AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1006830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1006830 MtrunA17_Chr7g0217141 98.925 93 1 0 1 93 1 93 7.14e-60 177
Msa1006830 MtrunA17_Chr6g0453041 84.615 78 12 0 16 93 15 92 3.81e-40 127
Msa1006830 MtrunA17_Chr8g0362131 73.494 83 21 1 9 91 10 91 9.25e-34 111
Msa1006830 MtrunA17_Chr3g0093001 74.359 78 18 1 16 93 17 92 1.16e-32 108
Msa1006830 MtrunA17_Chr5g0416431 69.737 76 23 0 16 91 17 92 1.09e-31 106
Msa1006830 MtrunA17_Chr7g0237771 45.205 73 40 0 6 78 2 74 1.40e-11 55.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1006830 AT3G28857.1 72.826 92 23 2 1 91 1 91 2.42e-37 121
Msa1006830 AT1G26945.1 77.333 75 17 0 18 92 19 93 3.63e-34 113
Msa1006830 AT5G39860.1 71.250 80 22 1 13 91 12 91 2.57e-32 108
Msa1006830 AT3G47710.1 62.766 94 32 2 1 93 1 92 3.37e-31 105
Msa1006830 AT5G15160.1 69.737 76 22 1 18 92 18 93 4.58e-30 102
Msa1006830 AT1G74500.1 68.354 79 22 2 16 93 17 93 7.27e-29 99.8

Find 51 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCACTAATTTAGCTTAATTA+AGG 0.234688 7_1:-5699498 Msa1006830:five_prime_UTR
ATTCAATTGATTTGAAAGTT+TGG 0.293555 7_1:-5699854 Msa1006830:five_prime_UTR
TGCAAACAAGGTCGATGATT+TGG 0.301526 7_1:+5699417 None:intergenic
TAAGTTTCTGATATAGTTGC+AGG 0.316132 7_1:+5697327 None:intergenic
AACATTTGGCCAATTAGCTT+TGG 0.337798 7_1:+5699774 None:intergenic
CATGCAGGTACCAGCTTCTA+AGG 0.347667 7_1:-5697362 Msa1006830:intron
GAAGTGTAAGATATGATATA+TGG 0.371093 7_1:+5699657 None:intergenic
CCTAAGATTGTCTCAGTTGT+TGG 0.377561 7_1:-5697281 Msa1006830:CDS
TATAGTTGCAGGTTTCTTGT+AGG 0.377852 7_1:+5697338 None:intergenic
AGAAACTATTAATTCATCAT+TGG 0.386959 7_1:+5697206 None:intergenic
TAATTCATCATTGGTTAAGT+AGG 0.403741 7_1:+5697215 None:intergenic
TTAAGCTAAATTAGTGCAAT+GGG 0.405387 7_1:+5699504 None:intergenic
GTGCTGAAGCTTCAATCATT+AGG 0.419766 7_1:-5697240 Msa1006830:CDS
TTGGAAGGGAAGAAAACATT+TGG 0.426921 7_1:+5699760 None:intergenic
CTTTGGAAAAGGAGTGGACT+AGG 0.431847 7_1:+5699791 None:intergenic
TTGTTCCTGAGATTCGTAAC+AGG 0.433720 7_1:-5699382 Msa1006830:CDS
TAATGACTTCAGTTGGATAG+AGG 0.463225 7_1:-5697034 Msa1006830:three_prime_UTR
ATTAAGCTAAATTAGTGCAA+TGG 0.469279 7_1:+5699503 None:intergenic
TGGCCAATTAGCTTTGGAAA+AGG 0.486700 7_1:+5699780 None:intergenic
GACACAAGCTATATATATAG+TGG 0.488522 7_1:+5699609 None:intergenic
CGAAGGTCAAGGCAACAATC+AGG 0.491771 7_1:-5699464 Msa1006830:CDS
ATGGAGAAAGTGGTGAAAGA+GGG 0.503837 7_1:+5699689 None:intergenic
TATATATAGTGGAAGGGGAA+TGG 0.503862 7_1:+5699620 None:intergenic
GAGCGCCTGTTACGAATCTC+AGG 0.511807 7_1:+5699377 None:intergenic
CCAACAACTGAGACAATCTT+AGG 0.515600 7_1:+5697281 None:intergenic
AATGGAGAAAGTGGTGAAAG+AGG 0.524043 7_1:+5699688 None:intergenic
TCTTGTAGGACCTTAGAAGC+TGG 0.539736 7_1:+5697352 None:intergenic
TTACTGTACTCTCTCTATTG+TGG 0.542121 7_1:-5699723 Msa1006830:five_prime_UTR
AACAATCAGGAGGGTCTACT+CGG 0.547851 7_1:-5699451 Msa1006830:CDS
CTCCCTAAAATTCACACCTA+GGG 0.548766 7_1:-5699818 Msa1006830:five_prime_UTR
AGCTATATATATAGTGGAAG+GGG 0.549770 7_1:+5699615 None:intergenic
TATAGTGGAAGGGGAATGGA+AGG 0.551095 7_1:+5699624 None:intergenic
CAAGCTATATATATAGTGGA+AGG 0.558395 7_1:+5699613 None:intergenic
AGTAAAGTAGACAACAATGT+TGG 0.560866 7_1:+5699741 None:intergenic
CCTCCCTAAAATTCACACCT+AGG 0.566541 7_1:-5699819 Msa1006830:five_prime_UTR
AAGCTATATATATAGTGGAA+GGG 0.569743 7_1:+5699614 None:intergenic
AAGTAGACAACAATGTTGGA+AGG 0.575963 7_1:+5699745 None:intergenic
GATAGTGTAATGACTTCAGT+TGG 0.579731 7_1:-5697041 Msa1006830:three_prime_UTR
AAAGTGGTGAAAGAGGGAAA+AGG 0.579850 7_1:+5699695 None:intergenic
GTTGACGCAATTTGCAAACA+AGG 0.588186 7_1:+5699405 None:intergenic
TCGTAACAGGCGCTCTGACA+AGG 0.592126 7_1:-5699369 Msa1006830:intron
GAGTGGACTAGGCTTTCCCT+AGG 0.592349 7_1:+5699802 None:intergenic
AATTAGCTTTGGAAAAGGAG+TGG 0.597808 7_1:+5699785 None:intergenic
AGTAGACAACAATGTTGGAA+GGG 0.605803 7_1:+5699746 None:intergenic
TATCAGAAACTTACAAAGTG+AGG 0.615011 7_1:-5697317 Msa1006830:CDS
ATATGTCTAGTCGAAGGTCA+AGG 0.620989 7_1:-5699475 Msa1006830:CDS
AGGTCAAGGCAACAATCAGG+AGG 0.632611 7_1:-5699461 Msa1006830:CDS
TTAAGGATATGTCTAGTCGA+AGG 0.649414 7_1:-5699481 Msa1006830:exon
TGGTGAAAGAGGGAAAAGGA+TGG 0.655140 7_1:+5699699 None:intergenic
AGCACTATCAGAATCAATTG+TGG 0.660250 7_1:+5697258 None:intergenic
GGTCAAGGCAACAATCAGGA+GGG 0.687654 7_1:-5699460 Msa1006830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATAAGAAAATCTTTTAT+GGG + chr7_1:5697779-5697798 None:intergenic 10.0%
!!! TATAATAGTTTTTTTTTTGA+AGG + chr7_1:5697990-5698009 None:intergenic 10.0%
!! ATATATATATATTAGTTCAT+AGG - chr7_1:5698135-5698154 Msa1006830:intron 10.0%
!! TATATATATGTATATGTATA+TGG + chr7_1:5698354-5698373 None:intergenic 10.0%
!! TTAAAATGTCTTAAAAAAAA+GGG + chr7_1:5698884-5698903 None:intergenic 10.0%
!!! TTTAAAATGTCTTAAAAAAA+AGG + chr7_1:5698885-5698904 None:intergenic 10.0%
!!! ATAATTATTTTAGTATTTAG+AGG + chr7_1:5698943-5698962 None:intergenic 10.0%
!!! TACTTCAAATATTTTGAATT+AGG + chr7_1:5697491-5697510 None:intergenic 15.0%
!!! ATCAAGATAGTATTATTTTA+GGG + chr7_1:5697519-5697538 None:intergenic 15.0%
!!! CTTAATAAGAAAATCTTTTA+TGG + chr7_1:5697780-5697799 None:intergenic 15.0%
!!! CATTGGTTATTTATTTATTT+TGG + chr7_1:5698025-5698044 None:intergenic 15.0%
!! AACATAAAATAACACTTATT+TGG - chr7_1:5698188-5698207 Msa1006830:intron 15.0%
!! ACATAAAATAACACTTATTT+GGG - chr7_1:5698189-5698208 Msa1006830:intron 15.0%
!!! CATATATATCTTCATTTTTA+AGG + chr7_1:5698778-5698797 None:intergenic 15.0%
!! TTCTATATAACTTTACTATT+TGG + chr7_1:5698971-5698990 None:intergenic 15.0%
!! ATATGAAATTAATTAAAGTG+TGG + chr7_1:5699332-5699351 None:intergenic 15.0%
!!! TTTGTTTTTGAGTTTAATTT+TGG - chr7_1:5699798-5699817 Msa1006830:five_prime_UTR 15.0%
!!! ATTCAATTGATTTGAAAGTT+TGG - chr7_1:5696905-5696924 Msa1006830:three_prime_UTR 20.0%
!!! CATCAAGATAGTATTATTTT+AGG + chr7_1:5697520-5697539 None:intergenic 20.0%
!!! AAAACTTGCTAAAAATAGAA+TGG - chr7_1:5697601-5697620 Msa1006830:intron 20.0%
!! ATTAATAACCAATGATAGTA+AGG - chr7_1:5697879-5697898 Msa1006830:intron 20.0%
!! TTAATAACCAATGATAGTAA+GGG - chr7_1:5697880-5697899 Msa1006830:intron 20.0%
!! AAATAAATAACCAATGAGAA+TGG - chr7_1:5698029-5698048 Msa1006830:intron 20.0%
!!! CATTGGTTTATAAAGTTATA+AGG - chr7_1:5698281-5698300 Msa1006830:intron 20.0%
!! TATATAACTTTACTATTTGG+AGG + chr7_1:5698968-5698987 None:intergenic 20.0%
!! CGATAATAATAAAGATCAAA+TGG - chr7_1:5699186-5699205 Msa1006830:intron 20.0%
!! TTAATTTCATATGCAAAGTA+CGG - chr7_1:5699340-5699359 Msa1006830:intron 20.0%
!! AGAAACTATTAATTCATCAT+TGG + chr7_1:5699556-5699575 None:intergenic 20.0%
! TGATATATGGTATGCAAAAA+TGG + chr7_1:5697092-5697111 None:intergenic 25.0%
! GAAGTGTAAGATATGATATA+TGG + chr7_1:5697105-5697124 None:intergenic 25.0%
!! AAGCTATATATATAGTGGAA+GGG + chr7_1:5697148-5697167 None:intergenic 25.0%
! TTAAGCTAAATTAGTGCAAT+GGG + chr7_1:5697258-5697277 None:intergenic 25.0%
! ATTAAGCTAAATTAGTGCAA+TGG + chr7_1:5697259-5697278 None:intergenic 25.0%
!! GCACTAATTTAGCTTAATTA+AGG - chr7_1:5697261-5697280 Msa1006830:CDS 25.0%
! ATAGATACACACTATTCATA+AGG - chr7_1:5697437-5697456 Msa1006830:intron 25.0%
! CGATATCTCATTATCTAATA+TGG + chr7_1:5697645-5697664 None:intergenic 25.0%
! TAATAACCAATGATAGTAAG+GGG - chr7_1:5697881-5697900 Msa1006830:intron 25.0%
!! TGATATGTGCTGTATTTTAT+TGG + chr7_1:5698229-5698248 None:intergenic 25.0%
! TAAGCAATAGAGTAAGATAA+TGG - chr7_1:5698452-5698471 Msa1006830:intron 25.0%
!!! AATGGTATGAATCTTTTTTG+AGG - chr7_1:5698470-5698489 Msa1006830:intron 25.0%
!!! GAATCTTTTTTGAGGAATAA+TGG - chr7_1:5698478-5698497 Msa1006830:intron 25.0%
! AATTTCTTCTTCAATACATG+GGG + chr7_1:5698646-5698665 None:intergenic 25.0%
! GAATTTCTTCTTCAATACAT+GGG + chr7_1:5698647-5698666 None:intergenic 25.0%
!!! AGATTTTGGTATTGTACTTT+TGG + chr7_1:5698669-5698688 None:intergenic 25.0%
!! AAAGTTATGGACATAGATTT+TGG + chr7_1:5698683-5698702 None:intergenic 25.0%
! ATCTATGTCCATAACTTTAA+AGG - chr7_1:5698685-5698704 Msa1006830:intron 25.0%
! TCTATGTCCATAACTTTAAA+GGG - chr7_1:5698686-5698705 Msa1006830:intron 25.0%
!!! ATGTAAACCCTTTAAAGTTA+TGG + chr7_1:5698696-5698715 None:intergenic 25.0%
! TTTAAAGGGTTTACATTGAT+TGG - chr7_1:5698700-5698719 Msa1006830:intron 25.0%
!!! TAGTCTTGTGATATTTACTT+GGG + chr7_1:5699120-5699139 None:intergenic 25.0%
!!! TTAGTCTTGTGATATTTACT+TGG + chr7_1:5699121-5699140 None:intergenic 25.0%
!! ATGCACTATGCATTTTTATT+TGG + chr7_1:5699236-5699255 None:intergenic 25.0%
!! ATTGTTACCAACATGTTTTT+AGG - chr7_1:5699260-5699279 Msa1006830:intron 25.0%
!! TAATTCATCATTGGTTAAGT+AGG + chr7_1:5699547-5699566 None:intergenic 25.0%
AGTAAAGTAGACAACAATGT+TGG + chr7_1:5697021-5697040 None:intergenic 30.0%
! AGCTATATATATAGTGGAAG+GGG + chr7_1:5697147-5697166 None:intergenic 30.0%
! CAAGCTATATATATAGTGGA+AGG + chr7_1:5697149-5697168 None:intergenic 30.0%
GACACAAGCTATATATATAG+TGG + chr7_1:5697153-5697172 None:intergenic 30.0%
ACACACTATTCATAAGGATA+AGG - chr7_1:5697443-5697462 Msa1006830:intron 30.0%
TAAACCATATGGTCTATAGA+TGG - chr7_1:5697561-5697580 Msa1006830:intron 30.0%
AAATCCATCTATAGACCATA+TGG + chr7_1:5697568-5697587 None:intergenic 30.0%
ATTTAGTGTATGCTTGCATA+TGG - chr7_1:5697717-5697736 Msa1006830:intron 30.0%
ATATGGTTAACCAAATGTTG+CGG - chr7_1:5697734-5697753 Msa1006830:intron 30.0%
ATACAGCACATATCAAACTT+AGG - chr7_1:5698234-5698253 Msa1006830:intron 30.0%
GGAATTTCTTCTTCAATACA+TGG + chr7_1:5698648-5698667 None:intergenic 30.0%
TCAATTTCGATGGTTTAGTT+TGG + chr7_1:5699047-5699066 None:intergenic 30.0%
TCTCGACGAAAAAAAAAACT+TGG + chr7_1:5699145-5699164 None:intergenic 30.0%
!!! TTTTTTCGTCGAGATTCAAT+AGG - chr7_1:5699151-5699170 Msa1006830:intron 30.0%
! TTTTTCGTCGAGATTCAATA+GGG - chr7_1:5699152-5699171 Msa1006830:intron 30.0%
TAAGTTTCTGATATAGTTGC+AGG + chr7_1:5699435-5699454 None:intergenic 30.0%
TATCAGAAACTTACAAAGTG+AGG - chr7_1:5699442-5699461 Msa1006830:CDS 30.0%
! TAATATGTGCCTCTTTTTGA+AGG - chr7_1:5699649-5699668 Msa1006830:five_prime_UTR 30.0%
! TCAAACAAGTGCTACATTTT+TGG + chr7_1:5699675-5699694 None:intergenic 30.0%
! TTCCCTAGGTGTGAATTTTA+GGG + chr7_1:5696946-5696965 None:intergenic 35.0%
! TTTCCCTAGGTGTGAATTTT+AGG + chr7_1:5696947-5696966 None:intergenic 35.0%
!! AATTAGCTTTGGAAAAGGAG+TGG + chr7_1:5696977-5696996 None:intergenic 35.0%
! ACTCCTTTTCCAAAGCTAAT+TGG - chr7_1:5696976-5696995 Msa1006830:three_prime_UTR 35.0%
! AACATTTGGCCAATTAGCTT+TGG + chr7_1:5696988-5697007 None:intergenic 35.0%
TTGGAAGGGAAGAAAACATT+TGG + chr7_1:5697002-5697021 None:intergenic 35.0%
AGTAGACAACAATGTTGGAA+GGG + chr7_1:5697016-5697035 None:intergenic 35.0%
AAGTAGACAACAATGTTGGA+AGG + chr7_1:5697017-5697036 None:intergenic 35.0%
TTACTGTACTCTCTCTATTG+TGG - chr7_1:5697036-5697055 Msa1006830:three_prime_UTR 35.0%
GTATGCAAAAATGGAGAAAG+TGG + chr7_1:5697083-5697102 None:intergenic 35.0%
! TATATATAGTGGAAGGGGAA+TGG + chr7_1:5697142-5697161 None:intergenic 35.0%
TTAAGGATATGTCTAGTCGA+AGG - chr7_1:5697278-5697297 Msa1006830:CDS 35.0%
ACAAGAACCTCTAAACCATA+TGG - chr7_1:5697550-5697569 Msa1006830:intron 35.0%
CTATAGACCATATGGTTTAG+AGG + chr7_1:5697560-5697579 None:intergenic 35.0%
AAAATAGAATGGTTCACCGT+TGG - chr7_1:5697612-5697631 Msa1006830:intron 35.0%
CTAATATGGATCTGATCCAA+CGG + chr7_1:5697631-5697650 None:intergenic 35.0%
TTTCATACATCCGCAACATT+TGG + chr7_1:5697747-5697766 None:intergenic 35.0%
ACAATGTTGACCATTCTCAT+TGG + chr7_1:5698042-5698061 None:intergenic 35.0%
TATCAAACTTAGGCTGAAGT+TGG - chr7_1:5698244-5698263 Msa1006830:intron 35.0%
TATCACCTAGTTTCTTCAAG+AGG + chr7_1:5698310-5698329 None:intergenic 35.0%
TTCAAGACGGTTTATCTGTA+AGG + chr7_1:5698849-5698868 None:intergenic 35.0%
GACAAGAATGAAGTTCAAGA+CGG + chr7_1:5698862-5698881 None:intergenic 35.0%
! TTTATTTGGAGTCCATGAGT+CGG + chr7_1:5699222-5699241 None:intergenic 35.0%
ATGGTCACCTAAAAACATGT+TGG + chr7_1:5699270-5699289 None:intergenic 35.0%
GAGAGAAAAAACATCACACA+TGG + chr7_1:5699289-5699308 None:intergenic 35.0%
TATAGTTGCAGGTTTCTTGT+AGG + chr7_1:5699424-5699443 None:intergenic 35.0%
AGCACTATCAGAATCAATTG+TGG + chr7_1:5699504-5699523 None:intergenic 35.0%
!!! CATTTTTGGCCTTCAAAAAG+AGG + chr7_1:5699661-5699680 None:intergenic 35.0%
GATAGTGTAATGACTTCAGT+TGG - chr7_1:5699718-5699737 Msa1006830:five_prime_UTR 35.0%
TAATGACTTCAGTTGGATAG+AGG - chr7_1:5699725-5699744 Msa1006830:five_prime_UTR 35.0%
CTCCCTAAAATTCACACCTA+GGG - chr7_1:5696941-5696960 Msa1006830:three_prime_UTR 40.0%
!! TGGCCAATTAGCTTTGGAAA+AGG + chr7_1:5696982-5697001 None:intergenic 40.0%
AAAGTGGTGAAAGAGGGAAA+AGG + chr7_1:5697067-5697086 None:intergenic 40.0%
ATGGAGAAAGTGGTGAAAGA+GGG + chr7_1:5697073-5697092 None:intergenic 40.0%
AATGGAGAAAGTGGTGAAAG+AGG + chr7_1:5697074-5697093 None:intergenic 40.0%
ATATGTCTAGTCGAAGGTCA+AGG - chr7_1:5697284-5697303 Msa1006830:CDS 40.0%
TGCAAACAAGGTCGATGATT+TGG + chr7_1:5697345-5697364 None:intergenic 40.0%
GTTGACGCAATTTGCAAACA+AGG + chr7_1:5697357-5697376 None:intergenic 40.0%
TTGTTCCTGAGATTCGTAAC+AGG - chr7_1:5697377-5697396 Msa1006830:intron 40.0%
TAACCAATGATAGTAAGGGG+TGG - chr7_1:5697884-5697903 Msa1006830:intron 40.0%
TATCCACCCCTTACTATCAT+TGG + chr7_1:5697890-5697909 None:intergenic 40.0%
AAGGGGTGGATATCTCAATT+TGG - chr7_1:5697898-5697917 Msa1006830:intron 40.0%
! AAACTTAGGCTGAAGTTGGT+TGG - chr7_1:5698248-5698267 Msa1006830:intron 40.0%
! AACTTAGGCTGAAGTTGGTT+GGG - chr7_1:5698249-5698268 Msa1006830:intron 40.0%
GATAAAGAAGCAGCATGCAT+TGG + chr7_1:5698827-5698846 None:intergenic 40.0%
AAACCATCGAAATTGACGTC+AGG - chr7_1:5699051-5699070 Msa1006830:intron 40.0%
GTGATATTTACTTGGGACGT+TGG + chr7_1:5699113-5699132 None:intergenic 40.0%
!! GGTTAATTTTGACCGACTCA+TGG - chr7_1:5699207-5699226 Msa1006830:intron 40.0%
TGCATCCACTATGTCAGTAT+CGG + chr7_1:5699379-5699398 None:intergenic 40.0%
CCAACAACTGAGACAATCTT+AGG + chr7_1:5699481-5699500 None:intergenic 40.0%
CCTAAGATTGTCTCAGTTGT+TGG - chr7_1:5699478-5699497 Msa1006830:exon 40.0%
GTGCTGAAGCTTCAATCATT+AGG - chr7_1:5699519-5699538 Msa1006830:five_prime_UTR 40.0%
!! CCTAGGTGTGAATTTTAGGG+AGG + chr7_1:5696943-5696962 None:intergenic 45.0%
CCTCCCTAAAATTCACACCT+AGG - chr7_1:5696940-5696959 Msa1006830:three_prime_UTR 45.0%
! CTTTGGAAAAGGAGTGGACT+AGG + chr7_1:5696971-5696990 None:intergenic 45.0%
TGGTGAAAGAGGGAAAAGGA+TGG + chr7_1:5697063-5697082 None:intergenic 45.0%
! TATAGTGGAAGGGGAATGGA+AGG + chr7_1:5697138-5697157 None:intergenic 45.0%
AACAATCAGGAGGGTCTACT+CGG - chr7_1:5697308-5697327 Msa1006830:CDS 45.0%
GGACACCTCTTGAAGAAACT+AGG - chr7_1:5698302-5698321 Msa1006830:intron 45.0%
CTACCTGACGTCAATTTCGA+TGG + chr7_1:5699057-5699076 None:intergenic 45.0%
TTCGTCGAGATTCAATAGGG+AGG - chr7_1:5699155-5699174 Msa1006830:intron 45.0%
ATGCAAAGTACGGCATGTGT+AGG - chr7_1:5699350-5699369 Msa1006830:intron 45.0%
GGTAACCGATACTGACATAG+TGG - chr7_1:5699371-5699390 Msa1006830:CDS 45.0%
TCTTGTAGGACCTTAGAAGC+TGG + chr7_1:5699410-5699429 None:intergenic 45.0%
CGAAGGTCAAGGCAACAATC+AGG - chr7_1:5697295-5697314 Msa1006830:CDS 50.0%
AGGTCAAGGCAACAATCAGG+AGG - chr7_1:5697298-5697317 Msa1006830:CDS 50.0%
GGTCAAGGCAACAATCAGGA+GGG - chr7_1:5697299-5697318 Msa1006830:CDS 50.0%
! CTGAAGTTGGTTGGGTGACT+AGG - chr7_1:5698257-5698276 Msa1006830:intron 50.0%
TGGTTGGGTGACTAGGTCAT+TGG - chr7_1:5698264-5698283 Msa1006830:intron 50.0%
GTCGAGATTCAATAGGGAGG+AGG - chr7_1:5699158-5699177 Msa1006830:intron 50.0%
!! CTGACATAGTGGATGCATGC+AGG - chr7_1:5699382-5699401 Msa1006830:CDS 50.0%
CATGCAGGTACCAGCTTCTA+AGG - chr7_1:5699397-5699416 Msa1006830:CDS 50.0%
!! GAGTGGACTAGGCTTTCCCT+AGG + chr7_1:5696960-5696979 None:intergenic 55.0%
GAGCGCCTGTTACGAATCTC+AGG + chr7_1:5697385-5697404 None:intergenic 55.0%
TCGTAACAGGCGCTCTGACA+AGG - chr7_1:5697390-5697409 Msa1006830:intron 55.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 5696895 5699886 5696895 ID=Msa1006830;Name=Msa1006830
chr7_1 mRNA 5696895 5699886 5696895 ID=Msa1006830-mRNA-1;Parent=Msa1006830;Name=Msa1006830-mRNA-1;_AED=0.01;_eAED=0.01;_QI=391|1|1|1|1|1|2|327|93
chr7_1 exon 5696895 5697377 5696895 ID=Msa1006830-mRNA-1:exon:1830;Parent=Msa1006830-mRNA-1
chr7_1 exon 5699370 5699886 5699370 ID=Msa1006830-mRNA-1:exon:1829;Parent=Msa1006830-mRNA-1
chr7_1 five_prime_UTR 5699496 5699886 5699496 ID=Msa1006830-mRNA-1:five_prime_utr;Parent=Msa1006830-mRNA-1
chr7_1 CDS 5699370 5699495 5699370 ID=Msa1006830-mRNA-1:cds;Parent=Msa1006830-mRNA-1
chr7_1 CDS 5697222 5697377 5697222 ID=Msa1006830-mRNA-1:cds;Parent=Msa1006830-mRNA-1
chr7_1 three_prime_UTR 5696895 5697221 5696895 ID=Msa1006830-mRNA-1:three_prime_utr;Parent=Msa1006830-mRNA-1
Gene Sequence

>Msa1006830

ATGTCTAGTCGAAGGTCAAGGCAACAATCAGGAGGGTCTACTCGGATTTCTGATGACCAAATCATCGACCTTGTTTGCAAATTGCGTCAACTTGTTCCTGAGATTCGTAACAGGCGCTCTGACAAGGTACCAGCTTCTAAGGTCCTACAAGAAACCTGCAACTATATCAGAAACTTACAAAGTGAGGTTGATGATTTAAGCCTAAGATTGTCTCAGTTGTTGGCCACAATTGATTCTGATAGTGCTGAAGCTTCAATCATTAGGAGCCTACTTAACCAATGA
Protein sequence

>Msa1006830

MSSRRSRQQSGGSTRISDDQIIDLVCKLRQLVPEIRNRRSDKVPASKVLQETCNYIRNLQSEVDDLSLRLSQLLATIDSDSAEASIIRSLLNQ*