AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0537300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0537300 MtrunA17_Chr4g0002981 88.462 104 12 0 321 424 1187 1290 9.93e-54 193
Msa0537300 MtrunA17_Chr4g0049851 88.889 81 9 0 244 324 141 221 1.05e-43 157
Msa0537300 MtrunA17_Chr4g0049861 80.247 81 16 0 244 324 139 219 1.13e-37 141
Msa0537300 MtrunA17_Chr2g0333451 68.269 104 33 0 315 418 1186 1289 3.23e-37 144
Msa0537300 MtrunA17_Chr8g0354961 47.872 94 49 0 320 413 96 189 2.96e-22 93.6
Msa0537300 MtrunA17_Chr8g0391241 49.474 95 46 1 77 169 117 211 7.09e-19 89.0
Msa0537300 MtrunA17_Chr8g0354921 42.553 94 54 0 320 413 242 335 3.10e-17 82.4
Msa0537300 MtrunA17_Chr4g0045551 56.923 65 22 2 56 114 345 409 1.06e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0537300 AT1G15780.1 66.667 96 32 0 322 417 1238 1333 1.13e-33 134
Msa0537300 AT1G15780.3 66.667 96 32 0 322 417 1260 1355 1.13e-33 134
Msa0537300 AT5G64370.1 70.370 81 24 0 244 324 135 215 9.90e-26 108
Msa0537300 AT2G10440.2 48.352 91 46 1 324 413 749 839 2.29e-17 85.1
Msa0537300 AT2G10440.1 46.809 94 49 1 321 413 836 929 2.90e-17 84.7
Msa0537300 AT1G23190.1 59.375 64 24 1 77 138 116 179 8.30e-15 77.0
Msa0537300 AT1G70730.1 38.983 118 56 5 77 190 117 222 6.25e-14 74.3
Msa0537300 AT1G70730.2 38.983 118 56 5 77 190 137 242 7.08e-14 73.9
Msa0537300 AT1G70730.3 38.983 118 56 5 77 190 194 299 1.16e-13 73.6

Find 119 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTTGATTGTAGGAATTT+TGG 0.123361 4_1:+15506173 Msa0537300:intron
GTTTCCATTATGCAGGATTT+TGG 0.132616 4_1:+15503712 Msa0537300:intron
TGGAAACTTGTCTATGAATA+TGG 0.187776 4_1:-15507529 None:intergenic
TACTCATGTGACTTTATAAA+TGG 0.206790 4_1:-15508134 None:intergenic
GGGAATCACAGCAATATAAT+TGG 0.229036 4_1:+15506379 Msa0537300:CDS
TGAAAGCAGAAGCTCTTTAA+TGG 0.234252 4_1:+15505389 Msa0537300:intron
TCCGAGTATGCACAACAATT+TGG 0.240706 4_1:+15507878 Msa0537300:CDS
GGAGAAGAATTAGGATAGTT+TGG 0.245726 4_1:-15507507 None:intergenic
TAGAAAGGAAACAACTTAAA+TGG 0.255281 4_1:+15503200 Msa0537300:CDS
ATGAATATGGGAGAAGAATT+AGG 0.346819 4_1:-15507516 None:intergenic
TCCGCATTGTCATCGTCTTC+AGG 0.348871 4_1:+15504582 Msa0537300:CDS
TCTCTATTTCGTTTAAGAAA+TGG 0.351637 4_1:-15508108 None:intergenic
CTCCTAGGCCAAAATTAAAA+AGG 0.352934 4_1:-15508012 None:intergenic
TATTCAGCCTCTACGCTTGC+TGG 0.358985 4_1:+15507479 Msa0537300:CDS
AAGTCTTTGCTATATCCTTA+AGG 0.366345 4_1:-15507829 None:intergenic
TTCATATCCCTCTCAAGAAA+TGG 0.366645 4_1:-15506319 None:intergenic
CTCACAACCTATGTCCCTTA+AGG 0.372725 4_1:+15507814 Msa0537300:CDS
TTGGTAATTCCCTCTGGTGC+AGG 0.389546 4_1:-15503763 None:intergenic
AATGAATTATTCTTAAATAG+TGG 0.400998 4_1:+15507972 Msa0537300:exon
GAATTCTCCGGCGGTGGGAT+TGG 0.401983 4_1:+15502503 Msa0537300:CDS
AAATGGTTTCCGAAATTCAA+TGG 0.407843 4_1:-15504515 None:intergenic
TTGAACACTGCCGTTGTGAT+TGG 0.411409 4_1:+15506358 Msa0537300:CDS
TCAGTTGATTCCCCGTCAAC+AGG 0.414927 4_1:-15506250 None:intergenic
GCTATTATTGAATAAACAAC+AGG 0.420767 4_1:-15508070 None:intergenic
GGAACATTCAGCTCTAAGTA+TGG 0.422754 4_1:+15507905 Msa0537300:CDS
CCATTATCAACTTGAAGCCT+TGG 0.428325 4_1:-15503280 None:intergenic
TTATCTCACCGGGATTCAAC+TGG 0.430039 4_1:-15507549 None:intergenic
GGAGAAGAAGTTGCCGGCGG+TGG 0.430854 4_1:+15502429 Msa0537300:CDS
GTTGAACACACGGATCTTCA+TGG 0.437912 4_1:+15502563 Msa0537300:CDS
ACCAAATTGTTGTGCATACT+CGG 0.438409 4_1:-15507879 None:intergenic
GCTATATCCTTAAGGGACAT+AGG 0.441593 4_1:-15507821 None:intergenic
AGTCTTTGCTATATCCTTAA+GGG 0.444176 4_1:-15507828 None:intergenic
AAATATAACATGGAAAATAG+TGG 0.448116 4_1:+15503739 Msa0537300:CDS
GTCATCAAATAGCACCCATC+TGG 0.457933 4_1:-15503244 None:intergenic
TGAGAAGAAGTCGCCGGCGG+TGG 0.458724 4_1:+15502463 Msa0537300:CDS
ACCGCCGGCAACTTCTTCTC+CGG 0.465767 4_1:-15502427 None:intergenic
GGAATCACAGCAATATAATT+GGG 0.466717 4_1:+15506380 Msa0537300:CDS
AGGCTCTGTGAAAGTCGAAA+TGG 0.471589 4_1:-15504532 None:intergenic
TGAACACTGCCGTTGTGATT+GGG 0.476635 4_1:+15506359 Msa0537300:CDS
ACCGCCGGCGACTTCTTCTC+AGG 0.482475 4_1:-15502461 None:intergenic
CCGGCGGTGGGAGGGAGTAC+CGG 0.483738 4_1:+15502476 Msa0537300:CDS
GGAAACTTGTCTATGAATAT+GGG 0.483866 4_1:-15507528 None:intergenic
TCATATCCCTCTCAAGAAAT+GGG 0.484312 4_1:-15506318 None:intergenic
ACAATAACTTCAGGTTCTGC+AGG 0.490279 4_1:-15504095 None:intergenic
GAAATAACACCGCGAGCAGT+AGG 0.494316 4_1:-15507857 None:intergenic
AGCAAGCGTAGAGGCTGAAT+AGG 0.495077 4_1:-15507477 None:intergenic
CTCTGATGCAGAGAGGGCAT+TGG 0.495323 4_1:+15505312 Msa0537300:CDS
AAACTCATGCAGACATGTAA+AGG 0.497836 4_1:-15504552 None:intergenic
ATGGCAGGAGTTCACATCTT+GGG 0.498030 4_1:+15507931 Msa0537300:CDS
GAAGAATTAGGATAGTTTGG+AGG 0.499904 4_1:-15507504 None:intergenic
GGAGAAGAATTCTCCGGCGG+TGG 0.501018 4_1:+15502497 Msa0537300:CDS
AATTTGCAGAACCTGTTGAC+GGG 0.505913 4_1:+15506239 Msa0537300:CDS
CTCTAAGTATGGAGAATGGC+AGG 0.507662 4_1:+15507916 Msa0537300:CDS
AATAATGTTTGAAACCTCCT+AGG 0.515891 4_1:-15508027 None:intergenic
TGAATACACAACAACAATCA+AGG 0.525569 4_1:+15503795 Msa0537300:CDS
AATGGTTTGTGTCAAGTGAA+TGG 0.529559 4_1:+15503218 Msa0537300:CDS
ACAAGTTTCCAGTTGAATCC+CGG 0.532358 4_1:+15507541 Msa0537300:CDS
TATAAGCCCATTTCTTGAGA+GGG 0.534996 4_1:+15506312 Msa0537300:CDS
AAGAAGTTGCCGGCGGTGGG+AGG 0.535005 4_1:+15502433 Msa0537300:CDS
CAATGCCCTCTCTGCATCAG+AGG 0.535640 4_1:-15505311 None:intergenic
TTGAACACACGGATCTTCAT+GGG 0.539473 4_1:+15502564 Msa0537300:CDS
GAGAAGAAGTTGCCGGCGGT+GGG 0.544704 4_1:+15502430 Msa0537300:CDS
GAACTTTGTTCCTGCAACAA+GGG 0.545173 4_1:+15504053 Msa0537300:intron
AGAACTTTGTTCCTGCAACA+AGG 0.551401 4_1:+15504052 Msa0537300:intron
GGGATTGGATTGAAGATGAT+CGG 0.551638 4_1:+15502518 Msa0537300:CDS
AATGGCAGGAGTTCACATCT+TGG 0.551776 4_1:+15507930 Msa0537300:CDS
GAGTATGCACAACAATTTGG+TGG 0.553199 4_1:+15507881 Msa0537300:CDS
TGTCTCCGCCGTTGAACACA+CGG 0.556717 4_1:+15502553 Msa0537300:CDS
AGAAGTTGCCGGCGGTGGGA+GGG 0.557365 4_1:+15502434 Msa0537300:CDS
AGGTTGTGAGAAATTACATA+AGG 0.561974 4_1:-15507801 None:intergenic
AACATCCTCTGATGCAGAGA+GGG 0.562027 4_1:+15505306 Msa0537300:CDS
AGAAGTCGCCGGCGGTGGGA+GGG 0.564843 4_1:+15502468 Msa0537300:CDS
CCGGTACTCCCTCCCACCGC+CGG 0.565659 4_1:-15502476 None:intergenic
AAGAAGTCGCCGGCGGTGGG+AGG 0.570671 4_1:+15502467 Msa0537300:CDS
GAGAAGAAGTCGCCGGCGGT+GGG 0.571292 4_1:+15502464 Msa0537300:CDS
ATGAAGATCCGTGTGTTCAA+CGG 0.571915 4_1:-15502561 None:intergenic
ATTCATAGGAAAACACAAAG+AGG 0.573823 4_1:+15504809 Msa0537300:intron
CTTTGTTCCTGCAACAAGGG+TGG 0.576922 4_1:+15504056 Msa0537300:CDS
CTTCAATCCAATCCCACCGC+CGG 0.578155 4_1:-15502510 None:intergenic
GGCATTGGAACATATTAATG+AGG 0.584362 4_1:+15505327 Msa0537300:CDS
CTTTGCACTGAAGTATAACA+TGG 0.585333 4_1:+15506285 Msa0537300:CDS
TCTCGTGTAGAGAAACCAAA+TGG 0.585598 4_1:-15506202 None:intergenic
CAGGTACTCCCTCCCACCGC+CGG 0.587391 4_1:-15502442 None:intergenic
TTATAAGCCCATTTCTTGAG+AGG 0.587724 4_1:+15506311 Msa0537300:CDS
GCAATATAATTGGGATACAC+AGG 0.593877 4_1:+15506389 Msa0537300:CDS
TTATGGCAGTAAGGGGAATG+AGG 0.594861 4_1:+15507742 Msa0537300:intron
ATTTCGTTTAAGAAATGGAG+AGG 0.597227 4_1:-15508103 None:intergenic
TCAGCTCTAAGTATGGAGAA+TGG 0.598733 4_1:+15507912 Msa0537300:CDS
AGTTCCGGAGAAGAAGTTGC+CGG 0.598946 4_1:+15502423 None:intergenic
ACCGCCGGAGAATTCTTCTC+CGG 0.601190 4_1:-15502495 None:intergenic
CAAGTGAATGGTCTCCAGAT+GGG 0.601629 4_1:+15503230 Msa0537300:CDS
GAATTTGCAGAACCTGTTGA+CGG 0.607240 4_1:+15506238 Msa0537300:CDS
GAGAAGAATTCTCCGGCGGT+GGG 0.611495 4_1:+15502498 Msa0537300:CDS
TCAAGTGAATGGTCTCCAGA+TGG 0.615111 4_1:+15503229 Msa0537300:CDS
TCTCTACACGAGAGAAGAAG+TGG 0.622564 4_1:+15506212 Msa0537300:CDS
AGTACCGGAGAAGAATTCTC+CGG 0.627928 4_1:+15502491 Msa0537300:CDS
ACTTGTGATCCTACTGCTCG+CGG 0.635100 4_1:+15507848 Msa0537300:CDS
AAATAGTGGACCTGCACCAG+AGG 0.636183 4_1:+15503753 Msa0537300:CDS
TATGCACAACAATTTGGTGG+AGG 0.647411 4_1:+15507884 Msa0537300:CDS
AATAGTGGACCTGCACCAGA+GGG 0.651752 4_1:+15503754 Msa0537300:CDS
AGTACCTGAGAAGAAGTCGC+CGG 0.652136 4_1:+15502457 Msa0537300:CDS
CTTGAGAGGGATATGAACCA+CGG 0.660131 4_1:+15506325 Msa0537300:CDS
TATAATTGGGATACACAGGA+AGG 0.665482 4_1:+15506393 Msa0537300:CDS
ACCTCAGTTGATATTCTACA+CGG 0.667331 4_1:+15504859 Msa0537300:CDS
GGAGGAACCAGCAAGCGTAG+AGG 0.671047 4_1:-15507486 None:intergenic
ATTTGCAGAACCTGTTGACG+GGG 0.676991 4_1:+15506240 Msa0537300:CDS
ACCTGAGAAGAAGTCGCCGG+CGG 0.678050 4_1:+15502460 Msa0537300:CDS
TGACAGCAAACACAACTCCA+AGG 0.679213 4_1:+15503263 Msa0537300:CDS
ACCTGAAGACGATGACAATG+CGG 0.684219 4_1:-15504583 None:intergenic
TCCGGAGAAGAAGTTGCCGG+CGG 0.691095 4_1:+15502426 None:intergenic
GAACATCCTCTGATGCAGAG+AGG 0.691498 4_1:+15505305 Msa0537300:CDS
AAGATCCGTGTGTTCAACGG+CGG 0.695418 4_1:-15502558 None:intergenic
AACACACGGATCTTCATGGG+AGG 0.700398 4_1:+15502567 Msa0537300:CDS
GAGGGATATGAACCACGGAG+AGG 0.717220 4_1:+15506330 Msa0537300:CDS
ACCGGAGAAGAATTCTCCGG+CGG 0.719447 4_1:+15502494 Msa0537300:CDS
GTTCAACGGCGGAGACAGCG+AGG 0.726995 4_1:-15502547 None:intergenic
ACCGTGTAGAATATCAACTG+AGG 0.734819 4_1:-15504860 None:intergenic
GCTGTGATTCCCAATCACAA+CGG 0.738812 4_1:-15506368 None:intergenic
TGTTCAAAATAACCTCTCCG+TGG 0.747273 4_1:-15506342 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAATTTGAATAAAAAAG+AGG + chr4_1:15502784-15502803 Msa0537300:intron 10.0%
!! TAAAAAAATAAAAGACATTA+GGG - chr4_1:15504627-15504646 None:intergenic 10.0%
!! ATAAAAAAATAAAAGACATT+AGG - chr4_1:15504628-15504647 None:intergenic 10.0%
!! TGAATTTACAATTTATAAAT+TGG + chr4_1:15505177-15505196 Msa0537300:intron 10.0%
!!! TAATTTCGGTTTTAATTATT+AGG + chr4_1:15502745-15502764 Msa0537300:intron 15.0%
!!! AATTTCGGTTTTAATTATTA+GGG + chr4_1:15502746-15502765 Msa0537300:intron 15.0%
!!! TGGAAATTTTAATTTTTTGT+GGG + chr4_1:15502854-15502873 Msa0537300:intron 15.0%
!! AACAAATCATAAATAACAAA+TGG - chr4_1:15503114-15503133 None:intergenic 15.0%
!!! CAAATAATTTTATAAACCTA+AGG - chr4_1:15504935-15504954 None:intergenic 15.0%
!! AAAATTCAAAATTTGATTGT+AGG + chr4_1:15506165-15506184 Msa0537300:intron 15.0%
!! ATTGACATTAATATATGTTA+TGG + chr4_1:15506591-15506610 Msa0537300:intron 15.0%
!! TGTATTAAAAAAATTTACAG+TGG - chr4_1:15507061-15507080 None:intergenic 15.0%
!! AATGAATTATTCTTAAATAG+TGG + chr4_1:15507972-15507991 Msa0537300:exon 15.0%
!!! GAATCAGTTTTTGTTAATTT+AGG + chr4_1:15502649-15502668 Msa0537300:intron 20.0%
!!! CTGGAAATTTTAATTTTTTG+TGG + chr4_1:15502853-15502872 Msa0537300:intron 20.0%
!! TCAGATTCTTGAAAAAAAAA+TGG + chr4_1:15502961-15502980 Msa0537300:intron 20.0%
!! CAAAAACACATTATTATGAA+AGG - chr4_1:15503010-15503029 None:intergenic 20.0%
!!! ATAAACGATTGAAAATTTTC+AGG - chr4_1:15503323-15503342 None:intergenic 20.0%
!!! TCACTTAGTTTTATATAACT+TGG + chr4_1:15503478-15503497 Msa0537300:intron 20.0%
!!! TTTTGGGATTAAATATAACA+TGG + chr4_1:15503729-15503748 Msa0537300:CDS 20.0%
!! AAATATAACATGGAAAATAG+TGG + chr4_1:15503739-15503758 Msa0537300:CDS 20.0%
!!! TGTGTATTCATATATTTTGT+TGG - chr4_1:15503785-15503804 None:intergenic 20.0%
!!! TTACTTTGTTCCATTTTTAA+AGG + chr4_1:15503967-15503986 Msa0537300:intron 20.0%
!!! TATCACTAAATTTGTTTTGA+TGG + chr4_1:15504011-15504030 Msa0537300:intron 20.0%
!!! ACTTTTCAAAACAAAAGTTA+AGG - chr4_1:15504136-15504155 None:intergenic 20.0%
!! AAAATAGTTGAAGAACTAAA+TGG + chr4_1:15504169-15504188 Msa0537300:intron 20.0%
!! AGATTTCTATCTTTATTCAT+AGG + chr4_1:15504795-15504814 Msa0537300:intron 20.0%
!! TTTACCTATCTATATTTGTA+TGG - chr4_1:15505016-15505035 None:intergenic 20.0%
!! TACAATTTATAAATTGGCTA+TGG + chr4_1:15505183-15505202 Msa0537300:intron 20.0%
!! TTTATATAAACAAACATCGA+AGG - chr4_1:15506148-15506167 None:intergenic 20.0%
!!! AAATTTGATTGTAGGAATTT+TGG + chr4_1:15506173-15506192 Msa0537300:intron 20.0%
!! ACATTAATATATGTTATGGT+AGG + chr4_1:15506595-15506614 Msa0537300:intron 20.0%
!! TTTAGAGAAATATGGAATAT+CGG - chr4_1:15506813-15506832 None:intergenic 20.0%
!!! TTGATTTGCTTTTCTAAAAA+GGG + chr4_1:15506859-15506878 Msa0537300:intron 20.0%
!! AAACTTATAAAAGCTATTAG+AGG + chr4_1:15506912-15506931 Msa0537300:intron 20.0%
!! AACTTATAAAAGCTATTAGA+GGG + chr4_1:15506913-15506932 Msa0537300:intron 20.0%
!!! CATATTGAGATTTTAAAGAT+GGG - chr4_1:15507366-15507385 None:intergenic 20.0%
!! TAGGTGATAAAATACAATTA+AGG - chr4_1:15507450-15507469 None:intergenic 20.0%
!!! TGCTTTAATTTTGCTAATTT+CGG + chr4_1:15507595-15507614 Msa0537300:intron 20.0%
!!! TAGTGTTATTATATACGTTA+TGG + chr4_1:15507725-15507744 Msa0537300:intron 20.0%
!!! TATGAAGACCTTTTTAATTT+TGG + chr4_1:15508004-15508023 Msa0537300:three_prime_UTR 20.0%
! TTTCTTTCAATCTGATGTTA+AGG + chr4_1:15502687-15502706 Msa0537300:intron 25.0%
! TTCTTTCAATCTGATGTTAA+GGG + chr4_1:15502688-15502707 Msa0537300:intron 25.0%
!!! GCATTTTTTTCTTCTTTTCT+GGG + chr4_1:15502721-15502740 Msa0537300:intron 25.0%
!!! TTGTTGTTGTTTTCTGAATT+AGG + chr4_1:15502914-15502933 Msa0537300:intron 25.0%
!!! TGTTGTTGTTTTCTGAATTA+GGG + chr4_1:15502915-15502934 Msa0537300:intron 25.0%
!!! AAAATGGAATTTTGTTGTCT+TGG + chr4_1:15502977-15502996 Msa0537300:intron 25.0%
!!! TAATGTGTTTTTGCTGATAT+TGG + chr4_1:15503017-15503036 Msa0537300:intron 25.0%
!!! ATTGGTAATGTTATGTGATT+TGG + chr4_1:15503035-15503054 Msa0537300:intron 25.0%
! TGGTTATGTTTATGATTGAT+AGG + chr4_1:15503055-15503074 Msa0537300:intron 25.0%
! TATGTTTATGATTGATAGGT+TGG + chr4_1:15503059-15503078 Msa0537300:intron 25.0%
!! ATTTTTCATTATGCTGTTCT+AGG + chr4_1:15503161-15503180 Msa0537300:intron 25.0%
!!! ATTTTTGGGATTATGTAGAA+AGG + chr4_1:15503185-15503204 Msa0537300:CDS 25.0%
! TAGAAAGGAAACAACTTAAA+TGG + chr4_1:15503200-15503219 Msa0537300:CDS 25.0%
! AATCGTTTATCTTTATCCAT+GGG + chr4_1:15503333-15503352 Msa0537300:intron 25.0%
!! AAATCTAAAGTTAAATCCCT+TGG - chr4_1:15503450-15503469 None:intergenic 25.0%
! AAAATTCTCCCAATGATAAA+TGG + chr4_1:15503583-15503602 Msa0537300:intron 25.0%
! TACCATTACCATTTATCATT+GGG - chr4_1:15503594-15503613 None:intergenic 25.0%
! TTACCATTACCATTTATCAT+TGG - chr4_1:15503595-15503614 None:intergenic 25.0%
!!! CTACATTAATTTATTTTCGC+AGG + chr4_1:15503865-15503884 Msa0537300:intron 25.0%
! TTTAGTGATACAATGTCTTA+AGG - chr4_1:15504001-15504020 None:intergenic 25.0%
!!! TTTGGTTTTGGTTCTAATAA+TGG + chr4_1:15504307-15504326 Msa0537300:intron 25.0%
!! AATTCTGGAAGAAATAAGAT+TGG - chr4_1:15504468-15504487 None:intergenic 25.0%
! TAACTCATATGAGTTAATTC+TGG - chr4_1:15504483-15504502 None:intergenic 25.0%
!! TCAACTTTTCCATTGAATTT+CGG + chr4_1:15504506-15504525 Msa0537300:CDS 25.0%
! TGATATTATATCTGCAAACA+TGG + chr4_1:15504904-15504923 Msa0537300:intron 25.0%
!!! ATTGAAGTATTTTGTCAAAG+TGG + chr4_1:15504988-15505007 Msa0537300:intron 25.0%
!!! TTGAAGTATTTTGTCAAAGT+GGG + chr4_1:15504989-15505008 Msa0537300:intron 25.0%
! AGTGAAAATACTAATCAGTT+AGG - chr4_1:15505230-15505249 None:intergenic 25.0%
!! TAACTGATTAGTATTTTCAC+TGG + chr4_1:15505229-15505248 Msa0537300:intron 25.0%
! GCATAAATTACTACACTAAA+AGG - chr4_1:15505566-15505585 None:intergenic 25.0%
! AAATATCCATATATGTCACT+TGG - chr4_1:15505715-15505734 None:intergenic 25.0%
!! AGTGAGTATAAAGCATTAAA+GGG - chr4_1:15505931-15505950 None:intergenic 25.0%
!! TAGTGAGTATAAAGCATTAA+AGG - chr4_1:15505932-15505951 None:intergenic 25.0%
!! TTTTGTATTCAATTGTTTGC+AGG - chr4_1:15505958-15505977 None:intergenic 25.0%
! TTTATTAGATAGCTGAAAGA+CGG - chr4_1:15506461-15506480 None:intergenic 25.0%
! TATTATATGGAAGGAAATAC+AGG + chr4_1:15506537-15506556 Msa0537300:intron 25.0%
! CAAATTCTGTTTCAAATACA+GGG - chr4_1:15506566-15506585 None:intergenic 25.0%
! AAGTTTAACAGTTTAAAGGA+TGG - chr4_1:15506623-15506642 None:intergenic 25.0%
! CCAAAAGTTTAACAGTTTAA+AGG - chr4_1:15506627-15506646 None:intergenic 25.0%
!! CCTTTAAACTGTTAAACTTT+TGG + chr4_1:15506624-15506643 Msa0537300:intron 25.0%
! AAACATGTTAAACTCTTATC+TGG + chr4_1:15506746-15506765 Msa0537300:intron 25.0%
! AATTATTCTAGCATAGATGT+AGG + chr4_1:15506787-15506806 Msa0537300:intron 25.0%
!!! GTTGATTTGCTTTTCTAAAA+AGG + chr4_1:15506858-15506877 Msa0537300:intron 25.0%
!! CATTTGGAATATGTTTGATT+TGG + chr4_1:15506962-15506981 Msa0537300:intron 25.0%
! ACTGTAAACTAATCAAACAT+GGG - chr4_1:15507016-15507035 None:intergenic 25.0%
! AACTGTAAACTAATCAAACA+TGG - chr4_1:15507017-15507036 None:intergenic 25.0%
! AAAATTTACAGTGGCTTAAT+GGG - chr4_1:15507052-15507071 None:intergenic 25.0%
! AAAAATTTACAGTGGCTTAA+TGG - chr4_1:15507053-15507072 None:intergenic 25.0%
! AATGAAAGAACATTTGACAA+TGG - chr4_1:15507329-15507348 None:intergenic 25.0%
!!! GCATATTGAGATTTTAAAGA+TGG - chr4_1:15507367-15507386 None:intergenic 25.0%
! TTAGCAAAATTAAAGCATGT+GGG - chr4_1:15507592-15507611 None:intergenic 25.0%
! ATTAGCAAAATTAAAGCATG+TGG - chr4_1:15507593-15507612 None:intergenic 25.0%
! GCAGCAAAATTTAAAGATAA+GGG - chr4_1:15507688-15507707 None:intergenic 25.0%
! GCTATTATTGAATAAACAAC+AGG - chr4_1:15508073-15508092 None:intergenic 25.0%
! TCTCTATTTCGTTTAAGAAA+TGG - chr4_1:15508111-15508130 None:intergenic 25.0%
!!! CGCATTTTTTTCTTCTTTTC+TGG + chr4_1:15502720-15502739 Msa0537300:intron 30.0%
! CTTCTTTTCTGGGTTAATTT+CGG + chr4_1:15502731-15502750 Msa0537300:intron 30.0%
!! GGTAATTTGCTAATGTTTGA+TGG + chr4_1:15502805-15502824 Msa0537300:intron 30.0%
! ATTAGGGTATGCTTGAATTT+TGG + chr4_1:15502931-15502950 Msa0537300:intron 30.0%
! TTAGGGTATGCTTGAATTTT+GGG + chr4_1:15502932-15502951 Msa0537300:intron 30.0%
!! GAATTTTGTTGTCTTGGTTA+AGG + chr4_1:15502983-15503002 Msa0537300:intron 30.0%
!! TATGCTGTTCTAGGTATTTT+TGG + chr4_1:15503170-15503189 Msa0537300:intron 30.0%
!! ATGCTGTTCTAGGTATTTTT+GGG + chr4_1:15503171-15503190 Msa0537300:intron 30.0%
CAATCGTTTATCTTTATCCA+TGG + chr4_1:15503332-15503351 Msa0537300:intron 30.0%
! ATCATTGGGAGAATTTTTGA+GGG - chr4_1:15503580-15503599 None:intergenic 30.0%
! TATCATTGGGAGAATTTTTG+AGG - chr4_1:15503581-15503600 None:intergenic 30.0%
! CAGTAACAATCATTTAGAGT+TGG - chr4_1:15503685-15503704 None:intergenic 30.0%
AAATGATTGTTACTGTCAAC+TGG + chr4_1:15503690-15503709 Msa0537300:intron 30.0%
! TTTCCATTATGCAGGATTTT+GGG + chr4_1:15503713-15503732 Msa0537300:intron 30.0%
TGAATACACAACAACAATCA+AGG + chr4_1:15503795-15503814 Msa0537300:CDS 30.0%
!! CATTAATTTATTTTCGCAGG+TGG + chr4_1:15503868-15503887 Msa0537300:intron 30.0%
! GGAAACACAACCTTTAAAAA+TGG - chr4_1:15503980-15503999 None:intergenic 30.0%
AACCTGAAGTTATTGTTACA+AGG + chr4_1:15504102-15504121 Msa0537300:intron 30.0%
ATAGTTGAAGAACTAAATGG+CGG + chr4_1:15504172-15504191 Msa0537300:intron 30.0%
TCATGAGCAAACACAATAAA+AGG - chr4_1:15504240-15504259 None:intergenic 30.0%
! TACCTTGTCTTTGTTACTTA+TGG + chr4_1:15504277-15504296 Msa0537300:intron 30.0%
GTTCTAATATGATTTGAGTC+TGG + chr4_1:15504380-15504399 Msa0537300:intron 30.0%
AAATGGTTTCCGAAATTCAA+TGG - chr4_1:15504518-15504537 None:intergenic 30.0%
ATTCATAGGAAAACACAAAG+AGG + chr4_1:15504809-15504828 Msa0537300:intron 30.0%
!! TGAAGTATTTTGTCAAAGTG+GGG + chr4_1:15504990-15505009 Msa0537300:intron 30.0%
! AAACCTCTAGATTTTGTGAA+GGG - chr4_1:15505156-15505175 None:intergenic 30.0%
! AAAACCTCTAGATTTTGTGA+AGG - chr4_1:15505157-15505176 None:intergenic 30.0%
ATACTAATCAGTTAGGAAGA+GGG - chr4_1:15505223-15505242 None:intergenic 30.0%
AATACTAATCAGTTAGGAAG+AGG - chr4_1:15505224-15505243 None:intergenic 30.0%
TTGCAGCATAATATAAGAAG+AGG - chr4_1:15505421-15505440 None:intergenic 30.0%
!! AATAAGTGTGAATGGGTTAT+GGG - chr4_1:15505888-15505907 None:intergenic 30.0%
!! AAATAAGTGTGAATGGGTTA+TGG - chr4_1:15505889-15505908 None:intergenic 30.0%
!! AACCCATTCACACTTATTTT+TGG + chr4_1:15505890-15505909 Msa0537300:intron 30.0%
TGCCAAAAATAAGTGTGAAT+GGG - chr4_1:15505895-15505914 None:intergenic 30.0%
TTGCCAAAAATAAGTGTGAA+TGG - chr4_1:15505896-15505915 None:intergenic 30.0%
!!! ACACTTATTTTTGGCAATTC+TGG + chr4_1:15505899-15505918 Msa0537300:intron 30.0%
!!! CACTTATTTTTGGCAATTCT+GGG + chr4_1:15505900-15505919 Msa0537300:intron 30.0%
!!! ACTTATTTTTGGCAATTCTG+GGG + chr4_1:15505901-15505920 Msa0537300:intron 30.0%
! GTGAGTATAAAGCATTAAAG+GGG - chr4_1:15505930-15505949 None:intergenic 30.0%
! TTTTCCATCATGACAAAGAA+AGG + chr4_1:15506013-15506032 Msa0537300:intron 30.0%
TTTCCATCATGACAAAGAAA+GGG + chr4_1:15506014-15506033 Msa0537300:intron 30.0%
GGAATCACAGCAATATAATT+GGG + chr4_1:15506380-15506399 Msa0537300:CDS 30.0%
CCAAATTCTGTTTCAAATAC+AGG - chr4_1:15506567-15506586 None:intergenic 30.0%
! CCTGTATTTGAAACAGAATT+TGG + chr4_1:15506564-15506583 Msa0537300:intron 30.0%
! TGTTAAACTTTTGGCATGAA+TGG + chr4_1:15506633-15506652 Msa0537300:intron 30.0%
ACAAGGGTTGAAAACAATTT+CGG - chr4_1:15506661-15506680 None:intergenic 30.0%
ATAAAACAACTGACCTCTAT+TGG - chr4_1:15506717-15506736 None:intergenic 30.0%
!! GGTCAGTTGTTTTATATTGA+TGG + chr4_1:15506722-15506741 Msa0537300:intron 30.0%
AAAGACGGTTTAGAGAAATA+TGG - chr4_1:15506821-15506840 None:intergenic 30.0%
ATATGCTACTGTCATTAACT+TGG + chr4_1:15506936-15506955 Msa0537300:intron 30.0%
TTGCTGTATTTCTTCCAAAA+GGG - chr4_1:15507212-15507231 None:intergenic 30.0%
! TTTGCTGTATTTCTTCCAAA+AGG - chr4_1:15507213-15507232 None:intergenic 30.0%
CTACTACTGTGTCAATAATT+CGG - chr4_1:15507243-15507262 None:intergenic 30.0%
ATGAATATGGGAGAAGAATT+AGG - chr4_1:15507519-15507538 None:intergenic 30.0%
GGAAACTTGTCTATGAATAT+GGG - chr4_1:15507531-15507550 None:intergenic 30.0%
TGGAAACTTGTCTATGAATA+TGG - chr4_1:15507532-15507551 None:intergenic 30.0%
AAAATGTTCCATTATCTCAC+CGG - chr4_1:15507563-15507582 None:intergenic 30.0%
TAGCAAAATTAAAGCATGTG+GGG - chr4_1:15507591-15507610 None:intergenic 30.0%
! GTATTTTCTCTTCCAAATAG+TGG + chr4_1:15507632-15507651 Msa0537300:intron 30.0%
CGCAGCAAAATTTAAAGATA+AGG - chr4_1:15507689-15507708 None:intergenic 30.0%
TTATATACGTTATGGCAGTA+AGG + chr4_1:15507733-15507752 Msa0537300:intron 30.0%
TATATACGTTATGGCAGTAA+GGG + chr4_1:15507734-15507753 Msa0537300:intron 30.0%
AGGTTGTGAGAAATTACATA+AGG - chr4_1:15507804-15507823 None:intergenic 30.0%
! AGTCTTTGCTATATCCTTAA+GGG - chr4_1:15507831-15507850 None:intergenic 30.0%
! AAGTCTTTGCTATATCCTTA+AGG - chr4_1:15507832-15507851 None:intergenic 30.0%
! AATAATGTTTGAAACCTCCT+AGG - chr4_1:15508030-15508049 None:intergenic 30.0%
ATTTCGTTTAAGAAATGGAG+AGG - chr4_1:15508106-15508125 None:intergenic 30.0%
TGATCTCAGATGAACAAAAG+AGG - chr4_1:15502604-15502623 None:intergenic 35.0%
!!! GGATTGGTTTTTATGAGTTC+TGG + chr4_1:15502834-15502853 Msa0537300:intron 35.0%
TTGTTGCTGAGATTTGAGAA+TGG + chr4_1:15502878-15502897 Msa0537300:intron 35.0%
! TTATGATTGATAGGTTGGAG+TGG + chr4_1:15503064-15503083 Msa0537300:intron 35.0%
! GACATTTTGTATCCAAGAGA+AGG + chr4_1:15503086-15503105 Msa0537300:intron 35.0%
TAACAAATGGTACCTTCTCT+TGG - chr4_1:15503101-15503120 None:intergenic 35.0%
! AATGGTTTGTGTCAAGTGAA+TGG + chr4_1:15503218-15503237 Msa0537300:CDS 35.0%
!! CAAGGCTTCAAGTTGATAAT+GGG + chr4_1:15503281-15503300 Msa0537300:intron 35.0%
AGTTAAATCCCTTGGTTACA+GGG - chr4_1:15503442-15503461 None:intergenic 35.0%
AAGTTAAATCCCTTGGTTAC+AGG - chr4_1:15503443-15503462 None:intergenic 35.0%
CTCCCAATGATAAATGGTAA+TGG + chr4_1:15503589-15503608 Msa0537300:intron 35.0%
!! AATGGTAATGGTAATGTCTC+AGG + chr4_1:15503601-15503620 Msa0537300:intron 35.0%
! GTTTCCATTATGCAGGATTT+TGG + chr4_1:15503712-15503731 Msa0537300:intron 35.0%
AATCCCAAAATCCTGCATAA+TGG - chr4_1:15503719-15503738 None:intergenic 35.0%
!!! ATTTTGTTGGTAATTCCCTC+TGG - chr4_1:15503772-15503791 None:intergenic 35.0%
TAACGTTATGACACCTACTA+TGG - chr4_1:15503900-15503919 None:intergenic 35.0%
CAAATGTACCTTGTTCTTCT+CGG - chr4_1:15503929-15503948 None:intergenic 35.0%
CACCTTGTAACAATAACTTC+AGG - chr4_1:15504107-15504126 None:intergenic 35.0%
CACCATAAGTAACAAAGACA+AGG - chr4_1:15504282-15504301 None:intergenic 35.0%
! CTTGTCTTTGTTACTTATGG+TGG + chr4_1:15504280-15504299 Msa0537300:intron 35.0%
! GTTACTTATGGTGGTTGTTT+TGG + chr4_1:15504289-15504308 Msa0537300:intron 35.0%
!!! TATGGTGGTTGTTTTGGTTT+TGG + chr4_1:15504295-15504314 Msa0537300:intron 35.0%
AATGGCTAATGATTTGAGTC+TGG + chr4_1:15504325-15504344 Msa0537300:intron 35.0%
!! TTTGAGTCTGGTGTTACTTA+TGG + chr4_1:15504337-15504356 Msa0537300:intron 35.0%
!! TTTGAGTCTGGTGTTACTTA+TGG + chr4_1:15504337-15504356 Msa0537300:intron 35.0%
! GGTGGTCGTATGTTAATTTT+TGG + chr4_1:15504413-15504432 Msa0537300:intron 35.0%
AAACTCATGCAGACATGTAA+AGG - chr4_1:15504555-15504574 None:intergenic 35.0%
! ACCTCAGTTGATATTCTACA+CGG + chr4_1:15504859-15504878 Msa0537300:CDS 35.0%
ACACGGTTGTTTGAATTGTA+AGG + chr4_1:15504876-15504895 Msa0537300:intron 35.0%
AAAAACAGTCTACTGCTTGA+TGG + chr4_1:15505097-15505116 Msa0537300:intron 35.0%
! AACCTCTAGATTTTGTGAAG+GGG - chr4_1:15505155-15505174 None:intergenic 35.0%
TACTAATCAGTTAGGAAGAG+GGG - chr4_1:15505222-15505241 None:intergenic 35.0%
! GGCATTGGAACATATTAATG+AGG + chr4_1:15505327-15505346 Msa0537300:CDS 35.0%
TGAAAGCAGAAGCTCTTTAA+TGG + chr4_1:15505389-15505408 Msa0537300:intron 35.0%
!! TTATGCCAATTGATTCGAGT+TGG + chr4_1:15505580-15505599 Msa0537300:intron 35.0%
GTTAACCAACTCGAATCAAT+TGG - chr4_1:15505588-15505607 None:intergenic 35.0%
ATATCAGCTGAGTAGATATG+AGG + chr4_1:15505619-15505638 Msa0537300:intron 35.0%
AAGTTGTCTACTTCAGACTA+TGG + chr4_1:15505747-15505766 Msa0537300:intron 35.0%
! AAGCTTTTCTAGGTGAAAGT+AGG - chr4_1:15505795-15505814 None:intergenic 35.0%
!!! CTTATTTTTGGCAATTCTGG+GGG + chr4_1:15505902-15505921 Msa0537300:intron 35.0%
TTTCCCTTTCTTTGTCATGA+TGG - chr4_1:15506020-15506039 None:intergenic 35.0%
CATGACAAAGAAAGGGAAAA+AGG + chr4_1:15506021-15506040 Msa0537300:intron 35.0%
ACACTTTATCGACCAAGAAA+AGG + chr4_1:15506102-15506121 Msa0537300:intron 35.0%
! TCTCAAAGATAGCCTTTTCT+TGG - chr4_1:15506117-15506136 None:intergenic 35.0%
! GAATTTTGGATGATGCCATT+TGG + chr4_1:15506187-15506206 Msa0537300:CDS 35.0%
CTTTGCACTGAAGTATAACA+TGG + chr4_1:15506285-15506304 Msa0537300:CDS 35.0%
TTATAAGCCCATTTCTTGAG+AGG + chr4_1:15506311-15506330 Msa0537300:CDS 35.0%
TATAAGCCCATTTCTTGAGA+GGG + chr4_1:15506312-15506331 Msa0537300:CDS 35.0%
TCATATCCCTCTCAAGAAAT+GGG - chr4_1:15506321-15506340 None:intergenic 35.0%
TTCATATCCCTCTCAAGAAA+TGG - chr4_1:15506322-15506341 None:intergenic 35.0%
GGGAATCACAGCAATATAAT+TGG + chr4_1:15506379-15506398 Msa0537300:CDS 35.0%
GCAATATAATTGGGATACAC+AGG + chr4_1:15506389-15506408 Msa0537300:CDS 35.0%
TATAATTGGGATACACAGGA+AGG + chr4_1:15506393-15506412 Msa0537300:CDS 35.0%
CTTTCTACTTCCACTTCTAA+TGG + chr4_1:15506429-15506448 Msa0537300:intron 35.0%
! CACTGAGAGTGCATATTATA+TGG + chr4_1:15506524-15506543 Msa0537300:intron 35.0%
! GAGAGTGCATATTATATGGA+AGG + chr4_1:15506528-15506547 Msa0537300:intron 35.0%
TGAAGCAAGTACTTCAAAGA+CGG - chr4_1:15506836-15506855 None:intergenic 35.0%
! CAATAACCGATCTGATGTTT+TGG + chr4_1:15507139-15507158 Msa0537300:intron 35.0%
CAAAGACCAAAACATCAGAT+CGG - chr4_1:15507148-15507167 None:intergenic 35.0%
GATATAGAGTTTGTGTACTG+TGG + chr4_1:15507173-15507192 Msa0537300:intron 35.0%
ATCTCAATATGCTTCACTAC+AGG + chr4_1:15507375-15507394 Msa0537300:intron 35.0%
AATATGCTTCACTACAGGTA+TGG + chr4_1:15507380-15507399 Msa0537300:intron 35.0%
GAAGAATTAGGATAGTTTGG+AGG - chr4_1:15507507-15507526 None:intergenic 35.0%
GGAGAAGAATTAGGATAGTT+TGG - chr4_1:15507510-15507529 None:intergenic 35.0%
AAATGTTCCATTATCTCACC+GGG - chr4_1:15507562-15507581 None:intergenic 35.0%
AGCAAAATTAAAGCATGTGG+GGG - chr4_1:15507590-15507609 None:intergenic 35.0%
ATATACGTTATGGCAGTAAG+GGG + chr4_1:15507735-15507754 Msa0537300:intron 35.0%
ACCAAATTGTTGTGCATACT+CGG - chr4_1:15507882-15507901 None:intergenic 35.0%
!!! GACCTTTTTAATTTTGGCCT+AGG + chr4_1:15508010-15508029 Msa0537300:three_prime_UTR 35.0%
CTCCTAGGCCAAAATTAAAA+AGG - chr4_1:15508015-15508034 None:intergenic 35.0%
!!! CTTTTTAATTTTGGCCTAGG+AGG + chr4_1:15508013-15508032 Msa0537300:three_prime_UTR 35.0%
GGGATTGGATTGAAGATGAT+CGG + chr4_1:15502518-15502537 Msa0537300:CDS 40.0%
ATGAAGATCCGTGTGTTCAA+CGG - chr4_1:15502564-15502583 None:intergenic 40.0%
TTGAACACACGGATCTTCAT+GGG + chr4_1:15502564-15502583 Msa0537300:CDS 40.0%
! GCTAATGTTTGATGGCAGTT+TGG + chr4_1:15502813-15502832 Msa0537300:intron 40.0%
! TGTTTGATGGCAGTTTGGAT+TGG + chr4_1:15502818-15502837 Msa0537300:intron 40.0%
CCATTATCAACTTGAAGCCT+TGG - chr4_1:15503283-15503302 None:intergenic 40.0%
!! CCAAGGCTTCAAGTTGATAA+TGG + chr4_1:15503280-15503299 Msa0537300:intron 40.0%
! TCAACTGGTTTCCATTATGC+AGG + chr4_1:15503705-15503724 Msa0537300:intron 40.0%
TATAGTAGCCGAGAAGAACA+AGG + chr4_1:15503918-15503937 Msa0537300:intron 40.0%
AGAACTTTGTTCCTGCAACA+AGG + chr4_1:15504052-15504071 Msa0537300:intron 40.0%
GAACTTTGTTCCTGCAACAA+GGG + chr4_1:15504053-15504072 Msa0537300:intron 40.0%
! ACAATAACTTCAGGTTCTGC+AGG - chr4_1:15504098-15504117 None:intergenic 40.0%
ACCGTGTAGAATATCAACTG+AGG - chr4_1:15504863-15504882 None:intergenic 40.0%
GGGGCCATACAAATATAGAT+AGG + chr4_1:15505009-15505028 Msa0537300:intron 40.0%
TTCCCCTTCACAAAATCTAG+AGG + chr4_1:15505150-15505169 Msa0537300:intron 40.0%
ACTAATCAGTTAGGAAGAGG+GGG - chr4_1:15505221-15505240 None:intergenic 40.0%
AGCAGAAGCTCTTTAATGGT+TGG + chr4_1:15505393-15505412 Msa0537300:intron 40.0%
AATGATTGTCCAATTGCTGC+TGG + chr4_1:15505686-15505705 Msa0537300:intron 40.0%
TGGTTGCCAAGTGACATATA+TGG + chr4_1:15505706-15505725 Msa0537300:intron 40.0%
TTGTCTACTTCAGACTATGG+AGG + chr4_1:15505750-15505769 Msa0537300:intron 40.0%
TCACCTAGAAAAGCTTGAAG+AGG + chr4_1:15505799-15505818 Msa0537300:intron 40.0%
CACCTAGAAAAGCTTGAAGA+GGG + chr4_1:15505800-15505819 Msa0537300:intron 40.0%
GCTGGAACAACAAGAAGAAA+AGG + chr4_1:15505832-15505851 Msa0537300:intron 40.0%
TCTCGTGTAGAGAAACCAAA+TGG - chr4_1:15506205-15506224 None:intergenic 40.0%
GAATTTGCAGAACCTGTTGA+CGG + chr4_1:15506238-15506257 Msa0537300:CDS 40.0%
AATTTGCAGAACCTGTTGAC+GGG + chr4_1:15506239-15506258 Msa0537300:CDS 40.0%
TGTTCAAAATAACCTCTCCG+TGG - chr4_1:15506345-15506364 None:intergenic 40.0%
ACGGTCTATTCCATTAGAAG+TGG - chr4_1:15506442-15506461 None:intergenic 40.0%
CACAACCATGTAACAAGAGT+CGG + chr4_1:15506495-15506514 Msa0537300:intron 40.0%
TGAAGCAATGTAGCCAATAG+AGG + chr4_1:15506701-15506720 Msa0537300:intron 40.0%
! TGCTACTGTCATTAACTTGG+TGG + chr4_1:15506939-15506958 Msa0537300:intron 40.0%
! GTCATTAACTTGGTGGCATT+TGG + chr4_1:15506946-15506965 Msa0537300:intron 40.0%
!!! CGATCTGATGTTTTGGTCTT+TGG + chr4_1:15507146-15507165 Msa0537300:intron 40.0%
ACAAGTTTCCAGTTGAATCC+CGG + chr4_1:15507541-15507560 Msa0537300:CDS 40.0%
CAAAATTAAAGCATGTGGGG+GGG - chr4_1:15507588-15507607 None:intergenic 40.0%
GCAAAATTAAAGCATGTGGG+GGG - chr4_1:15507589-15507608 None:intergenic 40.0%
TTGTGTAGACTGCCACTATT+TGG - chr4_1:15507647-15507666 None:intergenic 40.0%
GCTATATCCTTAAGGGACAT+AGG - chr4_1:15507824-15507843 None:intergenic 40.0%
TCCGAGTATGCACAACAATT+TGG + chr4_1:15507878-15507897 Msa0537300:CDS 40.0%
GAGTATGCACAACAATTTGG+TGG + chr4_1:15507881-15507900 Msa0537300:CDS 40.0%
! TATGCACAACAATTTGGTGG+AGG + chr4_1:15507884-15507903 Msa0537300:CDS 40.0%
!! GGAACATTCAGCTCTAAGTA+TGG + chr4_1:15507905-15507924 Msa0537300:CDS 40.0%
!! TCAGCTCTAAGTATGGAGAA+TGG + chr4_1:15507912-15507931 Msa0537300:CDS 40.0%
! AGTACCGGAGAAGAATTCTC+CGG + chr4_1:15502491-15502510 Msa0537300:CDS 45.0%
GTTGAACACACGGATCTTCA+TGG + chr4_1:15502563-15502582 Msa0537300:CDS 45.0%
TCAAGTGAATGGTCTCCAGA+TGG + chr4_1:15503229-15503248 Msa0537300:CDS 45.0%
CAAGTGAATGGTCTCCAGAT+GGG + chr4_1:15503230-15503249 Msa0537300:CDS 45.0%
GTCATCAAATAGCACCCATC+TGG - chr4_1:15503247-15503266 None:intergenic 45.0%
TGACAGCAAACACAACTCCA+AGG + chr4_1:15503263-15503282 Msa0537300:CDS 45.0%
! CAACAAAATCAGAGTGCCCA+TGG - chr4_1:15503352-15503371 None:intergenic 45.0%
ACTTCTCTCCCTGTAACCAA+GGG + chr4_1:15503431-15503450 Msa0537300:intron 45.0%
CAAGTCGTGAGCAGAACATT+TGG - chr4_1:15503844-15503863 None:intergenic 45.0%
CAAATGTTCTGCTCACGACT+TGG + chr4_1:15503842-15503861 Msa0537300:intron 45.0%
CAGGTGGATATCACCATAGT+AGG + chr4_1:15503884-15503903 Msa0537300:intron 45.0%
! ATGTTTTCCACCCTTGTTGC+AGG - chr4_1:15504066-15504085 None:intergenic 45.0%
!! GAGTCTGGTGTTACTTATGG+TGG + chr4_1:15504340-15504359 Msa0537300:intron 45.0%
!! GAGTCTGGTGTTACTTATGG+TGG + chr4_1:15504340-15504359 Msa0537300:intron 45.0%
AGGCTCTGTGAAAGTCGAAA+TGG - chr4_1:15504535-15504554 None:intergenic 45.0%
ACCTGAAGACGATGACAATG+CGG - chr4_1:15504586-15504605 None:intergenic 45.0%
AACATCCTCTGATGCAGAGA+GGG + chr4_1:15505306-15505325 Msa0537300:CDS 45.0%
TCAGCTGAGTAGATATGAGG+AGG + chr4_1:15505622-15505641 Msa0537300:intron 45.0%
! GACCCTCTTCAAGCTTTTCT+AGG - chr4_1:15505805-15505824 None:intergenic 45.0%
TGAAGAGGGTCTTTCTTTGC+TGG + chr4_1:15505814-15505833 Msa0537300:intron 45.0%
!! AGTGTGAATGGGTTATGGGA+TGG - chr4_1:15505884-15505903 None:intergenic 45.0%
TCTCTACACGAGAGAAGAAG+TGG + chr4_1:15506212-15506231 Msa0537300:CDS 45.0%
ATTTGCAGAACCTGTTGACG+GGG + chr4_1:15506240-15506259 Msa0537300:CDS 45.0%
CTTGAGAGGGATATGAACCA+CGG + chr4_1:15506325-15506344 Msa0537300:CDS 45.0%
TTGAACACTGCCGTTGTGAT+TGG + chr4_1:15506358-15506377 Msa0537300:CDS 45.0%
TGAACACTGCCGTTGTGATT+GGG + chr4_1:15506359-15506378 Msa0537300:CDS 45.0%
GCTGTGATTCCCAATCACAA+CGG - chr4_1:15506371-15506390 None:intergenic 45.0%
AGTCTCCGACTCTTGTTACA+TGG - chr4_1:15506503-15506522 None:intergenic 45.0%
TTCAGTGAGTTCACCAACAG+TGG - chr4_1:15506685-15506704 None:intergenic 45.0%
TAGAGTTTGTGTACTGTGGC+AGG + chr4_1:15507177-15507196 Msa0537300:intron 45.0%
! GCAGGTTAATCATGCCCTTT+TGG + chr4_1:15507195-15507214 Msa0537300:intron 45.0%
AGGCTGAATAGGTGACTGTT+AGG - chr4_1:15507469-15507488 None:intergenic 45.0%
TTATCTCACCGGGATTCAAC+TGG - chr4_1:15507552-15507571 None:intergenic 45.0%
GTTGAATCCCGGTGAGATAA+TGG + chr4_1:15507552-15507571 Msa0537300:intron 45.0%
TTATGGCAGTAAGGGGAATG+AGG + chr4_1:15507742-15507761 Msa0537300:intron 45.0%
CTCACAACCTATGTCCCTTA+AGG + chr4_1:15507814-15507833 Msa0537300:CDS 45.0%
CTCTAAGTATGGAGAATGGC+AGG + chr4_1:15507916-15507935 Msa0537300:CDS 45.0%
AATGGCAGGAGTTCACATCT+TGG + chr4_1:15507930-15507949 Msa0537300:CDS 45.0%
ATGGCAGGAGTTCACATCTT+GGG + chr4_1:15507931-15507950 Msa0537300:CDS 45.0%
!!! TTTATAAAATTATTTGAAAT+TGG + chr4_1:15504939-15504958 Msa0537300:intron 5.0%
AGTACCTGAGAAGAAGTCGC+CGG + chr4_1:15502457-15502476 Msa0537300:CDS 50.0%
AAGATCCGTGTGTTCAACGG+CGG - chr4_1:15502561-15502580 None:intergenic 50.0%
AACACACGGATCTTCATGGG+AGG + chr4_1:15502567-15502586 Msa0537300:CDS 50.0%
GACTTCTCTCCCTGTAACCA+AGG + chr4_1:15503430-15503449 Msa0537300:intron 50.0%
!! AAATAGTGGACCTGCACCAG+AGG + chr4_1:15503753-15503772 Msa0537300:CDS 50.0%
!! AATAGTGGACCTGCACCAGA+GGG + chr4_1:15503754-15503773 Msa0537300:CDS 50.0%
! TTGGTAATTCCCTCTGGTGC+AGG - chr4_1:15503766-15503785 None:intergenic 50.0%
CTTTGTTCCTGCAACAAGGG+TGG + chr4_1:15504056-15504075 Msa0537300:CDS 50.0%
TCCGCATTGTCATCGTCTTC+AGG + chr4_1:15504582-15504601 Msa0537300:CDS 50.0%
! TGCAAACATGGCTCTGCCTT+AGG + chr4_1:15504916-15504935 Msa0537300:intron 50.0%
AATCAGTTAGGAAGAGGGGG+TGG - chr4_1:15505218-15505237 None:intergenic 50.0%
GAACATCCTCTGATGCAGAG+AGG + chr4_1:15505305-15505324 Msa0537300:CDS 50.0%
ACTTGGCAACCAGCAGCAAT+TGG - chr4_1:15505698-15505717 None:intergenic 50.0%
! TCAGTTGATTCCCCGTCAAC+AGG - chr4_1:15506253-15506272 None:intergenic 50.0%
! TTCAACCCTTGTGCCACTGT+TGG + chr4_1:15506669-15506688 Msa0537300:intron 50.0%
GTTCACCAACAGTGGCACAA+GGG - chr4_1:15506677-15506696 None:intergenic 50.0%
AGTTCACCAACAGTGGCACA+AGG - chr4_1:15506678-15506697 None:intergenic 50.0%
!! AAAGATGGGCTGAGAGACAC+AGG - chr4_1:15507352-15507371 None:intergenic 50.0%
AGCAAGCGTAGAGGCTGAAT+AGG - chr4_1:15507480-15507499 None:intergenic 50.0%
TATTCAGCCTCTACGCTTGC+TGG + chr4_1:15507479-15507498 Msa0537300:CDS 50.0%
ACTTGTGATCCTACTGCTCG+CGG + chr4_1:15507848-15507867 Msa0537300:CDS 50.0%
GAAATAACACCGCGAGCAGT+AGG - chr4_1:15507860-15507879 None:intergenic 50.0%
ACCGGAGAAGAATTCTCCGG+CGG + chr4_1:15502494-15502513 Msa0537300:CDS 55.0%
ACCGCCGGAGAATTCTTCTC+CGG - chr4_1:15502498-15502517 None:intergenic 55.0%
GAGAAGAATTCTCCGGCGGT+GGG + chr4_1:15502498-15502517 Msa0537300:CDS 55.0%
CTTCAATCCAATCCCACCGC+CGG - chr4_1:15502513-15502532 None:intergenic 55.0%
TGTCTCCGCCGTTGAACACA+CGG + chr4_1:15502553-15502572 Msa0537300:CDS 55.0%
CAATGCCCTCTCTGCATCAG+AGG - chr4_1:15505314-15505333 None:intergenic 55.0%
! CTCTGATGCAGAGAGGGCAT+TGG + chr4_1:15505312-15505331 Msa0537300:CDS 55.0%
GAGGGATATGAACCACGGAG+AGG + chr4_1:15506330-15506349 Msa0537300:CDS 55.0%
! CTGCTGCTGAGTGGGTTCAT+GGG + chr4_1:15507302-15507321 Msa0537300:intron 55.0%
GAGAAGAAGTTGCCGGCGGT+GGG + chr4_1:15502430-15502449 Msa0537300:CDS 60.0%
ACCTGAGAAGAAGTCGCCGG+CGG + chr4_1:15502460-15502479 Msa0537300:CDS 60.0%
GGAGAAGAATTCTCCGGCGG+TGG + chr4_1:15502497-15502516 Msa0537300:CDS 60.0%
GAATTCTCCGGCGGTGGGAT+TGG + chr4_1:15502503-15502522 Msa0537300:CDS 60.0%
AGCTGCTGCTGCTGCTGAGT+GGG + chr4_1:15507294-15507313 Msa0537300:intron 60.0%
! GCTGCTGCTGAGTGGGTTCA+TGG + chr4_1:15507301-15507320 Msa0537300:intron 60.0%
GGAGGAACCAGCAAGCGTAG+AGG - chr4_1:15507489-15507508 None:intergenic 60.0%
GGAGAAGAAGTTGCCGGCGG+TGG + chr4_1:15502429-15502448 Msa0537300:CDS 65.0%
AAGAAGTTGCCGGCGGTGGG+AGG + chr4_1:15502433-15502452 Msa0537300:CDS 65.0%
AGAAGTTGCCGGCGGTGGGA+GGG + chr4_1:15502434-15502453 Msa0537300:CDS 65.0%
ACCGCCGGCGACTTCTTCTC+AGG - chr4_1:15502464-15502483 None:intergenic 65.0%
TGAGAAGAAGTCGCCGGCGG+TGG + chr4_1:15502463-15502482 Msa0537300:CDS 65.0%
GAGAAGAAGTCGCCGGCGGT+GGG + chr4_1:15502464-15502483 Msa0537300:CDS 65.0%
GTTCAACGGCGGAGACAGCG+AGG - chr4_1:15502550-15502569 None:intergenic 65.0%
CAGCTGCTGCTGCTGCTGAG+TGG + chr4_1:15507293-15507312 Msa0537300:intron 65.0%
CAGGTACTCCCTCCCACCGC+CGG - chr4_1:15502445-15502464 None:intergenic 70.0%
AAGAAGTCGCCGGCGGTGGG+AGG + chr4_1:15502467-15502486 Msa0537300:CDS 70.0%
AGAAGTCGCCGGCGGTGGGA+GGG + chr4_1:15502468-15502487 Msa0537300:CDS 70.0%
CCGGTACTCCCTCCCACCGC+CGG - chr4_1:15502479-15502498 None:intergenic 75.0%
! CCGGCGGTGGGAGGGAGTAC+CGG + chr4_1:15502442-15502461 Msa0537300:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 15502428 15508149 15502428 ID=Msa0537300;Name=Msa0537300
chr4_1 mRNA 15502428 15508149 15502428 ID=Msa0537300-mRNA-1;Parent=Msa0537300;Name=Msa0537300-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0.3|0.45|1|0.6|0.72|11|176|424
chr4_1 exon 15502428 15502588 15502428 ID=Msa0537300-mRNA-1:exon:4746;Parent=Msa0537300-mRNA-1
chr4_1 exon 15503183 15503291 15503183 ID=Msa0537300-mRNA-1:exon:4747;Parent=Msa0537300-mRNA-1
chr4_1 exon 15503727 15503846 15503727 ID=Msa0537300-mRNA-1:exon:4748;Parent=Msa0537300-mRNA-1
chr4_1 exon 15504054 15504109 15504054 ID=Msa0537300-mRNA-1:exon:4749;Parent=Msa0537300-mRNA-1
chr4_1 exon 15504484 15504603 15504484 ID=Msa0537300-mRNA-1:exon:4750;Parent=Msa0537300-mRNA-1
chr4_1 exon 15504817 15504880 15504817 ID=Msa0537300-mRNA-1:exon:4751;Parent=Msa0537300-mRNA-1
chr4_1 exon 15505259 15505350 15505259 ID=Msa0537300-mRNA-1:exon:4752;Parent=Msa0537300-mRNA-1
chr4_1 exon 15505398 15505410 15505398 ID=Msa0537300-mRNA-1:exon:4753;Parent=Msa0537300-mRNA-1
chr4_1 exon 15506187 15506414 15506187 ID=Msa0537300-mRNA-1:exon:4754;Parent=Msa0537300-mRNA-1
chr4_1 exon 15507474 15507562 15507474 ID=Msa0537300-mRNA-1:exon:4755;Parent=Msa0537300-mRNA-1
chr4_1 exon 15507751 15508149 15507751 ID=Msa0537300-mRNA-1:exon:4756;Parent=Msa0537300-mRNA-1
chr4_1 CDS 15502428 15502588 15502428 ID=Msa0537300-mRNA-1:cds;Parent=Msa0537300-mRNA-1
chr4_1 CDS 15503183 15503291 15503183 ID=Msa0537300-mRNA-1:cds;Parent=Msa0537300-mRNA-1
chr4_1 CDS 15503727 15503846 15503727 ID=Msa0537300-mRNA-1:cds;Parent=Msa0537300-mRNA-1
chr4_1 CDS 15504054 15504109 15504054 ID=Msa0537300-mRNA-1:cds;Parent=Msa0537300-mRNA-1
chr4_1 CDS 15504484 15504603 15504484 ID=Msa0537300-mRNA-1:cds;Parent=Msa0537300-mRNA-1
chr4_1 CDS 15504817 15504880 15504817 ID=Msa0537300-mRNA-1:cds;Parent=Msa0537300-mRNA-1
chr4_1 CDS 15505259 15505350 15505259 ID=Msa0537300-mRNA-1:cds;Parent=Msa0537300-mRNA-1
chr4_1 CDS 15505398 15505410 15505398 ID=Msa0537300-mRNA-1:cds;Parent=Msa0537300-mRNA-1
chr4_1 CDS 15506187 15506414 15506187 ID=Msa0537300-mRNA-1:cds;Parent=Msa0537300-mRNA-1
chr4_1 CDS 15507474 15507562 15507474 ID=Msa0537300-mRNA-1:cds;Parent=Msa0537300-mRNA-1
chr4_1 CDS 15507751 15507973 15507751 ID=Msa0537300-mRNA-1:cds;Parent=Msa0537300-mRNA-1
chr4_1 three_prime_UTR 15507974 15508149 15507974 ID=Msa0537300-mRNA-1:three_prime_utr;Parent=Msa0537300-mRNA-1
Gene Sequence

>Msa0537300

CGGAGAAGAAGTTGCCGGCGGTGGGAGGGAGTACCTGAGAAGAAGTCGCCGGCGGTGGGAGGGAGTACCGGAGAAGAATTCTCCGGCGGTGGGATTGGATTGAAGATGATCGGAAAAGTCCTCGCTGTCTCCGCCGTTGAACACACGGATCTTCATGGGAGGTATTTTTGGGATTATGTAGAAAGGAAACAACTTAAATGGTTTGTGTCAAGTGAATGGTCTCCAGATGGGTGCTATTTGATGACAGCAAACACAACTCCAAGGCTTCAAGATTTTGGGATTAAATATAACATGGAAAATAGTGGACCTGCACCAGAGGGAATTACCAACAAAATATATGAATACACAACAACAATCAAGGAGTATTTGACTGCTTCAGATCTTCCAAATAACTTTGTTCCTGCAACAAGGGTGGAAAACATGCTCAGAAGCCTGCAGAACCTGAAAATTAACTCATATGAGTTAGATTCAACTTTTCCATTGAATTTCGGAAACCATTTCGACTTTCACAGAGCCTTTACATGTCTGCATGAGTTTCAGATTATCCGCATTGTCATCGTCTTCAGGAAAACACAAAGAGGTTCAAGAAGAACATCACACGCAACAGAACCTCAGTTGATATTCTACACGAAAGTATCAGATTCTATTTATAATTCTGCTGAGCTTTTGCAAAGAAGAACATCCTCTGATGCAGAGAGGGCATTGGAACATATTAATGAGGCAAGCTCTTTAATGGAATTTTGGATGATGCCATTTGGTTTCTCTACACGAGAGAAGAAGTGGTGTGAATTTGCAGAACCTGTTGACGGGGAATCAACTGAATTTTTGCGAATCTTTGCACTGAAGTATAACATGGTGATTATAAGCCCATTTCTTGAGAGGGATATGAACCACGGAGAGGTTATTTTGAACACTGCCGTTGTGATTGGGAATCACAGCAATATAATTGGGATACACAGGAAGTCACCTATTCAGCCTCTACGCTTGCTGGTTCCTCCAAACTATCCTAATTCTTCTCCCATATTCATAGACAAGTTTCCAGTTGAATCCCGTAAGGGGAATGAGGATCTTTCAGAGAAAGCAAAAGTGAAGCTTAGCATGTCCTTATGTAATTTCTCACAACCTATGTCCCTTAAGGATATAGCAAAGACTTGTGATCCTACTGCTCGCGGTGTTATTTCCGAGTATGCACAACAATTTGGTGGAGGAACATTCAGCTCTAAGTATGGAGAATGGCAGGAGTTCACATCTTGGGAAGATTTGTTAGCTGCATAA

Protein sequence

>Msa0537300

RRRSCRRWEGVPEKKSPAVGGSTGEEFSGGGIGLKMIGKVLAVSAVEHTDLHGRYFWDYVERKQLKWFVSSEWSPDGCYLMTANTTPRLQDFGIKYNMENSGPAPEGITNKIYEYTTTIKEYLTASDLPNNFVPATRVENMLRSLQNLKINSYELDSTFPLNFGNHFDFHRAFTCLHEFQIIRIVIVFRKTQRGSRRTSHATEPQLIFYTKVSDSIYNSAELLQRRTSSDAERALEHINEASSLMEFWMMPFGFSTREKKWCEFAEPVDGESTEFLRIFALKYNMVIISPFLERDMNHGEVILNTAVVIGNHSNIIGIHRKSPIQPLRLLVPPNYPNSSPIFIDKFPVESRKGNEDLSEKAKVKLSMSLCNFSQPMSLKDIAKTCDPTARGVISEYAQQFGGGTFSSKYGEWQEFTSWEDLLAA*