Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1448620 | A0A072U1L2 | 78.107 | 169 | 25 | 3 | 1 | 169 | 1 | 157 | 5.83e-73 | 225 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004840 | Msa1448620 | 0.850970 | 1.202735e-60 | -8.615850e-47 |
| Msa0020390 | Msa1448620 | 0.807260 | 5.514644e-50 | -8.615850e-47 |
| Msa0023000 | Msa1448620 | 0.815057 | 1.123335e-51 | -8.615850e-47 |
| Msa0051860 | Msa1448620 | 0.845091 | 5.041616e-59 | -8.615850e-47 |
| Msa0065950 | Msa1448620 | 0.817678 | 2.911625e-52 | -8.615850e-47 |
| Msa0096980 | Msa1448620 | 0.847413 | 1.174967e-59 | -8.615850e-47 |
| Msa0115390 | Msa1448620 | 0.804769 | 1.842610e-49 | -8.615850e-47 |
| Msa1348850 | Msa1448620 | 0.803365 | 3.609888e-49 | -8.615850e-47 |
| Msa1359270 | Msa1448620 | 0.803690 | 3.090927e-49 | -8.615850e-47 |
| Msa1440190 | Msa1448620 | 0.800013 | 1.758902e-48 | -8.615850e-47 |
| Msa1448620 | Msa1448630 | 0.870100 | 1.883325e-66 | -8.615850e-47 |
| Msa1448620 | Msa1449750 | 0.806238 | 9.065646e-50 | -8.615850e-47 |
| Msa1448620 | Msa1460320 | -0.805659 | 1.199531e-49 | -8.615850e-47 |
| Msa0604290 | Msa1448620 | 0.807039 | 6.139999e-50 | -8.615850e-47 |
| Msa0631350 | Msa1448620 | 0.817558 | 3.097916e-52 | -8.615850e-47 |
| Msa0650190 | Msa1448620 | 0.810688 | 1.017754e-50 | -8.615850e-47 |
| Msa0769980 | Msa1448620 | 0.807002 | 6.253884e-50 | -8.615850e-47 |
| Msa0793380 | Msa1448620 | 0.825353 | 4.909218e-54 | -8.615850e-47 |
| Msa0833310 | Msa1448620 | 0.822398 | 2.420278e-53 | -8.615850e-47 |
| Msa0121870 | Msa1448620 | 0.802502 | 5.441000e-49 | -8.615850e-47 |
| Msa0137820 | Msa1448620 | 0.807979 | 3.879157e-50 | -8.615850e-47 |
| Msa0140110 | Msa1448620 | 0.801404 | 9.148946e-49 | -8.615850e-47 |
| Msa0145010 | Msa1448620 | 0.850941 | 1.226243e-60 | -8.615850e-47 |
| Msa0189520 | Msa1448620 | 0.812081 | 5.072401e-51 | -8.615850e-47 |
| Msa0194480 | Msa1448620 | 0.818591 | 1.809626e-52 | -8.615850e-47 |
| Msa1272570 | Msa1448620 | 0.805209 | 1.490947e-49 | -8.615850e-47 |
| Msa1272620 | Msa1448620 | 0.803258 | 3.798950e-49 | -8.615850e-47 |
| Msa0415430 | Msa1448620 | 0.800405 | 1.463892e-48 | -8.615850e-47 |
| Msa1006710 | Msa1448620 | 0.915228 | 7.549657e-85 | -8.615850e-47 |
| Msa1023180 | Msa1448620 | 0.872269 | 3.621850e-67 | -8.615850e-47 |
| Msa1043050 | Msa1448620 | 0.864196 | 1.447131e-64 | -8.615850e-47 |
| Msa1043060 | Msa1448620 | 0.804325 | 2.280545e-49 | -8.615850e-47 |
| Msa0255930 | Msa1448620 | 0.807633 | 4.594862e-50 | -8.615850e-47 |
| Msa0256330 | Msa1448620 | 0.824485 | 7.867462e-54 | -8.615850e-47 |
| Msa0271360 | Msa1448620 | 0.820655 | 6.114078e-53 | -8.615850e-47 |
| Msa0274040 | Msa1448620 | -0.811856 | 5.677937e-51 | -8.615850e-47 |
| Msa0284820 | Msa1448620 | 0.818810 | 1.613566e-52 | -8.615850e-47 |
| Msa0295330 | Msa1448620 | 0.811089 | 8.335776e-51 | -8.615850e-47 |
| Msa1150710 | Msa1448620 | 0.866498 | 2.729256e-65 | -8.615850e-47 |
| Msa1182690 | Msa1448620 | 0.817121 | 3.886206e-52 | -8.615850e-47 |
| Msa1206270 | Msa1448620 | 0.816604 | 5.077349e-52 | -8.615850e-47 |
| Msa1206290 | Msa1448620 | 0.819547 | 1.096523e-52 | -8.615850e-47 |
| Msa0534900 | Msa1448620 | 0.843709 | 1.185854e-58 | -8.615850e-47 |
| Msa0542290 | Msa1448620 | 0.805374 | 1.377041e-49 | -8.615850e-47 |
| Msa0542560 | Msa1448620 | 0.802458 | 5.556839e-49 | -8.615850e-47 |
| Msa0557480 | Msa1448620 | 0.802720 | 4.907920e-49 | -8.615850e-47 |
| Msa0588240 | Msa1448620 | 0.807668 | 4.517478e-50 | -8.615850e-47 |
| Msa0937330 | Msa1448620 | 0.805284 | 1.437742e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1448620 | MtrunA17_Chr7g0240431 | 76.647 | 167 | 27 | 3 | 1 | 167 | 1 | 155 | 3.19e-73 | 217 |
| Msa1448620 | MtrunA17_Chr4g0008731 | 46.471 | 170 | 73 | 6 | 1 | 167 | 1 | 155 | 8.05e-34 | 117 |
| Msa1448620 | MtrunA17_Chr4g0008721 | 40.964 | 166 | 77 | 6 | 1 | 164 | 1 | 147 | 3.01e-24 | 92.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1448620 | AT5G02020.1 | 45.143 | 175 | 61 | 5 | 1 | 167 | 1 | 148 | 2.29e-27 | 100 |
| Msa1448620 | AT5G59080.2 | 36.416 | 173 | 65 | 3 | 1 | 167 | 1 | 134 | 3.60e-18 | 76.6 |
| Msa1448620 | AT5G59080.1 | 36.416 | 173 | 65 | 3 | 1 | 167 | 1 | 134 | 3.60e-18 | 76.6 |
| Msa1448620 | AT2G39855.2 | 38.514 | 148 | 57 | 6 | 21 | 164 | 21 | 138 | 1.03e-17 | 75.5 |
| Msa1448620 | AT2G39855.4 | 38.514 | 148 | 57 | 6 | 21 | 164 | 21 | 138 | 1.03e-17 | 75.5 |
| Msa1448620 | AT2G39855.3 | 62.712 | 59 | 16 | 2 | 107 | 164 | 60 | 113 | 4.93e-16 | 70.5 |
| Msa1448620 | AT3G55646.1 | 50.000 | 84 | 36 | 3 | 84 | 167 | 68 | 145 | 1.46e-13 | 64.7 |
| Msa1448620 | AT3G46880.2 | 32.143 | 168 | 60 | 4 | 1 | 167 | 1 | 115 | 1.77e-12 | 61.2 |
Find 72 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAGCTAATCACATATTT+TGG | 0.162954 | tig0032236:+7863 | None:intergenic |
| TCAACCTTGAGTAGCAATTT+TGG | 0.163510 | tig0032236:+9067 | None:intergenic |
| AAAATAGAAATTACAATATA+GGG | 0.223199 | tig0032236:+7253 | None:intergenic |
| GATTATGTTAATCATGGATT+TGG | 0.251020 | tig0032236:+7646 | None:intergenic |
| ATGCATATTTGCAGATAAAT+AGG | 0.258495 | tig0032236:-7574 | Msa1448620:three_prime_UTR |
| TCTTTCACTTCTGAACTCTT+TGG | 0.272651 | tig0032236:-9613 | Msa1448620:CDS |
| TTGCATAAATCCTCTTCTTC+TGG | 0.281952 | tig0032236:-9580 | Msa1448620:CDS |
| TAAAATAGAAATTACAATAT+AGG | 0.292817 | tig0032236:+7252 | None:intergenic |
| CTTAGCTCATCGATCTATTA+TGG | 0.302082 | tig0032236:-8489 | Msa1448620:CDS |
| GTACATGTAATTTACCGATT+TGG | 0.306305 | tig0032236:-7745 | Msa1448620:three_prime_UTR |
| ATGGAAGGAAGGAAACAATT+TGG | 0.335652 | tig0032236:-9658 | Msa1448620:CDS |
| TACATACTGAATTACTGATT+TGG | 0.358365 | tig0032236:+7765 | None:intergenic |
| TGTGGTGTAAACATTGTATT+CGG | 0.360585 | tig0032236:-8024 | Msa1448620:three_prime_UTR |
| ATTGTGATTCTGTCGTTTGC+TGG | 0.374761 | tig0032236:+7460 | None:intergenic |
| CCTCAGAGTACACAAGATTC+AGG | 0.378048 | tig0032236:-8444 | Msa1448620:CDS |
| ATGCCACGAGACCATGCAAT+TGG | 0.395040 | tig0032236:-7714 | Msa1448620:three_prime_UTR |
| AAGTTCTTAAATTTATGATT+CGG | 0.395428 | tig0032236:-7834 | Msa1448620:three_prime_UTR |
| AGAGGATTTATGCAAGTCAT+TGG | 0.396393 | tig0032236:+9588 | None:intergenic |
| GTATAGGAATATGTATTATC+AGG | 0.403619 | tig0032236:-7339 | Msa1448620:three_prime_UTR |
| AACTCAGAACAAAACAAATA+AGG | 0.412533 | tig0032236:-8556 | Msa1448620:CDS |
| GCTGTAACTTGTCTATAAAC+AGG | 0.413650 | tig0032236:-7967 | Msa1448620:three_prime_UTR |
| GGTCAAGATTATGTTAATCA+TGG | 0.417727 | tig0032236:+7640 | None:intergenic |
| CTTTATCAGTACAAGAAAGA+TGG | 0.423454 | tig0032236:-8120 | Msa1448620:intron |
| GGAAAATACTCATAAAATTA+CGG | 0.427464 | tig0032236:+7215 | None:intergenic |
| TATATAATAACTATAACTAT+AGG | 0.439201 | tig0032236:+7432 | None:intergenic |
| TATATTGTCTAATAAATTTG+TGG | 0.440326 | tig0032236:-8042 | Msa1448620:exon |
| TTGCATGGTCTCGTGGCATC+AGG | 0.445876 | tig0032236:+7718 | None:intergenic |
| TCTCTGCGCTCACCAATGAA+TGG | 0.446213 | tig0032236:-9117 | Msa1448620:CDS |
| ATGATATTGTATAAGTTGTA+TGG | 0.453106 | tig0032236:-7366 | Msa1448620:three_prime_UTR |
| CTCTGCGCTCACCAATGAAT+GGG | 0.458318 | tig0032236:-9116 | Msa1448620:CDS |
| TTTGTGATGATTTAGGTGTT+TGG | 0.464470 | tig0032236:-9147 | Msa1448620:intron |
| CAAGTTACAGCATAGGAAAT+CGG | 0.478010 | tig0032236:+7979 | None:intergenic |
| TACGAGTTTCTTGATCCAAA+TGG | 0.479735 | tig0032236:-7889 | Msa1448620:three_prime_UTR |
| CAATGCAGATTACATCAGTA+AGG | 0.491806 | tig0032236:-8592 | Msa1448620:intron |
| TACATCAGTAAGGGAAATGA+TGG | 0.503771 | tig0032236:-8582 | Msa1448620:CDS |
| CTAGGTACATTATTCTGTAC+AGG | 0.510854 | tig0032236:+7391 | None:intergenic |
| TAAGTTGTATGGTATAGTAT+AGG | 0.514490 | tig0032236:-7355 | Msa1448620:three_prime_UTR |
| ATGTGCGATTACTTGACTAC+AGG | 0.522414 | tig0032236:-7673 | Msa1448620:three_prime_UTR |
| AAAGCGCGTCAAGAGGAAAC+TGG | 0.522936 | tig0032236:-8080 | Msa1448620:CDS |
| TGGCATCAGGAAATCCAAAT+CGG | 0.530531 | tig0032236:+7731 | None:intergenic |
| TGCCACGAGACCATGCAATT+GGG | 0.535087 | tig0032236:-7713 | Msa1448620:three_prime_UTR |
| AGATTCAGGATTGAACACTA+TGG | 0.537760 | tig0032236:-8430 | Msa1448620:intron |
| CTTGAGGAGCATATTTCCCT+CGG | 0.551233 | tig0032236:+7915 | None:intergenic |
| TTCCCAATTGCATGGTCTCG+TGG | 0.551631 | tig0032236:+7711 | None:intergenic |
| GATTTCACAAGGACTATGAA+AGG | 0.555552 | tig0032236:-7804 | Msa1448620:three_prime_UTR |
| AACTCCAAAATTGCTACTCA+AGG | 0.556191 | tig0032236:-9071 | Msa1448620:intron |
| TGCAGTGACAAAGTTGTGAA+TGG | 0.565227 | tig0032236:-7496 | Msa1448620:three_prime_UTR |
| TTAAAAGAGTACACTTGCCG+AGG | 0.565396 | tig0032236:-7932 | Msa1448620:three_prime_UTR |
| AAATAGAAATTACAATATAG+GGG | 0.566541 | tig0032236:+7254 | None:intergenic |
| TGAAAGGTTTGAAATCAACT+TGG | 0.571052 | tig0032236:-7788 | Msa1448620:three_prime_UTR |
| CATAATAGATCGATGAGCTA+AGG | 0.574520 | tig0032236:+8490 | None:intergenic |
| GCGTAAATTTCCCAATTGCA+TGG | 0.585385 | tig0032236:+7703 | None:intergenic |
| TATCTAGCAGTTTCAAAACA+TGG | 0.590769 | tig0032236:+7619 | None:intergenic |
| GATTCAGAAAGCGCGTCAAG+AGG | 0.595421 | tig0032236:-8087 | Msa1448620:CDS |
| CGAGGGAAATATGCTCCTCA+AGG | 0.606604 | tig0032236:-7914 | Msa1448620:three_prime_UTR |
| GAGGACGAGAATATACGTCT+TGG | 0.607032 | tig0032236:+8463 | None:intergenic |
| TAAAAGAGTACACTTGCCGA+GGG | 0.607782 | tig0032236:-7931 | Msa1448620:three_prime_UTR |
| ATCGATGAGCTAAGGTGACA+TGG | 0.610787 | tig0032236:+8498 | None:intergenic |
| AATGCAGATTACATCAGTAA+GGG | 0.615541 | tig0032236:-8591 | Msa1448620:intron |
| TTTGGAGTTTGATCCTTCAG+TGG | 0.621398 | tig0032236:+9085 | None:intergenic |
| TTATAGACAAGTTACAGCAT+AGG | 0.621698 | tig0032236:+7972 | None:intergenic |
| TCAAGAGGAAACTGGTGGCA+AGG | 0.625950 | tig0032236:-8072 | Msa1448620:CDS |
| ACTTATACAATATCATGACT+AGG | 0.634274 | tig0032236:+7373 | None:intergenic |
| TGTGCGATTACTTGACTACA+GGG | 0.637158 | tig0032236:-7672 | Msa1448620:three_prime_UTR |
| AAATTTATGATTCGGCCATG+TGG | 0.649001 | tig0032236:-7826 | Msa1448620:three_prime_UTR |
| TCGGCCATGTGGATTTCACA+AGG | 0.649464 | tig0032236:-7815 | Msa1448620:three_prime_UTR |
| AGCTCATCGATCTATTATGG+TGG | 0.653037 | tig0032236:-8486 | Msa1448620:CDS |
| TATCAGTACAAGAAAGATGG+AGG | 0.660585 | tig0032236:-8117 | Msa1448620:intron |
| CAAGAAACTCGTATACCTTG+AGG | 0.686916 | tig0032236:+7899 | None:intergenic |
| CCTGAATCTTGTGTACTCTG+AGG | 0.691423 | tig0032236:+8444 | None:intergenic |
| GCGCGTCAAGAGGAAACTGG+TGG | 0.701987 | tig0032236:-8077 | Msa1448620:CDS |
| TAGTCCTTGTGAAATCCACA+TGG | 0.703311 | tig0032236:+7811 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATAATAACTATAACTAT+AGG | + | tig0032236:9441-9460 | None:intergenic | 10.0% |
| !! | AAAATAGAAATTACAATATA+GGG | + | tig0032236:9620-9639 | None:intergenic | 10.0% |
| !! | TAAAATAGAAATTACAATAT+AGG | + | tig0032236:9621-9640 | None:intergenic | 10.0% |
| !!! | TTGTGTTTTCATTTTTTTTA+TGG | - | tig0032236:7352-7371 | Msa1448620:three_prime_UTR | 15.0% |
| !!! | TGTGTTTTCATTTTTTTTAT+GGG | - | tig0032236:7353-7372 | Msa1448620:three_prime_UTR | 15.0% |
| !! | GTATAGTTTAATAATCATTA+TGG | - | tig0032236:7649-7668 | Msa1448620:three_prime_UTR | 15.0% |
| !!! | ATTTTATTAAAACCTCATTT+TGG | + | tig0032236:7894-7913 | None:intergenic | 15.0% |
| !! | TATATTGTCTAATAAATTTG+TGG | - | tig0032236:8828-8847 | Msa1448620:intron | 15.0% |
| !! | AAGTTCTTAAATTTATGATT+CGG | - | tig0032236:9036-9055 | Msa1448620:intron | 15.0% |
| !! | AAATAGAAATTACAATATAG+GGG | + | tig0032236:9619-9638 | None:intergenic | 15.0% |
| !!! | AAGTTGTTTTGAGATTTTTA+TGG | - | tig0032236:7700-7719 | Msa1448620:three_prime_UTR | 20.0% |
| !! | GCAAATATTTATAAATAGAG+AGG | + | tig0032236:7845-7864 | None:intergenic | 20.0% |
| !!! | GAAGTAGTATAGTTTTTATA+AGG | - | tig0032236:8215-8234 | Msa1448620:intron | 20.0% |
| !! | ATGATATTGTATAAGTTGTA+TGG | - | tig0032236:9504-9523 | Msa1448620:intron | 20.0% |
| !! | GGAAAATACTCATAAAATTA+CGG | + | tig0032236:9658-9677 | None:intergenic | 20.0% |
| ! | TATGGTTTCGTATATGTATA+TGG | - | tig0032236:7667-7686 | Msa1448620:three_prime_UTR | 25.0% |
| !! | TTTATGGTTTGTGATGATTT+AGG | - | tig0032236:7716-7735 | Msa1448620:three_prime_UTR | 25.0% |
| ! | GTTTGTATTATTCCAAAATG+AGG | - | tig0032236:7879-7898 | Msa1448620:three_prime_UTR | 25.0% |
| !! | AATAGCGATTTGTTCAAATT+CGG | + | tig0032236:7943-7962 | None:intergenic | 25.0% |
| !!! | TGCTTTTTTTTTCATTGTCT+TGG | - | tig0032236:8246-8265 | Msa1448620:intron | 25.0% |
| !!! | GCTTTTTTTTTCATTGTCTT+GGG | - | tig0032236:8247-8266 | Msa1448620:intron | 25.0% |
| ! | AACTCAGAACAAAACAAATA+AGG | - | tig0032236:8314-8333 | Msa1448620:intron | 25.0% |
| ! | TGATAAAATGAGTTACTAGA+TGG | - | tig0032236:8584-8603 | Msa1448620:CDS | 25.0% |
| !!! | ACACTTTTTGAATCGAAAAA+TGG | - | tig0032236:8688-8707 | Msa1448620:intron | 25.0% |
| !! | GAAAAATGGTATTTTCTCTA+TGG | - | tig0032236:8702-8721 | Msa1448620:intron | 25.0% |
| !! | TGAAAGCTAATCACATATTT+TGG | + | tig0032236:9010-9029 | None:intergenic | 25.0% |
| !! | TACATACTGAATTACTGATT+TGG | + | tig0032236:9108-9127 | None:intergenic | 25.0% |
| ! | GATTATGTTAATCATGGATT+TGG | + | tig0032236:9227-9246 | None:intergenic | 25.0% |
| ! | ATGCATATTTGCAGATAAAT+AGG | - | tig0032236:9296-9315 | Msa1448620:intron | 25.0% |
| ! | ACTTATACAATATCATGACT+AGG | + | tig0032236:9500-9519 | None:intergenic | 25.0% |
| ! | TAAGTTGTATGGTATAGTAT+AGG | - | tig0032236:9515-9534 | Msa1448620:intron | 25.0% |
| ! | GTATAGGAATATGTATTATC+AGG | - | tig0032236:9531-9550 | Msa1448620:CDS | 25.0% |
| !! | TATTATCAGGTACTTTTATG+TGG | - | tig0032236:9544-9563 | Msa1448620:CDS | 25.0% |
| ! | TATTTTCTCTCCATCTTCTA+AGG | - | tig0032236:7325-7344 | Msa1448620:three_prime_UTR | 30.0% |
| ACACAAAAAACCTTAGAAGA+TGG | + | tig0032236:7338-7357 | None:intergenic | 30.0% | |
| TTTGTGATGATTTAGGTGTT+TGG | - | tig0032236:7723-7742 | Msa1448620:three_prime_UTR | 30.0% | |
| !! | GAGGTTTTAATAAAATCCTG+TGG | - | tig0032236:7898-7917 | Msa1448620:three_prime_UTR | 30.0% |
| ACATTGAGATCAAGGAAAAT+AGG | + | tig0032236:8109-8128 | None:intergenic | 30.0% | |
| AATGCAGATTACATCAGTAA+GGG | - | tig0032236:8279-8298 | Msa1448620:intron | 30.0% | |
| AACATAACAAACATTTAGCG+CGG | - | tig0032236:8518-8537 | Msa1448620:CDS | 30.0% | |
| TTCTGTCTTGAAGTCTATAT+AGG | + | tig0032236:8626-8645 | None:intergenic | 30.0% | |
| CTTTATCAGTACAAGAAAGA+TGG | - | tig0032236:8750-8769 | Msa1448620:intron | 30.0% | |
| TGTGGTGTAAACATTGTATT+CGG | - | tig0032236:8846-8865 | Msa1448620:intron | 30.0% | |
| TTATAGACAAGTTACAGCAT+AGG | + | tig0032236:8901-8920 | None:intergenic | 30.0% | |
| !!! | CACATATTTTGGTTACCATT+TGG | + | tig0032236:8999-9018 | None:intergenic | 30.0% |
| ! | TGAAAGGTTTGAAATCAACT+TGG | - | tig0032236:9082-9101 | Msa1448620:CDS | 30.0% |
| ! | GTACATGTAATTTACCGATT+TGG | - | tig0032236:9125-9144 | Msa1448620:CDS | 30.0% |
| GGTCAAGATTATGTTAATCA+TGG | + | tig0032236:9233-9252 | None:intergenic | 30.0% | |
| TATCTAGCAGTTTCAAAACA+TGG | + | tig0032236:9254-9273 | None:intergenic | 30.0% | |
| ! | TTGTTCATCTTTTAGCAACA+TGG | - | tig0032236:9336-9355 | Msa1448620:intron | 30.0% |
| !!! | ATGCTAGCTTTTGCATTAAT+GGG | - | tig0032236:9570-9589 | Msa1448620:CDS | 30.0% |
| ATGGAAGGAAGGAAACAATT+TGG | - | tig0032236:7212-7231 | Msa1448620:three_prime_UTR | 35.0% | |
| TCTTTCACTTCTGAACTCTT+TGG | - | tig0032236:7257-7276 | Msa1448620:three_prime_UTR | 35.0% | |
| AGAGGATTTATGCAAGTCAT+TGG | + | tig0032236:7285-7304 | None:intergenic | 35.0% | |
| TTGCATAAATCCTCTTCTTC+TGG | - | tig0032236:7290-7309 | Msa1448620:three_prime_UTR | 35.0% | |
| GTCAAAAATTCCAGAAGAAG+AGG | + | tig0032236:7303-7322 | None:intergenic | 35.0% | |
| TTATCTATGAAGCCCAGAAA+CGG | - | tig0032236:7450-7469 | Msa1448620:three_prime_UTR | 35.0% | |
| AACTCCAAAATTGCTACTCA+AGG | - | tig0032236:7799-7818 | Msa1448620:three_prime_UTR | 35.0% | |
| ! | TCAACCTTGAGTAGCAATTT+TGG | + | tig0032236:7806-7825 | None:intergenic | 35.0% |
| AGTAACAGCTATAGCACTAT+AGG | - | tig0032236:7998-8017 | Msa1448620:three_prime_UTR | 35.0% | |
| GTAACAGCTATAGCACTATA+GGG | - | tig0032236:7999-8018 | Msa1448620:three_prime_UTR | 35.0% | |
| TTTATCGGTATTGTCAATCG+CGG | + | tig0032236:8053-8072 | None:intergenic | 35.0% | |
| ! | GTGCTACTATGTGACTTTAT+CGG | + | tig0032236:8068-8087 | None:intergenic | 35.0% |
| CACTCTAAACATTGAGATCA+AGG | + | tig0032236:8117-8136 | None:intergenic | 35.0% | |
| CAATGCAGATTACATCAGTA+AGG | - | tig0032236:8278-8297 | Msa1448620:intron | 35.0% | |
| TACATCAGTAAGGGAAATGA+TGG | - | tig0032236:8288-8307 | Msa1448620:intron | 35.0% | |
| CATAATAGATCGATGAGCTA+AGG | + | tig0032236:8383-8402 | None:intergenic | 35.0% | |
| CTTAGCTCATCGATCTATTA+TGG | - | tig0032236:8381-8400 | Msa1448620:intron | 35.0% | |
| AGATTCAGGATTGAACACTA+TGG | - | tig0032236:8440-8459 | Msa1448620:CDS | 35.0% | |
| AGACAGAATATTGAGCCTAA+TGG | - | tig0032236:8638-8657 | Msa1448620:intron | 35.0% | |
| ! | ATGGTATTTTCTCTATGGCT+CGG | - | tig0032236:8707-8726 | Msa1448620:intron | 35.0% |
| TATCAGTACAAGAAAGATGG+AGG | - | tig0032236:8753-8772 | Msa1448620:intron | 35.0% | |
| CAAGTTACAGCATAGGAAAT+CGG | + | tig0032236:8894-8913 | None:intergenic | 35.0% | |
| ! | GCTGTAACTTGTCTATAAAC+AGG | - | tig0032236:8903-8922 | Msa1448620:intron | 35.0% |
| TACGAGTTTCTTGATCCAAA+TGG | - | tig0032236:8981-9000 | Msa1448620:intron | 35.0% | |
| ! | AAATTTATGATTCGGCCATG+TGG | - | tig0032236:9044-9063 | Msa1448620:intron | 35.0% |
| GATTTCACAAGGACTATGAA+AGG | - | tig0032236:9066-9085 | Msa1448620:intron | 35.0% | |
| ! | TCATCTTTTAGCAACATGGA+AGG | - | tig0032236:9340-9359 | Msa1448620:intron | 35.0% |
| CTAGGTACATTATTCTGTAC+AGG | + | tig0032236:9482-9501 | None:intergenic | 35.0% | |
| !!! | GATGCTAGCTTTTGCATTAA+TGG | - | tig0032236:9569-9588 | Msa1448620:CDS | 35.0% |
| ! | TGGCAGTTTTTCCCATTCAT+TGG | + | tig0032236:7768-7787 | None:intergenic | 40.0% |
| ! | TTTGGAGTTTGATCCTTCAG+TGG | + | tig0032236:7788-7807 | None:intergenic | 40.0% |
| TTGTCAATCGCGGAAAATAG+TGG | + | tig0032236:8043-8062 | None:intergenic | 40.0% | |
| GGAAAATAGGCCAACAAGAA+AGG | + | tig0032236:8096-8115 | None:intergenic | 40.0% | |
| AGCTCATCGATCTATTATGG+TGG | - | tig0032236:8384-8403 | Msa1448620:intron | 40.0% | |
| GAATATTGAGCCTAATGGCT+AGG | - | tig0032236:8643-8662 | Msa1448620:intron | 40.0% | |
| CAGAAATCATCCTAGCCATT+AGG | + | tig0032236:8656-8675 | None:intergenic | 40.0% | |
| TGGCTAGGATGATTTCTGAA+TGG | - | tig0032236:8658-8677 | Msa1448620:intron | 40.0% | |
| ! | TTAAAAGAGTACACTTGCCG+AGG | - | tig0032236:8938-8957 | Msa1448620:intron | 40.0% |
| ! | TAAAAGAGTACACTTGCCGA+GGG | - | tig0032236:8939-8958 | Msa1448620:intron | 40.0% |
| CAAGAAACTCGTATACCTTG+AGG | + | tig0032236:8974-8993 | None:intergenic | 40.0% | |
| TAGTCCTTGTGAAATCCACA+TGG | + | tig0032236:9062-9081 | None:intergenic | 40.0% | |
| TGGCATCAGGAAATCCAAAT+CGG | + | tig0032236:9142-9161 | None:intergenic | 40.0% | |
| GCGTAAATTTCCCAATTGCA+TGG | + | tig0032236:9170-9189 | None:intergenic | 40.0% | |
| ATGTGCGATTACTTGACTAC+AGG | - | tig0032236:9197-9216 | Msa1448620:intron | 40.0% | |
| TGTGCGATTACTTGACTACA+GGG | - | tig0032236:9198-9217 | Msa1448620:intron | 40.0% | |
| TGCAGTGACAAAGTTGTGAA+TGG | - | tig0032236:9374-9393 | Msa1448620:intron | 40.0% | |
| ! | ATTGTGATTCTGTCGTTTGC+TGG | + | tig0032236:9413-9432 | None:intergenic | 40.0% |
| !!! | GGGTGATGCTCTATTTTTAG+TGG | - | tig0032236:9590-9609 | Msa1448620:CDS | 40.0% |
| GACATGTATGTGTCGTGTCA+CGG | + | tig0032236:7575-7594 | None:intergenic | 45.0% | |
| GTGACACGACACATACATGT+CGG | - | tig0032236:7574-7593 | Msa1448620:three_prime_UTR | 45.0% | |
| ATGGGAAAAACTGCCACTGA+AGG | - | tig0032236:7772-7791 | Msa1448620:three_prime_UTR | 45.0% | |
| ! | CGTCTGTTATTTGACACCAC+AGG | + | tig0032236:7917-7936 | None:intergenic | 45.0% |
| AGCACTAGCACCTTTCTTGT+TGG | - | tig0032236:8083-8102 | Msa1448620:CDS | 45.0% | |
| ATCGATGAGCTAAGGTGACA+TGG | + | tig0032236:8375-8394 | None:intergenic | 45.0% | |
| GAGGACGAGAATATACGTCT+TGG | + | tig0032236:8410-8429 | None:intergenic | 45.0% | |
| CCTGAATCTTGTGTACTCTG+AGG | + | tig0032236:8429-8448 | None:intergenic | 45.0% | |
| CCTCAGAGTACACAAGATTC+AGG | - | tig0032236:8426-8445 | Msa1448620:intron | 45.0% | |
| ! | ATGGCTCGGAATGACTAACA+TGG | - | tig0032236:8721-8740 | Msa1448620:intron | 45.0% |
| ! | CTTGAGGAGCATATTTCCCT+CGG | + | tig0032236:8958-8977 | None:intergenic | 45.0% |
| TGAAGCCCAGAAACGGACAT+CGG | - | tig0032236:7457-7476 | Msa1448620:three_prime_UTR | 50.0% | |
| ATCGAGACACGCCTAATCTG+AGG | - | tig0032236:7599-7618 | Msa1448620:three_prime_UTR | 50.0% | |
| GCACGAACACTCCTCAGATT+AGG | + | tig0032236:7613-7632 | None:intergenic | 50.0% | |
| TCTCTGCGCTCACCAATGAA+TGG | - | tig0032236:7753-7772 | Msa1448620:three_prime_UTR | 50.0% | |
| CTCTGCGCTCACCAATGAAT+GGG | - | tig0032236:7754-7773 | Msa1448620:three_prime_UTR | 50.0% | |
| ! | GATTCAGAAAGCGCGTCAAG+AGG | - | tig0032236:8783-8802 | Msa1448620:intron | 50.0% |
| AAAGCGCGTCAAGAGGAAAC+TGG | - | tig0032236:8790-8809 | Msa1448620:intron | 50.0% | |
| TCAAGAGGAAACTGGTGGCA+AGG | - | tig0032236:8798-8817 | Msa1448620:intron | 50.0% | |
| CGAGGGAAATATGCTCCTCA+AGG | - | tig0032236:8956-8975 | Msa1448620:intron | 50.0% | |
| TCGGCCATGTGGATTTCACA+AGG | - | tig0032236:9055-9074 | Msa1448620:intron | 50.0% | |
| ATGCCACGAGACCATGCAAT+TGG | - | tig0032236:9156-9175 | Msa1448620:intron | 50.0% | |
| TGCCACGAGACCATGCAATT+GGG | - | tig0032236:9157-9176 | Msa1448620:intron | 50.0% | |
| TTCCCAATTGCATGGTCTCG+TGG | + | tig0032236:9162-9181 | None:intergenic | 50.0% | |
| CGTGTCCGATGTCCGTTTCT+GGG | + | tig0032236:7465-7484 | None:intergenic | 55.0% | |
| TCGTGTCCGATGTCCGTTTC+TGG | + | tig0032236:7466-7485 | None:intergenic | 55.0% | |
| TTGCATGGTCTCGTGGCATC+AGG | + | tig0032236:9155-9174 | None:intergenic | 55.0% | |
| GCGCGTCAAGAGGAAACTGG+TGG | - | tig0032236:8793-8812 | Msa1448620:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0032236 | gene | 7212 | 9680 | 7212 | ID=Msa1448620;Name=Msa1448620 |
| tig0032236 | mRNA | 7212 | 9680 | 7212 | ID=Msa1448620-mRNA-1;Parent=Msa1448620;Name=Msa1448620-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.25|0.6|0.8|0|0.2|5|841|169 |
| tig0032236 | exon | 7212 | 8133 | 7212 | ID=Msa1448620-mRNA-1:exon:16493;Parent=Msa1448620-mRNA-1 |
| tig0032236 | exon | 8431 | 8606 | 8431 | ID=Msa1448620-mRNA-1:exon:16492;Parent=Msa1448620-mRNA-1 |
| tig0032236 | exon | 8753 | 8759 | 8753 | ID=Msa1448620-mRNA-1:exon:16491;Parent=Msa1448620-mRNA-1 |
| tig0032236 | exon | 9072 | 9154 | 9072 | ID=Msa1448620-mRNA-1:exon:16490;Parent=Msa1448620-mRNA-1 |
| tig0032236 | exon | 9518 | 9680 | 9518 | ID=Msa1448620-mRNA-1:exon:16489;Parent=Msa1448620-mRNA-1 |
| tig0032236 | CDS | 9518 | 9680 | 9518 | ID=Msa1448620-mRNA-1:cds;Parent=Msa1448620-mRNA-1 |
| tig0032236 | CDS | 9072 | 9154 | 9072 | ID=Msa1448620-mRNA-1:cds;Parent=Msa1448620-mRNA-1 |
| tig0032236 | CDS | 8753 | 8759 | 8753 | ID=Msa1448620-mRNA-1:cds;Parent=Msa1448620-mRNA-1 |
| tig0032236 | CDS | 8431 | 8606 | 8431 | ID=Msa1448620-mRNA-1:cds;Parent=Msa1448620-mRNA-1 |
| tig0032236 | CDS | 8053 | 8133 | 8053 | ID=Msa1448620-mRNA-1:cds;Parent=Msa1448620-mRNA-1 |
| tig0032236 | three_prime_UTR | 7212 | 8052 | 7212 | ID=Msa1448620-mRNA-1:three_prime_utr;Parent=Msa1448620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
