNA-1
chr7_2	CDS	83208119	83208184	83208119	ID=Msa1083000-mRNA-1:cds;Parent=Msa1083000-mRNA-1
chr7_2	CDS	83208289	83208615	83208289	ID=Msa1083000-mRNA-1:cds;Parent=Msa1083000-mRNA-1
chr7_2	three_prime_UTR	83208616	83209300	83208616	ID=Msa1083000-mRNA-1:three_prime_utr;Parent=Msa1083000-mRNA-1

Gene Sequence

>Msa1083000

ATGATCTTGATTGATTTGATGTTGCAGAATGATGAAGAAACACAAGAAAATACGGTGAAAGAAAAGCCAGCTCATAATGGAAACAGAGTCAAGAGAAGCTACAGGAATGCAAAAATTCATAATTTATCTGAAAGGAAGAGAAGAGATAAAATTAATGAGAAAATACGTGCATTGAAAGAGCTCATACCAAATTGCAATAAGATGGACAAAGCTTCAATGCTTGACGATGCAATCGATTATCTTAAGACCCTCAAGCTTCAGTTACAGATTATGTCAATGGGAAGAGCACTTTGTATGCCAGTTAATCATTTTATGATGTTACCCGCACATCATATGAACATGAATATGAATATGAATGCACAACATTTGATGGGTTTCAGGCCACAAATACAGTTTCCTATTCCACAAATGGGTGATGGTGTCACAAACAATAACAACGACAGAGTTCAGATGTTTGGTTTCTCCAACCAATTACCACCACACATGTCAATTCCCAATGCACCTTTCATTCCTCCTATCATTGGAAACTCTTCCACCACACCAACACCAACCTCTTTTGGTAACCAGAATCAACCTGGAAGGACATGTGGCTAG

Protein sequence

>Msa1083000

MILIDLMLQNDEETQENTVKEKPAHNGNRVKRSYRNAKIHNLSERKRRDKINEKIRALKELIPNCNKMDKASMLDDAIDYLKTLKLQLQIMSMGRALCMPVNHFMMLPAHHMNMNMNMNAQHLMGFRPQIQFPIPQMGDGVTNNNNDRVQMFGFSNQLPPHMSIPNAPFIPPIIGNSSTTPTPTSFGNQNQPGRTCG*