Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006710 | KEH23048.1 | 96.078 | 153 | 6 | 0 | 1 | 153 | 1 | 153 | 2.23e-101 | 297 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006710 | A0A072U1L2 | 96.078 | 153 | 6 | 0 | 1 | 153 | 1 | 153 | 1.07e-101 | 297 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004840 | Msa1006710 | 0.823499 | 1.340572e-53 | -8.615850e-47 |
| Msa0020390 | Msa1006710 | 0.820216 | 7.713839e-53 | -8.615850e-47 |
| Msa0023000 | Msa1006710 | 0.804258 | 2.354610e-49 | -8.615850e-47 |
| Msa0047460 | Msa1006710 | 0.806311 | 8.750105e-50 | -8.615850e-47 |
| Msa0051860 | Msa1006710 | 0.823128 | 1.636620e-53 | -8.615850e-47 |
| Msa0065950 | Msa1006710 | 0.817970 | 2.501898e-52 | -8.615850e-47 |
| Msa0096980 | Msa1006710 | 0.818128 | 2.304463e-52 | -8.615850e-47 |
| Msa0604290 | Msa1006710 | 0.816781 | 4.632282e-52 | -8.615850e-47 |
| Msa0631350 | Msa1006710 | 0.807104 | 5.949472e-50 | -8.615850e-47 |
| Msa0724780 | Msa1006710 | 0.802267 | 6.083476e-49 | -8.615850e-47 |
| Msa0737600 | Msa1006710 | 0.816249 | 6.096836e-52 | -8.615850e-47 |
| Msa0769980 | Msa1006710 | 0.835633 | 1.498201e-56 | -8.615850e-47 |
| Msa0793380 | Msa1006710 | 0.801075 | 1.068151e-48 | -8.615850e-47 |
| Msa0140110 | Msa1006710 | 0.807922 | 3.988750e-50 | -8.615850e-47 |
| Msa0145010 | Msa1006710 | 0.816368 | 5.731784e-52 | -8.615850e-47 |
| Msa0162130 | Msa1006710 | 0.804862 | 1.762228e-49 | -8.615850e-47 |
| Msa0194480 | Msa1006710 | 0.801160 | 1.026416e-48 | -8.615850e-47 |
| Msa0387820 | Msa1006710 | 0.808046 | 3.753515e-50 | -8.615850e-47 |
| Msa0415430 | Msa1006710 | 0.804897 | 1.732592e-49 | -8.615850e-47 |
| Msa0423450 | Msa1006710 | -0.802573 | 5.262905e-49 | -8.615850e-47 |
| Msa1006710 | Msa1013070 | 0.808712 | 2.707285e-50 | -8.615850e-47 |
| Msa1006710 | Msa1023180 | 0.865620 | 5.172906e-65 | -8.615850e-47 |
| Msa1006710 | Msa1043050 | 0.855790 | 4.981338e-62 | -8.615850e-47 |
| Msa1006710 | Msa1043060 | 0.837214 | 5.930188e-57 | -8.615850e-47 |
| Msa1006710 | Msa1150710 | 0.863646 | 2.145357e-64 | -8.615850e-47 |
| Msa1006710 | Msa1206270 | 0.852204 | 5.381800e-61 | -8.615850e-47 |
| Msa1006710 | Msa1206290 | 0.856015 | 4.278831e-62 | -8.615850e-47 |
| Msa1006710 | Msa1256810 | 0.831865 | 1.310193e-55 | -8.615850e-47 |
| Msa1006710 | Msa1298010 | 0.804774 | 1.838357e-49 | -8.615850e-47 |
| Msa1006710 | Msa1440190 | 0.826421 | 2.738681e-54 | -8.615850e-47 |
| Msa1006710 | Msa1448620 | 0.915228 | 7.549657e-85 | -8.615850e-47 |
| Msa1006710 | Msa1448630 | 0.850562 | 1.567607e-60 | -8.615850e-47 |
| Msa1006710 | Msa1449750 | 0.828934 | 6.821187e-55 | -8.615850e-47 |
| Msa1006710 | Msa1458090 | 0.806127 | 9.566214e-50 | -8.615850e-47 |
| Msa0246250 | Msa1006710 | 0.810629 | 1.047961e-50 | -8.615850e-47 |
| Msa0274040 | Msa1006710 | -0.834559 | 2.794029e-56 | -8.615850e-47 |
| Msa0510840 | Msa1006710 | 0.805745 | 1.151096e-49 | -8.615850e-47 |
| Msa0534900 | Msa1006710 | 0.835030 | 2.126687e-56 | -8.615850e-47 |
| Msa0542290 | Msa1006710 | 0.802117 | 6.533287e-49 | -8.615850e-47 |
| Msa0588260 | Msa1006710 | 0.820683 | 6.025233e-53 | -8.615850e-47 |
| Msa0934840 | Msa1006710 | 0.820582 | 6.355045e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006710 | MtrunA17_Chr7g0240431 | 96.689 | 151 | 5 | 0 | 1 | 151 | 1 | 151 | 7.25e-105 | 296 |
| Msa1006710 | MtrunA17_Chr4g0008731 | 52.903 | 155 | 65 | 4 | 1 | 151 | 1 | 151 | 1.08e-44 | 144 |
| Msa1006710 | MtrunA17_Chr4g0008721 | 43.871 | 155 | 74 | 5 | 1 | 151 | 1 | 146 | 6.14e-30 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006710 | AT5G02020.1 | 53.247 | 154 | 59 | 4 | 1 | 151 | 1 | 144 | 5.10e-33 | 114 |
| Msa1006710 | AT5G59080.2 | 42.675 | 157 | 57 | 4 | 1 | 151 | 1 | 130 | 2.43e-22 | 86.7 |
| Msa1006710 | AT5G59080.1 | 42.675 | 157 | 57 | 4 | 1 | 151 | 1 | 130 | 2.43e-22 | 86.7 |
| Msa1006710 | AT5G02020.2 | 48.485 | 132 | 46 | 5 | 1 | 123 | 1 | 119 | 1.55e-20 | 82.0 |
| Msa1006710 | AT2G39855.2 | 41.481 | 135 | 57 | 6 | 21 | 151 | 21 | 137 | 1.77e-19 | 79.7 |
| Msa1006710 | AT2G39855.4 | 41.481 | 135 | 57 | 6 | 21 | 151 | 21 | 137 | 1.77e-19 | 79.7 |
| Msa1006710 | AT2G39855.3 | 62.069 | 58 | 16 | 2 | 95 | 151 | 60 | 112 | 4.96e-15 | 67.4 |
| Msa1006710 | AT3G55646.1 | 40.496 | 121 | 53 | 5 | 32 | 151 | 39 | 141 | 5.14e-15 | 68.2 |
| Msa1006710 | AT3G46880.2 | 34.868 | 152 | 57 | 4 | 1 | 151 | 1 | 111 | 6.27e-13 | 62.0 |
Find 54 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAACCTTGAGTACCGATTT+TGG | 0.195983 | 7_1:-5496901 | None:intergenic |
| AAAATAGAAATTACAATATA+GGG | 0.223199 | 7_1:-5498726 | None:intergenic |
| TCTTTCACTTCTGAACTCTT+TGG | 0.272651 | 7_1:+5496355 | Msa1006710:CDS |
| TTGCATAAATCCTCTTCTTC+TGG | 0.281952 | 7_1:+5496388 | Msa1006710:CDS |
| TAAAATAGAAATTACAATAT+AGG | 0.292817 | 7_1:-5498727 | None:intergenic |
| CTTAGCTCATCGATCTATTA+TGG | 0.302082 | 7_1:+5497489 | Msa1006710:CDS |
| CTTCACTCTGTTTGTTTCCT+AGG | 0.303970 | 7_1:+5496174 | Msa1006710:five_prime_UTR |
| CCTCAGAGTACACGAGATTC+AGG | 0.322582 | 7_1:+5497534 | Msa1006710:CDS |
| ATGGAAGGAAGGAAACAATT+TGG | 0.335652 | 7_1:+5496310 | Msa1006710:CDS |
| TCTTTCCATGTTACTAAAGA+TGG | 0.355203 | 7_1:-5498449 | None:intergenic |
| TTGGTGATGATTTAGGTGTT+TGG | 0.384622 | 7_1:+5496822 | Msa1006710:intron |
| AGAGGATTTATGCAAGTCAT+TGG | 0.396393 | 7_1:-5496380 | None:intergenic |
| TGTAAACAAGTTTGCAAATG+AGG | 0.399940 | 7_1:-5496209 | None:intergenic |
| GTATAGGAATATGTATTATC+AGG | 0.403619 | 7_1:+5498640 | Msa1006710:three_prime_UTR |
| AACTCAGAACAAAACAAATA+AGG | 0.412533 | 7_1:+5497422 | Msa1006710:CDS |
| CATATTGTGATTCTGTCGTT+TGG | 0.421307 | 7_1:-5498522 | None:intergenic |
| CTTTATCAGTACAAGAAAGA+TGG | 0.423454 | 7_1:+5497857 | Msa1006710:intron |
| GGAAAATACTCATAAAATTA+CGG | 0.427464 | 7_1:-5498764 | None:intergenic |
| TATATAATAACTATAACTAT+AGG | 0.439201 | 7_1:-5498547 | None:intergenic |
| GAAGGATCAAACTCCAAAAT+CGG | 0.439609 | 7_1:+5496888 | Msa1006710:CDS |
| ATGATATTGTATAAGTTGTA+TGG | 0.453106 | 7_1:+5498613 | Msa1006710:three_prime_UTR |
| TTGTGATTCTGTCGTTTGGC+TGG | 0.460123 | 7_1:-5498518 | None:intergenic |
| AAGAGAACAGAAGTTTGAAA+AGG | 0.475721 | 7_1:-5496139 | None:intergenic |
| TCTCTGCGCTCAGCAATGAA+TGG | 0.480583 | 7_1:+5496852 | Msa1006710:CDS |
| CAATGCAGATTACATCAGTA+AGG | 0.491806 | 7_1:+5497386 | Msa1006710:intron |
| AGGTTGTAGACTAGAGAGAG+AGG | 0.493028 | 7_1:-5496102 | None:intergenic |
| TACATCAGTAAGGGAAATGA+TGG | 0.503771 | 7_1:+5497396 | Msa1006710:CDS |
| AAAAGGAGAGACACGTGAAA+AGG | 0.505203 | 7_1:-5496122 | None:intergenic |
| CTAGGTACATTATTCTGTAC+AGG | 0.510854 | 7_1:-5498588 | None:intergenic |
| TAAGTTGTATGGTATAGTAT+AGG | 0.514490 | 7_1:+5498624 | Msa1006710:three_prime_UTR |
| AAAGCGCGTCAAGAGGAAAC+TGG | 0.522936 | 7_1:+5497897 | Msa1006710:CDS |
| AACTCCAAAATCGGTACTCA+AGG | 0.534418 | 7_1:+5496897 | Msa1006710:CDS |
| AGATTCAGGATTGAACACTA+TGG | 0.537760 | 7_1:+5497548 | Msa1006710:CDS |
| ACAAACAGAGTGAAGAAAGA+AGG | 0.555856 | 7_1:-5496166 | None:intergenic |
| TGCAGTGACAAAGTTGTGAA+TGG | 0.565227 | 7_1:+5498482 | Msa1006710:three_prime_UTR |
| AAATAGAAATTACAATATAG+GGG | 0.566541 | 7_1:-5498725 | None:intergenic |
| GTTGTCCATCTTTAGTAACA+TGG | 0.574052 | 7_1:+5498444 | Msa1006710:three_prime_UTR |
| CATAATAGATCGATGAGCTA+AGG | 0.574520 | 7_1:-5497488 | None:intergenic |
| TGCAAACTTGTTTACAGTGG+CGG | 0.579243 | 7_1:+5496216 | Msa1006710:five_prime_UTR |
| GTACAAGAAAGATGGAGGAG+AGG | 0.579942 | 7_1:+5497865 | Msa1006710:intron |
| AAACTTGTTTACAGTGGCGG+TGG | 0.585550 | 7_1:+5496219 | Msa1006710:five_prime_UTR |
| GGTTGTAGACTAGAGAGAGA+GGG | 0.597418 | 7_1:-5496101 | None:intergenic |
| GAGGACGAGAATATACGTCT+TGG | 0.607032 | 7_1:-5497515 | None:intergenic |
| ATCGATGAGCTAAGGTGACA+TGG | 0.610787 | 7_1:-5497480 | None:intergenic |
| AATGCAGATTACATCAGTAA+GGG | 0.615541 | 7_1:+5497387 | Msa1006710:intron |
| GATTCAGAAAGCGCGTCAAG+AGG | 0.621119 | 7_1:+5497890 | Msa1006710:CDS |
| TTTGGAGTTTGATCCTTCAG+TGG | 0.621707 | 7_1:-5496883 | None:intergenic |
| ATTTGCAAACTTGTTTACAG+TGG | 0.625289 | 7_1:+5496213 | Msa1006710:five_prime_UTR |
| TCAAGAGGAAACTGGTGGCA+AGG | 0.625950 | 7_1:+5497905 | Msa1006710:CDS |
| ACTTATACAATATCATGACT+AGG | 0.634274 | 7_1:-5498606 | None:intergenic |
| AGCTCATCGATCTATTATGG+TGG | 0.653037 | 7_1:+5497492 | Msa1006710:CDS |
| TATCAGTACAAGAAAGATGG+AGG | 0.660585 | 7_1:+5497860 | Msa1006710:intron |
| CCTGAATCTCGTGTACTCTG+AGG | 0.663503 | 7_1:-5497534 | None:intergenic |
| GCGCGTCAAGAGGAAACTGG+TGG | 0.701987 | 7_1:+5497900 | Msa1006710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATAATAACTATAACTAT+AGG | - | chr7_1:5498550-5498569 | None:intergenic | 10.0% |
| !! | AAAATAGAAATTACAATATA+GGG | - | chr7_1:5498729-5498748 | None:intergenic | 10.0% |
| !! | TAAAATAGAAATTACAATAT+AGG | - | chr7_1:5498730-5498749 | None:intergenic | 10.0% |
| !!! | TTGTGTTTTCATTTTTTTTA+TGG | + | chr7_1:5496450-5496469 | Msa1006710:intron | 15.0% |
| !!! | TGTGTTTTCATTTTTTTTAT+GGG | + | chr7_1:5496451-5496470 | Msa1006710:intron | 15.0% |
| !! | GTATAGTTTAATAATCATTA+TGG | + | chr7_1:5496747-5496766 | Msa1006710:intron | 15.0% |
| !! | AATAGCAATTTATTCAAATT+CGG | - | chr7_1:5497042-5497061 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTCATTGTCT+TGG | + | chr7_1:5497354-5497373 | Msa1006710:intron | 15.0% |
| !!! | TTTTTTTTTTTCATTGTCTT+GGG | + | chr7_1:5497355-5497374 | Msa1006710:intron | 15.0% |
| !! | TATATTGTCTAATAAATTTG+TGG | + | chr7_1:5497935-5497954 | Msa1006710:intron | 15.0% |
| !! | AAGTTCTTAAATTTATGATT+CGG | + | chr7_1:5498143-5498162 | Msa1006710:intron | 15.0% |
| !! | AAATAGAAATTACAATATAG+GGG | - | chr7_1:5498728-5498747 | None:intergenic | 15.0% |
| !!! | AAGTAGTTTTGAGATTTTTA+TGG | + | chr7_1:5496798-5496817 | Msa1006710:intron | 20.0% |
| !!! | ATTTTACTAAAACCTCATTT+TGG | - | chr7_1:5496993-5497012 | None:intergenic | 20.0% |
| !! | ATGATATTGTATAAGTTGTA+TGG | + | chr7_1:5498613-5498632 | Msa1006710:three_prime_UTR | 20.0% |
| !! | GGAAAATACTCATAAAATTA+CGG | - | chr7_1:5498767-5498786 | None:intergenic | 20.0% |
| ! | TATGGTTTCGTATATGTATA+TGG | + | chr7_1:5496765-5496784 | Msa1006710:intron | 25.0% |
| !!! | GTTTTGAGATTTTTATGGTT+TGG | + | chr7_1:5496803-5496822 | Msa1006710:intron | 25.0% |
| !!! | GCAAATATTTTTAAGTAGTG+AGG | - | chr7_1:5496944-5496963 | None:intergenic | 25.0% |
| ! | GTTTGTATTATTCCAAAATG+AGG | + | chr7_1:5496978-5496997 | Msa1006710:intron | 25.0% |
| !! | GCTACTATATGTGATTTTAT+CGG | - | chr7_1:5497168-5497187 | None:intergenic | 25.0% |
| ! | CATTAAGATCAACGAAAATA+AGG | - | chr7_1:5497211-5497230 | None:intergenic | 25.0% |
| ! | AACTCAGAACAAAACAAATA+AGG | + | chr7_1:5497422-5497441 | Msa1006710:CDS | 25.0% |
| ! | TGATAAAATGAGTTACTAGA+TGG | + | chr7_1:5497692-5497711 | Msa1006710:intron | 25.0% |
| !!! | GAATAATGGTACTTTTTCTA+CGG | + | chr7_1:5497809-5497828 | Msa1006710:intron | 25.0% |
| !! | TGAAAGCTAATCACATATTT+TGG | - | chr7_1:5498117-5498136 | None:intergenic | 25.0% |
| ! | GATTATGTTAATCATGGATT+TGG | - | chr7_1:5498334-5498353 | None:intergenic | 25.0% |
| !!! | GCATATTTTTGCAGATAAAT+AGG | + | chr7_1:5498405-5498424 | Msa1006710:intron | 25.0% |
| ! | ACTTATACAATATCATGACT+AGG | - | chr7_1:5498609-5498628 | None:intergenic | 25.0% |
| ! | TAAGTTGTATGGTATAGTAT+AGG | + | chr7_1:5498624-5498643 | Msa1006710:three_prime_UTR | 25.0% |
| ! | GTATAGGAATATGTATTATC+AGG | + | chr7_1:5498640-5498659 | Msa1006710:three_prime_UTR | 25.0% |
| !! | TATTATCAGGTACTTTTATG+TGG | + | chr7_1:5498653-5498672 | Msa1006710:three_prime_UTR | 25.0% |
| AAGAGAACAGAAGTTTGAAA+AGG | - | chr7_1:5496142-5496161 | None:intergenic | 30.0% | |
| TGTAAACAAGTTTGCAAATG+AGG | - | chr7_1:5496212-5496231 | None:intergenic | 30.0% | |
| ! | ATTTGCAAACTTGTTTACAG+TGG | + | chr7_1:5496213-5496232 | Msa1006710:five_prime_UTR | 30.0% |
| !! | CAAGTGTTGAAGCAAAAAAA+TGG | + | chr7_1:5496291-5496310 | Msa1006710:exon | 30.0% |
| TGTTGAAGCAAAAAAATGGA+AGG | + | chr7_1:5496295-5496314 | Msa1006710:exon | 30.0% | |
| ! | TATTTTCTCTCCATCTTCTA+AGG | + | chr7_1:5496423-5496442 | Msa1006710:CDS | 30.0% |
| ACACAAAAAACCTTAGAAGA+TGG | - | chr7_1:5496436-5496455 | None:intergenic | 30.0% | |
| !! | TTATGGTTTGGTGATGATTT+AGG | + | chr7_1:5496815-5496834 | Msa1006710:intron | 30.0% |
| AATGCAGATTACATCAGTAA+GGG | + | chr7_1:5497387-5497406 | Msa1006710:intron | 30.0% | |
| TTCTGTCTTGAAGTCTATAT+AGG | - | chr7_1:5497734-5497753 | None:intergenic | 30.0% | |
| AGACAGAATATTAAGCCTAA+TGG | + | chr7_1:5497746-5497765 | Msa1006710:intron | 30.0% | |
| CATTATTCGATCAAAAAGCA+CGG | - | chr7_1:5497797-5497816 | None:intergenic | 30.0% | |
| CTTTATCAGTACAAGAAAGA+TGG | + | chr7_1:5497857-5497876 | Msa1006710:intron | 30.0% | |
| TGTGGTGTAAACATTGTATT+CGG | + | chr7_1:5497953-5497972 | Msa1006710:intron | 30.0% | |
| TTATAGACAAGTTACAGCAT+AGG | - | chr7_1:5498008-5498027 | None:intergenic | 30.0% | |
| !!! | CACATATTTTGGTTACCATT+TGG | - | chr7_1:5498106-5498125 | None:intergenic | 30.0% |
| ! | TGAAAGGTTTGAAATCAACT+TGG | + | chr7_1:5498189-5498208 | Msa1006710:intron | 30.0% |
| ! | TACATACCGAATTACTGATT+TGG | - | chr7_1:5498215-5498234 | None:intergenic | 30.0% |
| ! | GTACATGTAATTTACCGATT+TGG | + | chr7_1:5498232-5498251 | Msa1006710:intron | 30.0% |
| GGTCAAGATTATGTTAATCA+TGG | - | chr7_1:5498340-5498359 | None:intergenic | 30.0% | |
| TACCTAGCAATTTCAAAACA+TGG | - | chr7_1:5498361-5498380 | None:intergenic | 30.0% | |
| TCTTTCCATGTTACTAAAGA+TGG | - | chr7_1:5498452-5498471 | None:intergenic | 30.0% | |
| !!! | ATGCTAGCTTTTGCATTAAT+GGG | + | chr7_1:5498679-5498698 | Msa1006710:three_prime_UTR | 30.0% |
| ACAAACAGAGTGAAGAAAGA+AGG | - | chr7_1:5496169-5496188 | None:intergenic | 35.0% | |
| !!! | TGAGGTTTTTTGCTTTTCCT+AGG | - | chr7_1:5496194-5496213 | None:intergenic | 35.0% |
| GAAGCAAAAAAATGGAAGGA+AGG | + | chr7_1:5496299-5496318 | Msa1006710:exon | 35.0% | |
| ATGGAAGGAAGGAAACAATT+TGG | + | chr7_1:5496310-5496329 | Msa1006710:CDS | 35.0% | |
| TCTTTCACTTCTGAACTCTT+TGG | + | chr7_1:5496355-5496374 | Msa1006710:CDS | 35.0% | |
| AGAGGATTTATGCAAGTCAT+TGG | - | chr7_1:5496383-5496402 | None:intergenic | 35.0% | |
| TTGCATAAATCCTCTTCTTC+TGG | + | chr7_1:5496388-5496407 | Msa1006710:CDS | 35.0% | |
| GTCAAAAATTCCAGAAGAAG+AGG | - | chr7_1:5496401-5496420 | None:intergenic | 35.0% | |
| TTATCTATGAAGCCCAGAAA+CGG | + | chr7_1:5496548-5496567 | Msa1006710:intron | 35.0% | |
| !! | TTGGTGATGATTTAGGTGTT+TGG | + | chr7_1:5496822-5496841 | Msa1006710:intron | 35.0% |
| GAAGGATCAAACTCCAAAAT+CGG | + | chr7_1:5496888-5496907 | Msa1006710:CDS | 35.0% | |
| !!! | TAAACCTTGAGTACCGATTT+TGG | - | chr7_1:5496904-5496923 | None:intergenic | 35.0% |
| ! | ACGTCTGTTATTTGACAACA+CGG | - | chr7_1:5497017-5497036 | None:intergenic | 35.0% |
| AGTAACAGCTATAGCACTAT+AGG | + | chr7_1:5497098-5497117 | Msa1006710:intron | 35.0% | |
| GTAACAGCTATAGCACTATA+GGG | + | chr7_1:5497099-5497118 | Msa1006710:intron | 35.0% | |
| GAAAATAAGGCCAACAAGAA+AGG | - | chr7_1:5497198-5497217 | None:intergenic | 35.0% | |
| CAATGCAGATTACATCAGTA+AGG | + | chr7_1:5497386-5497405 | Msa1006710:intron | 35.0% | |
| TACATCAGTAAGGGAAATGA+TGG | + | chr7_1:5497396-5497415 | Msa1006710:CDS | 35.0% | |
| CATAATAGATCGATGAGCTA+AGG | - | chr7_1:5497491-5497510 | None:intergenic | 35.0% | |
| CTTAGCTCATCGATCTATTA+TGG | + | chr7_1:5497489-5497508 | Msa1006710:CDS | 35.0% | |
| AGATTCAGGATTGAACACTA+TGG | + | chr7_1:5497548-5497567 | Msa1006710:CDS | 35.0% | |
| AACATAACCAACATTTAGCG+CGG | + | chr7_1:5497626-5497645 | Msa1006710:intron | 35.0% | |
| GAATATTAAGCCTAATGGCT+AGG | + | chr7_1:5497751-5497770 | Msa1006710:intron | 35.0% | |
| !! | CGTGCTTTTTGATCGAATAA+TGG | + | chr7_1:5497795-5497814 | Msa1006710:intron | 35.0% |
| TATCAGTACAAGAAAGATGG+AGG | + | chr7_1:5497860-5497879 | Msa1006710:intron | 35.0% | |
| CAAGTTACAGCATAGGAAAT+TGG | - | chr7_1:5498001-5498020 | None:intergenic | 35.0% | |
| ! | GCTGTAACTTGTCTATAAAC+AGG | + | chr7_1:5498010-5498029 | Msa1006710:intron | 35.0% |
| TACGAGTTTCTTGATCCAAA+TGG | + | chr7_1:5498088-5498107 | Msa1006710:intron | 35.0% | |
| ! | AAATTTATGATTCGGCCATG+TGG | + | chr7_1:5498151-5498170 | Msa1006710:intron | 35.0% |
| GATTTCACAAGGACTATGAA+AGG | + | chr7_1:5498173-5498192 | Msa1006710:intron | 35.0% | |
| ACTTGGCCAAATCAGTAATT+CGG | + | chr7_1:5498206-5498225 | Msa1006710:intron | 35.0% | |
| !!! | GACCATGTTTTGAAATTGCT+AGG | + | chr7_1:5498356-5498375 | Msa1006710:intron | 35.0% |
| GTTGTCCATCTTTAGTAACA+TGG | + | chr7_1:5498444-5498463 | Msa1006710:three_prime_UTR | 35.0% | |
| CATATTGTGATTCTGTCGTT+TGG | - | chr7_1:5498525-5498544 | None:intergenic | 35.0% | |
| CTAGGTACATTATTCTGTAC+AGG | - | chr7_1:5498591-5498610 | None:intergenic | 35.0% | |
| !!! | GATGCTAGCTTTTGCATTAA+TGG | + | chr7_1:5498678-5498697 | Msa1006710:three_prime_UTR | 35.0% |
| AAAAGGAGAGACACGTGAAA+AGG | - | chr7_1:5496125-5496144 | None:intergenic | 40.0% | |
| CTTCACTCTGTTTGTTTCCT+AGG | + | chr7_1:5496174-5496193 | Msa1006710:five_prime_UTR | 40.0% | |
| ! | TGCAAACTTGTTTACAGTGG+CGG | + | chr7_1:5496216-5496235 | Msa1006710:five_prime_UTR | 40.0% |
| AATGGAAAAACTGCCACTGA+AGG | + | chr7_1:5496870-5496889 | Msa1006710:CDS | 40.0% | |
| ! | TTTGGAGTTTGATCCTTCAG+TGG | - | chr7_1:5496886-5496905 | None:intergenic | 40.0% |
| AACTCCAAAATCGGTACTCA+AGG | + | chr7_1:5496897-5496916 | Msa1006710:CDS | 40.0% | |
| TTTATCGGTACTGTCAATCG+CGG | - | chr7_1:5497153-5497172 | None:intergenic | 40.0% | |
| AGCTCATCGATCTATTATGG+TGG | + | chr7_1:5497492-5497511 | Msa1006710:CDS | 40.0% | |
| CAGAAATCATCCTAGCCATT+AGG | - | chr7_1:5497764-5497783 | None:intergenic | 40.0% | |
| CTAATGGCTAGGATGATTTC+TGG | + | chr7_1:5497762-5497781 | Msa1006710:intron | 40.0% | |
| !!! | ATGGTACTTTTTCTACGGCT+CGG | + | chr7_1:5497814-5497833 | Msa1006710:intron | 40.0% |
| ! | TTAAAAGAGTACACTTGCCG+AGG | + | chr7_1:5498045-5498064 | Msa1006710:intron | 40.0% |
| ! | TAAAAGAGTACACTTGCCGA+GGG | + | chr7_1:5498046-5498065 | Msa1006710:intron | 40.0% |
| CAAGAAACTCGTATACCTTG+AGG | - | chr7_1:5498081-5498100 | None:intergenic | 40.0% | |
| TAGTCCTTGTGAAATCCACA+TGG | - | chr7_1:5498169-5498188 | None:intergenic | 40.0% | |
| TGGCATCAGGAAATCCAAAT+CGG | - | chr7_1:5498249-5498268 | None:intergenic | 40.0% | |
| GCGTAAATTTCCCAATTGCA+TGG | - | chr7_1:5498277-5498296 | None:intergenic | 40.0% | |
| ATGTGCGATTACTTGACTAC+AGG | + | chr7_1:5498304-5498323 | Msa1006710:intron | 40.0% | |
| TGTGCGATTACTTGACTACA+GGG | + | chr7_1:5498305-5498324 | Msa1006710:intron | 40.0% | |
| TGCAGTGACAAAGTTGTGAA+TGG | + | chr7_1:5498482-5498501 | Msa1006710:three_prime_UTR | 40.0% | |
| !!! | GGGTGATGCTCTATTTTTAG+TGG | + | chr7_1:5498699-5498718 | Msa1006710:three_prime_UTR | 40.0% |
| GGTTGTAGACTAGAGAGAGA+GGG | - | chr7_1:5496104-5496123 | None:intergenic | 45.0% | |
| AGGTTGTAGACTAGAGAGAG+AGG | - | chr7_1:5496105-5496124 | None:intergenic | 45.0% | |
| ! | AAACTTGTTTACAGTGGCGG+TGG | + | chr7_1:5496219-5496238 | Msa1006710:five_prime_UTR | 45.0% |
| GACATGTATGTGTCGTGTCA+CGG | - | chr7_1:5496673-5496692 | None:intergenic | 45.0% | |
| GTGACACGACACATACATGT+CGG | + | chr7_1:5496672-5496691 | Msa1006710:intron | 45.0% | |
| CTGTCAATCGCGGAAAATAG+TGG | - | chr7_1:5497143-5497162 | None:intergenic | 45.0% | |
| AGCACTAGCACCTTTCTTGT+TGG | + | chr7_1:5497185-5497204 | Msa1006710:intron | 45.0% | |
| ATCGATGAGCTAAGGTGACA+TGG | - | chr7_1:5497483-5497502 | None:intergenic | 45.0% | |
| GAGGACGAGAATATACGTCT+TGG | - | chr7_1:5497518-5497537 | None:intergenic | 45.0% | |
| GAAATCACCGCGCTAAATGT+TGG | - | chr7_1:5497636-5497655 | None:intergenic | 45.0% | |
| GTACAAGAAAGATGGAGGAG+AGG | + | chr7_1:5497865-5497884 | Msa1006710:intron | 45.0% | |
| ! | CTTGAGGAGCATATTTCCCT+CGG | - | chr7_1:5498065-5498084 | None:intergenic | 45.0% |
| ! | TTGTGATTCTGTCGTTTGGC+TGG | - | chr7_1:5498521-5498540 | None:intergenic | 45.0% |
| TGAAGCCCAGAAACGGACAT+CGG | + | chr7_1:5496555-5496574 | Msa1006710:intron | 50.0% | |
| ATCGAGACACGCCTAATCTG+AGG | + | chr7_1:5496697-5496716 | Msa1006710:intron | 50.0% | |
| GCACGAACACTCCTCAGATT+AGG | - | chr7_1:5496711-5496730 | None:intergenic | 50.0% | |
| TCTCTGCGCTCAGCAATGAA+TGG | + | chr7_1:5496852-5496871 | Msa1006710:CDS | 50.0% | |
| CCTGAATCTCGTGTACTCTG+AGG | - | chr7_1:5497537-5497556 | None:intergenic | 50.0% | |
| CCTCAGAGTACACGAGATTC+AGG | + | chr7_1:5497534-5497553 | Msa1006710:CDS | 50.0% | |
| ! | GATTCAGAAAGCGCGTCAAG+AGG | + | chr7_1:5497890-5497909 | Msa1006710:CDS | 50.0% |
| AAAGCGCGTCAAGAGGAAAC+TGG | + | chr7_1:5497897-5497916 | Msa1006710:CDS | 50.0% | |
| TCAAGAGGAAACTGGTGGCA+AGG | + | chr7_1:5497905-5497924 | Msa1006710:CDS | 50.0% | |
| CGAGGGAAATATGCTCCTCA+AGG | + | chr7_1:5498063-5498082 | Msa1006710:intron | 50.0% | |
| TCGGCCATGTGGATTTCACA+AGG | + | chr7_1:5498162-5498181 | Msa1006710:intron | 50.0% | |
| ATGCCACGAGACCATGCAAT+TGG | + | chr7_1:5498263-5498282 | Msa1006710:intron | 50.0% | |
| TGCCACGAGACCATGCAATT+GGG | + | chr7_1:5498264-5498283 | Msa1006710:intron | 50.0% | |
| TTCCCAATTGCATGGTCTCG+TGG | - | chr7_1:5498269-5498288 | None:intergenic | 50.0% | |
| CGTGTCCGATGTCCGTTTCT+GGG | - | chr7_1:5496563-5496582 | None:intergenic | 55.0% | |
| TCGTGTCCGATGTCCGTTTC+TGG | - | chr7_1:5496564-5496583 | None:intergenic | 55.0% | |
| TTGCATGGTCTCGTGGCATC+AGG | - | chr7_1:5498262-5498281 | None:intergenic | 55.0% | |
| GCGCGTCAAGAGGAAACTGG+TGG | + | chr7_1:5497900-5497919 | Msa1006710:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 5496095 | 5498791 | 5496095 | ID=Msa1006710;Name=Msa1006710 |
| chr7_1 | mRNA | 5496095 | 5498791 | 5496095 | ID=Msa1006710-mRNA-1;Parent=Msa1006710;Name=Msa1006710-mRNA-1;_AED=0.19;_eAED=0.19;_QI=215|0.75|1|1|1|1|5|365|153 |
| chr7_1 | exon | 5496095 | 5496444 | 5496095 | ID=Msa1006710-mRNA-1:exon:1797;Parent=Msa1006710-mRNA-1 |
| chr7_1 | exon | 5496837 | 5496918 | 5496837 | ID=Msa1006710-mRNA-1:exon:1798;Parent=Msa1006710-mRNA-1 |
| chr7_1 | exon | 5497394 | 5497569 | 5497394 | ID=Msa1006710-mRNA-1:exon:1799;Parent=Msa1006710-mRNA-1 |
| chr7_1 | exon | 5497866 | 5497926 | 5497866 | ID=Msa1006710-mRNA-1:exon:1800;Parent=Msa1006710-mRNA-1 |
| chr7_1 | exon | 5498419 | 5498791 | 5498419 | ID=Msa1006710-mRNA-1:exon:1801;Parent=Msa1006710-mRNA-1 |
| chr7_1 | five_prime_UTR | 5496095 | 5496309 | 5496095 | ID=Msa1006710-mRNA-1:five_prime_utr;Parent=Msa1006710-mRNA-1 |
| chr7_1 | CDS | 5496310 | 5496444 | 5496310 | ID=Msa1006710-mRNA-1:cds;Parent=Msa1006710-mRNA-1 |
| chr7_1 | CDS | 5496837 | 5496918 | 5496837 | ID=Msa1006710-mRNA-1:cds;Parent=Msa1006710-mRNA-1 |
| chr7_1 | CDS | 5497394 | 5497569 | 5497394 | ID=Msa1006710-mRNA-1:cds;Parent=Msa1006710-mRNA-1 |
| chr7_1 | CDS | 5497866 | 5497926 | 5497866 | ID=Msa1006710-mRNA-1:cds;Parent=Msa1006710-mRNA-1 |
| chr7_1 | CDS | 5498419 | 5498426 | 5498419 | ID=Msa1006710-mRNA-1:cds;Parent=Msa1006710-mRNA-1 |
| chr7_1 | three_prime_UTR | 5498427 | 5498791 | 5498427 | ID=Msa1006710-mRNA-1:three_prime_utr;Parent=Msa1006710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
