AlfalfaGEDB | Msa1041050

M. sativa cultivar zhongmu-4 / Msa1041050

KEGG: K11430
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005911 GO:0006139 GO:0006325 GO:0006342 GO:0006349 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009653 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0017053 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0030054 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031519 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048316 GO:0048317 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048587 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0055044 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070734 GO:0071514 GO:0071704 GO:0071840 GO:0080050 GO:0080090 GO:0090568 GO:0090698 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:2000014 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2001141
PFAM: PF18264.4

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041050	AES82191.2	91.476	657	48	3	1	654	113	764	0.0	1193

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041050	sp\|Q9ZSM8\|EZA1_ARATH	59.008	383	144	5	278	653	479	855	3.91e-150	459
Msa1041050	sp\|Q9ZSM8\|EZA1_ARATH	45.992	237	114	4	15	245	86	314	1.05e-52	198

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041050	G7KSU0	91.476	657	48	3	1	654	113	764	0.0	1193

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TFs/TRs:

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Gene ID	Type	Classification
Msa1041050	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1041050	Msa1082420	0.949021	2.948851e-107	-8.615850e-47
Msa1041050	Msa1127210	0.923687	1.911430e-89	-8.615850e-47
Msa1041050	Msa1165450	0.933638	1.383010e-95	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041050	MtrunA17_Chr7g0270001	92.780	277	17	1	381	654	24	300	0.0	530
Msa1041050	MtrunA17_Chr7g0270011	75.141	354	29	4	1	354	1	295	0.0	516
Msa1041050	MtrunA17_Chr1g0194631	59.036	415	153	7	245	651	351	756	1.90e-161	482
Msa1041050	MtrunA17_Chr1g0194631	51.271	236	108	2	15	245	19	252	5.21e-69	239
Msa1041050	MtrunA17_Chr5g0401921	56.233	377	157	5	279	650	488	861	2.09e-133	412
Msa1041050	MtrunA17_Chr5g0401921	42.254	213	118	1	32	239	126	338	2.76e-47	179
Msa1041050	MtrunA17_Chr7g0235081	58.841	345	133	7	311	650	4	344	4.77e-129	384
Msa1041050	MtrunA17_Chr7g0235091	45.091	275	118	6	51	310	53	309	1.59e-68	226
Msa1041050	MtrunA17_Chr5g0405161	55.440	193	52	4	155	346	12	171	5.46e-57	192
Msa1041050	MtrunA17_Chr5g0405161	53.571	56	26	0	147	202	166	221	5.72e-11	63.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041050	AT4G02020.1	59.008	383	144	5	278	653	479	855	3.97e-151	459
Msa1041050	AT4G02020.1	45.992	237	114	4	15	245	86	314	1.07e-53	198
Msa1041050	AT2G23380.2	51.422	422	170	6	258	650	258	673	3.69e-134	409
Msa1041050	AT2G23380.2	43.182	88	46	2	153	239	7	91	6.12e-15	79.0
Msa1041050	AT2G23380.1	51.422	422	170	6	258	650	485	900	1.05e-132	412
Msa1041050	AT2G23380.1	42.574	202	112	2	39	239	120	318	2.62e-42	164
Msa1041050	AT1G02580.1	41.463	574	292	11	52	618	124	660	4.10e-132	404
Msa1041050	AT4G02020.4	60.312	320	117	3	278	590	479	795	3.17e-129	400
Msa1041050	AT4G02020.4	45.992	237	114	4	15	245	86	314	5.96e-54	198
Msa1041050	AT4G02020.3	57.929	309	118	4	278	577	479	784	1.09e-113	360

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Find 117 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATGATGCTTCTTGTA+AGG	0.500417	7_1:+78577663	Msa1041050:CDS
AAAAGCTAATTGCTATGGAA+AGG	0.554769	7_1:+78578298	Msa1041050:CDS
AAAGGAACACATTGAAGCTG+GGG	0.641785	7_1:+78578456	Msa1041050:CDS
AAATATTCTTCAAAATCTTG+TGG	0.468339	7_1:+78576819	Msa1041050:CDS
AAATGTATATTATGATCATC+AGG	0.462380	7_1:+78574818	Msa1041050:CDS
AAATGTATCCAAGACGTATA+TGG	0.398309	7_1:-78574575	None:intergenic
AACAATTTCGACATACATCA+GGG	0.601740	7_1:-78577174	None:intergenic
AAGGTCTGATGTTGCTGGAT+GGG	0.377084	7_1:+78577793	Msa1041050:CDS
AATAGAAGGACAAGCTGAGG+AGG	0.588743	7_1:+78576033	Msa1041050:CDS
AATGAATCACTACCAAGTGG+AGG	0.658347	7_1:+78574407	Msa1041050:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGTATGGATAGGAAAAACA+TGG	+	chr7_1:78573806-78573825	Msa1041050:five_prime_UTR	30.0%
TTTGACGAACAAGATACATT+TGG	+	chr7_1:78573856-78573875	Msa1041050:five_prime_UTR	30.0%
CCATTAAAGTGAGTTCAATT+CGG	+	chr7_1:78573912-78573931	Msa1041050:intron	30.0%
ATTTCCCCCTCAATTTATAA+TGG	-	chr7_1:78574010-78574029	None:intergenic	30.0%
AAAAGAGAATGCTTCATGTA+AGG	-	chr7_1:78574184-78574203	None:intergenic	30.0%
AAAAATGAATCACTACCAAG+TGG	+	chr7_1:78574404-78574423	Msa1041050:CDS	30.0%
AAATGTATCCAAGACGTATA+TGG	-	chr7_1:78574578-78574597	None:intergenic	30.0%
ATTTATAAGTCAAACACACC+TGG	-	chr7_1:78574603-78574622	None:intergenic	30.0%
GTATATTATGATCATCAGGA+AGG	+	chr7_1:78574822-78574841	Msa1041050:CDS	30.0%
GAATTTACATCACTAACAAC+AGG	-	chr7_1:78575051-78575070	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	78573794	78578615	78573794	ID=Msa1041050;Name=Msa1041050
chr7_1	mRNA	78573794	78578615	78573794	ID=Msa1041050-mRNA-1;Parent=Msa1041050;Name=Msa1041050-mRNA-1;_AED=0.10;_eAED=0.10;_QI=177\|0.57\|0.4\|1\|1\|1\|15\|0\|654
chr7_1	exon	78573794	78573919	78573794	ID=Msa1041050-mRNA-1:exon:20993;Parent=Msa1041050-mRNA-1
chr7_1	exon	78574338	78574603	78574338	ID=Msa1041050-mRNA-1:exon:20994;Parent=Msa1041050-mRNA-1
chr7_1	exon	78574776	78574937	78574776	ID=Msa1041050-mRNA-1:exon:20995;Parent=Msa1041050-mRNA-1
chr7_1	exon	78575222	78575306	78575222	ID=Msa1041050-mRNA-1:exon:20996;Parent=Msa1041050-mRNA-1
chr7_1	exon	78575464	78575604	78575464	ID=Msa1041050-mRNA-1:exon:20997;Parent=Msa1041050-mRNA-1
chr7_1	exon	78575719	78575766	78575719	ID=Msa1041050-mRNA-1:exon:20998;Parent=Msa1041050-mRNA-1
chr7_1	exon	78575854	78576134	78575854	ID=Msa1041050-mRNA-1:exon:20999;Parent=Msa1041050-mRNA-1
chr7_1	exon	78576222	78576351	78576222	ID=Msa1041050-mRNA-1:exon:21000;Parent=Msa1041050-mRNA-1
chr7_1	exon	78576759	78576985	78576759	ID=Msa1041050-mRNA-1:exon:21001;Parent=Msa1041050-mRNA-1
chr7_1	exon	78577072	78577203	78577072	ID=Msa1041050-mRNA-1:exon:21002;Parent=Msa1041050-mRNA-1
chr7_1	exon	78577610	78577697	78577610	ID=Msa1041050-mRNA-1:exon:21003;Parent=Msa1041050-mRNA-1
chr7_1	exon	78577782	78577829	78577782	ID=Msa1041050-mRNA-1:exon:21004;Parent=Msa1041050-mRNA-1
chr7_1	exon	78577918	78578046	78577918	ID=Msa1041050-mRNA-1:exon:21005;Parent=Msa1041050-mRNA-1
chr7_1	exon	78578242	78578319	78578242	ID=Msa1041050-mRNA-1:exon:21006;Parent=Msa1041050-mRNA-1
chr7_1	exon	78578415	78578615	78578415	ID=Msa1041050-mRNA-1:exon:21007;Parent=Msa1041050-mRNA-1
chr7_1	five_prime_UTR	78573794	78573919	78573794	ID=Msa1041050-mRNA-1:five_prime_utr;Parent=Msa1041050-mRNA-1
chr7_1	five_prime_UTR	78574338	78574388	78574338	ID=Msa1041050-mRNA-1:five_prime_utr;Parent=Msa1041050-mRNA-1
chr7_1	CDS	78574389	78574603	78574389	ID=Msa1041050-mRNA-1:cds;Parent=Msa1041050-mRNA-1
chr7_1	CDS	78574776	78574937	78574776	ID=Msa1041050-mRNA-1:cds;Parent=Msa1041050-mRNA-1
chr7_1	CDS	78575222	78575306	78575222	ID=Msa1041050-mRNA-1:cds;Parent=Msa1041050-mRNA-1
chr7_1	CDS	78575464	78575604	78575464	ID=Msa1041050-mRNA-1:cds;Parent=Msa1041050-mRNA-1
chr7_1	CDS	78575719	78575766	78575719	ID=Msa1041050-mRNA-1:cds;Parent=Msa1041050-mRNA-1
chr7_1	CDS	78575854	78576134	78575854	ID=Msa1041050-mRNA-1:cds;Parent=Msa1041050-mRNA-1
chr7_1	CDS	78576222	78576351	78576222	ID=Msa1041050-mRNA-1:cds;Parent=Msa1041050-mRNA-1
chr7_1	CDS	78576759	78576985	78576759	ID=Msa1041050-mRNA-1:cds;Parent=Msa1041050-mRNA-1
chr7_1	CDS	78577072	78577203	78577072	ID=Msa1041050-mRNA-1:cds;Parent=Msa1041050-mRNA-1
chr7_1	CDS	78577610	78577697	78577610	ID=Msa1041050-mRNA-1:cds;Parent=Msa1041050-mRNA-1
chr7_1	CDS	78577782	78577829	78577782	ID=Msa1041050-mRNA-1:cds;Parent=Msa1041050-mRNA-1
chr7_1	CDS	78577918	78578046	78577918	ID=Msa1041050-mRNA-1:cds;Parent=Msa1041050-mRNA-1
chr7_1	CDS	78578242	78578319	78578242	ID=Msa1041050-mRNA-1:cds;Parent=Msa1041050-mRNA-1
chr7_1	CDS	78578415	78578615	78578415	ID=Msa1041050-mRNA-1:cds;Parent=Msa1041050-mRNA-1

Gene Sequence

>Msa1041050

ATGTTAGTAATATCAAAAAATGAATCACTACCAAGTGGAGGAAATATTCTTTCTTCAAGAATGAATCGTCCACCGTGTAAGTTCTATAGTCCCAATCATCAACCCGATCATCAAGTTTTGGGAGAGGAAGACCGTAGCAAAAAACCTGTGAGAAGTATCAGGATGCCAAGCATCAACAGGTTACCTCCATATACGTCTTGGATACATTTAGCCAGAAATGAAAAAATGACTGCAGATCAGTCAGTTTCTAGAAAAAGAAATGTATATTATGATCATCAGGAAGGTGAAACATTAGTATGCAGTGATAGTGATGAAGAGTCAAACGAGCACAAGGAAGTTGAACGTAAATTTTCTCAGGGTGAAGACCGATTTATTAGGACGGTATTTGATGAACATGGTTTAACTGAGGAAGTGTTGAGTATTGTTAAGGATGTCATCGGAGGTACCAGTTCAGAAATTCAGGAGCGATATAAAAATATCAAGGAAAAGGACCAAAATGATGAAGATCGTAGAGAAAGTGAATCTCAGACTGATATAAGCTTGAACAAAAGCTTGAGTGCCTCTTTAGATACTTTTGATCATTTTTACTGTCGTCGTTGCATGATCTTTGATTGTCCTTTGCACGGTTGTTCTCAAAAGATAATATACCCATTCGAAAAGCAACCAGTTTGGCAAGAACCTGAAGGTCCCAGAGAACCATGTGGTGATGACTGTTACCTTCATAATAAAGATGTCACAATTAGTAATTGTATGAGGGGCTTAAATTTGGATGCTAACAATGAAGAAAAAAATGATATGGAGGAAACAAAATCGAAACACTTGTGTGACTCAATAGAAGGACAAGCTGAGGAGGAGTCTACTACTCTTTCGGATTGGAAACTTTTGGAAAAAGAATTATACTTGAAGGGAATAGAAATGTTTGGGAGAAATAGTTGTCTTATAGCTAAGAACTTACTTTTTATGATGAAGACTTGCAAGGAAGTTGCTAGATACATGTATGCTGAAGAGTCAATGCCACATGGATCCATGGACGAAAATGGAACATCAGATGCAATGCGCATTGACAATGAGATGACATCGAGGTCAAGGTCGTTGCAAAGAAAGAGCAAATCTAAGAAGTTCAAATATTCTTCAAAATCTTGTGGACTTCCATCTAAATGGAAAAGAAGAAGAAATACTGATGAGAAAAACAAACTGGAGAAGCAGTATACACCTTGTGAATGTGAGGGAGCCTGTGGAAAGCAATGTCCATGTCTTCTTAATAGTTCTTGCTGTGAAAAATATTGCGGGTGTTCAAAGCTCTGTAAAAATCGATTTGGAGGATGTCAGTGTACTAAGAGTCAGTGTAGAAGTCGACACTGTCCATGTTTTGCAGCTTCGAGAGATTGTGACCCTGATGTATGTCGAAATTGTTGGGTTAGTTGTGGAGATGGTAACTTGGGAGAGTCGTCTCATCGTGGAGAGGATCAATGTGAAAACATGATGCTTCTTGTAAGGAAACAACAAAAGATTCTTTGGGCAAGGTCTGATGTTGCTGGATGGGGAGCTTTCTTAAAGGCCCCAGCAAACAAAAATGATTTTTTAGGAGAGTACACTGGTGAAGTAATCTCTCATATAGAAGCTGATAAGCGTGGAAAATTTTATGATCGTGTAGACTTTTCGTACCTTTTTAACTTGAATGATACGTACTGTCTTGATGCTTTTCGCAAAGGGAACAAGTTGAAGTTTGCAAATCACGCATCAAAAGCTAATTGCTATGGAAAGATTGTGTTTGTTAATGGGGATCATCGAGTAGGAATATTTGCAAAGGAACACATTGAAGCTGGGGAGGAGCTTTTCTTTGATTACGGGTATGACGAAAATAGTCGACCACCATGGCTACATAAACTTCTGGATGATGGTTCCAAGGAAGATGATGATCCAACATTTTCTCAAGGAAAAGCCAAGAAACAGTGCTCTCGCTGA

Protein sequence

>Msa1041050

MLVISKNESLPSGGNILSSRMNRPPCKFYSPNHQPDHQVLGEEDRSKKPVRSIRMPSINRLPPYTSWIHLARNEKMTADQSVSRKRNVYYDHQEGETLVCSDSDEESNEHKEVERKFSQGEDRFIRTVFDEHGLTEEVLSIVKDVIGGTSSEIQERYKNIKEKDQNDEDRRESESQTDISLNKSLSASLDTFDHFYCRRCMIFDCPLHGCSQKIIYPFEKQPVWQEPEGPREPCGDDCYLHNKDVTISNCMRGLNLDANNEEKNDMEETKSKHLCDSIEGQAEEESTTLSDWKLLEKELYLKGIEMFGRNSCLIAKNLLFMMKTCKEVARYMYAEESMPHGSMDENGTSDAMRIDNEMTSRSRSLQRKSKSKKFKYSSKSCGLPSKWKRRRNTDEKNKLEKQYTPCECEGACGKQCPCLLNSSCCEKYCGCSKLCKNRFGGCQCTKSQCRSRHCPCFAASRDCDPDVCRNCWVSCGDGNLGESSHRGEDQCENMMLLVRKQQKILWARSDVAGWGAFLKAPANKNDFLGEYTGEVISHIEADKRGKFYDRVDFSYLFNLNDTYCLDAFRKGNKLKFANHASKANCYGKIVFVNGDHRVGIFAKEHIEAGEELFFDYGYDENSRPPWLHKLLDDGSKEDDDPTFSQGKAKKQCSR*