Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1048680 | XP_003621179.1 | 98.925 | 93 | 1 | 0 | 1 | 93 | 1 | 93 | 7.76e-56 | 177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1048680 | sp|Q9LJX1|PRE5_ARATH | 72.826 | 92 | 23 | 2 | 1 | 91 | 1 | 91 | 2.38e-36 | 121 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1048680 | G7KZY5 | 98.925 | 93 | 1 | 0 | 1 | 93 | 1 | 93 | 3.71e-56 | 177 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1048680 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1006830 | Msa1048680 | 0.827511 | 1.502333e-54 | -8.615850e-47 |
| Msa1048680 | Msa1100460 | 0.884296 | 2.163985e-71 | -8.615850e-47 |
| Msa1048680 | Msa1135900 | 0.902033 | 1.464935e-78 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1048680 | MtrunA17_Chr7g0217141 | 98.925 | 93 | 1 | 0 | 1 | 93 | 1 | 93 | 7.14e-60 | 177 |
| Msa1048680 | MtrunA17_Chr6g0453041 | 84.615 | 78 | 12 | 0 | 16 | 93 | 15 | 92 | 3.81e-40 | 127 |
| Msa1048680 | MtrunA17_Chr8g0362131 | 73.494 | 83 | 21 | 1 | 9 | 91 | 10 | 91 | 9.25e-34 | 111 |
| Msa1048680 | MtrunA17_Chr3g0093001 | 74.359 | 78 | 18 | 1 | 16 | 93 | 17 | 92 | 1.16e-32 | 108 |
| Msa1048680 | MtrunA17_Chr5g0416431 | 69.737 | 76 | 23 | 0 | 16 | 91 | 17 | 92 | 1.09e-31 | 106 |
| Msa1048680 | MtrunA17_Chr7g0237771 | 45.205 | 73 | 40 | 0 | 6 | 78 | 2 | 74 | 1.40e-11 | 55.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1048680 | AT3G28857.1 | 72.826 | 92 | 23 | 2 | 1 | 91 | 1 | 91 | 2.42e-37 | 121 |
| Msa1048680 | AT1G26945.1 | 77.333 | 75 | 17 | 0 | 18 | 92 | 19 | 93 | 3.63e-34 | 113 |
| Msa1048680 | AT5G39860.1 | 71.250 | 80 | 22 | 1 | 13 | 91 | 12 | 91 | 2.57e-32 | 108 |
| Msa1048680 | AT3G47710.1 | 62.766 | 94 | 32 | 2 | 1 | 93 | 1 | 92 | 3.37e-31 | 105 |
| Msa1048680 | AT5G15160.1 | 69.737 | 76 | 22 | 1 | 18 | 92 | 18 | 93 | 4.58e-30 | 102 |
| Msa1048680 | AT1G74500.1 | 68.354 | 79 | 22 | 2 | 16 | 93 | 17 | 93 | 7.27e-29 | 99.8 |
Find 50 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACTAATTTAGCTTAATTA+AGG | 0.234688 | 7_2:-10451065 | Msa1048680:five_prime_UTR |
| TGCAAACAAGGTCGATGATT+TGG | 0.301526 | 7_2:+10450984 | None:intergenic |
| TAAGTTTCTGATATAGTTGC+AGG | 0.316132 | 7_2:+10448333 | None:intergenic |
| AACATTTGGCCAATTAGCTT+TGG | 0.337798 | 7_2:+10451351 | None:intergenic |
| CATGCAGGTACCAGCTTCTA+AGG | 0.347667 | 7_2:-10448368 | Msa1048680:intron |
| CCTAAGATTGTCTCAGTTGT+TGG | 0.377561 | 7_2:-10448287 | Msa1048680:CDS |
| TATAGTTGCAGGTTTCTTGT+AGG | 0.377852 | 7_2:+10448344 | None:intergenic |
| AGAAACTATTAATTCATCAT+TGG | 0.386959 | 7_2:+10448212 | None:intergenic |
| TAATTCATCATTGGTTAAGT+AGG | 0.403741 | 7_2:+10448221 | None:intergenic |
| TTAAGCTAAATTAGTGCAAT+GGG | 0.405387 | 7_2:+10451071 | None:intergenic |
| GTGCTGAAGCTTCAATCATT+AGG | 0.419766 | 7_2:-10448246 | Msa1048680:CDS |
| TTGGAAGGGAAGAAAACATT+TGG | 0.426921 | 7_2:+10451337 | None:intergenic |
| CTTTGGAAAAGGAGTGGACT+AGG | 0.431847 | 7_2:+10451368 | None:intergenic |
| TTGTTCCTGAGATTCGTAAC+AGG | 0.433720 | 7_2:-10450949 | Msa1048680:CDS |
| AAAGTGTTGAAAGAGGTATA+AGG | 0.442626 | 7_2:+10451262 | None:intergenic |
| GAGGTGTAAGATATGATATA+TGG | 0.450697 | 7_2:+10451224 | None:intergenic |
| TAATGACTTCAGTTGGATAG+AGG | 0.463225 | 7_2:-10447974 | Msa1048680:three_prime_UTR |
| ATTAAGCTAAATTAGTGCAA+TGG | 0.469279 | 7_2:+10451070 | None:intergenic |
| TGGCCAATTAGCTTTGGAAA+AGG | 0.486700 | 7_2:+10451357 | None:intergenic |
| GACACAAGCTATATATATAG+TGG | 0.488522 | 7_2:+10451176 | None:intergenic |
| CGAAGGTCAAGGCAACAATC+AGG | 0.491771 | 7_2:-10451031 | Msa1048680:CDS |
| TATATATAGTGGAAGGGGAA+TGG | 0.503862 | 7_2:+10451187 | None:intergenic |
| AAGAGGTATAAGGAAGGAAA+AGG | 0.508895 | 7_2:+10451272 | None:intergenic |
| GAGCGCCTGTTACGAATCTC+AGG | 0.511807 | 7_2:+10450944 | None:intergenic |
| CCAACAACTGAGACAATCTT+AGG | 0.515600 | 7_2:+10448287 | None:intergenic |
| TCATTATATATGTTATAGCT+AGG | 0.523956 | 7_2:-10451126 | Msa1048680:five_prime_UTR |
| TCTTGTAGGACCTTAGAAGC+TGG | 0.539736 | 7_2:+10448358 | None:intergenic |
| TTACTGTACTCTCTCTATTG+TGG | 0.542121 | 7_2:-10451300 | Msa1048680:five_prime_UTR |
| AACAATCAGGAGGGTCTACT+CGG | 0.547851 | 7_2:-10451018 | Msa1048680:CDS |
| AGCTATATATATAGTGGAAG+GGG | 0.549770 | 7_2:+10451182 | None:intergenic |
| TATAGTGGAAGGGGAATGGA+AGG | 0.551095 | 7_2:+10451191 | None:intergenic |
| CAAGCTATATATATAGTGGA+AGG | 0.558395 | 7_2:+10451180 | None:intergenic |
| AGTAAAGTAGACAACAATGT+TGG | 0.560866 | 7_2:+10451318 | None:intergenic |
| AATGGAAGGAGTAGATAAAG+AGG | 0.568296 | 7_2:+10451205 | None:intergenic |
| AAGCTATATATATAGTGGAA+GGG | 0.569743 | 7_2:+10451181 | None:intergenic |
| AAGTAGACAACAATGTTGGA+AGG | 0.575963 | 7_2:+10451322 | None:intergenic |
| TGTTGAAAGAGGTATAAGGA+AGG | 0.577963 | 7_2:+10451266 | None:intergenic |
| GATAGTGTAATGACTTCAGT+TGG | 0.579731 | 7_2:-10447981 | Msa1048680:three_prime_UTR |
| AATGGAGAAAGTGTTGAAAG+AGG | 0.582340 | 7_2:+10451255 | None:intergenic |
| GTTGACGCAATTTGCAAACA+AGG | 0.588186 | 7_2:+10450972 | None:intergenic |
| TCGTAACAGGCGCTCTGACA+AGG | 0.592126 | 7_2:-10450936 | Msa1048680:intron |
| AATTAGCTTTGGAAAAGGAG+TGG | 0.597808 | 7_2:+10451362 | None:intergenic |
| AGTAGACAACAATGTTGGAA+GGG | 0.605803 | 7_2:+10451323 | None:intergenic |
| TATCAGAAACTTACAAAGTG+AGG | 0.615011 | 7_2:-10448323 | Msa1048680:CDS |
| GGTATAAGGAAGGAAAAGGA+TGG | 0.615207 | 7_2:+10451276 | None:intergenic |
| ATATGTCTAGTCGAAGGTCA+AGG | 0.620989 | 7_2:-10451042 | Msa1048680:CDS |
| AGGTCAAGGCAACAATCAGG+AGG | 0.632611 | 7_2:-10451028 | Msa1048680:CDS |
| TTAAGGATATGTCTAGTCGA+AGG | 0.649414 | 7_2:-10451048 | Msa1048680:exon |
| AGCACTATCAGAATCAATTG+TGG | 0.660250 | 7_2:+10448264 | None:intergenic |
| GGTCAAGGCAACAATCAGGA+GGG | 0.687654 | 7_2:-10451027 | Msa1048680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTAATATAAATATCTTTTA+TGG | + | chr7_2:10449143-10449162 | None:intergenic | 10.0% |
| !!! | TATTTATATTAAGTTTTACT+TGG | - | chr7_2:10449150-10449169 | Msa1048680:intron | 10.0% |
| !! | TGTATATATATATATATATG+GGG | + | chr7_2:10449949-10449968 | None:intergenic | 10.0% |
| !! | TTAAAATGTCTTATAAAAAA+GGG | + | chr7_2:10450412-10450431 | None:intergenic | 10.0% |
| !!! | TTTAAAATGTCTTATAAAAA+AGG | + | chr7_2:10450413-10450432 | None:intergenic | 10.0% |
| !!! | ATAATTATTTTAGTATTTAG+AGG | + | chr7_2:10450459-10450478 | None:intergenic | 10.0% |
| !!! | TACTTCAAATATTTTGAATT+AGG | + | chr7_2:10448440-10448459 | None:intergenic | 15.0% |
| !! | TAAAATTAGGTCATTTAAAA+CGG | + | chr7_2:10448492-10448511 | None:intergenic | 15.0% |
| !!! | ATAGTACACTTTTTAAAATT+AGG | + | chr7_2:10448505-10448524 | None:intergenic | 15.0% |
| !! | TTATGTATTAATAGAAAATG+AGG | + | chr7_2:10448546-10448565 | None:intergenic | 15.0% |
| !!! | AAGTTTAGACTTTTTTTTAA+AGG | + | chr7_2:10448800-10448819 | None:intergenic | 15.0% |
| !! | TTTAAAAAAAAGTCTAAACT+TGG | - | chr7_2:10448799-10448818 | Msa1048680:intron | 15.0% |
| !! | CCTATTTATAAGAAAAATTT+GGG | + | chr7_2:10449002-10449021 | None:intergenic | 15.0% |
| !! | TCCTATTTATAAGAAAAATT+TGG | + | chr7_2:10449003-10449022 | None:intergenic | 15.0% |
| !!! | CATTGGTTATTTATTTATTT+TGG | + | chr7_2:10449419-10449438 | None:intergenic | 15.0% |
| !!! | ATATTTTTTTAACACCTATT+TGG | - | chr7_2:10449497-10449516 | Msa1048680:intron | 15.0% |
| !!! | TATTTTTTTAACACCTATTT+GGG | - | chr7_2:10449498-10449517 | Msa1048680:intron | 15.0% |
| !!! | CATATATATCTTCATTTTTA+AGG | + | chr7_2:10450306-10450325 | None:intergenic | 15.0% |
| !! | TTCTATATAACTTTACTATT+TGG | + | chr7_2:10450487-10450506 | None:intergenic | 15.0% |
| !!! | TTACTATAGTCATTTTTTTT+AGG | - | chr7_2:10450531-10450550 | Msa1048680:intron | 15.0% |
| !!! | ATGGTATTTATTTAGAATTT+TGG | + | chr7_2:10450620-10450639 | None:intergenic | 15.0% |
| !! | ATATGAAATTAATTAAAGTG+TGG | + | chr7_2:10450842-10450861 | None:intergenic | 15.0% |
| !! | TCATTATATATGTTATAGCT+AGG | - | chr7_2:10448149-10448168 | Msa1048680:three_prime_UTR | 20.0% |
| !!! | AAAATTAGGTCATTTAAAAC+GGG | + | chr7_2:10448491-10448510 | None:intergenic | 20.0% |
| !! | TTAAGTTAAAAATTGTGCAT+TGG | - | chr7_2:10448666-10448685 | Msa1048680:intron | 20.0% |
| !!! | ATCAAGATAGTATCATTTTA+GGG | + | chr7_2:10448761-10448780 | None:intergenic | 20.0% |
| !! | TCAACAAAAGTTAATGTATA+TGG | - | chr7_2:10448940-10448959 | Msa1048680:intron | 20.0% |
| !!! | CCCAAATTTTTCTTATAAAT+AGG | - | chr7_2:10448999-10449018 | Msa1048680:intron | 20.0% |
| !!! | ATTTTTCTTATAAATAGGAC+CGG | - | chr7_2:10449004-10449023 | Msa1048680:intron | 20.0% |
| !!! | TATATTAAGTTTTACTTGGA+TGG | - | chr7_2:10449154-10449173 | Msa1048680:intron | 20.0% |
| !! | ATTAATAACCAATGATAGTA+AGG | - | chr7_2:10449242-10449261 | Msa1048680:intron | 20.0% |
| !! | TTAATAACCAATGATAGTAA+GGG | - | chr7_2:10449243-10449262 | Msa1048680:intron | 20.0% |
| !!! | TGATATGTGCTATATTTTAT+TGG | + | chr7_2:10449538-10449557 | None:intergenic | 20.0% |
| !!! | TACTCATTCTAAAAAATAAG+TGG | - | chr7_2:10449760-10449779 | Msa1048680:intron | 20.0% |
| !!! | ACTCATTCTAAAAAATAAGT+GGG | - | chr7_2:10449761-10449780 | Msa1048680:intron | 20.0% |
| !! | AAGTTAATAAATACACCTTA+AGG | + | chr7_2:10449867-10449886 | None:intergenic | 20.0% |
| !! | TATATAACTTTACTATTTGG+AGG | + | chr7_2:10450484-10450503 | None:intergenic | 20.0% |
| !! | TTAATTTCATATGCAAAGTA+CGG | - | chr7_2:10450850-10450869 | Msa1048680:intron | 20.0% |
| !! | AGAAACTATTAATTCATCAT+TGG | + | chr7_2:10451066-10451085 | None:intergenic | 20.0% |
| ! | TGATATATGGTATGCAAAAA+TGG | + | chr7_2:10448041-10448060 | None:intergenic | 25.0% |
| !! | AAGCTATATATATAGTGGAA+GGG | + | chr7_2:10448097-10448116 | None:intergenic | 25.0% |
| ! | TTAAGCTAAATTAGTGCAAT+GGG | + | chr7_2:10448207-10448226 | None:intergenic | 25.0% |
| ! | ATTAAGCTAAATTAGTGCAA+TGG | + | chr7_2:10448208-10448227 | None:intergenic | 25.0% |
| !! | GCACTAATTTAGCTTAATTA+AGG | - | chr7_2:10448210-10448229 | Msa1048680:exon | 25.0% |
| ! | ATAGATACACACTATTCATA+AGG | - | chr7_2:10448386-10448405 | Msa1048680:intron | 25.0% |
| ! | TATAGCATATAAGATCTTGT+TGG | - | chr7_2:10448574-10448593 | Msa1048680:intron | 25.0% |
| !! | CATCAAGATAGTATCATTTT+AGG | + | chr7_2:10448762-10448781 | None:intergenic | 25.0% |
| ! | AGATATGACGTTATCTAATA+TGG | + | chr7_2:10448882-10448901 | None:intergenic | 25.0% |
| ! | TAATAACCAATGATAGTAAG+GGG | - | chr7_2:10449244-10449263 | Msa1048680:intron | 25.0% |
| ! | TCAAATTGTCTGAATTCAAA+CGG | - | chr7_2:10449316-10449335 | Msa1048680:intron | 25.0% |
| ! | AAATAAATAACCAATGAGAG+TGG | - | chr7_2:10449423-10449442 | Msa1048680:intron | 25.0% |
| ! | AAAACAAAAATGTCCCAAAT+AGG | + | chr7_2:10449514-10449533 | None:intergenic | 25.0% |
| ! | ATATAGCACATATCAAACTT+AGG | - | chr7_2:10449543-10449562 | Msa1048680:intron | 25.0% |
| !!! | CATTGGTTTATAAAGTTACA+AGG | - | chr7_2:10449590-10449609 | Msa1048680:intron | 25.0% |
| ! | GCAAGTAAATAACTAAAAAG+TGG | + | chr7_2:10449735-10449754 | None:intergenic | 25.0% |
| ! | TAAGCAATAGAGTAAGATAA+TGG | - | chr7_2:10450007-10450026 | Msa1048680:intron | 25.0% |
| ! | AAATTCTTCTTCAATACATG+GGG | + | chr7_2:10450174-10450193 | None:intergenic | 25.0% |
| ! | GAAATTCTTCTTCAATACAT+GGG | + | chr7_2:10450175-10450194 | None:intergenic | 25.0% |
| !!! | AGATTTTGGTATTGTACTTT+TGG | + | chr7_2:10450197-10450216 | None:intergenic | 25.0% |
| !! | AAAGTTATGGACATAGATTT+TGG | + | chr7_2:10450211-10450230 | None:intergenic | 25.0% |
| ! | ATCTATGTCCATAACTTTAA+AGG | - | chr7_2:10450213-10450232 | Msa1048680:intron | 25.0% |
| ! | TCTATGTCCATAACTTTAAA+GGG | - | chr7_2:10450214-10450233 | Msa1048680:intron | 25.0% |
| !!! | ATGTAAACCCTTTAAAGTTA+TGG | + | chr7_2:10450224-10450243 | None:intergenic | 25.0% |
| ! | TTTAAAGGGTTTACATTGAT+TGG | - | chr7_2:10450228-10450247 | Msa1048680:intron | 25.0% |
| !! | ATGCACTATGCATTTTTATT+TGG | + | chr7_2:10450746-10450765 | None:intergenic | 25.0% |
| !! | ATTGTTACCAACATGTTTTT+AGG | - | chr7_2:10450770-10450789 | Msa1048680:intron | 25.0% |
| !! | TAATTCATCATTGGTTAAGT+AGG | + | chr7_2:10451057-10451076 | None:intergenic | 25.0% |
| AGTAAAGTAGACAACAATGT+TGG | + | chr7_2:10447960-10447979 | None:intergenic | 30.0% | |
| !! | AAAGTGTTGAAAGAGGTATA+AGG | + | chr7_2:10448016-10448035 | None:intergenic | 30.0% |
| GAGGTGTAAGATATGATATA+TGG | + | chr7_2:10448054-10448073 | None:intergenic | 30.0% | |
| ! | AGCTATATATATAGTGGAAG+GGG | + | chr7_2:10448096-10448115 | None:intergenic | 30.0% |
| ! | CAAGCTATATATATAGTGGA+AGG | + | chr7_2:10448098-10448117 | None:intergenic | 30.0% |
| GACACAAGCTATATATATAG+TGG | + | chr7_2:10448102-10448121 | None:intergenic | 30.0% | |
| ACACACTATTCATAAGGATA+AGG | - | chr7_2:10448392-10448411 | Msa1048680:intron | 30.0% | |
| TCAACTAGGTCACTTAATAT+GGG | - | chr7_2:10448703-10448722 | Msa1048680:intron | 30.0% | |
| AAATGTCTCGTAAATAGGAT+CGG | + | chr7_2:10448917-10448936 | None:intergenic | 30.0% | |
| TCAACAAAAGCTAATGTATC+TGG | + | chr7_2:10448979-10448998 | None:intergenic | 30.0% | |
| CTTGAAAATTATACTACCTC+CGG | + | chr7_2:10449026-10449045 | None:intergenic | 30.0% | |
| ATTTAGTGTATGCTTGCATA+TGG | - | chr7_2:10449080-10449099 | Msa1048680:intron | 30.0% | |
| ! | TTTTAGCAAAGCTATACCTT+AGG | - | chr7_2:10449699-10449718 | Msa1048680:intron | 30.0% |
| TTTAGCAAAGCTATACCTTA+GGG | - | chr7_2:10449700-10449719 | Msa1048680:intron | 30.0% | |
| ACCTTCTAACAAAAACAAGT+GGG | + | chr7_2:10449826-10449845 | None:intergenic | 30.0% | |
| GGAAATTCTTCTTCAATACA+TGG | + | chr7_2:10450176-10450195 | None:intergenic | 30.0% | |
| GAGGTAGTACGTTAATAATA+AGG | - | chr7_2:10450687-10450706 | Msa1048680:intron | 30.0% | |
| !! | TGTTAATTTTGACCAACTCA+TGG | - | chr7_2:10450717-10450736 | Msa1048680:intron | 30.0% |
| TAAGTTTCTGATATAGTTGC+AGG | + | chr7_2:10450945-10450964 | None:intergenic | 30.0% | |
| TATCAGAAACTTACAAAGTG+AGG | - | chr7_2:10450952-10450971 | Msa1048680:CDS | 30.0% | |
| ! | TAATATGTGCCTCTTTTTGA+AGG | - | chr7_2:10451162-10451181 | Msa1048680:five_prime_UTR | 30.0% |
| ! | TCAAACAAGTGCTACATTTT+TGG | + | chr7_2:10451188-10451207 | None:intergenic | 30.0% |
| ! | TTATATGTGCCTCTTTTTGA+AGG | - | chr7_2:10451225-10451244 | Msa1048680:five_prime_UTR | 30.0% |
| ! | TCAAACAAGTGCTACATTTT+TGG | + | chr7_2:10451188-10451207 | None:intergenic | 30.0% |
| !! | AATTAGCTTTGGAAAAGGAG+TGG | + | chr7_2:10447916-10447935 | None:intergenic | 35.0% |
| ! | ACTCCTTTTCCAAAGCTAAT+TGG | - | chr7_2:10447915-10447934 | Msa1048680:three_prime_UTR | 35.0% |
| ! | AACATTTGGCCAATTAGCTT+TGG | + | chr7_2:10447927-10447946 | None:intergenic | 35.0% |
| TTGGAAGGGAAGAAAACATT+TGG | + | chr7_2:10447941-10447960 | None:intergenic | 35.0% | |
| AGTAGACAACAATGTTGGAA+GGG | + | chr7_2:10447955-10447974 | None:intergenic | 35.0% | |
| AAGTAGACAACAATGTTGGA+AGG | + | chr7_2:10447956-10447975 | None:intergenic | 35.0% | |
| TTACTGTACTCTCTCTATTG+TGG | - | chr7_2:10447975-10447994 | Msa1048680:three_prime_UTR | 35.0% | |
| ! | AAGAGGTATAAGGAAGGAAA+AGG | + | chr7_2:10448006-10448025 | None:intergenic | 35.0% |
| ! | TGTTGAAAGAGGTATAAGGA+AGG | + | chr7_2:10448012-10448031 | None:intergenic | 35.0% |
| !! | AATGGAGAAAGTGTTGAAAG+AGG | + | chr7_2:10448023-10448042 | None:intergenic | 35.0% |
| AATGGAAGGAGTAGATAAAG+AGG | + | chr7_2:10448073-10448092 | None:intergenic | 35.0% | |
| ! | TATATATAGTGGAAGGGGAA+TGG | + | chr7_2:10448091-10448110 | None:intergenic | 35.0% |
| TTAAGGATATGTCTAGTCGA+AGG | - | chr7_2:10448227-10448246 | Msa1048680:exon | 35.0% | |
| ! | GACGGAGTGAGTATTATTTT+AGG | + | chr7_2:10448469-10448488 | None:intergenic | 35.0% |
| ! | TTAGGTCATTTAAAACGGGA+CGG | + | chr7_2:10448487-10448506 | None:intergenic | 35.0% |
| GTCAACTAGGTCACTTAATA+TGG | - | chr7_2:10448702-10448721 | Msa1048680:intron | 35.0% | |
| CTAATATGGATCTGACCTAA+CGG | + | chr7_2:10448868-10448887 | None:intergenic | 35.0% | |
| GACTGAAATGTCTCGTAAAT+AGG | + | chr7_2:10448922-10448941 | None:intergenic | 35.0% | |
| TTTCTTATAAATAGGACCGG+AGG | - | chr7_2:10449007-10449026 | Msa1048680:intron | 35.0% | |
| ! | CGGAGGTAGTATAATTTTCA+AGG | - | chr7_2:10449024-10449043 | Msa1048680:intron | 35.0% |
| ATATGGTTAACCAAATGTCG+CGG | - | chr7_2:10449097-10449116 | Msa1048680:intron | 35.0% | |
| AATTGTCTGAATTCAAACGG+TGG | - | chr7_2:10449319-10449338 | Msa1048680:intron | 35.0% | |
| TATCAAACTTAGGCTGAAGT+TGG | - | chr7_2:10449553-10449572 | Msa1048680:intron | 35.0% | |
| AAGTGGTTAAATACACCCTA+AGG | + | chr7_2:10449718-10449737 | None:intergenic | 35.0% | |
| AAATCCTATAGGCATTTGCT+AGG | + | chr7_2:10449792-10449811 | None:intergenic | 35.0% | |
| TGTGTTCTAGCAAATCCTAT+AGG | + | chr7_2:10449803-10449822 | None:intergenic | 35.0% | |
| !!! | ACCCACTTGTTTTTGTTAGA+AGG | - | chr7_2:10449822-10449841 | Msa1048680:intron | 35.0% |
| CACCTTCTAACAAAAACAAG+TGG | + | chr7_2:10449827-10449846 | None:intergenic | 35.0% | |
| TTATAGCAGCATACACCTTA+AGG | - | chr7_2:10449849-10449868 | Msa1048680:intron | 35.0% | |
| ACTCCCACATAAAAACTAGT+GGG | - | chr7_2:10449909-10449928 | Msa1048680:intron | 35.0% | |
| !!! | ACACCCACTAGTTTTTATGT+GGG | + | chr7_2:10449915-10449934 | None:intergenic | 35.0% |
| TTCAGGACGGTTTATATGTA+AGG | + | chr7_2:10450377-10450396 | None:intergenic | 35.0% | |
| GACAAGAATAAAGTTCAGGA+CGG | + | chr7_2:10450390-10450409 | None:intergenic | 35.0% | |
| AAGGGACAAGAATAAAGTTC+AGG | + | chr7_2:10450394-10450413 | None:intergenic | 35.0% | |
| AAATCATCGTTATTGACGTC+AGG | - | chr7_2:10450559-10450578 | Msa1048680:intron | 35.0% | |
| !! | AAAGACTTGGATTAGTCTGA+TGG | + | chr7_2:10450639-10450658 | None:intergenic | 35.0% |
| ATCTCGACGAAAAAAAGACT+TGG | + | chr7_2:10450652-10450671 | None:intergenic | 35.0% | |
| TTCGTCGAGATTCAATACAT+AGG | - | chr7_2:10450661-10450680 | Msa1048680:intron | 35.0% | |
| TCGTCGAGATTCAATACATA+GGG | - | chr7_2:10450662-10450681 | Msa1048680:intron | 35.0% | |
| ! | TTTATTTGGAGTCCATGAGT+TGG | + | chr7_2:10450732-10450751 | None:intergenic | 35.0% |
| ATGGTCACCTAAAAACATGT+TGG | + | chr7_2:10450780-10450799 | None:intergenic | 35.0% | |
| GCAAGAGTTTGAAAATGTGA+GGG | + | chr7_2:10450817-10450836 | None:intergenic | 35.0% | |
| AGCAAGAGTTTGAAAATGTG+AGG | + | chr7_2:10450818-10450837 | None:intergenic | 35.0% | |
| TATAGTTGCAGGTTTCTTGT+AGG | + | chr7_2:10450934-10450953 | None:intergenic | 35.0% | |
| AGCACTATCAGAATCAATTG+TGG | + | chr7_2:10451014-10451033 | None:intergenic | 35.0% | |
| !!! | CATTTTTGGCCTTCAAAAAG+AGG | + | chr7_2:10451174-10451193 | None:intergenic | 35.0% |
| !!! | CATTTTTGGCCTTCAAAAAG+AGG | + | chr7_2:10451174-10451193 | None:intergenic | 35.0% |
| GATAGTGTAATGACTTCAGT+TGG | - | chr7_2:10451294-10451313 | Msa1048680:five_prime_UTR | 35.0% | |
| TAATGACTTCAGTTGGATAG+AGG | - | chr7_2:10451301-10451320 | Msa1048680:five_prime_UTR | 35.0% | |
| !! | TGGCCAATTAGCTTTGGAAA+AGG | + | chr7_2:10447921-10447940 | None:intergenic | 40.0% |
| GGTATAAGGAAGGAAAAGGA+TGG | + | chr7_2:10448002-10448021 | None:intergenic | 40.0% | |
| ATATGTCTAGTCGAAGGTCA+AGG | - | chr7_2:10448233-10448252 | Msa1048680:CDS | 40.0% | |
| TGCAAACAAGGTCGATGATT+TGG | + | chr7_2:10448294-10448313 | None:intergenic | 40.0% | |
| GTTGACGCAATTTGCAAACA+AGG | + | chr7_2:10448306-10448325 | None:intergenic | 40.0% | |
| TTGTTCCTGAGATTCGTAAC+AGG | - | chr7_2:10448326-10448345 | Msa1048680:CDS | 40.0% | |
| CATACGTGACATAGTCAACT+AGG | - | chr7_2:10448689-10448708 | Msa1048680:intron | 40.0% | |
| CTAGGTCACTTAATATGGGA+CGG | - | chr7_2:10448707-10448726 | Msa1048680:intron | 40.0% | |
| GGGAATACTATCTTGATGTG+TGG | - | chr7_2:10448731-10448750 | Msa1048680:intron | 40.0% | |
| AAATATGACCGTTCACCGTT+AGG | - | chr7_2:10448850-10448869 | Msa1048680:intron | 40.0% | |
| TTTCATACATCCGCGACATT+TGG | + | chr7_2:10449110-10449129 | None:intergenic | 40.0% | |
| TTACTTGGATGGTTTCATGC+AGG | - | chr7_2:10449165-10449184 | Msa1048680:intron | 40.0% | |
| TAACCAATGATAGTAAGGGG+TGG | - | chr7_2:10449247-10449266 | Msa1048680:intron | 40.0% | |
| TATCCACCCCTTACTATCAT+TGG | + | chr7_2:10449253-10449272 | None:intergenic | 40.0% | |
| AAGGGGTGGATATCTCAATT+TGG | - | chr7_2:10449261-10449280 | Msa1048680:intron | 40.0% | |
| ACAATGTTGACCACTCTCAT+TGG | + | chr7_2:10449436-10449455 | None:intergenic | 40.0% | |
| ! | AAACTTAGGCTGAAGTTGGT+TGG | - | chr7_2:10449557-10449576 | Msa1048680:intron | 40.0% |
| ! | AACTTAGGCTGAAGTTGGTT+GGG | - | chr7_2:10449558-10449577 | Msa1048680:intron | 40.0% |
| CATGACCTAGTTTCTTCAAG+AGG | + | chr7_2:10449619-10449638 | None:intergenic | 40.0% | |
| GTATCCTAGCAAATGCCTAT+AGG | - | chr7_2:10449785-10449804 | Msa1048680:intron | 40.0% | |
| CACTCCCACATAAAAACTAG+TGG | - | chr7_2:10449908-10449927 | Msa1048680:intron | 40.0% | |
| !!! | CACACCCACTAGTTTTTATG+TGG | + | chr7_2:10449916-10449935 | None:intergenic | 40.0% |
| TCGAGATTCAATACATAGGG+AGG | - | chr7_2:10450665-10450684 | Msa1048680:intron | 40.0% | |
| AGATTCAATACATAGGGAGG+AGG | - | chr7_2:10450668-10450687 | Msa1048680:intron | 40.0% | |
| GAGGGAAAAAACATCACACA+TGG | + | chr7_2:10450799-10450818 | None:intergenic | 40.0% | |
| TGCATCCACTATGTCAGTAT+CGG | + | chr7_2:10450889-10450908 | None:intergenic | 40.0% | |
| CCAACAACTGAGACAATCTT+AGG | + | chr7_2:10450991-10451010 | None:intergenic | 40.0% | |
| CCTAAGATTGTCTCAGTTGT+TGG | - | chr7_2:10450988-10451007 | Msa1048680:CDS | 40.0% | |
| GTGCTGAAGCTTCAATCATT+AGG | - | chr7_2:10451029-10451048 | Msa1048680:CDS | 40.0% | |
| ! | CTTTGGAAAAGGAGTGGACT+AGG | + | chr7_2:10447910-10447929 | None:intergenic | 45.0% |
| ! | TATAGTGGAAGGGGAATGGA+AGG | + | chr7_2:10448087-10448106 | None:intergenic | 45.0% |
| AACAATCAGGAGGGTCTACT+CGG | - | chr7_2:10448257-10448276 | Msa1048680:CDS | 45.0% | |
| GTCACTTAATATGGGACGGA+GGG | - | chr7_2:10448711-10448730 | Msa1048680:intron | 45.0% | |
| GTCTCGTAAATAGGATCGGA+GGG | + | chr7_2:10448913-10448932 | None:intergenic | 45.0% | |
| TGTCTCGTAAATAGGATCGG+AGG | + | chr7_2:10448914-10448933 | None:intergenic | 45.0% | |
| CTGAATTCAAACGGTGGTGA+AGG | - | chr7_2:10449325-10449344 | Msa1048680:intron | 45.0% | |
| GGACACCTCTTGAAGAAACT+AGG | - | chr7_2:10449611-10449630 | Msa1048680:intron | 45.0% | |
| GATGAAGAAGCAGCATGCAT+TGG | + | chr7_2:10450355-10450374 | None:intergenic | 45.0% | |
| ATGCAAAGTACGGCATGTGT+AGG | - | chr7_2:10450860-10450879 | Msa1048680:intron | 45.0% | |
| GGTAACCGATACTGACATAG+TGG | - | chr7_2:10450881-10450900 | Msa1048680:intron | 45.0% | |
| TCTTGTAGGACCTTAGAAGC+TGG | + | chr7_2:10450920-10450939 | None:intergenic | 45.0% | |
| !!! | TTAATATAAATATCTTTTAT+GGG | + | chr7_2:10449142-10449161 | None:intergenic | 5.0% |
| !! | ATGTATATATATATATATAT+AGG | - | chr7_2:10449636-10449655 | Msa1048680:intron | 5.0% |
| !! | TGTATATATATATATATATA+GGG | - | chr7_2:10449637-10449656 | Msa1048680:intron | 5.0% |
| !! | ATGTATATATATATATATAT+GGG | + | chr7_2:10449636-10449655 | None:intergenic | 5.0% |
| !! | TATGTATATATATATATATA+TGG | + | chr7_2:10449951-10449970 | None:intergenic | 5.0% |
| CGAAGGTCAAGGCAACAATC+AGG | - | chr7_2:10448244-10448263 | Msa1048680:CDS | 50.0% | |
| AGGTCAAGGCAACAATCAGG+AGG | - | chr7_2:10448247-10448266 | Msa1048680:CDS | 50.0% | |
| GGTCAAGGCAACAATCAGGA+GGG | - | chr7_2:10448248-10448267 | Msa1048680:CDS | 50.0% | |
| GGTCACTTAATATGGGACGG+AGG | - | chr7_2:10448710-10448729 | Msa1048680:intron | 50.0% | |
| GGATCTGACCTAACGGTGAA+CGG | + | chr7_2:10448861-10448880 | None:intergenic | 50.0% | |
| ! | CTGAAGTTGGTTGGGTGACT+AGG | - | chr7_2:10449566-10449585 | Msa1048680:intron | 50.0% |
| TGGTTGGGTGACTAGGTCAT+TGG | - | chr7_2:10449573-10449592 | Msa1048680:intron | 50.0% | |
| TCTTACGAGTCTCTGCAGCA+TGG | + | chr7_2:10450062-10450081 | None:intergenic | 50.0% | |
| !! | CTGACATAGTGGATGCATGC+AGG | - | chr7_2:10450892-10450911 | Msa1048680:intron | 50.0% |
| CATGCAGGTACCAGCTTCTA+AGG | - | chr7_2:10450907-10450926 | Msa1048680:intron | 50.0% | |
| GAGCGCCTGTTACGAATCTC+AGG | + | chr7_2:10448334-10448353 | None:intergenic | 55.0% | |
| TCGTAACAGGCGCTCTGACA+AGG | - | chr7_2:10448339-10448358 | Msa1048680:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 10447901 | 10451396 | 10447901 | ID=Msa1048680;Name=Msa1048680 |
| chr7_2 | mRNA | 10447901 | 10451396 | 10447901 | ID=Msa1048680-mRNA-1;Parent=Msa1048680;Name=Msa1048680-mRNA-1;_AED=0.01;_eAED=0.01;_QI=334|1|1|1|1|1|2|327|93 |
| chr7_2 | exon | 10447901 | 10448383 | 10447901 | ID=Msa1048680-mRNA-1:exon:2761;Parent=Msa1048680-mRNA-1 |
| chr7_2 | exon | 10450937 | 10451396 | 10450937 | ID=Msa1048680-mRNA-1:exon:2760;Parent=Msa1048680-mRNA-1 |
| chr7_2 | five_prime_UTR | 10451063 | 10451396 | 10451063 | ID=Msa1048680-mRNA-1:five_prime_utr;Parent=Msa1048680-mRNA-1 |
| chr7_2 | CDS | 10450937 | 10451062 | 10450937 | ID=Msa1048680-mRNA-1:cds;Parent=Msa1048680-mRNA-1 |
| chr7_2 | CDS | 10448228 | 10448383 | 10448228 | ID=Msa1048680-mRNA-1:cds;Parent=Msa1048680-mRNA-1 |
| chr7_2 | three_prime_UTR | 10447901 | 10448227 | 10447901 | ID=Msa1048680-mRNA-1:three_prime_utr;Parent=Msa1048680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
