AlfalfaGEDB | Msa1307560

M. sativa cultivar zhongmu-4 / Msa1307560

KEGG: K15280
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005793 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090481 GO:0098656 GO:1901264
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1307560	A0A072TLF6	98.286	175	3	0	1	175	1	175	1.06e-118	350

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa1307560	0.820181	7.856627e-53	-8.615850e-47
Msa0001960	Msa1307560	0.808729	2.684442e-50	-8.615850e-47
Msa0002580	Msa1307560	0.809329	1.997201e-50	-8.615850e-47
Msa0003400	Msa1307560	0.806439	8.223102e-50	-8.615850e-47
Msa0003890	Msa1307560	0.804090	2.552134e-49	-8.615850e-47
Msa0010110	Msa1307560	0.809736	1.633052e-50	-8.615850e-47
Msa0012930	Msa1307560	0.809870	1.528104e-50	-8.615850e-47
Msa0017390	Msa1307560	0.805250	1.461500e-49	-8.615850e-47
Msa0024000	Msa1307560	0.821128	4.759758e-53	-8.615850e-47
Msa0024400	Msa1307560	0.805778	1.132699e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1307560	MtrunA17_Chr8g0341861	98.286	175	3	0	1	175	1	175	5.07e-122	353

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Find 165 sgRNAs with CRISPR-Local

Find 458 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGGAGAACAATTTGG+TGG	0.607879	8_4:+3355495	Msa1307560:three_prime_UTR
AAAATTACACTGTAAATGTA+AGG	0.471890	8_4:-3355368	None:intergenic
AAAGTTAATTGATACCAATA+TGG	0.397508	8_4:-3357222	None:intergenic
AAGAAACAGAATTTGAAATT+TGG	0.144508	8_4:+3354715	Msa1307560:three_prime_UTR
AAGCAATGATTTCGAAGAAG+AGG	0.568201	8_4:+3358170	Msa1307560:three_prime_UTR
AATAATATAAGAAAATGAAA+AGG	0.542918	8_4:-3354822	None:intergenic
AATAATGCAGATCTTACACG+AGG	0.710389	8_4:-3355098	None:intergenic
AATAGCAGGGGTTGTTAAGG+AGG	0.572240	8_4:+3357193	Msa1307560:three_prime_UTR
AATGCATCTAAAATATTAAG+TGG	0.484373	8_4:-3358401	None:intergenic
AATGTTCAGTTAGCGATAGC+AGG	0.503802	8_4:-3355711	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAGGTCAAAAATAAACTGA+AGG	-	chr8_4:3351882-3351901	None:intergenic	30.0%
CATCACAAACAACACTAAAA+AGG	-	chr8_4:3352148-3352167	None:intergenic	30.0%
CAGGTATAATAAAAGTCTGT+TGG	+	chr8_4:3352212-3352231	Msa1307560:intron	30.0%
TATTCATTAAAAAGGGAGCT+GGG	-	chr8_4:3352257-3352276	None:intergenic	30.0%
GAGATAAAAACCACAGAAAA+CGG	-	chr8_4:3352762-3352781	None:intergenic	30.0%
AAGGAAAGGTAAATAAAGAG+GGG	-	chr8_4:3353121-3353140	None:intergenic	30.0%
ACACTGCAAAATAAAAGGAA+AGG	-	chr8_4:3353135-3353154	None:intergenic	30.0%
TGCATTGCTAGGATAATTTA+TGG	+	chr8_4:3353289-3353308	Msa1307560:intron	30.0%
GCATTGCTAGGATAATTTAT+GGG	+	chr8_4:3353290-3353309	Msa1307560:intron	30.0%
CTTTACAATGCAAGAAATTG+TGG	+	chr8_4:3353523-3353542	Msa1307560:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	3351347	3358613	3351347	ID=Msa1307560;Name=Msa1307560
chr8_4	mRNA	3351347	3358613	3351347	ID=Msa1307560-mRNA-1;Parent=Msa1307560;Name=Msa1307560-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0\|0.88\|0.9\|1\|0.77\|0.7\|10\|2292\|175
chr8_4	exon	3351347	3351873	3351347	ID=Msa1307560-mRNA-1:exon:963;Parent=Msa1307560-mRNA-1
chr8_4	exon	3352895	3353000	3352895	ID=Msa1307560-mRNA-1:exon:964;Parent=Msa1307560-mRNA-1
chr8_4	exon	3353152	3353201	3353152	ID=Msa1307560-mRNA-1:exon:965;Parent=Msa1307560-mRNA-1
chr8_4	exon	3353810	3353877	3353810	ID=Msa1307560-mRNA-1:exon:966;Parent=Msa1307560-mRNA-1
chr8_4	exon	3354709	3355819	3354709	ID=Msa1307560-mRNA-1:exon:967;Parent=Msa1307560-mRNA-1
chr8_4	exon	3356819	3357003	3356819	ID=Msa1307560-mRNA-1:exon:968;Parent=Msa1307560-mRNA-1
chr8_4	exon	3357143	3357229	3357143	ID=Msa1307560-mRNA-1:exon:969;Parent=Msa1307560-mRNA-1
chr8_4	exon	3357390	3357484	3357390	ID=Msa1307560-mRNA-1:exon:970;Parent=Msa1307560-mRNA-1
chr8_4	exon	3357610	3357752	3357610	ID=Msa1307560-mRNA-1:exon:971;Parent=Msa1307560-mRNA-1
chr8_4	exon	3358166	3358613	3358166	ID=Msa1307560-mRNA-1:exon:972;Parent=Msa1307560-mRNA-1
chr8_4	CDS	3351347	3351873	3351347	ID=Msa1307560-mRNA-1:cds;Parent=Msa1307560-mRNA-1
chr8_4	CDS	3352895	3352895	3352895	ID=Msa1307560-mRNA-1:cds;Parent=Msa1307560-mRNA-1
chr8_4	three_prime_UTR	3352896	3353000	3352896	ID=Msa1307560-mRNA-1:three_prime_utr;Parent=Msa1307560-mRNA-1
chr8_4	three_prime_UTR	3353152	3353201	3353152	ID=Msa1307560-mRNA-1:three_prime_utr;Parent=Msa1307560-mRNA-1
chr8_4	three_prime_UTR	3353810	3353877	3353810	ID=Msa1307560-mRNA-1:three_prime_utr;Parent=Msa1307560-mRNA-1
chr8_4	three_prime_UTR	3354709	3355819	3354709	ID=Msa1307560-mRNA-1:three_prime_utr;Parent=Msa1307560-mRNA-1
chr8_4	three_prime_UTR	3356819	3357003	3356819	ID=Msa1307560-mRNA-1:three_prime_utr;Parent=Msa1307560-mRNA-1
chr8_4	three_prime_UTR	3357143	3357229	3357143	ID=Msa1307560-mRNA-1:three_prime_utr;Parent=Msa1307560-mRNA-1
chr8_4	three_prime_UTR	3357390	3357484	3357390	ID=Msa1307560-mRNA-1:three_prime_utr;Parent=Msa1307560-mRNA-1
chr8_4	three_prime_UTR	3357610	3357752	3357610	ID=Msa1307560-mRNA-1:three_prime_utr;Parent=Msa1307560-mRNA-1
chr8_4	three_prime_UTR	3358166	3358613	3358166	ID=Msa1307560-mRNA-1:three_prime_utr;Parent=Msa1307560-mRNA-1

Gene Sequence

>Msa1307560

ATGGTACACATTGAATTAGATTCAGAGAGTTGTAGCTTTAAAGGGATTGCTATTGATGATTTTGATAGTGGAAGTTCAGGATCCGGTATTCGGAGAGAGCTTTCGTTTTCGCGTTGGTGTGACGACGATGATAATGATGGTGGTGATGGAAGGGTGATTTTGGATCAGAAATTAGGTGATGAGGATGTTATTGTAGAAGAAGACGCTGTTTTTGAGTTGCCTTTTGTTGAAAAGAATGAGGTGCAAGGAAGAGTTTTAGATAGGGAGAGATTTTCTTTTGATAAGTTTCGGAAGGAAAGGATCGTGCCGATGAATGGTGCTAGTACGATGGACGATGATTCTGTTTATAGGAGAGGTAATGGATCTGAGAAGTATGTGCCTTTTGATATTGAAGACAGTCCTGAAAGGGGAACAGTTGGTGGTGACTCGTATGATTCGGGGGGTGGTGTTGGATCACTGCATAAAAGCTCTGAAAATACTGTTCCTGTAGCAAATATCTTGAAGACTATGTTTTTCATATTTGTGTGA

Protein sequence

>Msa1307560

MVHIELDSESCSFKGIAIDDFDSGSSGSGIRRELSFSRWCDDDDNDGGDGRVILDQKLGDEDVIVEEDAVFELPFVEKNEVQGRVLDRERFSFDKFRKERIVPMNGASTMDDDSVYRRGNGSEKYVPFDIEDSPERGTVGGDSYDSGGGVGSLHKSSENTVPVANILKTMFFIFV*