Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1048110 | ABN08967.1 | 89.565 | 115 | 9 | 1 | 34 | 148 | 164 | 275 | 1.33e-58 | 193 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1048110 | A2Q5U7 | 89.565 | 115 | 9 | 1 | 34 | 148 | 164 | 275 | 6.35e-59 | 193 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0055730 | Msa1048110 | 0.800058 | 1.722459e-48 | -8.615850e-47 |
| Msa0818010 | Msa1048110 | 0.804009 | 2.652888e-49 | -8.615850e-47 |
| Msa1048110 | Msa1198090 | 0.800101 | 1.688017e-48 | -8.615850e-47 |
| Msa1048110 | Msa1384320 | 0.803724 | 3.041439e-49 | -8.615850e-47 |
| Msa0533430 | Msa1048110 | 0.801907 | 7.214929e-49 | -8.615850e-47 |
| Msa0870620 | Msa1048110 | 0.808027 | 3.789266e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1048110 | MtrunA17_Chr7g0216721 | 89.565 | 115 | 9 | 1 | 34 | 148 | 164 | 275 | 1.22e-62 | 193 |
| Msa1048110 | MtrunA17_Chr7g0216951 | 86.957 | 115 | 13 | 1 | 34 | 148 | 284 | 396 | 1.57e-60 | 191 |
| Msa1048110 | MtrunA17_Chr7g0216661 | 88.696 | 115 | 10 | 1 | 34 | 148 | 405 | 516 | 3.02e-59 | 191 |
| Msa1048110 | MtrunA17_Chr7g0216801 | 78.261 | 115 | 20 | 1 | 34 | 148 | 829 | 938 | 4.27e-55 | 185 |
| Msa1048110 | MtrunA17_Chr7g0216701 | 83.478 | 115 | 16 | 1 | 34 | 148 | 817 | 928 | 4.13e-54 | 182 |
| Msa1048110 | MtrunA17_Chr7g0217371 | 87.826 | 115 | 11 | 1 | 34 | 148 | 821 | 932 | 6.13e-54 | 182 |
| Msa1048110 | MtrunA17_Chr7g0216761 | 81.739 | 115 | 17 | 1 | 34 | 148 | 162 | 272 | 2.95e-52 | 166 |
| Msa1048110 | MtrunA17_Chr7g0216781 | 77.320 | 97 | 20 | 1 | 34 | 130 | 334 | 428 | 5.07e-41 | 141 |
| Msa1048110 | MtrunA17_Chr7g0216641 | 78.351 | 97 | 16 | 1 | 34 | 130 | 812 | 903 | 1.24e-39 | 141 |
| Msa1048110 | MtrunA17_Chr7g0216751 | 78.125 | 96 | 7 | 2 | 34 | 129 | 201 | 282 | 9.37e-38 | 130 |
| Msa1048110 | MtrunA17_Chr7g0215761 | 64.356 | 101 | 26 | 3 | 34 | 128 | 840 | 936 | 1.50e-31 | 118 |
| Msa1048110 | MtrunA17_Chr5g0446871 | 42.391 | 92 | 44 | 2 | 34 | 123 | 925 | 1009 | 1.29e-14 | 69.7 |
| Msa1048110 | MtrunA17_Chr5g0439821 | 41.111 | 90 | 45 | 2 | 34 | 122 | 962 | 1044 | 1.80e-13 | 66.6 |
| Msa1048110 | MtrunA17_Chr3g0087631 | 41.304 | 92 | 45 | 2 | 34 | 123 | 875 | 959 | 4.44e-13 | 65.5 |
| Msa1048110 | MtrunA17_Chr5g0440031 | 41.111 | 90 | 45 | 2 | 34 | 122 | 946 | 1028 | 4.86e-13 | 65.5 |
| Msa1048110 | MtrunA17_Chr5g0440011 | 41.111 | 90 | 45 | 2 | 34 | 122 | 903 | 985 | 5.82e-13 | 65.1 |
| Msa1048110 | MtrunA17_Chr5g0435341 | 42.391 | 92 | 44 | 2 | 34 | 123 | 725 | 809 | 6.64e-13 | 65.1 |
| Msa1048110 | MtrunA17_Chr5g0435331 | 42.391 | 92 | 44 | 2 | 34 | 123 | 914 | 998 | 6.72e-13 | 65.1 |
| Msa1048110 | MtrunA17_Chr6g0478761 | 37.363 | 91 | 51 | 2 | 34 | 123 | 236 | 321 | 9.02e-13 | 64.3 |
| Msa1048110 | MtrunA17_Chr4g0032101 | 42.222 | 90 | 44 | 2 | 34 | 122 | 901 | 983 | 1.01e-12 | 64.3 |
| Msa1048110 | MtrunA17_Chr5g0446091 | 41.176 | 85 | 45 | 1 | 34 | 118 | 179 | 258 | 1.46e-12 | 63.5 |
| Msa1048110 | MtrunA17_Chr4g0014151 | 41.758 | 91 | 48 | 2 | 34 | 123 | 966 | 1052 | 1.72e-12 | 63.9 |
| Msa1048110 | MtrunA17_Chr5g0446861 | 38.889 | 90 | 51 | 1 | 34 | 123 | 355 | 440 | 2.69e-12 | 63.2 |
| Msa1048110 | MtrunA17_Chr5g0446021 | 41.176 | 85 | 45 | 1 | 34 | 118 | 918 | 997 | 3.46e-12 | 62.8 |
| Msa1048110 | MtrunA17_Chr5g0440101 | 40.000 | 90 | 46 | 2 | 34 | 122 | 948 | 1030 | 3.61e-12 | 62.8 |
| Msa1048110 | MtrunA17_Chr5g0439811 | 40.000 | 90 | 46 | 2 | 34 | 122 | 793 | 875 | 4.75e-12 | 62.4 |
| Msa1048110 | MtrunA17_Chr5g0439921 | 38.889 | 90 | 47 | 2 | 34 | 122 | 900 | 982 | 7.25e-12 | 62.0 |
| Msa1048110 | MtrunA17_Chr5g0426051 | 39.560 | 91 | 48 | 2 | 34 | 123 | 492 | 576 | 1.03e-11 | 61.6 |
| Msa1048110 | MtrunA17_Chr2g0293591 | 40.449 | 89 | 49 | 1 | 35 | 123 | 868 | 952 | 1.90e-11 | 60.8 |
| Msa1048110 | MtrunA17_Chr5g0439931 | 38.889 | 90 | 47 | 2 | 34 | 122 | 73 | 155 | 2.51e-11 | 58.2 |
| Msa1048110 | MtrunA17_Chr5g0426041 | 38.889 | 90 | 48 | 2 | 34 | 122 | 860 | 943 | 3.75e-11 | 60.1 |
| Msa1048110 | MtrunA17_Chr5g0440141 | 38.889 | 90 | 47 | 2 | 34 | 122 | 969 | 1051 | 3.79e-11 | 60.1 |
| Msa1048110 | MtrunA17_Chr5g0440161 | 37.778 | 90 | 48 | 2 | 34 | 122 | 942 | 1024 | 9.34e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1048110 | AT2G25440.1 | 39.080 | 87 | 50 | 1 | 32 | 118 | 566 | 649 | 2.97e-11 | 60.5 |
Find 33 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCGTTCTTTGAATTATAC+TGG | 0.270650 | 7_2:-9617347 | Msa1048110:CDS |
| GGAAACAAATATCTCTATCT+TGG | 0.303669 | 7_2:+9617542 | None:intergenic |
| TTCAAAGGTGATTCATTTGA+GGG | 0.393321 | 7_2:-9617471 | Msa1048110:CDS |
| GCTTGTCGCTGGAGTGGCAT+TGG | 0.393520 | 7_2:-9617295 | Msa1048110:CDS |
| ACAGTACTTCTGATTGGATA+TGG | 0.405699 | 7_2:-9617324 | Msa1048110:CDS |
| TGTATTGATCGGTGTGGAAT+TGG | 0.410245 | 7_2:+9618918 | None:intergenic |
| TACTGGACAGTACTTCTGAT+TGG | 0.417745 | 7_2:-9617330 | Msa1048110:CDS |
| TATGGCGGTGGGCTTGTCGC+TGG | 0.428945 | 7_2:-9617306 | Msa1048110:CDS |
| CTTGTCGCTGGAGTGGCATT+GGG | 0.431831 | 7_2:-9617294 | Msa1048110:CDS |
| ATCGGTGTGGAATTGGTCTT+AGG | 0.436341 | 7_2:+9618925 | None:intergenic |
| AATTCCACACCGATCAATAC+AGG | 0.452064 | 7_2:-9618916 | Msa1048110:intron |
| CTTATTAAGCAAAATTATAA+CGG | 0.452733 | 7_2:+9617218 | None:intergenic |
| TCATCATCATCAGAAGTAGA+AGG | 0.458650 | 7_2:+9617393 | None:intergenic |
| GGGAAACACTTACTTTCTGC+AGG | 0.474397 | 7_2:-9617274 | Msa1048110:CDS |
| ATTCAAAGGTGATTCATTTG+AGG | 0.476251 | 7_2:-9617472 | Msa1048110:CDS |
| TTCTGATTGGATATGGCGGT+GGG | 0.482268 | 7_2:-9617317 | Msa1048110:CDS |
| GATTCATTTGAGGGTAATCA+AGG | 0.488242 | 7_2:-9617462 | Msa1048110:CDS |
| CTTCTGATTGGATATGGCGG+TGG | 0.495833 | 7_2:-9617318 | Msa1048110:CDS |
| AGGGTAATCAAGGTCTGTGT+GGG | 0.496303 | 7_2:-9617452 | Msa1048110:CDS |
| GGTGTAAACACAAAAGATGT+AGG | 0.500867 | 7_2:+9618946 | None:intergenic |
| ATATTAAAACCTGTATTGAT+CGG | 0.515816 | 7_2:+9618907 | None:intergenic |
| ACTTTCTGCAGGTATTTGCA+TGG | 0.530838 | 7_2:-9617263 | Msa1048110:CDS |
| TGTTAGCTTTCTAATGCCCA+TGG | 0.533994 | 7_2:+9618975 | None:intergenic |
| AAACACAAAAGATGTAGGTA+TGG | 0.535227 | 7_2:+9618951 | None:intergenic |
| CGGTGGGCTTGTCGCTGGAG+TGG | 0.552688 | 7_2:-9617301 | Msa1048110:CDS |
| AGAAGTGTATAGATCATGTC+GGG | 0.558253 | 7_2:-9617416 | Msa1048110:CDS |
| AAATTATAACGGAAACGCTA+AGG | 0.593232 | 7_2:+9617229 | None:intergenic |
| GATGATGATGACGACGACTC+AGG | 0.617404 | 7_2:-9617372 | Msa1048110:CDS |
| AAGAAGTGTATAGATCATGT+CGG | 0.644844 | 7_2:-9617417 | Msa1048110:CDS |
| GAGGGTAATCAAGGTCTGTG+TGG | 0.644965 | 7_2:-9617453 | Msa1048110:CDS |
| AAAACCTGTATTGATCGGTG+TGG | 0.675713 | 7_2:+9618912 | None:intergenic |
| GTACTTCTGATTGGATATGG+CGG | 0.692465 | 7_2:-9617321 | Msa1048110:CDS |
| GGGTAATCAAGGTCTGTGTG+GGG | 0.710658 | 7_2:-9617451 | Msa1048110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAATAATTAAATAAAA+AGG | - | chr7_2:9618391-9618410 | Msa1048110:intron | 0.0% |
| !!! | TTTAAAATAATTAAATAAAA+AGG | - | chr7_2:9618391-9618410 | Msa1048110:intron | 0.0% |
| !! | ATATTATTTATTAGAATATG+AGG | + | chr7_2:9617796-9617815 | None:intergenic | 10.0% |
| !!! | TAAAATAAATATTAAGTTGT+GGG | + | chr7_2:9618147-9618166 | None:intergenic | 10.0% |
| !!! | ATAAAATAAATATTAAGTTG+TGG | + | chr7_2:9618148-9618167 | None:intergenic | 10.0% |
| !! | AAAATAATTAAATAAAAAGG+AGG | - | chr7_2:9618394-9618413 | Msa1048110:intron | 10.0% |
| !! | AAATAATTAAATAAAAAGGA+GGG | - | chr7_2:9618395-9618414 | Msa1048110:intron | 10.0% |
| !! | AAAAAAATCAAAATAAATTG+TGG | + | chr7_2:9618568-9618587 | None:intergenic | 10.0% |
| !! | ATATTATTTATTAGAATATG+AGG | + | chr7_2:9617796-9617815 | None:intergenic | 10.0% |
| !!! | TAAAATAAATATTAAGTTGT+GGG | + | chr7_2:9618147-9618166 | None:intergenic | 10.0% |
| !!! | ATAAAATAAATATTAAGTTG+TGG | + | chr7_2:9618148-9618167 | None:intergenic | 10.0% |
| !! | AAAATAATTAAATAAAAAGG+AGG | - | chr7_2:9618394-9618413 | Msa1048110:intron | 10.0% |
| !! | AAATAATTAAATAAAAAGGA+GGG | - | chr7_2:9618395-9618414 | Msa1048110:intron | 10.0% |
| !! | AAAAAAATCAAAATAAATTG+TGG | + | chr7_2:9618568-9618587 | None:intergenic | 10.0% |
| !! | GTGTATTATTATATATTTAG+TGG | + | chr7_2:9617840-9617859 | None:intergenic | 15.0% |
| !!! | ATATGCTATTATTTGTTATA+TGG | + | chr7_2:9617862-9617881 | None:intergenic | 15.0% |
| !!! | AATATATTTGTTATTTTGTG+TGG | + | chr7_2:9617987-9618006 | None:intergenic | 15.0% |
| !! | GTAGAAATATATATGTTATT+TGG | + | chr7_2:9618016-9618035 | None:intergenic | 15.0% |
| !!! | AAAATAAATATTAAGTTGTG+GGG | + | chr7_2:9618146-9618165 | None:intergenic | 15.0% |
| !! | CTTATTAAGCAAAATTATAA+CGG | + | chr7_2:9618958-9618977 | None:intergenic | 15.0% |
| !! | GTGTATTATTATATATTTAG+TGG | + | chr7_2:9617840-9617859 | None:intergenic | 15.0% |
| !!! | ATATGCTATTATTTGTTATA+TGG | + | chr7_2:9617862-9617881 | None:intergenic | 15.0% |
| !!! | AATATATTTGTTATTTTGTG+TGG | + | chr7_2:9617987-9618006 | None:intergenic | 15.0% |
| !! | GTAGAAATATATATGTTATT+TGG | + | chr7_2:9618016-9618035 | None:intergenic | 15.0% |
| !!! | AAAATAAATATTAAGTTGTG+GGG | + | chr7_2:9618146-9618165 | None:intergenic | 15.0% |
| !! | CTTATTAAGCAAAATTATAA+CGG | + | chr7_2:9618958-9618977 | None:intergenic | 15.0% |
| !!! | ATATTAAAACCTGTATTGAT+CGG | + | chr7_2:9617269-9617288 | None:intergenic | 20.0% |
| !!! | CAGGTTTTAATATCAAAATT+CGG | - | chr7_2:9617276-9617295 | Msa1048110:CDS | 20.0% |
| !!! | AGGTTTTAATATCAAAATTC+GGG | - | chr7_2:9617277-9617296 | Msa1048110:CDS | 20.0% |
| !! | ATAATCCATATGATGATTAT+TGG | + | chr7_2:9617363-9617382 | None:intergenic | 20.0% |
| !!! | TTGTGAGAATTTGATAATTA+GGG | + | chr7_2:9617459-9617478 | None:intergenic | 20.0% |
| !!! | TTTGTGAGAATTTGATAATT+AGG | + | chr7_2:9617460-9617479 | None:intergenic | 20.0% |
| !! | TATTATAAATAGAGAAGCTT+AGG | + | chr7_2:9617688-9617707 | None:intergenic | 20.0% |
| !!! | GAAGAGTTATATTTGTTATT+TGG | + | chr7_2:9617920-9617939 | None:intergenic | 20.0% |
| !! | ATCTTATTATCTACCATTAT+AGG | + | chr7_2:9618456-9618475 | None:intergenic | 20.0% |
| !!! | ATTTTTTTAGTCATACATGA+TGG | - | chr7_2:9618580-9618599 | Msa1048110:intron | 20.0% |
| !! | GTGAAAATATAACTTACTAT+AGG | - | chr7_2:9618606-9618625 | Msa1048110:intron | 20.0% |
| !!! | ATATTAAAACCTGTATTGAT+CGG | + | chr7_2:9617269-9617288 | None:intergenic | 20.0% |
| !!! | CAGGTTTTAATATCAAAATT+CGG | - | chr7_2:9617276-9617295 | Msa1048110:CDS | 20.0% |
| !!! | AGGTTTTAATATCAAAATTC+GGG | - | chr7_2:9617277-9617296 | Msa1048110:CDS | 20.0% |
| !! | ATAATCCATATGATGATTAT+TGG | + | chr7_2:9617363-9617382 | None:intergenic | 20.0% |
| !!! | TTGTGAGAATTTGATAATTA+GGG | + | chr7_2:9617459-9617478 | None:intergenic | 20.0% |
| !!! | TTTGTGAGAATTTGATAATT+AGG | + | chr7_2:9617460-9617479 | None:intergenic | 20.0% |
| !! | TATTATAAATAGAGAAGCTT+AGG | + | chr7_2:9617688-9617707 | None:intergenic | 20.0% |
| !!! | GAAGAGTTATATTTGTTATT+TGG | + | chr7_2:9617920-9617939 | None:intergenic | 20.0% |
| !! | ATCTTATTATCTACCATTAT+AGG | + | chr7_2:9618456-9618475 | None:intergenic | 20.0% |
| !!! | ATTTTTTTAGTCATACATGA+TGG | - | chr7_2:9618580-9618599 | Msa1048110:intron | 20.0% |
| !! | GTGAAAATATAACTTACTAT+AGG | - | chr7_2:9618606-9618625 | Msa1048110:intron | 20.0% |
| ! | TACTTCCAATAATCATCATA+TGG | - | chr7_2:9617355-9617374 | Msa1048110:CDS | 25.0% |
| !! | ATCATCATATGGATTATCTA+AGG | - | chr7_2:9617366-9617385 | Msa1048110:CDS | 25.0% |
| ! | TAGATTACATCTAACAAGTT+GGG | + | chr7_2:9617488-9617507 | None:intergenic | 25.0% |
| ! | TTAGATTACATCTAACAAGT+TGG | + | chr7_2:9617489-9617508 | None:intergenic | 25.0% |
| ! | TATTCTTCCCAAATCTATTT+AGG | - | chr7_2:9617714-9617733 | Msa1048110:intron | 25.0% |
| ! | AGAAAGAAGAATAAGTTGTT+GGG | + | chr7_2:9617740-9617759 | None:intergenic | 25.0% |
| ! | TAGAAAGAAGAATAAGTTGT+TGG | + | chr7_2:9617741-9617760 | None:intergenic | 25.0% |
| ! | TTATTAGTGTGAGTGAATTT+GGG | + | chr7_2:9617772-9617791 | None:intergenic | 25.0% |
| ! | ATTATTAGTGTGAGTGAATT+TGG | + | chr7_2:9617773-9617792 | None:intergenic | 25.0% |
| !!! | AACTGATTATTTTGTGGTAT+AGG | + | chr7_2:9618675-9618694 | None:intergenic | 25.0% |
| !!! | GTAGAAAACTGATTATTTTG+TGG | + | chr7_2:9618681-9618700 | None:intergenic | 25.0% |
| !! | AATCAGTTTTCTACATTCAA+AGG | - | chr7_2:9618687-9618706 | Msa1048110:intron | 25.0% |
| ! | TACTTCCAATAATCATCATA+TGG | - | chr7_2:9617355-9617374 | Msa1048110:CDS | 25.0% |
| !! | ATCATCATATGGATTATCTA+AGG | - | chr7_2:9617366-9617385 | Msa1048110:CDS | 25.0% |
| ! | TAGATTACATCTAACAAGTT+GGG | + | chr7_2:9617488-9617507 | None:intergenic | 25.0% |
| ! | TTAGATTACATCTAACAAGT+TGG | + | chr7_2:9617489-9617508 | None:intergenic | 25.0% |
| ! | TATTCTTCCCAAATCTATTT+AGG | - | chr7_2:9617714-9617733 | Msa1048110:intron | 25.0% |
| ! | AGAAAGAAGAATAAGTTGTT+GGG | + | chr7_2:9617740-9617759 | None:intergenic | 25.0% |
| ! | TAGAAAGAAGAATAAGTTGT+TGG | + | chr7_2:9617741-9617760 | None:intergenic | 25.0% |
| ! | TTATTAGTGTGAGTGAATTT+GGG | + | chr7_2:9617772-9617791 | None:intergenic | 25.0% |
| ! | ATTATTAGTGTGAGTGAATT+TGG | + | chr7_2:9617773-9617792 | None:intergenic | 25.0% |
| !!! | AACTGATTATTTTGTGGTAT+AGG | + | chr7_2:9618675-9618694 | None:intergenic | 25.0% |
| !!! | GTAGAAAACTGATTATTTTG+TGG | + | chr7_2:9618681-9618700 | None:intergenic | 25.0% |
| !! | AATCAGTTTTCTACATTCAA+AGG | - | chr7_2:9618687-9618706 | Msa1048110:intron | 25.0% |
| AAACACAAAAGATGTAGGTA+TGG | + | chr7_2:9617225-9617244 | None:intergenic | 30.0% | |
| !! | GATTATTGGAAGTAGTTTTG+AGG | + | chr7_2:9617349-9617368 | None:intergenic | 30.0% |
| AGATTACATCTAACAAGTTG+GGG | + | chr7_2:9617487-9617506 | None:intergenic | 30.0% | |
| CTGATTCAGGAATTAATCTA+AGG | + | chr7_2:9617555-9617574 | None:intergenic | 30.0% | |
| TATTAGTGTGAGTGAATTTG+GGG | + | chr7_2:9617771-9617790 | None:intergenic | 30.0% | |
| TTCTTCTTGTGTACCTATAA+TGG | - | chr7_2:9618440-9618459 | Msa1048110:intron | 30.0% | |
| GGAAACAAATATCTCTATCT+TGG | + | chr7_2:9618634-9618653 | None:intergenic | 30.0% | |
| TGTTTCCAAAAACAATCTCA+CGG | - | chr7_2:9618647-9618666 | Msa1048110:intron | 30.0% | |
| ATTCAAAGGTGATTCATTTG+AGG | - | chr7_2:9618701-9618720 | Msa1048110:intron | 30.0% | |
| TTCAAAGGTGATTCATTTGA+GGG | - | chr7_2:9618702-9618721 | Msa1048110:intron | 30.0% | |
| ! | AAGAAGTGTATAGATCATGT+CGG | - | chr7_2:9618756-9618775 | Msa1048110:intron | 30.0% |
| CATCGTTCTTTGAATTATAC+TGG | - | chr7_2:9618826-9618845 | Msa1048110:intron | 30.0% | |
| ! | AAATTATAACGGAAACGCTA+AGG | + | chr7_2:9618947-9618966 | None:intergenic | 30.0% |
| AAACACAAAAGATGTAGGTA+TGG | + | chr7_2:9617225-9617244 | None:intergenic | 30.0% | |
| !! | GATTATTGGAAGTAGTTTTG+AGG | + | chr7_2:9617349-9617368 | None:intergenic | 30.0% |
| AGATTACATCTAACAAGTTG+GGG | + | chr7_2:9617487-9617506 | None:intergenic | 30.0% | |
| CTGATTCAGGAATTAATCTA+AGG | + | chr7_2:9617555-9617574 | None:intergenic | 30.0% | |
| TATTAGTGTGAGTGAATTTG+GGG | + | chr7_2:9617771-9617790 | None:intergenic | 30.0% | |
| TTCTTCTTGTGTACCTATAA+TGG | - | chr7_2:9618440-9618459 | Msa1048110:intron | 30.0% | |
| GGAAACAAATATCTCTATCT+TGG | + | chr7_2:9618634-9618653 | None:intergenic | 30.0% | |
| TGTTTCCAAAAACAATCTCA+CGG | - | chr7_2:9618647-9618666 | Msa1048110:intron | 30.0% | |
| ATTCAAAGGTGATTCATTTG+AGG | - | chr7_2:9618701-9618720 | Msa1048110:intron | 30.0% | |
| TTCAAAGGTGATTCATTTGA+GGG | - | chr7_2:9618702-9618721 | Msa1048110:intron | 30.0% | |
| ! | AAGAAGTGTATAGATCATGT+CGG | - | chr7_2:9618756-9618775 | Msa1048110:intron | 30.0% |
| CATCGTTCTTTGAATTATAC+TGG | - | chr7_2:9618826-9618845 | Msa1048110:intron | 30.0% | |
| ! | AAATTATAACGGAAACGCTA+AGG | + | chr7_2:9618947-9618966 | None:intergenic | 30.0% |
| GGTGTAAACACAAAAGATGT+AGG | + | chr7_2:9617230-9617249 | None:intergenic | 35.0% | |
| ! | CAGGAATTAATCTAAGGTGA+GGG | + | chr7_2:9617549-9617568 | None:intergenic | 35.0% |
| ! | TCAGGAATTAATCTAAGGTG+AGG | + | chr7_2:9617550-9617569 | None:intergenic | 35.0% |
| AAGAAAAAAGTCAAGAGAGG+AGG | + | chr7_2:9617608-9617627 | None:intergenic | 35.0% | |
| GAGAAGAAAAAAGTCAAGAG+AGG | + | chr7_2:9617611-9617630 | None:intergenic | 35.0% | |
| ! | TTCTCCTCTTTTCCAAAAAG+CGG | - | chr7_2:9617641-9617660 | Msa1048110:intron | 35.0% |
| !!! | TAAACCGCTTTTTGGAAAAG+AGG | + | chr7_2:9617648-9617667 | None:intergenic | 35.0% |
| ! | CTTTTCCAAAAAGCGGTTTA+AGG | - | chr7_2:9617648-9617667 | Msa1048110:intron | 35.0% |
| !! | GTTTACCTTAAACCGCTTTT+TGG | + | chr7_2:9617656-9617675 | None:intergenic | 35.0% |
| TGTTGGGCCTAAATAGATTT+GGG | + | chr7_2:9617724-9617743 | None:intergenic | 35.0% | |
| TTGTTGGGCCTAAATAGATT+TGG | + | chr7_2:9617725-9617744 | None:intergenic | 35.0% | |
| ATTAGTGTGAGTGAATTTGG+GGG | + | chr7_2:9617770-9617789 | None:intergenic | 35.0% | |
| GTTTCCAAAAACAATCTCAC+GGG | - | chr7_2:9618648-9618667 | Msa1048110:intron | 35.0% | |
| GATTCATTTGAGGGTAATCA+AGG | - | chr7_2:9618711-9618730 | Msa1048110:intron | 35.0% | |
| ! | AGAAGTGTATAGATCATGTC+GGG | - | chr7_2:9618757-9618776 | Msa1048110:intron | 35.0% |
| TCATCATCATCAGAAGTAGA+AGG | + | chr7_2:9618783-9618802 | None:intergenic | 35.0% | |
| ACAGTACTTCTGATTGGATA+TGG | - | chr7_2:9618849-9618868 | Msa1048110:intron | 35.0% | |
| GGTGTAAACACAAAAGATGT+AGG | + | chr7_2:9617230-9617249 | None:intergenic | 35.0% | |
| ! | CAGGAATTAATCTAAGGTGA+GGG | + | chr7_2:9617549-9617568 | None:intergenic | 35.0% |
| ! | TCAGGAATTAATCTAAGGTG+AGG | + | chr7_2:9617550-9617569 | None:intergenic | 35.0% |
| AAGAAAAAAGTCAAGAGAGG+AGG | + | chr7_2:9617608-9617627 | None:intergenic | 35.0% | |
| GAGAAGAAAAAAGTCAAGAG+AGG | + | chr7_2:9617611-9617630 | None:intergenic | 35.0% | |
| ! | TTCTCCTCTTTTCCAAAAAG+CGG | - | chr7_2:9617641-9617660 | Msa1048110:intron | 35.0% |
| !!! | TAAACCGCTTTTTGGAAAAG+AGG | + | chr7_2:9617648-9617667 | None:intergenic | 35.0% |
| ! | CTTTTCCAAAAAGCGGTTTA+AGG | - | chr7_2:9617648-9617667 | Msa1048110:intron | 35.0% |
| !! | GTTTACCTTAAACCGCTTTT+TGG | + | chr7_2:9617656-9617675 | None:intergenic | 35.0% |
| TGTTGGGCCTAAATAGATTT+GGG | + | chr7_2:9617724-9617743 | None:intergenic | 35.0% | |
| TTGTTGGGCCTAAATAGATT+TGG | + | chr7_2:9617725-9617744 | None:intergenic | 35.0% | |
| ATTAGTGTGAGTGAATTTGG+GGG | + | chr7_2:9617770-9617789 | None:intergenic | 35.0% | |
| GTTTCCAAAAACAATCTCAC+GGG | - | chr7_2:9618648-9618667 | Msa1048110:intron | 35.0% | |
| GATTCATTTGAGGGTAATCA+AGG | - | chr7_2:9618711-9618730 | Msa1048110:intron | 35.0% | |
| ! | AGAAGTGTATAGATCATGTC+GGG | - | chr7_2:9618757-9618776 | Msa1048110:intron | 35.0% |
| TCATCATCATCAGAAGTAGA+AGG | + | chr7_2:9618783-9618802 | None:intergenic | 35.0% | |
| ACAGTACTTCTGATTGGATA+TGG | - | chr7_2:9618849-9618868 | Msa1048110:intron | 35.0% | |
| ! | TGTATTGATCGGTGTGGAAT+TGG | + | chr7_2:9617258-9617277 | None:intergenic | 40.0% |
| AATTCCACACCGATCAATAC+AGG | - | chr7_2:9617257-9617276 | Msa1048110:CDS | 40.0% | |
| ! | AAAACCTGTATTGATCGGTG+TGG | + | chr7_2:9617264-9617283 | None:intergenic | 40.0% |
| CCATGAGATTAGGTGAAACT+TGG | + | chr7_2:9617320-9617339 | None:intergenic | 40.0% | |
| CCAAGTTTCACCTAATCTCA+TGG | - | chr7_2:9617317-9617336 | Msa1048110:CDS | 40.0% | |
| GAGGTTAGAACCATGAGATT+AGG | + | chr7_2:9617330-9617349 | None:intergenic | 40.0% | |
| AGCAGCGTTCTTCTTTCATA+AGG | - | chr7_2:9617576-9617595 | Msa1048110:intron | 40.0% | |
| TACTGGACAGTACTTCTGAT+TGG | - | chr7_2:9618843-9618862 | Msa1048110:intron | 40.0% | |
| GTACTTCTGATTGGATATGG+CGG | - | chr7_2:9618852-9618871 | Msa1048110:intron | 40.0% | |
| ACTTTCTGCAGGTATTTGCA+TGG | - | chr7_2:9618910-9618929 | Msa1048110:intron | 40.0% | |
| ! | TGTATTGATCGGTGTGGAAT+TGG | + | chr7_2:9617258-9617277 | None:intergenic | 40.0% |
| AATTCCACACCGATCAATAC+AGG | - | chr7_2:9617257-9617276 | Msa1048110:CDS | 40.0% | |
| ! | AAAACCTGTATTGATCGGTG+TGG | + | chr7_2:9617264-9617283 | None:intergenic | 40.0% |
| CCATGAGATTAGGTGAAACT+TGG | + | chr7_2:9617320-9617339 | None:intergenic | 40.0% | |
| CCAAGTTTCACCTAATCTCA+TGG | - | chr7_2:9617317-9617336 | Msa1048110:CDS | 40.0% | |
| GAGGTTAGAACCATGAGATT+AGG | + | chr7_2:9617330-9617349 | None:intergenic | 40.0% | |
| AGCAGCGTTCTTCTTTCATA+AGG | - | chr7_2:9617576-9617595 | Msa1048110:intron | 40.0% | |
| TACTGGACAGTACTTCTGAT+TGG | - | chr7_2:9618843-9618862 | Msa1048110:intron | 40.0% | |
| GTACTTCTGATTGGATATGG+CGG | - | chr7_2:9618852-9618871 | Msa1048110:intron | 40.0% | |
| ACTTTCTGCAGGTATTTGCA+TGG | - | chr7_2:9618910-9618929 | Msa1048110:intron | 40.0% | |
| !! | ATCGGTGTGGAATTGGTCTT+AGG | + | chr7_2:9617251-9617270 | None:intergenic | 45.0% |
| ! | AGGACCCGTGAGATTGTTTT+TGG | + | chr7_2:9618655-9618674 | None:intergenic | 45.0% |
| AGGGTAATCAAGGTCTGTGT+GGG | - | chr7_2:9618721-9618740 | Msa1048110:intron | 45.0% | |
| TTCTGATTGGATATGGCGGT+GGG | - | chr7_2:9618856-9618875 | Msa1048110:intron | 45.0% | |
| GGGAAACACTTACTTTCTGC+AGG | - | chr7_2:9618899-9618918 | Msa1048110:intron | 45.0% | |
| !! | ATCGGTGTGGAATTGGTCTT+AGG | + | chr7_2:9617251-9617270 | None:intergenic | 45.0% |
| ! | AGGACCCGTGAGATTGTTTT+TGG | + | chr7_2:9618655-9618674 | None:intergenic | 45.0% |
| AGGGTAATCAAGGTCTGTGT+GGG | - | chr7_2:9618721-9618740 | Msa1048110:intron | 45.0% | |
| TTCTGATTGGATATGGCGGT+GGG | - | chr7_2:9618856-9618875 | Msa1048110:intron | 45.0% | |
| GGGAAACACTTACTTTCTGC+AGG | - | chr7_2:9618899-9618918 | Msa1048110:intron | 45.0% | |
| !! | AGAAATATATATATATTATT+TGG | + | chr7_2:9618064-9618083 | None:intergenic | 5.0% |
| !! | AGAAATATATATATATTATT+TGG | + | chr7_2:9618064-9618083 | None:intergenic | 5.0% |
| !! | AAGAACGCTGCTGCTGATTC+AGG | + | chr7_2:9617568-9617587 | None:intergenic | 50.0% |
| GAGGGTAATCAAGGTCTGTG+TGG | - | chr7_2:9618720-9618739 | Msa1048110:intron | 50.0% | |
| GGGTAATCAAGGTCTGTGTG+GGG | - | chr7_2:9618722-9618741 | Msa1048110:intron | 50.0% | |
| ! | GATGATGATGACGACGACTC+AGG | - | chr7_2:9618801-9618820 | Msa1048110:intron | 50.0% |
| CTTCTGATTGGATATGGCGG+TGG | - | chr7_2:9618855-9618874 | Msa1048110:intron | 50.0% | |
| !! | AAGAACGCTGCTGCTGATTC+AGG | + | chr7_2:9617568-9617587 | None:intergenic | 50.0% |
| GAGGGTAATCAAGGTCTGTG+TGG | - | chr7_2:9618720-9618739 | Msa1048110:intron | 50.0% | |
| GGGTAATCAAGGTCTGTGTG+GGG | - | chr7_2:9618722-9618741 | Msa1048110:intron | 50.0% | |
| ! | GATGATGATGACGACGACTC+AGG | - | chr7_2:9618801-9618820 | Msa1048110:intron | 50.0% |
| CTTCTGATTGGATATGGCGG+TGG | - | chr7_2:9618855-9618874 | Msa1048110:intron | 50.0% | |
| CTTGTCGCTGGAGTGGCATT+GGG | - | chr7_2:9618879-9618898 | Msa1048110:intron | 55.0% | |
| CTTGTCGCTGGAGTGGCATT+GGG | - | chr7_2:9618879-9618898 | Msa1048110:intron | 55.0% | |
| GCTTGTCGCTGGAGTGGCAT+TGG | - | chr7_2:9618878-9618897 | Msa1048110:intron | 60.0% | |
| GCTTGTCGCTGGAGTGGCAT+TGG | - | chr7_2:9618878-9618897 | Msa1048110:intron | 60.0% | |
| ! | TATGGCGGTGGGCTTGTCGC+TGG | - | chr7_2:9618867-9618886 | Msa1048110:intron | 65.0% |
| ! | TATGGCGGTGGGCTTGTCGC+TGG | - | chr7_2:9618867-9618886 | Msa1048110:intron | 65.0% |
| ! | CGGTGGGCTTGTCGCTGGAG+TGG | - | chr7_2:9618872-9618891 | Msa1048110:intron | 70.0% |
| ! | CGGTGGGCTTGTCGCTGGAG+TGG | - | chr7_2:9618872-9618891 | Msa1048110:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 9617200 | 9618995 | 9617200 | ID=Msa1048110;Name=Msa1048110 |
| chr7_2 | mRNA | 9617200 | 9618995 | 9617200 | ID=Msa1048110-mRNA-1;Parent=Msa1048110;Name=Msa1048110-mRNA-1;_AED=0.56;_eAED=0.56;_QI=0|0|0|0.5|1|1|2|0|148 |
| chr7_2 | exon | 9618917 | 9618995 | 9618917 | ID=Msa1048110-mRNA-1:exon:2522;Parent=Msa1048110-mRNA-1 |
| chr7_2 | exon | 9617200 | 9617567 | 9617200 | ID=Msa1048110-mRNA-1:exon:2521;Parent=Msa1048110-mRNA-1 |
| chr7_2 | CDS | 9618917 | 9618995 | 9618917 | ID=Msa1048110-mRNA-1:cds;Parent=Msa1048110-mRNA-1 |
| chr7_2 | CDS | 9617200 | 9617567 | 9617200 | ID=Msa1048110-mRNA-1:cds;Parent=Msa1048110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
