AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0870620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0870620 MtrunA17_Chr6g0452181 89.286 196 16 2 89 281 93 286 2.49e-120 354
Msa0870620 MtrunA17_Chr6g0452181 95.294 85 4 0 267 351 363 447 3.29e-49 171
Msa0870620 MtrunA17_Chr1g0165011 40.642 187 95 4 91 266 102 283 2.41e-34 131
Msa0870620 MtrunA17_Chr8g0355021 46.154 143 69 3 136 274 204 342 1.00e-33 130
Msa0870620 MtrunA17_Chr7g0263111 40.541 185 76 5 91 274 126 277 2.29e-32 125
Msa0870620 MtrunA17_Chr1g0185281 49.219 128 57 3 151 274 280 403 4.79e-32 126
Msa0870620 MtrunA17_Chr8g0375751 39.665 179 85 4 89 266 96 252 6.13e-32 124
Msa0870620 MtrunA17_Chr8g0375751 58.696 46 19 0 267 312 341 386 2.47e-11 64.7
Msa0870620 MtrunA17_Chr1g0205121 45.270 148 67 5 132 274 292 430 8.12e-31 122
Msa0870620 MtrunA17_Chr6g0479511 33.690 187 119 3 89 274 82 264 9.55e-31 120
Msa0870620 MtrunA17_Chr6g0479511 55.814 43 19 0 267 309 346 388 7.93e-11 62.8
Msa0870620 MtrunA17_Chr5g0394901 33.891 239 140 7 45 274 240 469 1.48e-30 122
Msa0870620 MtrunA17_Chr7g0260081 48.438 128 58 3 151 274 280 403 2.81e-30 121
Msa0870620 MtrunA17_Chr8g0382571 47.244 127 59 3 152 274 206 328 3.97e-30 120
Msa0870620 MtrunA17_Chr8g0382571 65.854 41 14 0 267 307 409 449 1.36e-11 65.5
Msa0870620 MtrunA17_Chr6g0466801 49.167 120 56 4 156 274 366 481 1.84e-26 110
Msa0870620 MtrunA17_Chr1g0201271 46.667 120 59 4 156 274 368 483 5.88e-26 108
Msa0870620 MtrunA17_Chr5g0400311 41.985 131 69 4 147 274 353 479 2.72e-24 103
Msa0870620 MtrunA17_Chr4g0054951 44.915 118 60 3 158 274 309 422 3.71e-24 103
Msa0870620 MtrunA17_Chr4g0054941 44.068 118 61 3 158 274 309 422 6.97e-24 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0870620 AT2G37440.2 41.951 205 101 6 89 292 53 240 3.29e-40 146
Msa0870620 AT2G37440.2 42.697 89 40 2 267 351 305 386 1.11e-14 75.1
Msa0870620 AT2G37440.1 41.589 214 105 7 89 292 118 321 3.97e-39 145
Msa0870620 AT2G37440.1 42.697 89 40 2 267 351 386 467 1.81e-14 74.7
Msa0870620 AT2G37440.3 41.589 214 105 7 89 292 118 321 3.97e-39 145
Msa0870620 AT2G37440.3 42.697 89 40 2 267 351 386 467 1.81e-14 74.7
Msa0870620 AT5G65090.2 51.667 120 50 3 159 274 199 314 4.16e-33 128
Msa0870620 AT5G65090.2 63.636 44 16 0 267 310 395 438 1.26e-12 68.9
Msa0870620 AT5G65090.3 51.667 120 50 3 159 274 262 377 6.61e-33 128
Msa0870620 AT5G65090.3 63.636 44 16 0 267 310 458 501 1.33e-12 68.9
Msa0870620 AT5G65090.1 51.667 120 50 3 159 274 262 377 6.61e-33 128
Msa0870620 AT5G65090.1 63.636 44 16 0 267 310 458 501 1.33e-12 68.9
Msa0870620 AT3G63240.2 49.206 126 60 2 151 274 270 393 9.33e-32 125
Msa0870620 AT3G63240.2 68.421 38 12 0 267 304 474 511 7.93e-11 63.5
Msa0870620 AT3G63240.1 49.206 126 60 2 151 274 270 393 9.33e-32 125
Msa0870620 AT3G63240.1 68.421 38 12 0 267 304 474 511 7.93e-11 63.5
Msa0870620 AT5G04980.4 46.667 135 64 3 158 288 156 286 3.35e-31 122
Msa0870620 AT5G04980.2 46.667 135 64 3 158 288 220 350 5.52e-31 122
Msa0870620 AT5G04980.1 46.667 135 64 3 158 288 191 321 6.87e-31 122
Msa0870620 AT5G04980.3 46.667 135 64 3 158 288 191 321 6.87e-31 122
Msa0870620 AT1G05470.2 49.194 124 55 3 155 274 345 464 8.51e-31 123
Msa0870620 AT1G05470.1 49.194 124 55 3 155 274 345 464 8.51e-31 123
Msa0870620 AT2G32010.2 49.194 124 55 3 155 274 322 441 8.78e-31 123
Msa0870620 AT2G32010.1 49.194 124 55 3 155 274 322 441 8.78e-31 123
Msa0870620 AT2G32010.4 49.194 124 55 3 155 274 322 441 8.78e-31 123
Msa0870620 AT2G32010.3 49.194 124 55 3 155 274 322 441 8.78e-31 123
Msa0870620 AT2G01900.1 38.503 187 98 6 89 274 94 264 9.86e-31 121
Msa0870620 AT2G01900.2 38.503 187 98 6 89 274 94 264 9.93e-31 120
Msa0870620 AT2G01900.3 38.503 187 98 6 89 274 102 272 1.10e-30 121
Msa0870620 AT1G34120.5 43.137 153 75 7 130 274 148 296 1.22e-27 112
Msa0870620 AT1G34120.4 43.137 153 75 7 130 274 299 447 1.52e-27 113
Msa0870620 AT1G34120.1 43.137 153 75 7 130 274 299 447 4.04e-27 112
Msa0870620 AT1G34120.2 43.137 153 75 7 130 274 303 451 4.22e-27 112
Msa0870620 AT1G34120.3 42.484 153 75 7 130 274 303 450 3.24e-26 110
Msa0870620 AT4G18010.2 42.975 121 64 3 155 274 385 501 3.64e-24 103
Msa0870620 AT4G18010.1 42.975 121 64 3 155 274 385 501 4.82e-24 103
Msa0870620 AT1G71710.1 43.802 121 55 4 159 274 408 520 4.59e-23 100
Msa0870620 AT1G71710.2 43.802 121 55 4 159 274 399 511 4.80e-23 100

Find 64 sgRNAs with CRISPR-Local

Find 387 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGGCTTATCAGTCTTTA+AGG 0.103345 6_1:-5173108 Msa0870620:intron
ATTACTGTTGAGGTCTTTAA+AGG 0.196297 6_1:+5173070 None:intergenic
TAAAGACCTCAACAGTAATA+AGG 0.237934 6_1:-5173066 Msa0870620:CDS
GTTGTAGCACATTTAGCTTC+TGG 0.239187 6_1:-5172692 Msa0870620:CDS
TTTGAGTCATCACACCAATT+TGG 0.247139 6_1:-5174098 Msa0870620:CDS
TGTGGTGTTATGGGATATTT+AGG 0.280551 6_1:-5172770 Msa0870620:CDS
TTCAGTTGCATGTGGTGTTA+TGG 0.281058 6_1:-5172780 Msa0870620:CDS
ACAAATTGGAATAATCTTAT+AGG 0.292626 6_1:-5173022 Msa0870620:CDS
TTGTTGGATTTGATTGGTTA+TGG 0.295506 6_1:-5175201 Msa0870620:CDS
ATCCATCAGTGGCAACAAAT+TGG 0.305604 6_1:-5173036 Msa0870620:CDS
AGTTGGTTGTCTAATGTTAA+AGG 0.329620 6_1:-5175085 Msa0870620:intron
TCATGGCCTAAGATTGTTAG+AGG 0.356206 6_1:+5172581 None:intergenic
CATCATCCTCTAACAATCTT+AGG 0.357579 6_1:-5172587 Msa0870620:CDS
ATACACAACACTTACATGAT+TGG 0.363868 6_1:+5169705 None:intergenic
TTGTAGCACATTTAGCTTCT+GGG 0.368059 6_1:-5172691 Msa0870620:CDS
TCAGTTGCATGTGGTGTTAT+GGG 0.377051 6_1:-5172779 Msa0870620:CDS
TATCAAAACATTGGAGATAG+TGG 0.400846 6_1:-5172920 Msa0870620:CDS
TTGGAGTATTCATAAGTGTT+TGG 0.411708 6_1:-5172853 Msa0870620:CDS
AGAAAGGTGATGAAGGTAGA+AGG 0.414224 6_1:-5172664 Msa0870620:CDS
CTCCACGACAGATTCCAAAT+TGG 0.416697 6_1:+5174084 None:intergenic
TTCCAATTTGTTGCCACTGA+TGG 0.433961 6_1:+5173034 None:intergenic
TCGATCATGATCTGGTTTGT+TGG 0.437437 6_1:-5175217 None:intergenic
TGATTGGATTGCAAAATTGT+TGG 0.441238 6_1:+5169721 None:intergenic
AAAGACCTCAACAGTAATAA+GGG 0.442715 6_1:-5173065 Msa0870620:CDS
TCTGGTTTGTTGGATTTGAT+TGG 0.443825 6_1:-5175207 Msa0870620:CDS
TATCTAGTTCGATCATGATC+TGG 0.448380 6_1:-5175225 None:intergenic
TTCAGCCCTTATTACTGTTG+AGG 0.454582 6_1:+5173060 None:intergenic
GCAGGTGTGATAGAATTCTA+TGG 0.456577 6_1:-5169885 Msa0870620:intron
GGCTGCTGACTCAGTTGAGT+TGG 0.457432 6_1:-5175102 Msa0870620:CDS
TTGGTTAAAAGAACAAGTGT+TGG 0.481233 6_1:-5172834 Msa0870620:CDS
TTAGCTTCTGGGGAAAAGAA+AGG 0.481354 6_1:-5172680 Msa0870620:CDS
ATCATCTAGCAAAGAACTTG+TGG 0.509628 6_1:-5169761 Msa0870620:CDS
ATGGGATATTTAGGAAACAA+AGG 0.510358 6_1:-5172761 Msa0870620:CDS
CTTTGTTGCTGCATTCGAGT+TGG 0.511983 6_1:-5175164 Msa0870620:CDS
CAAGAAAATTATCAAAACAT+TGG 0.513877 6_1:-5172929 Msa0870620:CDS
CTTCATTAACATTGAAAGTG+AGG 0.516557 6_1:+5169537 None:intergenic
ATTGGTTATGGCTCATCATG+CGG 0.519068 6_1:-5175189 Msa0870620:CDS
TTGGTTATGGCTCATCATGC+GGG 0.520131 6_1:-5175188 Msa0870620:CDS
TCGGTGGCAACCTGCACGAT+GGG 0.521110 6_1:-5175123 Msa0870620:CDS
AGGCATGCAGCAGAGCCATC+AGG 0.524647 6_1:-5174032 Msa0870620:CDS
AGAATTCTATGGTATGGTAA+AGG 0.528647 6_1:-5169874 Msa0870620:CDS
TGTGATAGAATTCTATGGTA+TGG 0.529314 6_1:-5169880 Msa0870620:CDS
GATAAGGATGAATTTAACAT+AGG 0.529596 6_1:+5172959 None:intergenic
ACAACAAATTTGAGTTCCCA+TGG 0.529948 6_1:-5172988 Msa0870620:CDS
TTAGGAAACAAAGGTTGTGT+GGG 0.539213 6_1:-5172752 Msa0870620:CDS
GGAGTTAGTATGTTGATTGA+AGG 0.544715 6_1:-5172731 Msa0870620:CDS
GAGTCAGCAGCCCATCGTGC+AGG 0.545125 6_1:+5175113 None:intergenic
GCTGCTAGCACCACACCTGA+TGG 0.545874 6_1:+5174017 None:intergenic
TGCAGCAGAGCCATCAGGTG+TGG 0.551717 6_1:-5174027 Msa0870620:CDS
TTTAGGAAACAAAGGTTGTG+TGG 0.554999 6_1:-5172753 Msa0870620:CDS
TTGGATTGCAAAATTGTTGG+AGG 0.563405 6_1:+5169724 None:intergenic
GGGGAAAAGAAAGGTGATGA+AGG 0.566624 6_1:-5172671 Msa0870620:CDS
TCTGTCGTGGAGGGCAGTTG+CGG 0.568661 6_1:-5174073 Msa0870620:CDS
TTAACATAGGTGTTAACCAT+GGG 0.581644 6_1:+5172972 None:intergenic
TGTAGCACATTTAGCTTCTG+GGG 0.589661 6_1:-5172690 Msa0870620:CDS
TGGATTGCAAAATTGTTGGA+GGG 0.599777 6_1:+5169725 None:intergenic
TTTAACATAGGTGTTAACCA+TGG 0.603323 6_1:+5172971 None:intergenic
CACCAATTTGGAATCTGTCG+TGG 0.605807 6_1:-5174086 Msa0870620:CDS
AGAGTTTGTTCAGTTGCATG+TGG 0.609478 6_1:-5172788 Msa0870620:CDS
CAATTTGGAATCTGTCGTGG+AGG 0.612355 6_1:-5174083 Msa0870620:CDS
AATTTGGAATCTGTCGTGGA+GGG 0.623726 6_1:-5174082 Msa0870620:CDS
ATGTTAATGAAGAATGTACA+AGG 0.625047 6_1:-5169526 Msa0870620:CDS
GGCTGCAGTGTGAAACATGT+AGG 0.685491 6_1:-5174052 Msa0870620:CDS
AAGGGCTGAAGATCCATCAG+TGG 0.687728 6_1:-5173047 Msa0870620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAAATAAAAAAAAT+TGG + chr6_1:5171256-5171275 None:intergenic 0.0%
!! TCAAAAATATAAAAAAAATG+AGG - chr6_1:5170225-5170244 Msa0870620:intron 10.0%
!! GAAATAAAATAAATAGAAAT+TGG + chr6_1:5170829-5170848 None:intergenic 10.0%
!! TTATATTAAAATAGCTTAAT+TGG - chr6_1:5172393-5172412 Msa0870620:intron 10.0%
!!! TTGTTATTGTTTTTTTATAA+GGG + chr6_1:5172459-5172478 None:intergenic 10.0%
!!! TTTGTTATTGTTTTTTTATA+AGG + chr6_1:5172460-5172479 None:intergenic 10.0%
!!! ATTTATTATCTATTTTTGAT+TGG - chr6_1:5173816-5173835 Msa0870620:intron 10.0%
!! AAAAAAAATCAAAATCAATT+TGG - chr6_1:5174392-5174411 Msa0870620:intron 10.0%
!!! CATAATTTTAAGAATTAATT+AGG - chr6_1:5174570-5174589 Msa0870620:intron 10.0%
!! TGTGTATAATAAAAAAATAA+AGG - chr6_1:5175041-5175060 Msa0870620:intron 10.0%
!! TCGTTTAAGAATAAAAATTA+AGG - chr6_1:5170081-5170100 Msa0870620:intron 15.0%
!! AAATGAAAGAAAAGAAAAAA+AGG - chr6_1:5170288-5170307 Msa0870620:intron 15.0%
!! CTTATTATACTTAAAAATGT+TGG + chr6_1:5170434-5170453 None:intergenic 15.0%
!!! AATGTTTTTTTTTTTTCTTG+TGG - chr6_1:5171125-5171144 Msa0870620:intron 15.0%
!! TAATAATGCTTAAATGTAAT+AGG - chr6_1:5171369-5171388 Msa0870620:intron 15.0%
!!! AAAAAAATAGACGATTTTAT+TGG + chr6_1:5171559-5171578 None:intergenic 15.0%
!! AGTAAAACAACATTAATATA+AGG + chr6_1:5172190-5172209 None:intergenic 15.0%
!!! CTTGTAAAATCAATATTTTT+AGG - chr6_1:5172865-5172884 Msa0870620:CDS 15.0%
!! ATCAAATTTGTAAAATTGAT+TGG + chr6_1:5172946-5172965 None:intergenic 15.0%
!!! ATGATTTGTGAAATAATTAA+TGG - chr6_1:5173106-5173125 Msa0870620:intron 15.0%
!!! TAATTTTAAGAATCAAAACT+AGG + chr6_1:5173303-5173322 None:intergenic 15.0%
!! AAAAATAAAATTATCCAAAC+AGG - chr6_1:5173377-5173396 Msa0870620:intron 15.0%
!! AAAATAAAATTATCCAAACA+GGG - chr6_1:5173378-5173397 Msa0870620:intron 15.0%
!! TTATTAAGGACAAAAAAAAT+AGG + chr6_1:5173643-5173662 None:intergenic 15.0%
!!! AATTTTTGAGCATATTATTA+AGG + chr6_1:5173657-5173676 None:intergenic 15.0%
!!! GAAATTTGTGATATTTTTTT+CGG - chr6_1:5173687-5173706 Msa0870620:intron 15.0%
!!! CTTTTATCTTTGTTAATTAT+AGG - chr6_1:5174231-5174250 Msa0870620:intron 15.0%
!! AAAATACGAAGATTAAAATA+TGG + chr6_1:5174337-5174356 None:intergenic 15.0%
!!! TATTTTAATCTTCGTATTTT+AGG - chr6_1:5174337-5174356 Msa0870620:intron 15.0%
!!! ATTTTAATCTTCGTATTTTA+GGG - chr6_1:5174338-5174357 Msa0870620:intron 15.0%
!! CTTAAAATTATGATAAATAC+AGG + chr6_1:5174562-5174581 None:intergenic 15.0%
!!! AACTCTACAATTATATTTTA+TGG + chr6_1:5174753-5174772 None:intergenic 15.0%
!!! ATAATTGTAGAGTTTTTTTT+AGG - chr6_1:5174759-5174778 Msa0870620:intron 15.0%
!!! TAATTGTAGAGTTTTTTTTA+GGG - chr6_1:5174760-5174779 Msa0870620:intron 15.0%
!!! TAAAAAGTACAAAAAAGACT+GGG + chr6_1:5170043-5170062 None:intergenic 20.0%
!!! TTAAAAAGTACAAAAAAGAC+TGG + chr6_1:5170044-5170063 None:intergenic 20.0%
!! ATAAAAAAAATGAGGAAAAG+AGG - chr6_1:5170233-5170252 Msa0870620:intron 20.0%
!! ACTAAATTCACAATAAACAA+TGG + chr6_1:5170319-5170338 None:intergenic 20.0%
!! ATTGTTTATTGTGAATTTAG+TGG - chr6_1:5170318-5170337 Msa0870620:intron 20.0%
!! TGAATGAATATCATGAATAT+TGG + chr6_1:5170552-5170571 None:intergenic 20.0%
!! AGAAATTGGAATTAAAAAAG+AGG + chr6_1:5170815-5170834 None:intergenic 20.0%
!! AAGGATAAAAAAGATTAAAC+TGG - chr6_1:5170896-5170915 Msa0870620:intron 20.0%
!! AAAATTATTGAATTAAGGGT+TGG - chr6_1:5171520-5171539 Msa0870620:intron 20.0%
!!! TTATTCTTTTAATTAGAGTG+AGG - chr6_1:5171596-5171615 Msa0870620:intron 20.0%
!! ACAAATTGGAATAATCTTAT+AGG - chr6_1:5171708-5171727 Msa0870620:intron 20.0%
!! CAAGAAAATTATCAAAACAT+TGG - chr6_1:5171801-5171820 Msa0870620:intron 20.0%
!!! ATCAAGTTGAAGAAATTTTT+AGG - chr6_1:5172093-5172112 Msa0870620:intron 20.0%
!! TAAACATGAAAAAACACAAA+GGG + chr6_1:5172223-5172242 None:intergenic 20.0%
!! ATAAACATGAAAAAACACAA+AGG + chr6_1:5172224-5172243 None:intergenic 20.0%
!!! TTTTTCATGTTTATGATGAT+TGG - chr6_1:5172230-5172249 Msa0870620:intron 20.0%
!! CCTAATAAATAAAGTGATAT+GGG + chr6_1:5172559-5172578 None:intergenic 20.0%
!!! TTTCGAAGTGAATTTTTAAT+AGG + chr6_1:5172823-5172842 None:intergenic 20.0%
!!! ATCAATTTTCATGCTAAAAA+AGG - chr6_1:5173266-5173285 Msa0870620:intron 20.0%
!! ATTACTAATAAAGATGTCTA+AGG + chr6_1:5173328-5173347 None:intergenic 20.0%
!!! CTGATATTTGTTAATGTTTT+TGG - chr6_1:5173557-5173576 Msa0870620:intron 20.0%
!!! CGATATTTTTAATATTAGTG+AGG + chr6_1:5173734-5173753 None:intergenic 20.0%
!!! TTCTTGAAGTTTTTTGAAAT+TGG - chr6_1:5175102-5175121 Msa0870620:CDS 20.0%
!!! TTTTTGAAATTGGTATTCTA+AGG - chr6_1:5175112-5175131 Msa0870620:CDS 20.0%
!! ACAACTTTCTTTTGCAATTT+GGG - chr6_1:5169817-5169836 Msa0870620:CDS 25.0%
!! AAAAAGTACAAAAAAGACTG+GGG + chr6_1:5170042-5170061 None:intergenic 25.0%
! ATTTCTCAATTTCTCCAATT+AGG + chr6_1:5170272-5170291 None:intergenic 25.0%
!! AATAAGATTGTCGTTTATTC+AGG - chr6_1:5170448-5170467 Msa0870620:intron 25.0%
!! ATAAGATTGTCGTTTATTCA+GGG - chr6_1:5170449-5170468 Msa0870620:intron 25.0%
! TAAAACTTCACAACTCTATA+CGG + chr6_1:5170741-5170760 None:intergenic 25.0%
! TGTATTATAACGTGAACAAA+CGG + chr6_1:5170767-5170786 None:intergenic 25.0%
! TTAAAAAATCCAAAGTCTAG+AGG - chr6_1:5170851-5170870 Msa0870620:intron 25.0%
!!! TAAAAACTCGATATTTTGGT+CGG + chr6_1:5170936-5170955 None:intergenic 25.0%
!!! CGAGTCGAATTTTAAAATTA+TGG - chr6_1:5171060-5171079 Msa0870620:intron 25.0%
!!! GTTTTTTTTTTTTCTTGTGG+TGG - chr6_1:5171128-5171147 Msa0870620:intron 25.0%
! ACAATTGTATCTATGTTTGA+TGG - chr6_1:5171220-5171239 Msa0870620:intron 25.0%
! TAAAAAAATGTAACCACACT+TGG - chr6_1:5171430-5171449 Msa0870620:intron 25.0%
! TAATTAGAGTGAGGAATAAA+AGG - chr6_1:5171605-5171624 Msa0870620:intron 25.0%
! GATAAGGATGAATTTAACAT+AGG + chr6_1:5171774-5171793 None:intergenic 25.0%
!! ATTTTCTTGATCACTTGATA+AGG + chr6_1:5171790-5171809 None:intergenic 25.0%
! TTTCCTAAGCTAGTAAAATA+TGG + chr6_1:5172334-5172353 None:intergenic 25.0%
!!! GGTCTTCATTTTTAAAATTC+AGG - chr6_1:5172356-5172375 Msa0870620:intron 25.0%
!! CCCATATCACTTTATTTATT+AGG - chr6_1:5172556-5172575 Msa0870620:intron 25.0%
! GCCTAATAAATAAAGTGATA+TGG + chr6_1:5172560-5172579 None:intergenic 25.0%
!! TGTGACTTTCTATTTTCTTA+GGG + chr6_1:5172631-5172650 None:intergenic 25.0%
!! TTTAGGTTATAAAATGTGAG+TGG - chr6_1:5172882-5172901 Msa0870620:CDS 25.0%
! TTAGGTTATAAAATGTGAGT+GGG - chr6_1:5172883-5172902 Msa0870620:CDS 25.0%
!!! TTTCAAGTTTAGTCTTTCTT+AGG - chr6_1:5173028-5173047 Msa0870620:CDS 25.0%
!! CAAATCATATCTAATTTGCA+TGG + chr6_1:5173094-5173113 None:intergenic 25.0%
!! AAATGTGTTACTCAATGTAA+GGG + chr6_1:5173152-5173171 None:intergenic 25.0%
! TTACATTGAGTAACACATTT+CGG - chr6_1:5173152-5173171 Msa0870620:intron 25.0%
!! TATAGCAAGATTCTTTGAAA+AGG - chr6_1:5173504-5173523 Msa0870620:intron 25.0%
! TAGAAATATTTGTGCTACAT+GGG + chr6_1:5173610-5173629 None:intergenic 25.0%
! ATAGAAATATTTGTGCTACA+TGG + chr6_1:5173611-5173630 None:intergenic 25.0%
! TAAGGACAAAAAAAATAGGA+AGG + chr6_1:5173639-5173658 None:intergenic 25.0%
! TCATAAGAAATTGAGATGAT+TGG - chr6_1:5173788-5173807 Msa0870620:intron 25.0%
! ATGAAAAAATTCTTGTTGGA+AGG - chr6_1:5173897-5173916 Msa0870620:intron 25.0%
! AACTAGTAACTAATTTCTGT+CGG + chr6_1:5173944-5173963 None:intergenic 25.0%
!! GTAAGTTTAGTCGTATATTT+TGG - chr6_1:5174132-5174151 Msa0870620:intron 25.0%
!!! TTTAGTCGTATATTTTGGTT+TGG - chr6_1:5174137-5174156 Msa0870620:intron 25.0%
!!! TTAGTCGTATATTTTGGTTT+GGG - chr6_1:5174138-5174157 Msa0870620:intron 25.0%
! ATCTTATAAGAAAGCAAGAT+TGG - chr6_1:5174204-5174223 Msa0870620:intron 25.0%
! CAATCCAAATTCATGAAATA+GGG - chr6_1:5174495-5174514 Msa0870620:intron 25.0%
!!! GGTTTAGAATAATTTTGACA+TGG - chr6_1:5174591-5174610 Msa0870620:intron 25.0%
!!! TTTTTTTATCTTCTGTCATC+TGG - chr6_1:5174637-5174656 Msa0870620:intron 25.0%
!!! TTTTTTATCTTCTGTCATCT+GGG - chr6_1:5174638-5174657 Msa0870620:intron 25.0%
!!! CATTTTTTTTTTGGTGATCA+GGG + chr6_1:5174671-5174690 None:intergenic 25.0%
!!! ACATTTTTTTTTTGGTGATC+AGG + chr6_1:5174672-5174691 None:intergenic 25.0%
! AACTAACAACATTCATTTGA+TGG - chr6_1:5174821-5174840 Msa0870620:intron 25.0%
! ACTAACAACATTCATTTGAT+GGG - chr6_1:5174822-5174841 Msa0870620:intron 25.0%
! ATGTTTCATGTTATTATTGC+AGG - chr6_1:5175137-5175156 Msa0870620:CDS 25.0%
! TGTTTCATGTTATTATTGCA+GGG - chr6_1:5175138-5175157 Msa0870620:CDS 25.0%
! ATGTTAATGAAGAATGTACA+AGG - chr6_1:5175204-5175223 Msa0870620:CDS 25.0%
! TTGTTGGATTTGATTGGTTA+TGG - chr6_1:5169529-5169548 Msa0870620:CDS 30.0%
AGTTGGTTGTCTAATGTTAA+AGG - chr6_1:5169645-5169664 Msa0870620:intron 30.0%
GTTGTCTAATGTTAAAGGTT+TGG - chr6_1:5169650-5169669 Msa0870620:intron 30.0%
GTATTTCACTGATACATAGA+TGG - chr6_1:5169784-5169803 Msa0870620:CDS 30.0%
! CACAACTTTCTTTTGCAATT+TGG - chr6_1:5169816-5169835 Msa0870620:CDS 30.0%
!! TTTTTAGGAACAACTTGGAA+TGG + chr6_1:5169939-5169958 None:intergenic 30.0%
!! TACACTTTTTAGGAACAACT+TGG + chr6_1:5169944-5169963 None:intergenic 30.0%
AGATGAGAAGAATAGTAGAT+CGG - chr6_1:5170158-5170177 Msa0870620:intron 30.0%
AGAATGTTCTCATGGTATAT+GGG + chr6_1:5170527-5170546 None:intergenic 30.0%
AAGAATGTTCTCATGGTATA+TGG + chr6_1:5170528-5170547 None:intergenic 30.0%
TATTGGAAAGAATGTTCTCA+TGG + chr6_1:5170535-5170554 None:intergenic 30.0%
CATAACTTCAACAAGTTTAG+CGG - chr6_1:5170607-5170626 Msa0870620:intron 30.0%
TTGTTCACGTTATAATACAG+TGG - chr6_1:5170768-5170787 Msa0870620:intron 30.0%
TATAATACAGTGGATGGAAA+TGG - chr6_1:5170778-5170797 Msa0870620:intron 30.0%
TCGTTATACAGACATAAAGA+AGG - chr6_1:5170877-5170896 Msa0870620:intron 30.0%
!!! AAAAACTCGATATTTTGGTC+GGG + chr6_1:5170935-5170954 None:intergenic 30.0%
! CCACTAAAAACTCGATATTT+TGG + chr6_1:5170940-5170959 None:intergenic 30.0%
!! CCAAAATATCGAGTTTTTAG+TGG - chr6_1:5170937-5170956 Msa0870620:intron 30.0%
TTTATGTTGTGACCCTAATT+AGG - chr6_1:5171480-5171499 Msa0870620:intron 30.0%
TTATGTTGTGACCCTAATTA+GGG - chr6_1:5171481-5171500 Msa0870620:intron 30.0%
AAAAGGCTTATCAGTCTTTA+AGG - chr6_1:5171622-5171641 Msa0870620:intron 30.0%
ATTACTGTTGAGGTCTTTAA+AGG + chr6_1:5171663-5171682 None:intergenic 30.0%
TAAAGACCTCAACAGTAATA+AGG - chr6_1:5171664-5171683 Msa0870620:intron 30.0%
AAAGACCTCAACAGTAATAA+GGG - chr6_1:5171665-5171684 Msa0870620:intron 30.0%
TTAACATAGGTGTTAACCAT+GGG + chr6_1:5171761-5171780 None:intergenic 30.0%
TTTAACATAGGTGTTAACCA+TGG + chr6_1:5171762-5171781 None:intergenic 30.0%
TATCAAAACATTGGAGATAG+TGG - chr6_1:5171810-5171829 Msa0870620:intron 30.0%
!!! CATCTTGTACTTGTTTTTGT+TGG + chr6_1:5171838-5171857 None:intergenic 30.0%
CAACAAAAACAAGTACAAGA+TGG - chr6_1:5171836-5171855 Msa0870620:intron 30.0%
GATGGTAGCTAGTAAAAAAA+TGG - chr6_1:5171854-5171873 Msa0870620:intron 30.0%
GTAGCTAGTAAAAAAATGGT+TGG - chr6_1:5171858-5171877 Msa0870620:intron 30.0%
! TTGGAGTATTCATAAGTGTT+TGG - chr6_1:5171877-5171896 Msa0870620:intron 30.0%
TTGGTTAAAAGAACAAGTGT+TGG - chr6_1:5171896-5171915 Msa0870620:intron 30.0%
ATGGGATATTTAGGAAACAA+AGG - chr6_1:5171969-5171988 Msa0870620:intron 30.0%
! AAGAAAACGTGTTGTAGTTT+TGG - chr6_1:5172305-5172324 Msa0870620:intron 30.0%
!! TCACCATATTTTACTAGCTT+AGG - chr6_1:5172328-5172347 Msa0870620:intron 30.0%
!! ATTTTACTAGCTTAGGAAAC+TGG - chr6_1:5172335-5172354 Msa0870620:intron 30.0%
TGCAAAAGAGGATAAACTTA+GGG + chr6_1:5172488-5172507 None:intergenic 30.0%
TACATTGACCCAATCAAAAT+TGG + chr6_1:5172527-5172546 None:intergenic 30.0%
! TGACTTTCTATTTTCTTAGG+GGG + chr6_1:5172629-5172648 None:intergenic 30.0%
! GTGACTTTCTATTTTCTTAG+GGG + chr6_1:5172630-5172649 None:intergenic 30.0%
! GTGTGACTTTCTATTTTCTT+AGG + chr6_1:5172632-5172651 None:intergenic 30.0%
! TTTACTCTCTTTTGCACTTT+TGG + chr6_1:5172723-5172742 None:intergenic 30.0%
TGCAAAAGAGAGTAAACTTA+GGG - chr6_1:5172727-5172746 Msa0870620:CDS 30.0%
!! TAACCAACCGAATTTTAGAA+TGG - chr6_1:5172917-5172936 Msa0870620:CDS 30.0%
!!! AACCAACCGAATTTTAGAAT+GGG - chr6_1:5172918-5172937 Msa0870620:CDS 30.0%
! ATATCTAATTTGCATGGACT+TGG + chr6_1:5173088-5173107 None:intergenic 30.0%
! AATGTGTTACTCAATGTAAG+GGG + chr6_1:5173151-5173170 None:intergenic 30.0%
! GAAATGTGTTACTCAATGTA+AGG + chr6_1:5173153-5173172 None:intergenic 30.0%
TACATTGAGTAACACATTTC+GGG - chr6_1:5173153-5173172 Msa0870620:intron 30.0%
!!! GTTCCGTATTTTTTTAAGGT+GGG - chr6_1:5173454-5173473 Msa0870620:intron 30.0%
!!! TTCCGTATTTTTTTAAGGTG+GGG - chr6_1:5173455-5173474 Msa0870620:intron 30.0%
GGGGTGTATATAGAAATATT+TGG - chr6_1:5173475-5173494 Msa0870620:intron 30.0%
CTTCATTATGTCAATGTTTG+GGG + chr6_1:5173530-5173549 None:intergenic 30.0%
CCTTCATTATGTCAATGTTT+GGG + chr6_1:5173531-5173550 None:intergenic 30.0%
CCAAACATTGACATAATGAA+GGG - chr6_1:5173529-5173548 Msa0870620:intron 30.0%
!!! GTTAATGTTTTTGGTCCTTT+TGG - chr6_1:5173566-5173585 Msa0870620:intron 30.0%
ATATAGAATAACACGCCAAA+AGG + chr6_1:5173584-5173603 None:intergenic 30.0%
TATTAGTGAGGCACATTATT+AGG + chr6_1:5173722-5173741 None:intergenic 30.0%
GCGTATGAAAAAATTCTTGT+TGG - chr6_1:5173893-5173912 Msa0870620:intron 30.0%
!!! TAGTCGTATATTTTGGTTTG+GGG - chr6_1:5174139-5174158 Msa0870620:intron 30.0%
TATAAGAAAGCAAGATTGGA+AGG - chr6_1:5174208-5174227 Msa0870620:intron 30.0%
GCAATCCAAATTCATGAAAT+AGG - chr6_1:5174494-5174513 Msa0870620:intron 30.0%
GTTTACTTGAGAGTTAACAT+AGG - chr6_1:5174524-5174543 Msa0870620:intron 30.0%
! TTTTTATCTTCTGTCATCTG+GGG - chr6_1:5174639-5174658 Msa0870620:intron 30.0%
CTAACAACATTCATTTGATG+GGG - chr6_1:5174823-5174842 Msa0870620:intron 30.0%
TGTGATAGAATTCTATGGTA+TGG - chr6_1:5174850-5174869 Msa0870620:intron 30.0%
AGAATTCTATGGTATGGTAA+AGG - chr6_1:5174856-5174875 Msa0870620:intron 30.0%
TGATTGGATTGCAAAATTGT+TGG + chr6_1:5175012-5175031 None:intergenic 30.0%
ATACACAACACTTACATGAT+TGG + chr6_1:5175028-5175047 None:intergenic 30.0%
GTTTCATGTTATTATTGCAG+GGG - chr6_1:5175139-5175158 Msa0870620:CDS 30.0%
TTTCATGTTATTATTGCAGG+GGG - chr6_1:5175140-5175159 Msa0870620:CDS 30.0%
CTTCATTAACATTGAAAGTG+AGG + chr6_1:5175196-5175215 None:intergenic 30.0%
!! TCTGGTTTGTTGGATTTGAT+TGG - chr6_1:5169523-5169542 Msa0870620:CDS 35.0%
!!! GTTGTGATTGTTGTTTTCGT+CGG - chr6_1:5169588-5169607 Msa0870620:intron 35.0%
! GGTTTGGAATTATTCAGAGA+TGG - chr6_1:5169666-5169685 Msa0870620:intron 35.0%
!! GGTGACAAACTACACTTTTT+AGG + chr6_1:5169954-5169973 None:intergenic 35.0%
! GCACTTTTGTATGATCTCAT+TGG - chr6_1:5170004-5170023 Msa0870620:intron 35.0%
GATGAGAAGAATAGTAGATC+GGG - chr6_1:5170159-5170178 Msa0870620:intron 35.0%
GAAGACGAAAAAGACCTAAT+TGG - chr6_1:5170255-5170274 Msa0870620:intron 35.0%
!! CGCTAAACTTGTTGAAGTTA+TGG + chr6_1:5170609-5170628 None:intergenic 35.0%
TTTGAGTCATCACACCAATT+TGG - chr6_1:5170632-5170651 Msa0870620:intron 35.0%
TCACGTTATAATACAGTGGA+TGG - chr6_1:5170772-5170791 Msa0870620:intron 35.0%
!!! TGGTCTCATTGATTTTCGTT+AGG - chr6_1:5170957-5170976 Msa0870620:intron 35.0%
! TTTTCGTTAGGCTAATGACA+TGG - chr6_1:5170969-5170988 Msa0870620:intron 35.0%
!!! TTTTTTTTTCTTGTGGTGGC+CGG - chr6_1:5171132-5171151 Msa0870620:intron 35.0%
GACAATGCATAAGATATGCA+AGG + chr6_1:5171173-5171192 None:intergenic 35.0%
!! AATTAAGGGTTGGTCCTATT+TGG - chr6_1:5171530-5171549 Msa0870620:intron 35.0%
!! GATTTTATTGGCCTCCAAAT+AGG + chr6_1:5171547-5171566 None:intergenic 35.0%
! ACAACAAATTTGAGTTCCCA+TGG - chr6_1:5171742-5171761 Msa0870620:intron 35.0%
!! TGTGGTGTTATGGGATATTT+AGG - chr6_1:5171960-5171979 Msa0870620:intron 35.0%
TTTAGGAAACAAAGGTTGTG+TGG - chr6_1:5171977-5171996 Msa0870620:intron 35.0%
TTAGGAAACAAAGGTTGTGT+GGG - chr6_1:5171978-5171997 Msa0870620:intron 35.0%
! GGAGTTAGTATGTTGATTGA+AGG - chr6_1:5171999-5172018 Msa0870620:intron 35.0%
! TTGTAGCACATTTAGCTTCT+GGG - chr6_1:5172039-5172058 Msa0870620:intron 35.0%
! TTAGGAGAACATCTTTTCCT+AGG - chr6_1:5172111-5172130 Msa0870620:intron 35.0%
CATCATCCTCTAACAATCTT+AGG - chr6_1:5172143-5172162 Msa0870620:intron 35.0%
GCAAAAGAGGATAAACTTAG+GGG + chr6_1:5172487-5172506 None:intergenic 35.0%
GTGCAAAAGAGGATAAACTT+AGG + chr6_1:5172489-5172508 None:intergenic 35.0%
TCGTAAGATTGTGATGCTTA+GGG + chr6_1:5172600-5172619 None:intergenic 35.0%
ATCGTAAGATTGTGATGCTT+AGG + chr6_1:5172601-5172620 None:intergenic 35.0%
AGAAAATAGAAAGTCACACG+TGG - chr6_1:5172633-5172652 Msa0870620:CDS 35.0%
CATCCATATCACTTAAAGTG+AGG + chr6_1:5172661-5172680 None:intergenic 35.0%
!! TGCATTGACTTGGTCAAAAT+TGG - chr6_1:5172688-5172707 Msa0870620:CDS 35.0%
! TTGGTCAAAATTGGTCTGAA+GGG - chr6_1:5172697-5172716 Msa0870620:CDS 35.0%
GTGCAAAAGAGAGTAAACTT+AGG - chr6_1:5172726-5172745 Msa0870620:CDS 35.0%
GCAAAAGAGAGTAAACTTAG+GGG - chr6_1:5172728-5172747 Msa0870620:CDS 35.0%
!!! GGGGATGGTTTGTTTTTATA+AGG - chr6_1:5172747-5172766 Msa0870620:CDS 35.0%
! GTATCACAATCTTGCGATTT+TGG + chr6_1:5172775-5172794 None:intergenic 35.0%
GCAAGATTGTGATACTTAAG+AGG - chr6_1:5172780-5172799 Msa0870620:CDS 35.0%
!!! ACCAACCGAATTTTAGAATG+GGG - chr6_1:5172919-5172938 Msa0870620:CDS 35.0%
!! TTGGTCCCCATTCTAAAATT+CGG + chr6_1:5172927-5172946 None:intergenic 35.0%
AATTAACTGCACTGCTATGT+TGG + chr6_1:5173001-5173020 None:intergenic 35.0%
ACATAGCAGTGCAGTTAATT+CGG - chr6_1:5173001-5173020 Msa0870620:CDS 35.0%
! TTTAGTCTTTCTTAGGTAGC+AGG - chr6_1:5173035-5173054 Msa0870620:CDS 35.0%
AATTTGCATGGACTTGGATT+TGG + chr6_1:5173082-5173101 None:intergenic 35.0%
AATGGTAGCTTAGAGTACAT+AGG - chr6_1:5173124-5173143 Msa0870620:intron 35.0%
! ATGTGTTACTCAATGTAAGG+GGG + chr6_1:5173150-5173169 None:intergenic 35.0%
! TTATACTAGAGTACTTGGCT+AGG + chr6_1:5173217-5173236 None:intergenic 35.0%
! TGGACTTATACTAGAGTACT+TGG + chr6_1:5173222-5173241 None:intergenic 35.0%
! CCTTAGCATCGAACATTATT+TGG + chr6_1:5173242-5173261 None:intergenic 35.0%
CCAAATAATGTTCGATGCTA+AGG - chr6_1:5173239-5173258 Msa0870620:intron 35.0%
TAAAATTATCCAAACAGGGC+CGG - chr6_1:5173382-5173401 Msa0870620:intron 35.0%
AAAAAATACGGAACCCCTAT+CGG + chr6_1:5173448-5173467 None:intergenic 35.0%
!!! AGGGGTTCCGTATTTTTTTA+AGG - chr6_1:5173450-5173469 Msa0870620:intron 35.0%
!!! GGTTCCGTATTTTTTTAAGG+TGG - chr6_1:5173453-5173472 Msa0870620:intron 35.0%
!!! TCCGTATTTTTTTAAGGTGG+GGG - chr6_1:5173456-5173475 Msa0870620:intron 35.0%
ACCCCCACCTTAAAAAAATA+CGG + chr6_1:5173460-5173479 None:intergenic 35.0%
CCCAAACATTGACATAATGA+AGG - chr6_1:5173528-5173547 Msa0870620:intron 35.0%
CCCTTCATTATGTCAATGTT+TGG + chr6_1:5173532-5173551 None:intergenic 35.0%
CATTGACATAATGAAGGGTT+TGG - chr6_1:5173534-5173553 Msa0870620:intron 35.0%
GGCACATTATTAGGAACAAA+GGG + chr6_1:5173713-5173732 None:intergenic 35.0%
AGGCACATTATTAGGAACAA+AGG + chr6_1:5173714-5173733 None:intergenic 35.0%
!!! CTATTTTTGATTGGTGTGAG+TGG - chr6_1:5173825-5173844 Msa0870620:intron 35.0%
! TAGGCCATCAAATATCGATT+TGG - chr6_1:5174250-5174269 Msa0870620:intron 35.0%
GTGACCAAATCGATATTTGA+TGG + chr6_1:5174257-5174276 None:intergenic 35.0%
CATATTACTTGATTGCACGT+CGG - chr6_1:5174285-5174304 Msa0870620:intron 35.0%
TCATGAATTTGGATTGCCTA+CGG + chr6_1:5174491-5174510 None:intergenic 35.0%
GACATGGAATTCATTATGTG+TGG - chr6_1:5174607-5174626 Msa0870620:intron 35.0%
!! GTAGAAAAAAGTGCTGAAAC+AGG + chr6_1:5174934-5174953 None:intergenic 35.0%
ATCATCTAGCAAAGAACTTG+TGG - chr6_1:5174969-5174988 Msa0870620:intron 35.0%
TGGATTGCAAAATTGTTGGA+GGG + chr6_1:5175008-5175027 None:intergenic 35.0%
TTGGATTGCAAAATTGTTGG+AGG + chr6_1:5175009-5175028 None:intergenic 35.0%
ATTGGTTATGGCTCATCATG+CGG - chr6_1:5169541-5169560 Msa0870620:CDS 40.0%
TATTCAGAGATGGCTGAATC+CGG - chr6_1:5169676-5169695 Msa0870620:intron 40.0%
ATAATCCAACCAACCCAACT+CGG + chr6_1:5169851-5169870 None:intergenic 40.0%
AGAAGAATAGTAGATCGGGA+AGG - chr6_1:5170163-5170182 Msa0870620:intron 40.0%
TGTGAATTTAGTGGCAAACG+AGG - chr6_1:5170327-5170346 Msa0870620:intron 40.0%
GTGAATTTAGTGGCAAACGA+GGG - chr6_1:5170328-5170347 Msa0870620:intron 40.0%
! AATTTGGAATCTGTCGTGGA+GGG - chr6_1:5170648-5170667 Msa0870620:intron 40.0%
TAACGACATCCTCTAGACTT+TGG + chr6_1:5170863-5170882 None:intergenic 40.0%
AAACTGGTCGAATCGAAAAC+TGG + chr6_1:5171028-5171047 None:intergenic 40.0%
ATTCGACCAGTTTGACTGAT+CGG - chr6_1:5171035-5171054 Msa0870620:intron 40.0%
!!! TTTTTTTTCTTGTGGTGGCC+GGG - chr6_1:5171133-5171152 Msa0870620:intron 40.0%
TGCATAAGATATGCAAGGTC+CGG + chr6_1:5171168-5171187 None:intergenic 40.0%
TTTCAACGAGATTCCAAGTG+TGG + chr6_1:5171446-5171465 None:intergenic 40.0%
GCAGTCATCAACCCTAATTA+GGG + chr6_1:5171495-5171514 None:intergenic 40.0%
TGCAGTCATCAACCCTAATT+AGG + chr6_1:5171496-5171515 None:intergenic 40.0%
TTCAGCCCTTATTACTGTTG+AGG + chr6_1:5171673-5171692 None:intergenic 40.0%
ATCCATCAGTGGCAACAAAT+TGG - chr6_1:5171694-5171713 Msa0870620:intron 40.0%
!! TTCCAATTTGTTGCCACTGA+TGG + chr6_1:5171699-5171718 None:intergenic 40.0%
! AGAGTTTGTTCAGTTGCATG+TGG - chr6_1:5171942-5171961 Msa0870620:intron 40.0%
! TTCAGTTGCATGTGGTGTTA+TGG - chr6_1:5171950-5171969 Msa0870620:intron 40.0%
!! TCAGTTGCATGTGGTGTTAT+GGG - chr6_1:5171951-5171970 Msa0870620:intron 40.0%
! GTTGTAGCACATTTAGCTTC+TGG - chr6_1:5172038-5172057 Msa0870620:intron 40.0%
! TGTAGCACATTTAGCTTCTG+GGG - chr6_1:5172040-5172059 Msa0870620:intron 40.0%
! TTAGCTTCTGGGGAAAAGAA+AGG - chr6_1:5172050-5172069 Msa0870620:intron 40.0%
AGAAAGGTGATGAAGGTAGA+AGG - chr6_1:5172066-5172085 Msa0870620:intron 40.0%
! GGATGATGTTTTGTGTTCCT+AGG + chr6_1:5172131-5172150 None:intergenic 40.0%
TCATGGCCTAAGATTGTTAG+AGG + chr6_1:5172152-5172171 None:intergenic 40.0%
GGTAGAGACAAACTTACTCA+TGG + chr6_1:5172169-5172188 None:intergenic 40.0%
GCAAGATTGTGATACTCAGA+GGG + chr6_1:5172427-5172446 None:intergenic 40.0%
GTATCACAATCTTGCGATGT+TGG - chr6_1:5172432-5172451 Msa0870620:intron 40.0%
! GAGGACTAAAAGTGCAAAAG+AGG + chr6_1:5172500-5172519 None:intergenic 40.0%
!! TCCTCCAGACCAATTTTGAT+TGG - chr6_1:5172515-5172534 Msa0870620:intron 40.0%
!!! CCTCCAGACCAATTTTGATT+GGG - chr6_1:5172516-5172535 Msa0870620:intron 40.0%
TGACCCAATCAAAATTGGTC+TGG + chr6_1:5172522-5172541 None:intergenic 40.0%
CGTAAGATTGTGATGCTTAG+GGG + chr6_1:5172599-5172618 None:intergenic 40.0%
GCACCTCACTTTAAGTGATA+TGG - chr6_1:5172655-5172674 Msa0870620:CDS 40.0%
! CTTGGTCAAAATTGGTCTGA+AGG - chr6_1:5172696-5172715 Msa0870620:CDS 40.0%
AAGAGAGTAAACTTAGGGGA+TGG - chr6_1:5172732-5172751 Msa0870620:CDS 40.0%
!! TCCCCATTCTAAAATTCGGT+TGG + chr6_1:5172923-5172942 None:intergenic 40.0%
TGTGAGTGGTAAAAGACTCA+AGG - chr6_1:5173839-5173858 Msa0870620:intron 40.0%
TTGTCTGAATTTGTGACCGT+AGG - chr6_1:5174472-5174491 Msa0870620:intron 40.0%
GCAGGTGTGATAGAATTCTA+TGG - chr6_1:5174845-5174864 Msa0870620:intron 40.0%
TTGGTTATGGCTCATCATGC+GGG - chr6_1:5169542-5169561 Msa0870620:CDS 45.0%
CTTTGTTGCTGCATTCGAGT+TGG - chr6_1:5169566-5169585 Msa0870620:CDS 45.0%
!!! GTGATTGTTGTTTTCGTCGG+TGG - chr6_1:5169591-5169610 Msa0870620:intron 45.0%
ATTCAGAGATGGCTGAATCC+GGG - chr6_1:5169677-5169696 Msa0870620:intron 45.0%
!! TGGTGCTGGTTCGTTTGAAA+CGG - chr6_1:5169704-5169723 Msa0870620:intron 45.0%
! TGGTTCGTTTGAAACGGAGA+TGG - chr6_1:5169710-5169729 Msa0870620:intron 45.0%
TGGTCCGTGTTCTATTCAGA+GGG - chr6_1:5169745-5169764 Msa0870620:CDS 45.0%
TCAGCCCTCTGAATAGAACA+CGG + chr6_1:5169752-5169771 None:intergenic 45.0%
TAATCCAACCAACCCAACTC+GGG + chr6_1:5169850-5169869 None:intergenic 45.0%
! GGTTGGTTGGATTATACCTG+TGG - chr6_1:5169856-5169875 Msa0870620:CDS 45.0%
! ACCGACTCTATTGCGCTTAA+AGG - chr6_1:5169971-5169990 Msa0870620:intron 45.0%
CCCTTTAAGCGCAATAGAGT+CGG + chr6_1:5169975-5169994 None:intergenic 45.0%
CCGACTCTATTGCGCTTAAA+GGG - chr6_1:5169972-5169991 Msa0870620:intron 45.0%
!! ATGGGATGAGTGGACTGTTT+AGG + chr6_1:5170509-5170528 None:intergenic 45.0%
CTCATGGTATATGGGATGAG+TGG + chr6_1:5170519-5170538 None:intergenic 45.0%
! CACCAATTTGGAATCTGTCG+TGG - chr6_1:5170644-5170663 Msa0870620:intron 45.0%
CTCCACGACAGATTCCAAAT+TGG + chr6_1:5170649-5170668 None:intergenic 45.0%
! CAATTTGGAATCTGTCGTGG+AGG - chr6_1:5170647-5170666 Msa0870620:intron 45.0%
TGGTCGAATCGAAAACTGGT+GGG + chr6_1:5171024-5171043 None:intergenic 45.0%
TTCGACCAGTTTGACTGATC+GGG - chr6_1:5171036-5171055 Msa0870620:intron 45.0%
!!! TTTTTTTCTTGTGGTGGCCG+GGG - chr6_1:5171134-5171153 Msa0870620:intron 45.0%
GCATAAGATATGCAAGGTCC+GGG + chr6_1:5171167-5171186 None:intergenic 45.0%
TGCATTGTCCATACCAACTG+AGG - chr6_1:5171184-5171203 Msa0870620:intron 45.0%
! TGAGCATACCTCAGTTGGTA+TGG + chr6_1:5171195-5171214 None:intergenic 45.0%
!! TAAGGGTTGGTCCTATTTGG+AGG - chr6_1:5171533-5171552 Msa0870620:intron 45.0%
GGGGAAAAGAAAGGTGATGA+AGG - chr6_1:5172059-5172078 Msa0870620:intron 45.0%
CGCAAGATTGTGATACTCAG+AGG + chr6_1:5172428-5172447 None:intergenic 45.0%
! CCCAATCAAAATTGGTCTGG+AGG + chr6_1:5172519-5172538 None:intergenic 45.0%
!! ATGCCACGTATGCATTGACT+TGG - chr6_1:5172678-5172697 Msa0870620:CDS 45.0%
TGACCAAGTCAATGCATACG+TGG + chr6_1:5172684-5172703 None:intergenic 45.0%
!! AACACATTTCGGGTTCTTGC+TGG - chr6_1:5173163-5173182 Msa0870620:intron 45.0%
ATTACTTGATTGCACGTCGG+TGG - chr6_1:5174288-5174307 Msa0870620:intron 45.0%
CACCGTCTAACATCAATCTG+AGG - chr6_1:5174421-5174440 Msa0870620:intron 45.0%
GGCCTCAGATTGATGTTAGA+CGG + chr6_1:5174426-5174445 None:intergenic 45.0%
CAAATTCACACGTTGCGCTT+TGG + chr6_1:5174450-5174469 None:intergenic 45.0%
CAAAGCGCAACGTGTGAATT+TGG - chr6_1:5174448-5174467 Msa0870620:intron 45.0%
CAACATTCATTTGATGGGGC+AGG - chr6_1:5174827-5174846 Msa0870620:intron 45.0%
!!! TTTTATTTTTATTTTTTGTT+TGG - chr6_1:5171261-5171280 Msa0870620:intron 5.0%
!!! AATTTAAAATTATTGAATTA+AGG - chr6_1:5171515-5171534 Msa0870620:intron 5.0%
!!! ATTTAAAATTATTGAATTAA+GGG - chr6_1:5171516-5171535 Msa0870620:intron 5.0%
!!! AAAAAAATACATTTTTTTTT+TGG + chr6_1:5174680-5174699 None:intergenic 5.0%
GTGGTCCGTGTTCTATTCAG+AGG - chr6_1:5169744-5169763 Msa0870620:CDS 50.0%
AATCCAACCAACCCAACTCG+GGG + chr6_1:5169849-5169868 None:intergenic 50.0%
! GTGAACAACTGAAGCACCAC+AGG + chr6_1:5169875-5169894 None:intergenic 50.0%
GGCTGCAGTGTGAAACATGT+AGG - chr6_1:5170678-5170697 Msa0870620:intron 50.0%
!!! GATATTTTGGTCGGGTCTGC+GGG + chr6_1:5170927-5170946 None:intergenic 50.0%
!!! CGATATTTTGGTCGGGTCTG+CGG + chr6_1:5170928-5170947 None:intergenic 50.0%
! TCGAAAACTGGTGGGTAGAG+CGG + chr6_1:5171016-5171035 None:intergenic 50.0%
CTGGTCGAATCGAAAACTGG+TGG + chr6_1:5171025-5171044 None:intergenic 50.0%
AAGGGCTGAAGATCCATCAG+TGG - chr6_1:5171683-5171702 Msa0870620:intron 50.0%
ATTCACACGTTGCGCTTTGG+TGG + chr6_1:5174447-5174466 None:intergenic 50.0%
TTATTGCAGGGGGTGAGCAA+AGG - chr6_1:5175150-5175169 Msa0870620:CDS 50.0%
!! GGCTGCTGACTCAGTTGAGT+TGG - chr6_1:5169628-5169647 Msa0870620:intron 55.0%
! AACACGGACCACAGTGTCGA+TGG + chr6_1:5169736-5169755 None:intergenic 55.0%
ATCCAACCAACCCAACTCGG+GGG + chr6_1:5169848-5169867 None:intergenic 55.0%
! CGAAAACTGGTGGGTAGAGC+GGG + chr6_1:5171015-5171034 None:intergenic 55.0%
CTCGACCCGATCAGTCAAAC+TGG + chr6_1:5171044-5171063 None:intergenic 55.0%
AAGGTCCGGGATTCAAACCC+CGG + chr6_1:5171154-5171173 None:intergenic 55.0%
CCTCGTGAGCATACCTCAGT+TGG + chr6_1:5171200-5171219 None:intergenic 55.0%
CCAACTGAGGTATGCTCACG+AGG - chr6_1:5171197-5171216 Msa0870620:intron 55.0%
GCCTAAGACCCATGCCGATA+GGG - chr6_1:5173431-5173450 Msa0870620:intron 55.0%
CCTAAGACCCATGCCGATAG+GGG - chr6_1:5173432-5173451 Msa0870620:intron 55.0%
TACGGAACCCCTATCGGCAT+GGG + chr6_1:5173442-5173461 None:intergenic 55.0%
ATACGGAACCCCTATCGGCA+TGG + chr6_1:5173443-5173462 None:intergenic 55.0%
TCGGTGGCAACCTGCACGAT+GGG - chr6_1:5169607-5169626 Msa0870620:intron 60.0%
GATGGCTGAATCCGGGTGTG+TGG - chr6_1:5169684-5169703 Msa0870620:intron 60.0%
TGAATCCGGGTGTGTGGTGC+TGG - chr6_1:5169690-5169709 Msa0870620:intron 60.0%
ACGAACCAGCACCACACACC+CGG + chr6_1:5169698-5169717 None:intergenic 60.0%
GGAGATGGCCATCGACACTG+TGG - chr6_1:5169725-5169744 Msa0870620:CDS 60.0%
TCCAACCAACCCAACTCGGG+GGG + chr6_1:5169847-5169866 None:intergenic 60.0%
TCTGTCGTGGAGGGCAGTTG+CGG - chr6_1:5170657-5170676 Msa0870620:intron 60.0%
AGGCATGCAGCAGAGCCATC+AGG - chr6_1:5170698-5170717 Msa0870620:intron 60.0%
TGCAGCAGAGCCATCAGGTG+TGG - chr6_1:5170703-5170722 Msa0870620:intron 60.0%
GCTGCTAGCACCACACCTGA+TGG + chr6_1:5170716-5170735 None:intergenic 60.0%
GTCTTAGGCCATCGCAACCC+CGG + chr6_1:5173420-5173439 None:intergenic 60.0%
GGCCTAAGACCCATGCCGAT+AGG - chr6_1:5173430-5173449 Msa0870620:intron 60.0%
CCCCTATCGGCATGGGTCTT+AGG + chr6_1:5173435-5173454 None:intergenic 60.0%
GATTGCACGTCGGTGGTCGT+TGG - chr6_1:5174295-5174314 Msa0870620:intron 60.0%
GTCGGTGGCAACCTGCACGA+TGG - chr6_1:5169606-5169625 Msa0870620:intron 65.0%
GAGTCAGCAGCCCATCGTGC+AGG + chr6_1:5169620-5169639 None:intergenic 65.0%
TGGGTAGAGCGGGTCGAGCA+AGG + chr6_1:5171005-5171024 None:intergenic 65.0%
GGTGGCCGGGGTTTGAATCC+CGG - chr6_1:5171146-5171165 Msa0870620:intron 65.0%
ATGCTAGGGCCGGCCCTGTT+TGG + chr6_1:5173394-5173413 None:intergenic 65.0%
AACAGGGCCGGCCCTAGCAT+AGG - chr6_1:5173394-5173413 Msa0870620:intron 65.0%
CGCAACCCCGGCCTATGCTA+GGG + chr6_1:5173408-5173427 None:intergenic 65.0%
TCGCAACCCCGGCCTATGCT+AGG + chr6_1:5173409-5173428 None:intergenic 65.0%
AGCATAGGCCGGGGTTGCGA+TGG - chr6_1:5173409-5173428 Msa0870620:intron 65.0%
TTTGGGCTCGCCCCCCGAGT+TGG - chr6_1:5169834-5169853 Msa0870620:CDS 70.0%
TTGGGCTCGCCCCCCGAGTT+GGG - chr6_1:5169835-5169854 Msa0870620:CDS 70.0%
!! GCCCCCCGAGTTGGGTTGGT+TGG - chr6_1:5169843-5169862 Msa0870620:CDS 70.0%
ACCCCGGCCTATGCTAGGGC+CGG + chr6_1:5173404-5173423 None:intergenic 70.0%
! GCTCGCCCCCCGAGTTGGGT+TGG - chr6_1:5169839-5169858 Msa0870620:CDS 75.0%
GGGCCGGCCCTAGCATAGGC+CGG - chr6_1:5173398-5173417 Msa0870620:intron 75.0%
GGCCGGCCCTAGCATAGGCC+GGG - chr6_1:5173399-5173418 Msa0870620:intron 75.0%
GCCGGCCCTAGCATAGGCCG+GGG - chr6_1:5173400-5173419 Msa0870620:intron 75.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 5169519 5175233 5169519 ID=Msa0870620;Name=Msa0870620
chr6_1 mRNA 5169519 5175233 5169519 ID=Msa0870620-mRNA-1;Parent=Msa0870620;Name=Msa0870620-mRNA-1;_AED=0.48;_eAED=0.48;_QI=0|0|0|0.6|1|1|5|0|351
chr6_1 exon 5175086 5175233 5175086 ID=Msa0870620-mRNA-1:exon:1670;Parent=Msa0870620-mRNA-1
chr6_1 exon 5174013 5174125 5174013 ID=Msa0870620-mRNA-1:exon:1669;Parent=Msa0870620-mRNA-1
chr6_1 exon 5172581 5173116 5172581 ID=Msa0870620-mRNA-1:exon:1668;Parent=Msa0870620-mRNA-1
chr6_1 exon 5169720 5169903 5169720 ID=Msa0870620-mRNA-1:exon:1667;Parent=Msa0870620-mRNA-1
chr6_1 exon 5169519 5169593 5169519 ID=Msa0870620-mRNA-1:exon:1666;Parent=Msa0870620-mRNA-1
chr6_1 CDS 5175086 5175233 5175086 ID=Msa0870620-mRNA-1:cds;Parent=Msa0870620-mRNA-1
chr6_1 CDS 5174013 5174125 5174013 ID=Msa0870620-mRNA-1:cds;Parent=Msa0870620-mRNA-1
chr6_1 CDS 5172581 5173116 5172581 ID=Msa0870620-mRNA-1:cds;Parent=Msa0870620-mRNA-1
chr6_1 CDS 5169720 5169903 5169720 ID=Msa0870620-mRNA-1:cds;Parent=Msa0870620-mRNA-1
chr6_1 CDS 5169519 5169593 5169519 ID=Msa0870620-mRNA-1:cds;Parent=Msa0870620-mRNA-1
Gene Sequence

>Msa0870620

ATGATCTGGTTTGTTGGATTTGATTGGTTATGGCTCATCATGCGGGTCTTTGTTGCTGCATTCGAGTTGGTTGTGATTGTTGTTTTCGTCGGTGGCAACCTGCACGATGGGCTGCTGACTCAGTTGAGTTGGTTGTCTAATGTTAAAGCGGATTTTGAGTCATCACACCAATTTGGAATCTGTCGTGGAGGGCAGTTGCGGCTGCAGTGTGAAACATGTAGGCATGCAGCAGAGCCATCAGGTGTGGTGCTAGCAGCAACCTCTTTAAGGTTTCAAGAGATTGTACCTTTAAAGACCTCAACAGTAATAAGGGCTGAAGATCCATCAGTGGCAACAAATTGGAATAATCTTATAGGAAAAACACTAAACAACAAATTTGAGTTCCCATGGTTAACACCTATGTTAAATTCATCCTTATCAAGTGATCAAGAAAATTATCAAAACATTGGAGATAGTGGAACCAACAAAAACAAGTACAAGATGGTAGCTAGTAAAAAAATGGTTGGAGTATTCATAAGTGTTTGGTTAAAAGAACAAGTGTTGGAAAAATATTGTGTTTCAAATGTGAGAGTTTGTTCAGTTGCATGTGGTGTTATGGGATATTTAGGAAACAAAGGTTGTGTGGGAGTTAGTATGTTGATTGAAGGAACAAGTTTTTGTTTTGTTGTAGCACATTTAGCTTCTGGGGAAAAGAAAGGTGATGAAGGTAGAAGGAATCATCAAGTTGAAGAAATTTTTAGGAGAACATCTTTTCCTAGGAACACAAAACATCATCCTCTAACAATCTTAGGCCATGAGTGTGATAGAATTCTATGGTATGGTAAAGGAGTAGAACAACTTTACTATATTAGAAGTGAAAGCAAGTTCTCTGATCATCGTCCTGTTTCAGCACTTTTTTCTACACATATTGAAATCAAATCATCTAGCAAAGAACTTGTGGAAATGCAAAATATCCCTCCAACAATTTTGCAATCCAATCATGGGGTGAGCAAAGGAGAAGAAGATGAAAAATTTACCTCACTTTCAATGTTAATGAAGAATGTACAAGGCTGCTAA

Protein sequence

>Msa0870620

MIWFVGFDWLWLIMRVFVAAFELVVIVVFVGGNLHDGLLTQLSWLSNVKADFESSHQFGICRGGQLRLQCETCRHAAEPSGVVLAATSLRFQEIVPLKTSTVIRAEDPSVATNWNNLIGKTLNNKFEFPWLTPMLNSSLSSDQENYQNIGDSGTNKNKYKMVASKKMVGVFISVWLKEQVLEKYCVSNVRVCSVACGVMGYLGNKGCVGVSMLIEGTSFCFVVAHLASGEKKGDEGRRNHQVEEIFRRTSFPRNTKHHPLTILGHECDRILWYGKGVEQLYYIRSESKFSDHRPVSALFSTHIEIKSSSKELVEMQNIPPTILQSNHGVSKGEEDEKFTSLSMLMKNVQGC*