AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1043740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 43 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATTCTGATGTGGATAAA+AGG 0.215914 7_2:-1903068 Msa1043740:five_prime_UTR
TAGGAATACTTATAACTAAA+TGG 0.255585 7_2:+1903011 None:intergenic
AAATGGTGGATTCTTGAAAT+TGG 0.255850 7_2:+1903028 None:intergenic
ACCATGTGGTGGTTGACTTT+GGG 0.319146 7_2:-1903214 Msa1043740:five_prime_UTR
AAAACTGTTATTTGCAAAAC+AGG 0.340762 7_2:+1902689 None:intergenic
CACCGATACAAGAGCCTTGA+TGG 0.355752 7_2:-1902052 Msa1043740:CDS
CATTCTCTGGATTGGTGAAT+CGG 0.407829 7_2:+1903132 None:intergenic
AACCATGTGGTGGTTGACTT+TGG 0.415503 7_2:-1903215 Msa1043740:five_prime_UTR
TCCAGAGAATGATGTTAATA+CGG 0.428214 7_2:-1903120 Msa1043740:five_prime_UTR
CTAGTTCTTGGCAGTGTCAA+AGG 0.429450 7_2:-1902774 Msa1043740:intron
ATATGTAAATGAAACGATAT+CGG 0.432583 7_2:+1903302 None:intergenic
AGATATCCAGAAAATTATAA+TGG 0.438771 7_2:+1902663 None:intergenic
ATTAACATCATTCTCTGGAT+TGG 0.440029 7_2:+1903124 None:intergenic
AACATCCTGTGTGAACATAA+TGG 0.446340 7_2:+1902973 None:intergenic
CCCGTATTAACATCATTCTC+TGG 0.461431 7_2:+1903119 None:intergenic
CTGCAGATGATGATGACATC+AGG 0.461918 7_2:-1902086 Msa1043740:intron
TAGTTCTTGGCAGTGTCAAA+GGG 0.472596 7_2:-1902773 Msa1043740:CDS
TGATTCTGATGTGGATAAAA+GGG 0.477448 7_2:-1903067 Msa1043740:five_prime_UTR
ATGGCCATGAGTATCTTTGT+AGG 0.493172 7_2:+1902992 None:intergenic
TGATGTGGATAAAAGGGAAT+GGG 0.494248 7_2:-1903061 Msa1043740:exon
CCAGAGAATGATGTTAATAC+GGG 0.496258 7_2:-1903119 Msa1043740:five_prime_UTR
CTGATGTGGATAAAAGGGAA+TGG 0.503803 7_2:-1903062 Msa1043740:exon
TGGAGTTCAAAGCTGGAGTA+AGG 0.508936 7_2:-1902032 Msa1043740:CDS
CTCCATCAAGGCTCTTGTAT+CGG 0.512255 7_2:+1902050 Msa1043730:CDS
GCCTTGATGGAGTTCAAAGC+TGG 0.517462 7_2:-1902039 Msa1043740:CDS
CAAAGGGGAAGGCGTGGAGA+TGG 0.519317 7_2:-1902757 Msa1043740:CDS
CTTAAGCTTTGATTCTGATG+TGG 0.524480 7_2:-1903076 Msa1043740:five_prime_UTR
GGGTTCGAATTCCATAAAAG+TGG 0.534911 7_2:-1903194 Msa1043740:five_prime_UTR
TCCAGCTTTGAACTCCATCA+AGG 0.536851 7_2:+1902038 Msa1043730:CDS
ATCTTGGGAAGCATGCCTAC+TGG 0.545900 7_2:-1902644 Msa1043740:intron
GAAAGAGAAAAGTAGCATGA+TGG 0.558487 7_2:-1903159 Msa1043740:five_prime_UTR
CTTGGCAGTGTCAAAGGGGA+AGG 0.578073 7_2:-1902768 Msa1043740:CDS
CAGTGTCAAAGGGGAAGGCG+TGG 0.616979 7_2:-1902763 Msa1043740:CDS
GGAGATGGATCTTTCTGTCG+TGG 0.620374 7_2:-1902742 Msa1043740:CDS
TATTCCTACAAAGATACTCA+TGG 0.630332 7_2:-1902996 Msa1043740:CDS
GAATACTTATAACTAAATGG+TGG 0.631665 7_2:+1903014 None:intergenic
ATCTCGAGGCTGAATATGTG+TGG 0.634545 7_2:-1903325 Msa1043740:five_prime_UTR
ACCCAAAGTCAACCACCACA+TGG 0.647342 7_2:+1903213 None:intergenic
AGTTCTTGGCAGTGTCAAAG+GGG 0.674918 7_2:-1902772 Msa1043740:CDS
CAGAGAATGATGTTAATACG+GGG 0.686813 7_2:-1903118 Msa1043740:five_prime_UTR
CATGGCCATTATGTTCACAC+AGG 0.696824 7_2:-1902978 Msa1043740:CDS
AAATGAGTGGAACCATGTGG+TGG 0.743409 7_2:-1903225 Msa1043740:five_prime_UTR
AGAAAATGAGTGGAACCATG+TGG 0.752209 7_2:-1903228 Msa1043740:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAGAAAAAGTTAAAATT+CGG + chr7_2:1902574-1902593 None:intergenic 15.0%
!! AGAAAGAAAAAGTTAAAATT+CGG + chr7_2:1902574-1902593 None:intergenic 15.0%
!! ATATGTAAATGAAACGATAT+CGG + chr7_2:1902067-1902086 Msa1043730:CDS 20.0%
!! TAGGAATACTTATAACTAAA+TGG + chr7_2:1902358-1902377 None:intergenic 20.0%
!! AGATATCCAGAAAATTATAA+TGG + chr7_2:1902706-1902725 None:intergenic 20.0%
!!! TTATAATTTTCTGGATATCT+TGG - chr7_2:1902706-1902725 Msa1043740:CDS 20.0%
!!! TATAATTTTCTGGATATCTT+GGG - chr7_2:1902707-1902726 Msa1043740:CDS 20.0%
!! ATATGTAAATGAAACGATAT+CGG + chr7_2:1902067-1902086 Msa1043730:CDS 20.0%
!! TAGGAATACTTATAACTAAA+TGG + chr7_2:1902358-1902377 None:intergenic 20.0%
!! AGATATCCAGAAAATTATAA+TGG + chr7_2:1902706-1902725 None:intergenic 20.0%
!!! TTATAATTTTCTGGATATCT+TGG - chr7_2:1902706-1902725 Msa1043740:CDS 20.0%
!!! TATAATTTTCTGGATATCTT+GGG - chr7_2:1902707-1902726 Msa1043740:CDS 20.0%
! GAATACTTATAACTAAATGG+TGG + chr7_2:1902355-1902374 None:intergenic 25.0%
!!! AACTTTTTCTTTCTAGTTCT+TGG - chr7_2:1902580-1902599 Msa1043740:intron 25.0%
!! AAAACTGTTATTTGCAAAAC+AGG + chr7_2:1902680-1902699 None:intergenic 25.0%
!! GTTTTGCAAATAACAGTTTT+TGG - chr7_2:1902680-1902699 Msa1043740:CDS 25.0%
!! TTTTGGCCATTATAATTTTC+TGG - chr7_2:1902697-1902716 Msa1043740:CDS 25.0%
! TGAAATATGTGTTTCTTTGT+TGG - chr7_2:1902865-1902884 Msa1043740:intron 25.0%
! GAATACTTATAACTAAATGG+TGG + chr7_2:1902355-1902374 None:intergenic 25.0%
!!! AACTTTTTCTTTCTAGTTCT+TGG - chr7_2:1902580-1902599 Msa1043740:intron 25.0%
!! AAAACTGTTATTTGCAAAAC+AGG + chr7_2:1902680-1902699 None:intergenic 25.0%
!! GTTTTGCAAATAACAGTTTT+TGG - chr7_2:1902680-1902699 Msa1043740:CDS 25.0%
!! TTTTGGCCATTATAATTTTC+TGG - chr7_2:1902697-1902716 Msa1043740:CDS 25.0%
! TGAAATATGTGTTTCTTTGT+TGG - chr7_2:1902865-1902884 Msa1043740:intron 25.0%
! ATGGCAAAACATTTTTCTAC+AGG - chr7_2:1902017-1902036 Msa1043740:CDS 30.0%
! TGGCAAAACATTTTTCTACA+GGG - chr7_2:1902018-1902037 Msa1043740:CDS 30.0%
! TGAAAAATTCAATGATGACG+TGG - chr7_2:1902102-1902121 Msa1043740:intron 30.0%
! TACTTTTCTCTTTCAACACA+TGG + chr7_2:1902201-1902220 Msa1043730:CDS 30.0%
ATTAACATCATTCTCTGGAT+TGG + chr7_2:1902245-1902264 Msa1043730:CDS 30.0%
TCCAGAGAATGATGTTAATA+CGG - chr7_2:1902246-1902265 Msa1043740:intron 30.0%
TTGATTCTGATGTGGATAAA+AGG - chr7_2:1902298-1902317 Msa1043740:intron 30.0%
TGATTCTGATGTGGATAAAA+GGG - chr7_2:1902299-1902318 Msa1043740:intron 30.0%
!! AAATGGTGGATTCTTGAAAT+TGG + chr7_2:1902341-1902360 None:intergenic 30.0%
TATTCCTACAAAGATACTCA+TGG - chr7_2:1902370-1902389 Msa1043740:intron 30.0%
! CATAGCAGAAATTCTTTTTG+AGG - chr7_2:1902936-1902955 Msa1043740:intron 30.0%
TCTGAAGAAGTTAAAATCTC+TGG + chr7_2:1903087-1903106 None:intergenic 30.0%
! TTTAACTTCTTCAGATTCAG+TGG - chr7_2:1903092-1903111 Msa1043740:five_prime_UTR 30.0%
ATCATCATCTGCAGAAAATT+TGG + chr7_2:1903274-1903293 None:intergenic 30.0%
! ATGGCAAAACATTTTTCTAC+AGG - chr7_2:1902017-1902036 Msa1043740:CDS 30.0%
! TGGCAAAACATTTTTCTACA+GGG - chr7_2:1902018-1902037 Msa1043740:CDS 30.0%
! TGAAAAATTCAATGATGACG+TGG - chr7_2:1902102-1902121 Msa1043740:intron 30.0%
! TACTTTTCTCTTTCAACACA+TGG + chr7_2:1902201-1902220 Msa1043730:CDS 30.0%
ATTAACATCATTCTCTGGAT+TGG + chr7_2:1902245-1902264 Msa1043730:CDS 30.0%
TCCAGAGAATGATGTTAATA+CGG - chr7_2:1902246-1902265 Msa1043740:intron 30.0%
TTGATTCTGATGTGGATAAA+AGG - chr7_2:1902298-1902317 Msa1043740:intron 30.0%
TGATTCTGATGTGGATAAAA+GGG - chr7_2:1902299-1902318 Msa1043740:intron 30.0%
!! AAATGGTGGATTCTTGAAAT+TGG + chr7_2:1902341-1902360 None:intergenic 30.0%
TATTCCTACAAAGATACTCA+TGG - chr7_2:1902370-1902389 Msa1043740:intron 30.0%
! CATAGCAGAAATTCTTTTTG+AGG - chr7_2:1902936-1902955 Msa1043740:intron 30.0%
TCTGAAGAAGTTAAAATCTC+TGG + chr7_2:1903087-1903106 None:intergenic 30.0%
! TTTAACTTCTTCAGATTCAG+TGG - chr7_2:1903092-1903111 Msa1043740:five_prime_UTR 30.0%
ATCATCATCTGCAGAAAATT+TGG + chr7_2:1903274-1903293 None:intergenic 30.0%
!! CAGCACTTTTAGAAAATGAG+TGG - chr7_2:1902128-1902147 Msa1043740:intron 35.0%
!! ACACATGGATTCCACTTTTA+TGG + chr7_2:1902186-1902205 Msa1043730:CDS 35.0%
GAAAGAGAAAAGTAGCATGA+TGG - chr7_2:1902207-1902226 Msa1043740:intron 35.0%
CCAGAGAATGATGTTAATAC+GGG - chr7_2:1902247-1902266 Msa1043740:intron 35.0%
CAGAGAATGATGTTAATACG+GGG - chr7_2:1902248-1902267 Msa1043740:intron 35.0%
! CTTAAGCTTTGATTCTGATG+TGG - chr7_2:1902290-1902309 Msa1043740:intron 35.0%
TGATGTGGATAAAAGGGAAT+GGG - chr7_2:1902305-1902324 Msa1043740:intron 35.0%
AACATCCTGTGTGAACATAA+TGG + chr7_2:1902396-1902415 None:intergenic 35.0%
AGAATTTCTGCTATGTATGC+AGG + chr7_2:1902931-1902950 None:intergenic 35.0%
ACCTTCTTCGAGAAATTAGA+AGG - chr7_2:1902981-1903000 Msa1043740:CDS 35.0%
TCCTTCTAATTTCTCGAAGA+AGG + chr7_2:1902985-1903004 None:intergenic 35.0%
TGTGAGGTCTAAATCTTTCA+AGG + chr7_2:1903048-1903067 None:intergenic 35.0%
! AAGTCCTACACTGTTTTCAA+AGG + chr7_2:1903177-1903196 None:intergenic 35.0%
TTCATGACAGTACACTATTC+AGG + chr7_2:1903231-1903250 None:intergenic 35.0%
!! CAGCACTTTTAGAAAATGAG+TGG - chr7_2:1902128-1902147 Msa1043740:intron 35.0%
!! ACACATGGATTCCACTTTTA+TGG + chr7_2:1902186-1902205 Msa1043730:CDS 35.0%
GAAAGAGAAAAGTAGCATGA+TGG - chr7_2:1902207-1902226 Msa1043740:intron 35.0%
CCAGAGAATGATGTTAATAC+GGG - chr7_2:1902247-1902266 Msa1043740:intron 35.0%
CAGAGAATGATGTTAATACG+GGG - chr7_2:1902248-1902267 Msa1043740:intron 35.0%
! CTTAAGCTTTGATTCTGATG+TGG - chr7_2:1902290-1902309 Msa1043740:intron 35.0%
TGATGTGGATAAAAGGGAAT+GGG - chr7_2:1902305-1902324 Msa1043740:intron 35.0%
AACATCCTGTGTGAACATAA+TGG + chr7_2:1902396-1902415 None:intergenic 35.0%
AGAATTTCTGCTATGTATGC+AGG + chr7_2:1902931-1902950 None:intergenic 35.0%
ACCTTCTTCGAGAAATTAGA+AGG - chr7_2:1902981-1903000 Msa1043740:CDS 35.0%
TCCTTCTAATTTCTCGAAGA+AGG + chr7_2:1902985-1903004 None:intergenic 35.0%
TGTGAGGTCTAAATCTTTCA+AGG + chr7_2:1903048-1903067 None:intergenic 35.0%
! AAGTCCTACACTGTTTTCAA+AGG + chr7_2:1903177-1903196 None:intergenic 35.0%
TTCATGACAGTACACTATTC+AGG + chr7_2:1903231-1903250 None:intergenic 35.0%
! ATTTTTCTACAGGGATCTCG+AGG - chr7_2:1902027-1902046 Msa1043740:CDS 40.0%
AGAAAATGAGTGGAACCATG+TGG - chr7_2:1902138-1902157 Msa1043740:intron 40.0%
GGGTTCGAATTCCATAAAAG+TGG - chr7_2:1902172-1902191 Msa1043740:intron 40.0%
!! CATTCTCTGGATTGGTGAAT+CGG + chr7_2:1902237-1902256 Msa1043730:CDS 40.0%
CCCGTATTAACATCATTCTC+TGG + chr7_2:1902250-1902269 Msa1043730:CDS 40.0%
CTGATGTGGATAAAAGGGAA+TGG - chr7_2:1902304-1902323 Msa1043740:intron 40.0%
ATGGCCATGAGTATCTTTGT+AGG + chr7_2:1902377-1902396 None:intergenic 40.0%
TAGTTCTTGGCAGTGTCAAA+GGG - chr7_2:1902593-1902612 Msa1043740:intron 40.0%
ATGTGTTTCTTTGTTGGCCA+AGG - chr7_2:1902871-1902890 Msa1043740:intron 40.0%
TAGAAGGATTCATCACGTGT+AGG - chr7_2:1902997-1903016 Msa1043740:CDS 40.0%
CAGATTCAGTGGAATCTGTA+AGG - chr7_2:1903103-1903122 Msa1043740:five_prime_UTR 40.0%
! GCAACCTTTGAAAACAGTGT+AGG - chr7_2:1903170-1903189 Msa1043740:five_prime_UTR 40.0%
CATCTGCAGAAAATTTGGAG+AGG + chr7_2:1903269-1903288 None:intergenic 40.0%
! ATTTTTCTACAGGGATCTCG+AGG - chr7_2:1902027-1902046 Msa1043740:CDS 40.0%
AGAAAATGAGTGGAACCATG+TGG - chr7_2:1902138-1902157 Msa1043740:intron 40.0%
GGGTTCGAATTCCATAAAAG+TGG - chr7_2:1902172-1902191 Msa1043740:intron 40.0%
!! CATTCTCTGGATTGGTGAAT+CGG + chr7_2:1902237-1902256 Msa1043730:CDS 40.0%
CCCGTATTAACATCATTCTC+TGG + chr7_2:1902250-1902269 Msa1043730:CDS 40.0%
CTGATGTGGATAAAAGGGAA+TGG - chr7_2:1902304-1902323 Msa1043740:intron 40.0%
ATGGCCATGAGTATCTTTGT+AGG + chr7_2:1902377-1902396 None:intergenic 40.0%
TAGTTCTTGGCAGTGTCAAA+GGG - chr7_2:1902593-1902612 Msa1043740:intron 40.0%
ATGTGTTTCTTTGTTGGCCA+AGG - chr7_2:1902871-1902890 Msa1043740:intron 40.0%
TAGAAGGATTCATCACGTGT+AGG - chr7_2:1902997-1903016 Msa1043740:CDS 40.0%
CAGATTCAGTGGAATCTGTA+AGG - chr7_2:1903103-1903122 Msa1043740:five_prime_UTR 40.0%
! GCAACCTTTGAAAACAGTGT+AGG - chr7_2:1903170-1903189 Msa1043740:five_prime_UTR 40.0%
CATCTGCAGAAAATTTGGAG+AGG + chr7_2:1903269-1903288 None:intergenic 40.0%
ATCTCGAGGCTGAATATGTG+TGG - chr7_2:1902041-1902060 Msa1043740:CDS 45.0%
AAATGAGTGGAACCATGTGG+TGG - chr7_2:1902141-1902160 Msa1043740:intron 45.0%
! AACCATGTGGTGGTTGACTT+TGG - chr7_2:1902151-1902170 Msa1043740:intron 45.0%
! ACCATGTGGTGGTTGACTTT+GGG - chr7_2:1902152-1902171 Msa1043740:intron 45.0%
CATGGCCATTATGTTCACAC+AGG - chr7_2:1902388-1902407 Msa1043740:intron 45.0%
! CTAGTTCTTGGCAGTGTCAA+AGG - chr7_2:1902592-1902611 Msa1043740:intron 45.0%
AGTTCTTGGCAGTGTCAAAG+GGG - chr7_2:1902594-1902613 Msa1043740:intron 45.0%
ACAGAAAGAGACCTACCAGT+AGG + chr7_2:1902740-1902759 None:intergenic 45.0%
GTCTCTACTCTACTAGTGCA+CGG - chr7_2:1902804-1902823 Msa1043740:intron 45.0%
CATGTCCAACTCTTTCACCT+TGG + chr7_2:1902891-1902910 None:intergenic 45.0%
!! TGTAGGAGCATTCCCTCAAA+AGG - chr7_2:1903014-1903033 Msa1043740:CDS 45.0%
! AAGGATGTGCAGCCTTTTGA+GGG + chr7_2:1903029-1903048 None:intergenic 45.0%
! TGTATGCAGCAAGAAGTGTG+AGG + chr7_2:1903064-1903083 None:intergenic 45.0%
TGCTCGAAGTCTAAGTGAAG+AGG - chr7_2:1903143-1903162 Msa1043740:five_prime_UTR 45.0%
! CTGCAGATGATGATGACATC+AGG - chr7_2:1903280-1903299 Msa1043740:five_prime_UTR 45.0%
CTCCATCAAGGCTCTTGTAT+CGG + chr7_2:1903319-1903338 None:intergenic 45.0%
!! TCCAGCTTTGAACTCCATCA+AGG + chr7_2:1903331-1903350 None:intergenic 45.0%
TGGAGTTCAAAGCTGGAGTA+AGG - chr7_2:1903334-1903353 Msa1043740:five_prime_UTR 45.0%
ATCTCGAGGCTGAATATGTG+TGG - chr7_2:1902041-1902060 Msa1043740:CDS 45.0%
AAATGAGTGGAACCATGTGG+TGG - chr7_2:1902141-1902160 Msa1043740:intron 45.0%
! AACCATGTGGTGGTTGACTT+TGG - chr7_2:1902151-1902170 Msa1043740:intron 45.0%
! ACCATGTGGTGGTTGACTTT+GGG - chr7_2:1902152-1902171 Msa1043740:intron 45.0%
CATGGCCATTATGTTCACAC+AGG - chr7_2:1902388-1902407 Msa1043740:intron 45.0%
! CTAGTTCTTGGCAGTGTCAA+AGG - chr7_2:1902592-1902611 Msa1043740:intron 45.0%
AGTTCTTGGCAGTGTCAAAG+GGG - chr7_2:1902594-1902613 Msa1043740:intron 45.0%
ACAGAAAGAGACCTACCAGT+AGG + chr7_2:1902740-1902759 None:intergenic 45.0%
GTCTCTACTCTACTAGTGCA+CGG - chr7_2:1902804-1902823 Msa1043740:intron 45.0%
CATGTCCAACTCTTTCACCT+TGG + chr7_2:1902891-1902910 None:intergenic 45.0%
!! TGTAGGAGCATTCCCTCAAA+AGG - chr7_2:1903014-1903033 Msa1043740:CDS 45.0%
! AAGGATGTGCAGCCTTTTGA+GGG + chr7_2:1903029-1903048 None:intergenic 45.0%
! TGTATGCAGCAAGAAGTGTG+AGG + chr7_2:1903064-1903083 None:intergenic 45.0%
TGCTCGAAGTCTAAGTGAAG+AGG - chr7_2:1903143-1903162 Msa1043740:five_prime_UTR 45.0%
! CTGCAGATGATGATGACATC+AGG - chr7_2:1903280-1903299 Msa1043740:five_prime_UTR 45.0%
CTCCATCAAGGCTCTTGTAT+CGG + chr7_2:1903319-1903338 None:intergenic 45.0%
!! TCCAGCTTTGAACTCCATCA+AGG + chr7_2:1903331-1903350 None:intergenic 45.0%
TGGAGTTCAAAGCTGGAGTA+AGG - chr7_2:1903334-1903353 Msa1043740:five_prime_UTR 45.0%
ACCCAAAGTCAACCACCACA+TGG + chr7_2:1902156-1902175 Msa1043730:CDS 50.0%
GGAGATGGATCTTTCTGTCG+TGG - chr7_2:1902624-1902643 Msa1043740:intron 50.0%
! ATCTTGGGAAGCATGCCTAC+TGG - chr7_2:1902722-1902741 Msa1043740:CDS 50.0%
GTTGGCCAAGGTGAAAGAGT+TGG - chr7_2:1902883-1902902 Msa1043740:intron 50.0%
! CAAGGATGTGCAGCCTTTTG+AGG + chr7_2:1903030-1903049 None:intergenic 50.0%
CACCGATACAAGAGCCTTGA+TGG - chr7_2:1903314-1903333 Msa1043740:five_prime_UTR 50.0%
GCCTTGATGGAGTTCAAAGC+TGG - chr7_2:1903327-1903346 Msa1043740:five_prime_UTR 50.0%
ACCCAAAGTCAACCACCACA+TGG + chr7_2:1902156-1902175 Msa1043730:CDS 50.0%
GGAGATGGATCTTTCTGTCG+TGG - chr7_2:1902624-1902643 Msa1043740:intron 50.0%
! ATCTTGGGAAGCATGCCTAC+TGG - chr7_2:1902722-1902741 Msa1043740:CDS 50.0%
GTTGGCCAAGGTGAAAGAGT+TGG - chr7_2:1902883-1902902 Msa1043740:intron 50.0%
! CAAGGATGTGCAGCCTTTTG+AGG + chr7_2:1903030-1903049 None:intergenic 50.0%
CACCGATACAAGAGCCTTGA+TGG - chr7_2:1903314-1903333 Msa1043740:five_prime_UTR 50.0%
GCCTTGATGGAGTTCAAAGC+TGG - chr7_2:1903327-1903346 Msa1043740:five_prime_UTR 50.0%
CTTGGCAGTGTCAAAGGGGA+AGG - chr7_2:1902598-1902617 Msa1043740:intron 55.0%
! TGGGAAGCATGCCTACTGGT+AGG - chr7_2:1902726-1902745 Msa1043740:CDS 55.0%
CTTGGCAGTGTCAAAGGGGA+AGG - chr7_2:1902598-1902617 Msa1043740:intron 55.0%
! TGGGAAGCATGCCTACTGGT+AGG - chr7_2:1902726-1902745 Msa1043740:CDS 55.0%
CAGTGTCAAAGGGGAAGGCG+TGG - chr7_2:1902603-1902622 Msa1043740:intron 60.0%
! CAAAGGGGAAGGCGTGGAGA+TGG - chr7_2:1902609-1902628 Msa1043740:intron 60.0%
CAGTGTCAAAGGGGAAGGCG+TGG - chr7_2:1902603-1902622 Msa1043740:intron 60.0%
! CAAAGGGGAAGGCGTGGAGA+TGG - chr7_2:1902609-1902628 Msa1043740:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 1902017 1903371 1902017 ID=Msa1043740;Name=Msa1043740
chr7_2 mRNA 1902017 1903371 1902017 ID=Msa1043740-mRNA-1;Parent=Msa1043740;Name=Msa1043740-mRNA-1;_AED=0.27;_eAED=0.37;_QI=306|0.5|0.66|1|0.5|0.66|3|0|110
chr7_2 exon 1902017 1902102 1902017 ID=Msa1043740-mRNA-1:exon:430;Parent=Msa1043740-mRNA-1
chr7_2 exon 1902645 1902792 1902645 ID=Msa1043740-mRNA-1:exon:429;Parent=Msa1043740-mRNA-1
chr7_2 exon 1902970 1903371 1902970 ID=Msa1043740-mRNA-1:exon:428;Parent=Msa1043740-mRNA-1
chr7_2 five_prime_UTR 1903066 1903371 1903066 ID=Msa1043740-mRNA-1:five_prime_utr;Parent=Msa1043740-mRNA-1
chr7_2 CDS 1902970 1903065 1902970 ID=Msa1043740-mRNA-1:cds;Parent=Msa1043740-mRNA-1
chr7_2 CDS 1902645 1902792 1902645 ID=Msa1043740-mRNA-1:cds;Parent=Msa1043740-mRNA-1
chr7_2 CDS 1902017 1902102 1902017 ID=Msa1043740-mRNA-1:cds;Parent=Msa1043740-mRNA-1
Gene Sequence

>Msa1043740

ATGGGATCAACTCTACCAATTTCAAGAATCCACCATTTAGTTATAAGTATTCCTACAAAGATACTCATGGCCATTATGTTCACACAGGATGTTGATTTCTTGGCAGTGTCAAAGGGGAAGGCGTGGAGATGGATCTTTCTGTCGTGGTTGCGCAGAAGTTGCTGTGTTTGTCTGCATCCTGTTTTGCAAATAACAGTTTTTGGCCATTATAATTTTCTGGATATCTTGGGAAGCATGCCTACTGATGATGATGACATCAGGAGAAATGTGAACACCGATACAAGAGCCTTGATGGAGTTCAAAGCTGGAGTAAGGACTAAAATGAATCAA
Protein sequence

>Msa1043740

MGSTLPISRIHHLVISIPTKILMAIMFTQDVDFLAVSKGKAWRWIFLSWLRRSCCVCLHPVLQITVFGHYNFLDILGSMPTDDDDIRRNVNTDTRALMEFKAGVRTKMNQ