AlfalfaGEDB | Msa1041050

M. sativa cultivar zhongmu-4 / Msa1041050

KEGG: K11430
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005911 GO:0006139 GO:0006325 GO:0006342 GO:0006349 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009653 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0017053 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0030054 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031519 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048316 GO:0048317 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048587 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0055044 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070734 GO:0071514 GO:0071704 GO:0071840 GO:0080050 GO:0080090 GO:0090568 GO:0090698 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:2000014 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2001141
PFAM: PF18264.4

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041050	AES82191.2	91.476	657	48	3	1	654	113	764	0.0	1193

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041050	sp\|Q9ZSM8\|EZA1_ARATH	59.008	383	144	5	278	653	479	855	3.91e-150	459
Msa1041050	sp\|Q9ZSM8\|EZA1_ARATH	45.992	237	114	4	15	245	86	314	1.05e-52	198

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041050	G7KSU0	91.476	657	48	3	1	654	113	764	0.0	1193

TFs/TRs:

Gene ID	Type	Classification
Msa1041050	TR	SET

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1041050	Msa1082420	0.949021	2.948851e-107	-8.615850e-47
Msa1041050	Msa1127210	0.923687	1.911430e-89	-8.615850e-47
Msa1041050	Msa1165450	0.933638	1.383010e-95	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041050	MtrunA17_Chr7g0270001	92.780	277	17	1	381	654	24	300	0.0	530
Msa1041050	MtrunA17_Chr7g0270011	75.141	354	29	4	1	354	1	295	0.0	516
Msa1041050	MtrunA17_Chr1g0194631	59.036	415	153	7	245	651	351	756	1.90e-161	482
Msa1041050	MtrunA17_Chr1g0194631	51.271	236	108	2	15	245	19	252	5.21e-69	239
Msa1041050	MtrunA17_Chr5g0401921	56.233	377	157	5	279	650	488	861	2.09e-133	412
Msa1041050	MtrunA17_Chr5g0401921	42.254	213	118	1	32	239	126	338	2.76e-47	179
Msa1041050	MtrunA17_Chr7g0235081	58.841	345	133	7	311	650	4	344	4.77e-129	384
Msa1041050	MtrunA17_Chr7g0235091	45.091	275	118	6	51	310	53	309	1.59e-68	226
Msa1041050	MtrunA17_Chr5g0405161	55.440	193	52	4	155	346	12	171	5.46e-57	192
Msa1041050	MtrunA17_Chr5g0405161	53.571	56	26	0	147	202	166	221	5.72e-11	63.2
Msa1041050	MtrunA17_Chr2g0297191	34.783	138	87	2	483	618	1014	1150	8.02e-20	94.7
Msa1041050	MtrunA17_Chr7g0221611	35.537	121	75	2	501	618	904	1024	2.03e-17	86.7
Msa1041050	MtrunA17_Chr8g0347071	33.613	119	77	2	503	619	808	926	2.23e-15	80.1
Msa1041050	MtrunA17_Chr1g0201621	38.532	109	65	1	513	619	95	203	2.95e-15	79.0
Msa1041050	MtrunA17_Chr1g0147121	34.711	121	75	3	502	619	892	1011	4.00e-15	79.3
Msa1041050	MtrunA17_Chr1g0201311	38.532	109	65	1	513	619	95	203	7.19e-15	77.8
Msa1041050	MtrunA17_Chr2g0305371	31.325	166	103	4	456	618	294	451	8.82e-15	77.4
Msa1041050	MtrunA17_Chr7g0275611	32.520	123	81	2	503	623	823	945	3.22e-14	76.6
Msa1041050	MtrunA17_Chr3g0126701	32.773	119	78	2	503	619	922	1040	3.27e-14	76.6
Msa1041050	MtrunA17_Chr3g0125251	32.576	132	87	1	489	618	1311	1442	2.87e-13	73.6
Msa1041050	MtrunA17_Chr1g0149611	29.921	127	80	2	508	625	369	495	8.40e-13	71.2
Msa1041050	MtrunA17_Chr1g0149581	28.125	128	86	1	498	619	1517	1644	1.10e-11	68.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041050	AT4G02020.1	59.008	383	144	5	278	653	479	855	3.97e-151	459
Msa1041050	AT4G02020.1	45.992	237	114	4	15	245	86	314	1.07e-53	198
Msa1041050	AT2G23380.2	51.422	422	170	6	258	650	258	673	3.69e-134	409
Msa1041050	AT2G23380.2	43.182	88	46	2	153	239	7	91	6.12e-15	79.0
Msa1041050	AT2G23380.1	51.422	422	170	6	258	650	485	900	1.05e-132	412
Msa1041050	AT2G23380.1	42.574	202	112	2	39	239	120	318	2.62e-42	164
Msa1041050	AT1G02580.1	41.463	574	292	11	52	618	124	660	4.10e-132	404
Msa1041050	AT4G02020.4	60.312	320	117	3	278	590	479	795	3.17e-129	400
Msa1041050	AT4G02020.4	45.992	237	114	4	15	245	86	314	5.96e-54	198
Msa1041050	AT4G02020.3	57.929	309	118	4	278	577	479	784	1.09e-113	360
Msa1041050	AT4G02020.3	45.992	237	114	4	15	245	86	314	4.51e-54	198
Msa1041050	AT4G02020.2	57.929	309	118	4	278	577	479	784	1.09e-113	360
Msa1041050	AT4G02020.2	45.992	237	114	4	15	245	86	314	4.51e-54	198
Msa1041050	AT1G02580.2	38.037	489	257	12	36	517	110	559	9.49e-88	285
Msa1041050	AT5G42400.7	36.567	134	82	2	487	618	1235	1367	6.41e-21	98.6
Msa1041050	AT5G42400.2	36.567	134	82	2	487	618	1235	1367	6.41e-21	98.6
Msa1041050	AT5G42400.8	36.567	134	82	2	487	618	1235	1367	6.41e-21	98.6
Msa1041050	AT5G42400.5	36.567	134	82	2	487	618	1235	1367	6.41e-21	98.6
Msa1041050	AT5G42400.4	36.567	134	82	2	487	618	1235	1367	6.41e-21	98.6
Msa1041050	AT5G42400.1	36.567	134	82	2	487	618	1235	1367	6.41e-21	98.6
Msa1041050	AT5G42400.3	36.567	134	82	2	487	618	1235	1367	6.41e-21	98.6
Msa1041050	AT5G42400.6	36.567	134	82	2	487	618	1235	1367	6.41e-21	98.6
Msa1041050	AT2G31650.1	36.364	121	74	2	501	618	897	1017	1.89e-18	90.5
Msa1041050	AT4G30860.1	39.024	123	71	2	499	618	323	444	2.76e-17	85.9
Msa1041050	AT1G05830.2	33.884	121	77	2	501	618	918	1038	2.16e-16	84.0
Msa1041050	AT1G05830.4	33.884	121	77	2	501	618	918	1038	2.16e-16	84.0
Msa1041050	AT1G05830.1	33.884	121	77	2	501	618	918	1038	2.16e-16	84.0
Msa1041050	AT1G05830.3	33.884	121	77	2	501	618	918	1038	2.16e-16	84.0
Msa1041050	AT1G76710.4	40.367	109	63	1	513	619	100	208	2.30e-16	82.8
Msa1041050	AT1G76710.3	40.367	109	63	1	513	619	100	208	2.65e-16	82.8
Msa1041050	AT1G76710.2	40.367	109	63	1	513	619	100	208	2.67e-16	82.8
Msa1041050	AT1G76710.1	40.367	109	63	1	513	619	100	208	2.67e-16	82.8
Msa1041050	AT4G27910.1	34.454	119	76	2	503	619	886	1004	5.95e-15	79.3
Msa1041050	AT5G53430.1	33.607	122	79	2	502	621	901	1022	1.11e-14	78.6
Msa1041050	AT1G77300.1	36.090	133	81	2	489	618	1013	1144	2.05e-13	74.7
Msa1041050	AT1G77300.2	36.090	133	81	2	489	618	1013	1144	2.90e-13	73.9
Msa1041050	AT3G61740.2	30.000	120	81	2	503	619	840	959	1.02e-12	72.0
Msa1041050	AT3G61740.1	30.000	120	81	2	503	619	876	995	1.44e-12	71.6
Msa1041050	AT3G59960.3	31.967	122	81	2	499	618	108	229	4.20e-12	67.8
Msa1041050	AT3G59960.2	31.967	122	81	2	499	618	108	229	4.20e-12	67.8
Msa1041050	AT3G59960.4	31.967	122	81	2	499	618	108	229	4.20e-12	67.8
Msa1041050	AT3G59960.1	31.967	122	81	2	499	618	108	229	6.41e-12	67.8

Find 117 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCGAATTGAACTCACTTTAA+TGG	0.116068	7_1:-78573912	None:intergenic
TGTATATTTGTCAGATTCTT+TGG	0.176923	7_1:+78577768	Msa1041050:intron
TGGATTCAGCTCGTTCATTT+TGG	0.198819	7_1:-78573892	None:intergenic
CTCTACGATCTTCATCATTT+TGG	0.203520	7_1:-78575493	None:intergenic
TTGTAGATTGTGTTTGTTAA+TGG	0.242431	7_1:+78578409	Msa1041050:intron
TAGAAATGTTTGGGAGAAAT+AGG	0.261350	7_1:+78576113	Msa1041050:CDS
CCGTATCATTCAAGTTAAAA+AGG	0.263836	7_1:-78578025	None:intergenic
TTGTATGAGGGGCTTAAATT+TGG	0.276488	7_1:+78575949	Msa1041050:CDS
TCAGCGAGAGCACTGTTTCT+TGG	0.281828	7_1:-78578593	None:intergenic
TCAACCCGATCATCAAGTTT+TGG	0.284315	7_1:+78574487	Msa1041050:CDS
CCTTCAGGTTCTTGCCAAAC+TGG	0.285004	7_1:-78575866	None:intergenic
CATGGATCCATGGACGAAAA+TGG	0.290421	7_1:+78576307	Msa1041050:CDS
CATGGTTCTCTGGGACCTTC+AGG	0.309857	7_1:-78575881	None:intergenic
TGGATGGGGAGCTTTCTTAA+AGG	0.310146	7_1:+78577808	Msa1041050:CDS
TCTTTCGGATTGGAAACTTT+TGG	0.327216	7_1:+78576066	Msa1041050:CDS
TTGAAGGGAATAGAAATGTT+TGG	0.329797	7_1:+78576103	Msa1041050:CDS
CTTGTGGACTTCCATCTAAA+TGG	0.334827	7_1:+78576835	Msa1041050:CDS
TGTAGATTGTGTTTGTTAAT+GGG	0.343535	7_1:+78578410	Msa1041050:intron
AGGAAAAGCTTCAGAAGAAT+AGG	0.345098	7_1:+78574336	Msa1041050:intron
GTCATCACCACATGGTTCTC+TGG	0.363244	7_1:-78575891	None:intergenic
TGGGCAAGGTCTGATGTTGC+TGG	0.366049	7_1:+78577788	Msa1041050:CDS
AGGTACCAGTTCAGAAATTC+AGG	0.366551	7_1:+78575285	Msa1041050:CDS
TACTAATAATACTTATTGTA+TGG	0.369662	7_1:+78573791	None:intergenic
AAGGTCTGATGTTGCTGGAT+GGG	0.377084	7_1:+78577793	Msa1041050:CDS
GTATATTTGTCAGATTCTTT+GGG	0.380194	7_1:+78577769	Msa1041050:intron
TGAAGGGAATAGAAATGTTT+GGG	0.387527	7_1:+78576104	Msa1041050:CDS
ACCATGGCTACATAAACTTC+TGG	0.394000	7_1:+78578522	Msa1041050:CDS
AAATGTATCCAAGACGTATA+TGG	0.398309	7_1:-78574575	None:intergenic
TGATATTACTAACATGGCCT+TGG	0.406456	7_1:-78574381	None:intergenic
TTGTGACATCTTTATTATGA+AGG	0.413196	7_1:-78575919	None:intergenic
TTTGACGAACAAGATACATT+TGG	0.417321	7_1:+78573856	Msa1041050:five_prime_UTR
TTGATGATCGGGTTGATGAT+TGG	0.418627	7_1:-78574480	None:intergenic
CAAGGTCTGATGTTGCTGGA+TGG	0.418842	7_1:+78577792	Msa1041050:CDS
TGTTGGATCATCATCTTCCT+TGG	0.421957	7_1:-78578554	None:intergenic
GGAGGAGTCTACTACTCTTT+CGG	0.427997	7_1:+78576051	Msa1041050:CDS
AGTTCGAAAAGCAACCAGTT+TGG	0.430460	7_1:+78575852	Msa1041050:intron
TCACAATTAGTAATTGTATG+AGG	0.430536	7_1:+78575936	Msa1041050:CDS
GGAAAAGCTTCAGAAGAATA+GGG	0.434496	7_1:+78574337	Msa1041050:intron
AGGTCTGATGTTGCTGGATG+GGG	0.436683	7_1:+78577794	Msa1041050:CDS
TCTCCCAAAACTTGATGATC+GGG	0.437642	7_1:-78574491	None:intergenic
TATGTCGAAATTGTTGGGTT+AGG	0.439250	7_1:+78577182	Msa1041050:CDS
TGATGATCGGGTTGATGATT+GGG	0.450857	7_1:-78574479	None:intergenic
CTCTCCCAAAACTTGATGAT+CGG	0.452457	7_1:-78574492	None:intergenic
CATTACCTGAATTTCTGAAC+TGG	0.453071	7_1:-78575290	None:intergenic
GCAAAGGAACACATTGAAGC+TGG	0.455412	7_1:+78578454	Msa1041050:CDS
CACTTGTGTGACTCAATAGA+AGG	0.458241	7_1:+78576019	Msa1041050:CDS
AAATGTATATTATGATCATC+AGG	0.462380	7_1:+78574818	Msa1041050:CDS
CAACAATTTCGACATACATC+AGG	0.464497	7_1:-78577175	None:intergenic
AGGGTGAAGACCGATTTATT+AGG	0.467728	7_1:+78574916	Msa1041050:CDS
AAATATTCTTCAAAATCTTG+TGG	0.468339	7_1:+78576819	Msa1041050:CDS
TCAGGATGCCAAGCATCAAC+AGG	0.472001	7_1:+78574546	Msa1041050:CDS
GGAAGTGTTGAGTATTGTTA+AGG	0.491359	7_1:+78575252	Msa1041050:CDS
ATCTTTGATTGTCCTTTGCA+CGG	0.496740	7_1:+78575719	Msa1041050:CDS
GCATCAAAAGCTAATTGCTA+TGG	0.496913	7_1:+78578293	Msa1041050:CDS
TTTGTCAATAGTTGTGGAGA+TGG	0.500177	7_1:+78577599	Msa1041050:intron
AAAACATGATGCTTCTTGTA+AGG	0.500417	7_1:+78577663	Msa1041050:CDS
CTACATAAACTTCTGGATGA+TGG	0.506909	7_1:+78578529	Msa1041050:CDS
ATGATCAAAAGTATCTAAAG+AGG	0.509607	7_1:-78575561	None:intergenic
CGTCTTGGATACATTTAGCC+AGG	0.511255	7_1:+78574582	Msa1041050:CDS
AGTCTACTACTCTTTCGGAT+TGG	0.511550	7_1:+78576056	Msa1041050:CDS
TTTGTCAGATTCTTTGGGCA+AGG	0.512971	7_1:+78577774	Msa1041050:intron
CACAATTAGTAATTGTATGA+GGG	0.514622	7_1:+78575937	Msa1041050:CDS
CAAAGGAACACATTGAAGCT+GGG	0.517669	7_1:+78578455	Msa1041050:CDS
GTAGATTGTGTTTGTTAATG+GGG	0.518073	7_1:+78578411	Msa1041050:intron
CTGATGTATGTCGAAATTGT+TGG	0.519505	7_1:+78577176	Msa1041050:CDS
GGCATCCTGATACTTCTCAC+AGG	0.523294	7_1:-78574533	None:intergenic
ATAATACTTATTGTATGGAT+AGG	0.529043	7_1:+78573796	Msa1041050:five_prime_UTR
TGATGTATGTCGAAATTGTT+GGG	0.532358	7_1:+78577177	Msa1041050:CDS
TCATCACCACATGGTTCTCT+GGG	0.539476	7_1:-78575890	None:intergenic
GGTTACCTCCATATACGTCT+TGG	0.539814	7_1:+78574567	Msa1041050:CDS
GAAAGAATATTTCCTCCACT+TGG	0.540932	7_1:-78574419	None:intergenic
GTCAATGCCACATGGATCCA+TGG	0.545867	7_1:+78576297	Msa1041050:CDS
TAGTTGTGGAGATGGTAACT+TGG	0.551130	7_1:+78577607	Msa1041050:intron
ACATGGACATTGCTTTCCAC+AGG	0.551199	7_1:-78576928	None:intergenic
AAAAGCTAATTGCTATGGAA+AGG	0.554769	7_1:+78578298	Msa1041050:CDS
TCTTCAAAGTCAACTTTCCA+AGG	0.557371	7_1:+78574364	Msa1041050:five_prime_UTR
TCTCTCGAAGCTGCAAAACA+TGG	0.560977	7_1:-78577145	None:intergenic
TCTTGTAAGGAAACAACAAA+AGG	0.562281	7_1:+78577676	Msa1041050:CDS
ATGAGATGACATCGAGGTCA+AGG	0.562748	7_1:+78576763	Msa1041050:CDS
AGTATTGTTAAGGATGTCAT+CGG	0.565880	7_1:+78575262	Msa1041050:CDS
AGTTGTGGAGATGGTAACTT+GGG	0.568538	7_1:+78577608	Msa1041050:intron
AGAAACAGTGCTCTCGCTGA+TGG	0.570720	7_1:+78578596	Msa1041050:CDS
ACTTCTGGATGATGGTTCCA+AGG	0.574557	7_1:+78578537	Msa1041050:CDS
TCCAGAAGTTTATGTAGCCA+TGG	0.577075	7_1:-78578523	None:intergenic
GGAGGTAACCTGTTGATGCT+TGG	0.585377	7_1:-78574554	None:intergenic
CATATAGAAGCTGATAAGCG+TGG	0.585855	7_1:+78577972	Msa1041050:CDS
ACAATTAGTAATTGTATGAG+GGG	0.586473	7_1:+78575938	Msa1041050:CDS
AATAGAAGGACAAGCTGAGG+AGG	0.588743	7_1:+78576033	Msa1041050:CDS
AGGACGGTATTTGATGAACA+TGG	0.591105	7_1:+78575220	Msa1041050:intron
CAAGAACTATTAAGAAGACA+TGG	0.596810	7_1:-78576945	None:intergenic
GTTAATGGGGATCATCGAGT+AGG	0.597741	7_1:+78578424	Msa1041050:CDS
AACAATTTCGACATACATCA+GGG	0.601740	7_1:-78577174	None:intergenic
TGAAGAGTCAAACGAGCACA+AGG	0.605193	7_1:+78574872	Msa1041050:CDS
GTATACACCTTGTGAATGTG+AGG	0.614412	7_1:+78576902	Msa1041050:CDS
GGAACACATTGAAGCTGGGG+AGG	0.615949	7_1:+78578459	Msa1041050:CDS
TCGAGTAGGAATATTTGCAA+AGG	0.624767	7_1:+78578438	Msa1041050:CDS
CTCAATAGAAGGACAAGCTG+AGG	0.630020	7_1:+78576030	Msa1041050:CDS
AAAGGAACACATTGAAGCTG+GGG	0.641785	7_1:+78578456	Msa1041050:CDS
CCAGTTTGGCAAGAACCTGA+AGG	0.643958	7_1:+78575866	Msa1041050:CDS
TGTGAATGTGAGGGAGCCTG+TGG	0.648105	7_1:+78576912	Msa1041050:CDS
GCTGAAGAGTCAATGCCACA+TGG	0.648318	7_1:+78576289	Msa1041050:CDS
AATGAATCACTACCAAGTGG+AGG	0.658347	7_1:+78574407	Msa1041050:CDS
CAGGCTCCCTCACATTCACA+AGG	0.660511	7_1:-78576909	None:intergenic
GTATATTATGATCATCAGGA+AGG	0.661006	7_1:+78574822	Msa1041050:CDS
TGTATCCAAGACGTATATGG+AGG	0.666836	7_1:-78574572	None:intergenic
TGATGAACATGGTTTAACTG+AGG	0.669808	7_1:+78575231	Msa1041050:CDS
AGAGTCGTCTCATCGTGGAG+AGG	0.678757	7_1:+78577631	Msa1041050:CDS
TATACACCTTGTGAATGTGA+GGG	0.684335	7_1:+78576903	Msa1041050:CDS
ATTGTTAAGGATGTCATCGG+AGG	0.690600	7_1:+78575265	Msa1041050:CDS
TTGGGAGAGTCGTCTCATCG+TGG	0.699122	7_1:+78577626	Msa1041050:CDS
AGGTAACAGTCATCACCACA+TGG	0.703610	7_1:-78575899	None:intergenic
TTGGGACTATAGAACTTACA+CGG	0.709896	7_1:-78574461	None:intergenic
ACGAAAATAGTCGACCACCA+TGG	0.710964	7_1:+78578506	Msa1041050:CDS
AGAAGTTTATGTAGCCATGG+TGG	0.711973	7_1:-78578520	None:intergenic
AGGACAATGAGATGACATCG+AGG	0.791829	7_1:+78576757	Msa1041050:intron
GAAGGTCCCAGAGAACCATG+TGG	0.793045	7_1:+78575884	Msa1041050:CDS
GGACTATAGAACTTACACGG+TGG	0.797366	7_1:-78574458	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTATTTTCCATTATAAATTG+AGG	+	chr7_1:78574000-78574019	Msa1041050:intron	15.0%
!!!	TATTTTCCATTATAAATTGA+GGG	+	chr7_1:78574001-78574020	Msa1041050:intron	15.0%
!!!	ATTTTTTGATATTACTAACA+TGG	-	chr7_1:78574390-78574409	None:intergenic	15.0%
!!!	TTTTGATTTACCTAATAAAT+CGG	-	chr7_1:78574929-78574948	None:intergenic	15.0%
!!	TTGTGACTATTTAATATATT+AGG	+	chr7_1:78575200-78575219	Msa1041050:intron	15.0%
!!	ATATAAAAATATCAAGGAAA+AGG	+	chr7_1:78575469-78575488	Msa1041050:CDS	15.0%
!!	AATTAATTATTCATTGATAC+TGG	-	chr7_1:78575816-78575835	None:intergenic	15.0%
!!!	TCAATGAATAATTAATTTGA+TGG	+	chr7_1:78575819-78575838	Msa1041050:intron	15.0%
!!!	TAACCATTTTTCTAATATTT+TGG	+	chr7_1:78576174-78576193	Msa1041050:intron	15.0%
!!!	ATGTTATTTTAGTAAACTAT+TGG	+	chr7_1:78576537-78576556	Msa1041050:intron	15.0%
!!!	TGTTATTTTAGTAAACTATT+GGG	+	chr7_1:78576538-78576557	Msa1041050:intron	15.0%
!!	ATAATTAATTCAATTCTACA+AGG	-	chr7_1:78577448-78577467	None:intergenic	15.0%
!!!	TAATATAATGCTTTTAACTA+TGG	+	chr7_1:78577573-78577592	Msa1041050:intron	15.0%
!!	ACAAATATACAAATCAATTA+AGG	-	chr7_1:78577759-78577778	None:intergenic	15.0%
!!	ATAATACTTATTGTATGGAT+AGG	+	chr7_1:78573796-78573815	Msa1041050:five_prime_UTR	20.0%
!!!	ATTTTCCATTATAAATTGAG+GGG	+	chr7_1:78574002-78574021	Msa1041050:intron	20.0%
!!!	AGTTAATTAAGTTGTTTTTG+AGG	+	chr7_1:78574057-78574076	Msa1041050:intron	20.0%
!!	AAATGTATATTATGATCATC+AGG	+	chr7_1:78574818-78574837	Msa1041050:CDS	20.0%
!!!	ATATGTAATACATATTTTGC+TGG	+	chr7_1:78575091-78575110	Msa1041050:intron	20.0%
!!!	CACAATAAGTATAAACTTTT+CGG	-	chr7_1:78575121-78575140	None:intergenic	20.0%
!!	GACTATTTAATATATTAGGA+CGG	+	chr7_1:78575204-78575223	Msa1041050:intron	20.0%
!!	TCATATTATAGACAACAATA+TGG	-	chr7_1:78575654-78575673	None:intergenic	20.0%
!!	CAATGAAGAAAAAAATGATA+TGG	+	chr7_1:78575979-78575998	Msa1041050:CDS	20.0%
!!	GAAAAAGAATTATACTTGAA+GGG	+	chr7_1:78576088-78576107	Msa1041050:CDS	20.0%
!!	AAGCCAAAATATTAGAAAAA+TGG	-	chr7_1:78576180-78576199	None:intergenic	20.0%
!!!	GTTATTTTAGTAAACTATTG+GGG	+	chr7_1:78576539-78576558	Msa1041050:intron	20.0%
!!!	TTATTTTAGTAAACTATTGG+GGG	+	chr7_1:78576540-78576559	Msa1041050:intron	20.0%
!!	AAATATTCTTCAAAATCTTG+TGG	+	chr7_1:78576819-78576838	Msa1041050:CDS	20.0%
!!!	TAAGTCATAAGTAATGTTTT+TGG	+	chr7_1:78577406-78577425	Msa1041050:intron	20.0%
!!!	AAAAATCATTTTTGTTTGCT+GGG	-	chr7_1:78577923-78577942	None:intergenic	20.0%
!!!	AAAAAATCATTTTTGTTTGC+TGG	-	chr7_1:78577924-78577943	None:intergenic	20.0%
!!!	GCAAACAAAAATGATTTTTT+AGG	+	chr7_1:78577924-78577943	Msa1041050:CDS	20.0%
!!	ATTCATAGTATAGGTTAATA+TGG	-	chr7_1:78578214-78578233	None:intergenic	20.0%
!!	ACTGAAAAAATTCATAGTAT+AGG	-	chr7_1:78578223-78578242	None:intergenic	20.0%
!!	TTTTCCATTATAAATTGAGG+GGG	+	chr7_1:78574003-78574022	Msa1041050:intron	25.0%
!!!	CAGTTCCTCTTAATTTTTTA+TGG	+	chr7_1:78574094-78574113	Msa1041050:intron	25.0%
!	CAAGTCCATAAAAAATTAAG+AGG	-	chr7_1:78574102-78574121	None:intergenic	25.0%
!!!	CTCTTAATTTTTTATGGACT+TGG	+	chr7_1:78574100-78574119	Msa1041050:intron	25.0%
!!!	CTTTTACGTAATTGTTGTTT+TGG	+	chr7_1:78574199-78574218	Msa1041050:intron	25.0%
!	GATAATTAAGATTGACTACA+TGG	-	chr7_1:78574309-78574328	None:intergenic	25.0%
!	AATCTTAATTATCTTTCCTC+AGG	+	chr7_1:78574316-78574335	Msa1041050:intron	25.0%
!	CCTAAAAAATTTCATGTAAG+AGG	-	chr7_1:78574646-78574665	None:intergenic	25.0%
!!!	CCTCTTACATGAAATTTTTT+AGG	+	chr7_1:78574643-78574662	Msa1041050:intron	25.0%
!	AGATGACACAAATTTAACAT+AGG	-	chr7_1:78574720-78574739	None:intergenic	25.0%
!!	AATAAGTATAAACTTTTCGG+AGG	-	chr7_1:78575118-78575137	None:intergenic	25.0%
!	CAAGATAATATGTTTAGTGA+AGG	-	chr7_1:78575183-78575202	None:intergenic	25.0%
!!!	ATGATCAAAAGTATCTAAAG+AGG	-	chr7_1:78575564-78575583	None:intergenic	25.0%
!	TATTATAGACAACAATATGG+TGG	-	chr7_1:78575651-78575670	None:intergenic	25.0%
!	AAGAAATGAATGAAGAAACA+TGG	-	chr7_1:78575778-78575797	None:intergenic	25.0%
!	TTGTGACATCTTTATTATGA+AGG	-	chr7_1:78575922-78575941	None:intergenic	25.0%
!	TCACAATTAGTAATTGTATG+AGG	+	chr7_1:78575936-78575955	Msa1041050:CDS	25.0%
!	CACAATTAGTAATTGTATGA+GGG	+	chr7_1:78575937-78575956	Msa1041050:CDS	25.0%
!	ACAATTAGTAATTGTATGAG+GGG	+	chr7_1:78575938-78575957	Msa1041050:CDS	25.0%
!	TGAAGAAAAAAATGATATGG+AGG	+	chr7_1:78575982-78576001	Msa1041050:CDS	25.0%
!	GGAAAAAGAATTATACTTGA+AGG	+	chr7_1:78576087-78576106	Msa1041050:CDS	25.0%
!!!	ATCGTCAAATTGTTTTTGAA+TGG	+	chr7_1:78576723-78576742	Msa1041050:intron	25.0%
!!!	TCGTCAAATTGTTTTTGAAT+GGG	+	chr7_1:78576724-78576743	Msa1041050:intron	25.0%
!!	TTAATTATGTTCCTTTTCGA+TGG	+	chr7_1:78577002-78577021	Msa1041050:intron	25.0%
!!	ATAATTGTTTTCCATCGAAA+AGG	-	chr7_1:78577016-78577035	None:intergenic	25.0%
!	CCAGAGAAAATAATACATAT+AGG	-	chr7_1:78577241-78577260	None:intergenic	25.0%
!!	CCTATATGTATTATTTTCTC+TGG	+	chr7_1:78577238-78577257	Msa1041050:intron	25.0%
!!	TGTATTATTTTCTCTGGTAA+AGG	+	chr7_1:78577244-78577263	Msa1041050:intron	25.0%
!!	GTATTATTTTCTCTGGTAAA+GGG	+	chr7_1:78577245-78577264	Msa1041050:intron	25.0%
!!	TATTATTTTCTCTGGTAAAG+GGG	+	chr7_1:78577246-78577265	Msa1041050:intron	25.0%
!	TAGTACTTAATTCAAGTACA+AGG	-	chr7_1:78577335-78577354	None:intergenic	25.0%
!	TGTATATTTGTCAGATTCTT+TGG	+	chr7_1:78577768-78577787	Msa1041050:intron	25.0%
!	GTATATTTGTCAGATTCTTT+GGG	+	chr7_1:78577769-78577788	Msa1041050:intron	25.0%
!!!	AAAATCATTTTTGTTTGCTG+GGG	-	chr7_1:78577922-78577941	None:intergenic	25.0%
!!!	CCTTTTTAACTTGAATGATA+CGG	+	chr7_1:78578025-78578044	Msa1041050:CDS	25.0%
!	ATTGAATTGCAAATAATGTG+TGG	+	chr7_1:78578382-78578401	Msa1041050:intron	25.0%
!!	TTGTAGATTGTGTTTGTTAA+TGG	+	chr7_1:78578409-78578428	Msa1041050:intron	25.0%
!!	TGTAGATTGTGTTTGTTAAT+GGG	+	chr7_1:78578410-78578429	Msa1041050:intron	25.0%
	TTGTATGGATAGGAAAAACA+TGG	+	chr7_1:78573806-78573825	Msa1041050:five_prime_UTR	30.0%
	TTTGACGAACAAGATACATT+TGG	+	chr7_1:78573856-78573875	Msa1041050:five_prime_UTR	30.0%
	CCATTAAAGTGAGTTCAATT+CGG	+	chr7_1:78573912-78573931	Msa1041050:intron	30.0%
	ATTTCCCCCTCAATTTATAA+TGG	-	chr7_1:78574010-78574029	None:intergenic	30.0%
	AAAAGAGAATGCTTCATGTA+AGG	-	chr7_1:78574184-78574203	None:intergenic	30.0%
!!!	TTACGTAATTGTTGTTTTGG+TGG	+	chr7_1:78574202-78574221	Msa1041050:intron	30.0%
	AAAAATGAATCACTACCAAG+TGG	+	chr7_1:78574404-78574423	Msa1041050:CDS	30.0%
	AAATGTATCCAAGACGTATA+TGG	-	chr7_1:78574578-78574597	None:intergenic	30.0%
	ATTTATAAGTCAAACACACC+TGG	-	chr7_1:78574603-78574622	None:intergenic	30.0%
	GTATATTATGATCATCAGGA+AGG	+	chr7_1:78574822-78574841	Msa1041050:CDS	30.0%
!	AGTTGAACGTAAATTTTCTC+AGG	+	chr7_1:78574896-78574915	Msa1041050:CDS	30.0%
!	GTTGAACGTAAATTTTCTCA+GGG	+	chr7_1:78574897-78574916	Msa1041050:CDS	30.0%
	GAATTTACATCACTAACAAC+AGG	-	chr7_1:78575051-78575070	None:intergenic	30.0%
	AGTATTGTTAAGGATGTCAT+CGG	+	chr7_1:78575262-78575281	Msa1041050:CDS	30.0%
	TGTTCTCAATCAAAATATGC+AGG	+	chr7_1:78575442-78575461	Msa1041050:intron	30.0%
	GGAGCGATATAAAAATATCA+AGG	+	chr7_1:78575463-78575482	Msa1041050:intron	30.0%
!	ACAATATGGTGGTGAAAAAA+AGG	-	chr7_1:78575640-78575659	None:intergenic	30.0%
	TTGAAGGGAATAGAAATGTT+TGG	+	chr7_1:78576103-78576122	Msa1041050:CDS	30.0%
	TGAAGGGAATAGAAATGTTT+GGG	+	chr7_1:78576104-78576123	Msa1041050:CDS	30.0%
	TAGAAATGTTTGGGAGAAAT+AGG	+	chr7_1:78576113-78576132	Msa1041050:CDS	30.0%
!	TTTTATGATGAAGACTTGCA+AGG	+	chr7_1:78576246-78576265	Msa1041050:CDS	30.0%
	ATTTGACGATCTTTGAATAG+TGG	-	chr7_1:78576713-78576732	None:intergenic	30.0%
!!!	TTTGAATGGGTTATTTTGCT+AGG	+	chr7_1:78576737-78576756	Msa1041050:intron	30.0%
!	CTTCTTCTTTTCCATTTAGA+TGG	-	chr7_1:78576849-78576868	None:intergenic	30.0%
	TACTGATGAGAAAAACAAAC+TGG	+	chr7_1:78576872-78576891	Msa1041050:CDS	30.0%
	CAAGAACTATTAAGAAGACA+TGG	-	chr7_1:78576948-78576967	None:intergenic	30.0%
!	TCTTGCTGTGAAAAATATTG+CGG	+	chr7_1:78576963-78576982	Msa1041050:CDS	30.0%
!	CAGTTATATTTTCTACCTTC+AGG	+	chr7_1:78577050-78577069	Msa1041050:intron	30.0%
	AAGCTCTGTAAAAATCGATT+TGG	+	chr7_1:78577079-78577098	Msa1041050:CDS	30.0%
	AACAATTTCGACATACATCA+GGG	-	chr7_1:78577177-78577196	None:intergenic	30.0%
	TGATGTATGTCGAAATTGTT+GGG	+	chr7_1:78577177-78577196	Msa1041050:CDS	30.0%
!	ATTATTTTCTCTGGTAAAGG+GGG	+	chr7_1:78577247-78577266	Msa1041050:intron	30.0%
!!	AAACCCTCTCTATTATTTTG+TGG	+	chr7_1:78577296-78577315	Msa1041050:intron	30.0%
!	ATAGAGAGTACAATTTGCTT+AGG	-	chr7_1:78577503-78577522	None:intergenic	30.0%
	TATTAAATCATTTCAGCCAG+AGG	+	chr7_1:78577529-78577548	Msa1041050:intron	30.0%
!!	AATTTAGTTTGAATCACCTC+TGG	-	chr7_1:78577548-78577567	None:intergenic	30.0%
	AAAACATGATGCTTCTTGTA+AGG	+	chr7_1:78577663-78577682	Msa1041050:CDS	30.0%
	TCTTGTAAGGAAACAACAAA+AGG	+	chr7_1:78577676-78577695	Msa1041050:CDS	30.0%
	GACAATTGTTAATACACTTC+AGG	+	chr7_1:78577896-78577915	Msa1041050:intron	30.0%
!	CCGTATCATTCAAGTTAAAA+AGG	-	chr7_1:78578028-78578047	None:intergenic	30.0%
	CATAGAAGATATGCTAGAAT+AGG	-	chr7_1:78578090-78578109	None:intergenic	30.0%
	CTATTCTAGCATATCTTCTA+TGG	+	chr7_1:78578088-78578107	Msa1041050:intron	30.0%
	AAAAGCTAATTGCTATGGAA+AGG	+	chr7_1:78578298-78578317	Msa1041050:CDS	30.0%
!	GTAGATTGTGTTTGTTAATG+GGG	+	chr7_1:78578411-78578430	Msa1041050:intron	30.0%
	TATGGATAGGAAAAACATGG+AGG	+	chr7_1:78573809-78573828	Msa1041050:five_prime_UTR	35.0%
	ATGGATAGGAAAAACATGGA+GGG	+	chr7_1:78573810-78573829	Msa1041050:five_prime_UTR	35.0%
	CCGAATTGAACTCACTTTAA+TGG	-	chr7_1:78573915-78573934	None:intergenic	35.0%
	TGTCAAAGTTGAGAACAAAG+TGG	+	chr7_1:78574127-78574146	Msa1041050:intron	35.0%
	TTGAGAACAAAGTGGCAATT+AGG	+	chr7_1:78574135-78574154	Msa1041050:intron	35.0%
	TGAGAACAAAGTGGCAATTA+GGG	+	chr7_1:78574136-78574155	Msa1041050:intron	35.0%
	CTTGCTCATAGAAATATGCA+GGG	-	chr7_1:78574286-78574305	None:intergenic	35.0%
	AGGAAAAGCTTCAGAAGAAT+AGG	+	chr7_1:78574336-78574355	Msa1041050:intron	35.0%
	GGAAAAGCTTCAGAAGAATA+GGG	+	chr7_1:78574337-78574356	Msa1041050:intron	35.0%
	TCTTCAAAGTCAACTTTCCA+AGG	+	chr7_1:78574364-78574383	Msa1041050:five_prime_UTR	35.0%
	TGATATTACTAACATGGCCT+TGG	-	chr7_1:78574384-78574403	None:intergenic	35.0%
	GAAAGAATATTTCCTCCACT+TGG	-	chr7_1:78574422-78574441	None:intergenic	35.0%
	TTGGGACTATAGAACTTACA+CGG	-	chr7_1:78574464-78574483	None:intergenic	35.0%
!!!	TTCTCACAGGTTTTTTGCTA+CGG	-	chr7_1:78574523-78574542	None:intergenic	35.0%
!!	AAAAACCTGTGAGAAGTATC+AGG	+	chr7_1:78574528-78574547	Msa1041050:CDS	35.0%
	TGATGAACATGGTTTAACTG+AGG	+	chr7_1:78575231-78575250	Msa1041050:CDS	35.0%
!!	GGAAGTGTTGAGTATTGTTA+AGG	+	chr7_1:78575252-78575271	Msa1041050:CDS	35.0%
	CATTACCTGAATTTCTGAAC+TGG	-	chr7_1:78575293-78575312	None:intergenic	35.0%
!	GAGCAGCTAATTTTATGTCA+TGG	+	chr7_1:78575414-78575433	Msa1041050:intron	35.0%
!	CTCTACGATCTTCATCATTT+TGG	-	chr7_1:78575496-78575515	None:intergenic	35.0%
	ATCTTTGATTGTCCTTTGCA+CGG	+	chr7_1:78575719-78575738	Msa1041050:CDS	35.0%
	AAGAAACATGGTTGCTTACT+GGG	-	chr7_1:78575766-78575785	None:intergenic	35.0%
	TTGTATGAGGGGCTTAAATT+TGG	+	chr7_1:78575949-78575968	Msa1041050:CDS	35.0%
!!	TCTTTCGGATTGGAAACTTT+TGG	+	chr7_1:78576066-78576085	Msa1041050:CDS	35.0%
	TTTAGTAAACTATTGGGGGA+TGG	+	chr7_1:78576544-78576563	Msa1041050:intron	35.0%
	TTAGTAAACTATTGGGGGAT+GGG	+	chr7_1:78576545-78576564	Msa1041050:intron	35.0%
	TCTGCAAAGTCATATGACTT+TGG	+	chr7_1:78576632-78576651	Msa1041050:intron	35.0%
	TATACACCTTGTGAATGTGA+GGG	+	chr7_1:78576903-78576922	Msa1041050:CDS	35.0%
!	CTTGCTGTGAAAAATATTGC+GGG	+	chr7_1:78576964-78576983	Msa1041050:CDS	35.0%
!!	CTCTGTAAAAATCGATTTGG+AGG	+	chr7_1:78577082-78577101	Msa1041050:CDS	35.0%
	CAACAATTTCGACATACATC+AGG	-	chr7_1:78577178-78577197	None:intergenic	35.0%
	CTGATGTATGTCGAAATTGT+TGG	+	chr7_1:78577176-78577195	Msa1041050:CDS	35.0%
	TATGTCGAAATTGTTGGGTT+AGG	+	chr7_1:78577182-78577201	Msa1041050:CDS	35.0%
	AAGTACAAGGAAAACTCTTC+CGG	-	chr7_1:78577322-78577341	None:intergenic	35.0%
!	TGGCATTTTGTCAATAGTTG+TGG	+	chr7_1:78577593-78577612	Msa1041050:intron	35.0%
	TTTGTCAATAGTTGTGGAGA+TGG	+	chr7_1:78577599-78577618	Msa1041050:intron	35.0%
!!!	GATTTTTTAGGAGAGTACAC+TGG	+	chr7_1:78577936-78577955	Msa1041050:CDS	35.0%
	GCATCAAAAGCTAATTGCTA+TGG	+	chr7_1:78578293-78578312	Msa1041050:CDS	35.0%
	TCGAGTAGGAATATTTGCAA+AGG	+	chr7_1:78578438-78578457	Msa1041050:CDS	35.0%
!	GAGGAGCTTTTCTTTGATTA+CGG	+	chr7_1:78578478-78578497	Msa1041050:CDS	35.0%
!	AGGAGCTTTTCTTTGATTAC+GGG	+	chr7_1:78578479-78578498	Msa1041050:CDS	35.0%
	CTACATAAACTTCTGGATGA+TGG	+	chr7_1:78578529-78578548	Msa1041050:CDS	35.0%
!	GATGATCCAACATTTTCTCA+AGG	+	chr7_1:78578565-78578584	Msa1041050:CDS	35.0%
!	GCTTTTCCTTGAGAAAATGT+TGG	-	chr7_1:78578574-78578593	None:intergenic	35.0%
	TGGATAGGAAAAACATGGAG+GGG	+	chr7_1:78573811-78573830	Msa1041050:five_prime_UTR	40.0%
!	TGGATTCAGCTCGTTCATTT+TGG	-	chr7_1:78573895-78573914	None:intergenic	40.0%
	GCTTGCTCATAGAAATATGC+AGG	-	chr7_1:78574287-78574306	None:intergenic	40.0%
!!!	TTCTTCTGAAGCTTTTCCTG+AGG	-	chr7_1:78574335-78574354	None:intergenic	40.0%
	AATGAATCACTACCAAGTGG+AGG	+	chr7_1:78574407-78574426	Msa1041050:CDS	40.0%
!!	TGATGATCGGGTTGATGATT+GGG	-	chr7_1:78574482-78574501	None:intergenic	40.0%
!!	TTGATGATCGGGTTGATGAT+TGG	-	chr7_1:78574483-78574502	None:intergenic	40.0%
!	TCAACCCGATCATCAAGTTT+TGG	+	chr7_1:78574487-78574506	Msa1041050:CDS	40.0%
!	CAACCCGATCATCAAGTTTT+GGG	+	chr7_1:78574488-78574507	Msa1041050:CDS	40.0%
!	TCTCCCAAAACTTGATGATC+GGG	-	chr7_1:78574494-78574513	None:intergenic	40.0%
!	CTCTCCCAAAACTTGATGAT+CGG	-	chr7_1:78574495-78574514	None:intergenic	40.0%
	TGTATCCAAGACGTATATGG+AGG	-	chr7_1:78574575-78574594	None:intergenic	40.0%
!	AGGGTGAAGACCGATTTATT+AGG	+	chr7_1:78574916-78574935	Msa1041050:CDS	40.0%
	AGGACGGTATTTGATGAACA+TGG	+	chr7_1:78575220-78575239	Msa1041050:intron	40.0%
	ATTGTTAAGGATGTCATCGG+AGG	+	chr7_1:78575265-78575284	Msa1041050:CDS	40.0%
	AGGTACCAGTTCAGAAATTC+AGG	+	chr7_1:78575285-78575304	Msa1041050:CDS	40.0%
!	TTTTTACTGTCGTCGTTGCA+TGG	+	chr7_1:78575583-78575602	Msa1041050:CDS	40.0%
!!	TTTTGAGAACAACCGTGCAA+AGG	-	chr7_1:78575734-78575753	None:intergenic	40.0%
	GAAGAAACATGGTTGCTTAC+TGG	-	chr7_1:78575767-78575786	None:intergenic	40.0%
	AGTTCGAAAAGCAACCAGTT+TGG	+	chr7_1:78575852-78575871	Msa1041050:intron	40.0%
	CACTTGTGTGACTCAATAGA+AGG	+	chr7_1:78576019-78576038	Msa1041050:CDS	40.0%
	AGTCTACTACTCTTTCGGAT+TGG	+	chr7_1:78576056-78576075	Msa1041050:CDS	40.0%
	ATGGTTAGAGCTTAAGTGTG+AGG	-	chr7_1:78576161-78576180	None:intergenic	40.0%
!	TGATGTTCCATTTTCGTCCA+TGG	-	chr7_1:78576317-78576336	None:intergenic	40.0%
	GAGAGAGAAAGTCTCTTTGA+CGG	-	chr7_1:78576607-78576626	None:intergenic	40.0%
	CTTGTGGACTTCCATCTAAA+TGG	+	chr7_1:78576835-78576854	Msa1041050:CDS	40.0%
	GTATACACCTTGTGAATGTG+AGG	+	chr7_1:78576902-78576921	Msa1041050:CDS	40.0%
	CGGCCACAAAATAATAGAGA+GGG	-	chr7_1:78577302-78577321	None:intergenic	40.0%
!!	CCTCTCTATTATTTTGTGGC+CGG	+	chr7_1:78577300-78577319	Msa1041050:intron	40.0%
	TAGTTGTGGAGATGGTAACT+TGG	+	chr7_1:78577607-78577626	Msa1041050:intron	40.0%
	AGTTGTGGAGATGGTAACTT+GGG	+	chr7_1:78577608-78577627	Msa1041050:intron	40.0%
	TTTGTCAGATTCTTTGGGCA+AGG	+	chr7_1:78577774-78577793	Msa1041050:intron	40.0%
	CATATAGAAGCTGATAAGCG+TGG	+	chr7_1:78577972-78577991	Msa1041050:CDS	40.0%
!	TGTCTTGATGCTTTTCGCAA+AGG	+	chr7_1:78578245-78578264	Msa1041050:CDS	40.0%
!	GTCTTGATGCTTTTCGCAAA+GGG	+	chr7_1:78578246-78578265	Msa1041050:CDS	40.0%
	CAAAGGAACACATTGAAGCT+GGG	+	chr7_1:78578455-78578474	Msa1041050:CDS	40.0%
	AAAGGAACACATTGAAGCTG+GGG	+	chr7_1:78578456-78578475	Msa1041050:CDS	40.0%
	AGAAGTTTATGTAGCCATGG+TGG	-	chr7_1:78578523-78578542	None:intergenic	40.0%
	ACCATGGCTACATAAACTTC+TGG	+	chr7_1:78578522-78578541	Msa1041050:CDS	40.0%
	TCCAGAAGTTTATGTAGCCA+TGG	-	chr7_1:78578526-78578545	None:intergenic	40.0%
	TGTTGGATCATCATCTTCCT+TGG	-	chr7_1:78578557-78578576	None:intergenic	40.0%
	GGATAGGAAAAACATGGAGG+GGG	+	chr7_1:78573812-78573831	Msa1041050:five_prime_UTR	45.0%
	CAAAGTGGCAATTAGGGTAC+TGG	+	chr7_1:78574142-78574161	Msa1041050:intron	45.0%
	GGACTATAGAACTTACACGG+TGG	-	chr7_1:78574461-78574480	None:intergenic	45.0%
!!!	CGATCATCAAGTTTTGGGAG+AGG	+	chr7_1:78574493-78574512	Msa1041050:CDS	45.0%
	GGTTACCTCCATATACGTCT+TGG	+	chr7_1:78574567-78574586	Msa1041050:CDS	45.0%
	CGTCTTGGATACATTTAGCC+AGG	+	chr7_1:78574582-78574601	Msa1041050:CDS	45.0%
	TGAAGAGTCAAACGAGCACA+AGG	+	chr7_1:78574872-78574891	Msa1041050:CDS	45.0%
	TCATCACCACATGGTTCTCT+GGG	-	chr7_1:78575893-78575912	None:intergenic	45.0%
	AGGTAACAGTCATCACCACA+TGG	-	chr7_1:78575902-78575921	None:intergenic	45.0%
	CTCAATAGAAGGACAAGCTG+AGG	+	chr7_1:78576030-78576049	Msa1041050:CDS	45.0%
	AATAGAAGGACAAGCTGAGG+AGG	+	chr7_1:78576033-78576052	Msa1041050:CDS	45.0%
	GGAGGAGTCTACTACTCTTT+CGG	+	chr7_1:78576051-78576070	Msa1041050:CDS	45.0%
!	TTTTCGTCCATGGATCCATG+TGG	-	chr7_1:78576307-78576326	None:intergenic	45.0%
	CATGGATCCATGGACGAAAA+TGG	+	chr7_1:78576307-78576326	Msa1041050:CDS	45.0%
	TAAACTATTGGGGGATGGGA+TGG	+	chr7_1:78576549-78576568	Msa1041050:intron	45.0%
	AAACTATTGGGGGATGGGAT+GGG	+	chr7_1:78576550-78576569	Msa1041050:intron	45.0%
	TTTGACGGTGGTTTGAGGAT+GGG	-	chr7_1:78576592-78576611	None:intergenic	45.0%
	AGAGAAAGTCTCTTTGACGG+TGG	-	chr7_1:78576604-78576623	None:intergenic	45.0%
	AGGACAATGAGATGACATCG+AGG	+	chr7_1:78576757-78576776	Msa1041050:intron	45.0%
	ATGAGATGACATCGAGGTCA+AGG	+	chr7_1:78576763-78576782	Msa1041050:CDS	45.0%
	ACATGGACATTGCTTTCCAC+AGG	-	chr7_1:78576931-78576950	None:intergenic	45.0%
!!	ACAGAGCTTTGAACACCTGA+AGG	-	chr7_1:78577068-78577087	None:intergenic	45.0%
	TCTCTCGAAGCTGCAAAACA+TGG	-	chr7_1:78577148-78577167	None:intergenic	45.0%
	CCGGCCACAAAATAATAGAG+AGG	-	chr7_1:78577303-78577322	None:intergenic	45.0%
	AAGGTCTGATGTTGCTGGAT+GGG	+	chr7_1:78577793-78577812	Msa1041050:CDS	45.0%
	TGGATGGGGAGCTTTCTTAA+AGG	+	chr7_1:78577808-78577827	Msa1041050:CDS	45.0%
	GTTAATGGGGATCATCGAGT+AGG	+	chr7_1:78578424-78578443	Msa1041050:CDS	45.0%
	GCAAAGGAACACATTGAAGC+TGG	+	chr7_1:78578454-78578473	Msa1041050:CDS	45.0%
	ACGAAAATAGTCGACCACCA+TGG	+	chr7_1:78578506-78578525	Msa1041050:CDS	45.0%
!	ACTTCTGGATGATGGTTCCA+AGG	+	chr7_1:78578537-78578556	Msa1041050:CDS	45.0%
	GGCATCCTGATACTTCTCAC+AGG	-	chr7_1:78574536-78574555	None:intergenic	50.0%
	TCAGGATGCCAAGCATCAAC+AGG	+	chr7_1:78574546-78574565	Msa1041050:CDS	50.0%
	GGAGGTAACCTGTTGATGCT+TGG	-	chr7_1:78574557-78574576	None:intergenic	50.0%
!	CCTTCAGGTTCTTGCCAAAC+TGG	-	chr7_1:78575869-78575888	None:intergenic	50.0%
	CCAGTTTGGCAAGAACCTGA+AGG	+	chr7_1:78575866-78575885	Msa1041050:CDS	50.0%
	GTCATCACCACATGGTTCTC+TGG	-	chr7_1:78575894-78575913	None:intergenic	50.0%
	GCTGAAGAGTCAATGCCACA+TGG	+	chr7_1:78576289-78576308	Msa1041050:CDS	50.0%
	GTCAATGCCACATGGATCCA+TGG	+	chr7_1:78576297-78576316	Msa1041050:CDS	50.0%
	AACTATTGGGGGATGGGATG+GGG	+	chr7_1:78576551-78576570	Msa1041050:intron	50.0%
	TTGAGGATGGGGATCTTACG+TGG	-	chr7_1:78576580-78576599	None:intergenic	50.0%
	TTGACGGTGGTTTGAGGATG+GGG	-	chr7_1:78576591-78576610	None:intergenic	50.0%
	CTTTGACGGTGGTTTGAGGA+TGG	-	chr7_1:78576593-78576612	None:intergenic	50.0%
	GTCTCTTTGACGGTGGTTTG+AGG	-	chr7_1:78576597-78576616	None:intergenic	50.0%
	CAAGGTCTGATGTTGCTGGA+TGG	+	chr7_1:78577792-78577811	Msa1041050:CDS	50.0%
	AGGTCTGATGTTGCTGGATG+GGG	+	chr7_1:78577794-78577813	Msa1041050:CDS	50.0%
!!	TCAGCGAGAGCACTGTTTCT+TGG	-	chr7_1:78578596-78578615	None:intergenic	50.0%
!!	CATGGTTCTCTGGGACCTTC+AGG	-	chr7_1:78575884-78575903	None:intergenic	55.0%
	GAAGGTCCCAGAGAACCATG+TGG	+	chr7_1:78575884-78575903	Msa1041050:CDS	55.0%
	CAGGCTCCCTCACATTCACA+AGG	-	chr7_1:78576912-78576931	None:intergenic	55.0%
	TGTGAATGTGAGGGAGCCTG+TGG	+	chr7_1:78576912-78576931	Msa1041050:CDS	55.0%
	TTGGGAGAGTCGTCTCATCG+TGG	+	chr7_1:78577626-78577645	Msa1041050:CDS	55.0%
	AGAGTCGTCTCATCGTGGAG+AGG	+	chr7_1:78577631-78577650	Msa1041050:CDS	55.0%
	TGGGCAAGGTCTGATGTTGC+TGG	+	chr7_1:78577788-78577807	Msa1041050:CDS	55.0%
	GGAACACATTGAAGCTGGGG+AGG	+	chr7_1:78578459-78578478	Msa1041050:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	78573794	78578615	78573794	ID=Msa1041050;Name=Msa1041050
chr7_1	mRNA	78573794	78578615	78573794	ID=Msa1041050-mRNA-1;Parent=Msa1041050;Name=Msa1041050-mRNA-1;_AED=0.10;_eAED=0.10;_QI=177\|0.57\|0.4\|1\|1\|1\|15\|0\|654
chr7_1	exon	78573794	78573919	78573794	ID=Msa1041050-mRNA-1:exon:20993;Parent=Msa1041050-mRNA-1
chr7_1	exon	78574338	78574603	78574338	ID=Msa1041050-mRNA-1:exon:20994;Parent=Msa1041050-mRNA-1
chr7_1	exon	78574776	78574937	78574776	ID=Msa1041050-mRNA-1:exon:20995;Parent=Msa1041050-mRNA-1
chr7_1	exon	78575222	78575306	78575222	ID=Msa1041050-mRNA-1:exon:20996;Parent=Msa1041050-mRNA-1
chr7_1	exon	78575464	78575604	78575464	ID=Msa1041050-mRNA-1:exon:20997;Parent=Msa1041050-mRNA-1
chr7_1	exon	78575719	78575766	78575719	ID=Msa1041050-mRNA-1:exon:20998;Parent=Msa1041050-mRNA-1
chr7_1	exon	78575854	78576134	78575854	ID=Msa1041050-mRNA-1:exon:20999;Parent=Msa1041050-mRNA-1
chr7_1	exon	78576222	78576351	78576222	ID=Msa1041050-mRNA-1:exon:21000;Parent=Msa1041050-mRNA-1
chr7_1	exon	78576759	78576985	78576759	ID=Msa1041050-mRNA-1:exon:21001;Parent=Msa1041050-mRNA-1
chr7_1	exon	78577072	78577203	78577072	ID=Msa1041050-mRNA-1:exon:21002;Parent=Msa1041050-mRNA-1
chr7_1	exon	78577610	78577697	78577610	ID=Msa1041050-mRNA-1:exon:21003;Parent=Msa1041050-mRNA-1
chr7_1	exon	78577782	78577829	78577782	ID=Msa1041050-mRNA-1:exon:21004;Parent=Msa1041050-mRNA-1
chr7_1	exon	78577918	78578046	78577918	ID=Msa1041050-mRNA-1:exon:21005;Parent=Msa1041050-mRNA-1
chr7_1	exon	78578242	78578319	78578242	ID=Msa1041050-mRNA-1:exon:21006;Parent=Msa1041050-mRNA-1
chr7_1	exon	78578415	78578615	78578415	ID=Msa1041050-mRNA-1:exon:21007;Parent=Msa1041050-mRNA-1
chr7_1	five_prime_UTR	78573794	78573919	78573794	ID=Msa1041050-mRNA-1:five_prime_utr;Parent=Msa1041050-mRNA-1
chr7_1	five_prime_UTR	78574338	78574388	78574338	ID=Msa1041050-mRNA-1:five_prime_utr;Parent=Msa1041050-mRNA-1
chr7_1	CDS	78574389	78574603	78574389	ID=Msa1041050-mRNA-1:cds;Parent=Msa1041050-mRNA-1
chr7_1	CDS	78574776	78574937	78574776	ID=Msa1041050-mRNA-1:cds;Parent=Msa1041050-mRNA-1
chr7_1	CDS	78575222	78575306	78575222	ID=Msa1041050-mRNA-1:cds;Parent=Msa1041050-mRNA-1
chr7_1	CDS	78575464	78575604	78575464	ID=Msa1041050-mRNA-1:cds;Parent=Msa1041050-mRNA-1
chr7_1	CDS	78575719	78575766	78575719	ID=Msa1041050-mRNA-1:cds;Parent=Msa1041050-mRNA-1
chr7_1	CDS	78575854	78576134	78575854	ID=Msa1041050-mRNA-1:cds;Parent=Msa1041050-mRNA-1
chr7_1	CDS	78576222	78576351	78576222	ID=Msa1041050-mRNA-1:cds;Parent=Msa1041050-mRNA-1
chr7_1	CDS	78576759	78576985	78576759	ID=Msa1041050-mRNA-1:cds;Parent=Msa1041050-mRNA-1
chr7_1	CDS	78577072	78577203	78577072	ID=Msa1041050-mRNA-1:cds;Parent=Msa1041050-mRNA-1
chr7_1	CDS	78577610	78577697	78577610	ID=Msa1041050-mRNA-1:cds;Parent=Msa1041050-mRNA-1
chr7_1	CDS	78577782	78577829	78577782	ID=Msa1041050-mRNA-1:cds;Parent=Msa1041050-mRNA-1
chr7_1	CDS	78577918	78578046	78577918	ID=Msa1041050-mRNA-1:cds;Parent=Msa1041050-mRNA-1
chr7_1	CDS	78578242	78578319	78578242	ID=Msa1041050-mRNA-1:cds;Parent=Msa1041050-mRNA-1
chr7_1	CDS	78578415	78578615	78578415	ID=Msa1041050-mRNA-1:cds;Parent=Msa1041050-mRNA-1

Gene Sequence

>Msa1041050

ATGTTAGTAATATCAAAAAATGAATCACTACCAAGTGGAGGAAATATTCTTTCTTCAAGAATGAATCGTCCACCGTGTAAGTTCTATAGTCCCAATCATCAACCCGATCATCAAGTTTTGGGAGAGGAAGACCGTAGCAAAAAACCTGTGAGAAGTATCAGGATGCCAAGCATCAACAGGTTACCTCCATATACGTCTTGGATACATTTAGCCAGAAATGAAAAAATGACTGCAGATCAGTCAGTTTCTAGAAAAAGAAATGTATATTATGATCATCAGGAAGGTGAAACATTAGTATGCAGTGATAGTGATGAAGAGTCAAACGAGCACAAGGAAGTTGAACGTAAATTTTCTCAGGGTGAAGACCGATTTATTAGGACGGTATTTGATGAACATGGTTTAACTGAGGAAGTGTTGAGTATTGTTAAGGATGTCATCGGAGGTACCAGTTCAGAAATTCAGGAGCGATATAAAAATATCAAGGAAAAGGACCAAAATGATGAAGATCGTAGAGAAAGTGAATCTCAGACTGATATAAGCTTGAACAAAAGCTTGAGTGCCTCTTTAGATACTTTTGATCATTTTTACTGTCGTCGTTGCATGATCTTTGATTGTCCTTTGCACGGTTGTTCTCAAAAGATAATATACCCATTCGAAAAGCAACCAGTTTGGCAAGAACCTGAAGGTCCCAGAGAACCATGTGGTGATGACTGTTACCTTCATAATAAAGATGTCACAATTAGTAATTGTATGAGGGGCTTAAATTTGGATGCTAACAATGAAGAAAAAAATGATATGGAGGAAACAAAATCGAAACACTTGTGTGACTCAATAGAAGGACAAGCTGAGGAGGAGTCTACTACTCTTTCGGATTGGAAACTTTTGGAAAAAGAATTATACTTGAAGGGAATAGAAATGTTTGGGAGAAATAGTTGTCTTATAGCTAAGAACTTACTTTTTATGATGAAGACTTGCAAGGAAGTTGCTAGATACATGTATGCTGAAGAGTCAATGCCACATGGATCCATGGACGAAAATGGAACATCAGATGCAATGCGCATTGACAATGAGATGACATCGAGGTCAAGGTCGTTGCAAAGAAAGAGCAAATCTAAGAAGTTCAAATATTCTTCAAAATCTTGTGGACTTCCATCTAAATGGAAAAGAAGAAGAAATACTGATGAGAAAAACAAACTGGAGAAGCAGTATACACCTTGTGAATGTGAGGGAGCCTGTGGAAAGCAATGTCCATGTCTTCTTAATAGTTCTTGCTGTGAAAAATATTGCGGGTGTTCAAAGCTCTGTAAAAATCGATTTGGAGGATGTCAGTGTACTAAGAGTCAGTGTAGAAGTCGACACTGTCCATGTTTTGCAGCTTCGAGAGATTGTGACCCTGATGTATGTCGAAATTGTTGGGTTAGTTGTGGAGATGGTAACTTGGGAGAGTCGTCTCATCGTGGAGAGGATCAATGTGAAAACATGATGCTTCTTGTAAGGAAACAACAAAAGATTCTTTGGGCAAGGTCTGATGTTGCTGGATGGGGAGCTTTCTTAAAGGCCCCAGCAAACAAAAATGATTTTTTAGGAGAGTACACTGGTGAAGTAATCTCTCATATAGAAGCTGATAAGCGTGGAAAATTTTATGATCGTGTAGACTTTTCGTACCTTTTTAACTTGAATGATACGTACTGTCTTGATGCTTTTCGCAAAGGGAACAAGTTGAAGTTTGCAAATCACGCATCAAAAGCTAATTGCTATGGAAAGATTGTGTTTGTTAATGGGGATCATCGAGTAGGAATATTTGCAAAGGAACACATTGAAGCTGGGGAGGAGCTTTTCTTTGATTACGGGTATGACGAAAATAGTCGACCACCATGGCTACATAAACTTCTGGATGATGGTTCCAAGGAAGATGATGATCCAACATTTTCTCAAGGAAAAGCCAAGAAACAGTGCTCTCGCTGA

Protein sequence

>Msa1041050

MLVISKNESLPSGGNILSSRMNRPPCKFYSPNHQPDHQVLGEEDRSKKPVRSIRMPSINRLPPYTSWIHLARNEKMTADQSVSRKRNVYYDHQEGETLVCSDSDEESNEHKEVERKFSQGEDRFIRTVFDEHGLTEEVLSIVKDVIGGTSSEIQERYKNIKEKDQNDEDRRESESQTDISLNKSLSASLDTFDHFYCRRCMIFDCPLHGCSQKIIYPFEKQPVWQEPEGPREPCGDDCYLHNKDVTISNCMRGLNLDANNEEKNDMEETKSKHLCDSIEGQAEEESTTLSDWKLLEKELYLKGIEMFGRNSCLIAKNLLFMMKTCKEVARYMYAEESMPHGSMDENGTSDAMRIDNEMTSRSRSLQRKSKSKKFKYSSKSCGLPSKWKRRRNTDEKNKLEKQYTPCECEGACGKQCPCLLNSSCCEKYCGCSKLCKNRFGGCQCTKSQCRSRHCPCFAASRDCDPDVCRNCWVSCGDGNLGESSHRGEDQCENMMLLVRKQQKILWARSDVAGWGAFLKAPANKNDFLGEYTGEVISHIEADKRGKFYDRVDFSYLFNLNDTYCLDAFRKGNKLKFANHASKANCYGKIVFVNGDHRVGIFAKEHIEAGEELFFDYGYDENSRPPWLHKLLDDGSKEDDDPTFSQGKAKKQCSR*