Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1061190 | XP_013448876.1 | 97.010 | 301 | 9 | 0 | 1 | 301 | 1 | 301 | 0.0 | 612 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1061190 | sp|Q09893|YAI5_SCHPO | 39.535 | 129 | 74 | 3 | 18 | 143 | 8 | 135 | 7.25e-17 | 81.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1061190 | I3S857 | 97.010 | 301 | 9 | 0 | 1 | 301 | 1 | 301 | 0.0 | 612 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0434840 | Msa1061190 | 0.807080 | 6.018788e-50 | -8.615850e-47 |
| Msa0478750 | Msa1061190 | 0.806318 | 8.718375e-50 | -8.615850e-47 |
| Msa1022300 | Msa1061190 | 0.940758 | 1.348763e-100 | -8.615850e-47 |
| Msa1061190 | Msa1106570 | 0.959131 | 4.185108e-117 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1061190 | MtrunA17_Chr7g0238911 | 97.010 | 301 | 9 | 0 | 1 | 301 | 1 | 301 | 0.0 | 612 |
| Msa1061190 | MtrunA17_Chr4g0009921 | 84.158 | 303 | 39 | 4 | 1 | 301 | 1 | 296 | 0.0 | 503 |
| Msa1061190 | MtrunA17_Chr4g0009961 | 73.841 | 302 | 76 | 2 | 1 | 301 | 1 | 300 | 3.17e-163 | 456 |
| Msa1061190 | MtrunA17_Chr2g0328451 | 55.298 | 302 | 123 | 3 | 1 | 301 | 1 | 291 | 2.15e-113 | 329 |
| Msa1061190 | MtrunA17_Chr4g0031841 | 54.485 | 301 | 117 | 4 | 1 | 301 | 1 | 281 | 1.86e-112 | 326 |
| Msa1061190 | MtrunA17_Chr1g0193721 | 50.347 | 288 | 95 | 2 | 14 | 301 | 10 | 249 | 6.45e-99 | 291 |
| Msa1061190 | MtrunA17_Chr1g0205581 | 44.056 | 286 | 113 | 3 | 15 | 298 | 10 | 250 | 2.86e-78 | 239 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1061190 | AT5G02230.2 | 69.205 | 302 | 70 | 2 | 1 | 301 | 1 | 280 | 3.18e-144 | 407 |
| Msa1061190 | AT5G02230.1 | 69.205 | 302 | 70 | 2 | 1 | 301 | 1 | 280 | 3.18e-144 | 407 |
| Msa1061190 | AT5G02230.3 | 69.205 | 302 | 70 | 2 | 1 | 301 | 38 | 317 | 1.05e-143 | 407 |
| Msa1061190 | AT5G59480.4 | 56.187 | 299 | 110 | 2 | 1 | 297 | 1 | 280 | 1.50e-118 | 342 |
| Msa1061190 | AT5G59480.5 | 56.187 | 299 | 110 | 2 | 1 | 297 | 1 | 280 | 1.50e-118 | 342 |
| Msa1061190 | AT5G59480.3 | 56.187 | 299 | 110 | 2 | 1 | 297 | 1 | 280 | 1.50e-118 | 342 |
| Msa1061190 | AT5G59480.1 | 56.187 | 299 | 110 | 2 | 1 | 297 | 1 | 280 | 1.50e-118 | 342 |
| Msa1061190 | AT5G59480.2 | 56.187 | 299 | 109 | 3 | 1 | 297 | 1 | 279 | 1.72e-116 | 337 |
| Msa1061190 | AT5G59490.1 | 54.153 | 301 | 97 | 4 | 6 | 301 | 2 | 266 | 3.47e-103 | 303 |
| Msa1061190 | AT3G62040.1 | 53.165 | 237 | 63 | 3 | 45 | 280 | 1 | 190 | 5.70e-83 | 249 |
| Msa1061190 | AT2G32150.1 | 46.617 | 266 | 101 | 3 | 16 | 281 | 7 | 231 | 2.06e-82 | 249 |
| Msa1061190 | AT5G59490.2 | 55.061 | 247 | 75 | 3 | 6 | 252 | 2 | 212 | 7.20e-81 | 244 |
| Msa1061190 | AT2G32150.2 | 47.257 | 237 | 84 | 3 | 16 | 252 | 7 | 202 | 5.51e-69 | 214 |
| Msa1061190 | AT2G32150.3 | 46.083 | 217 | 76 | 3 | 16 | 232 | 7 | 182 | 1.21e-60 | 191 |
Find 87 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACTTCATTCTTTCGTTTC+TGG | 0.100094 | 7_2:-50270129 | Msa1061190:intron |
| TTCCAAATATTTGATATTAT+TGG | 0.138096 | 7_2:-50267906 | Msa1061190:CDS |
| GAACAACTATGGCTGGTTTA+AGG | 0.158157 | 7_2:-50268818 | Msa1061190:CDS |
| GGCCAATAATATCAAATATT+TGG | 0.189719 | 7_2:+50267904 | None:intergenic |
| TCCGAAGGTTTGCAAATAAT+TGG | 0.190370 | 7_2:+50267840 | None:intergenic |
| AAATATGACTGTCTTCTATT+TGG | 0.212208 | 7_2:-50269186 | Msa1061190:intron |
| CCATTGATTTATAGATTATA+TGG | 0.220325 | 7_2:-50268907 | Msa1061190:intron |
| TCTTGCTAAGCCTCCCTTAT+AGG | 0.226837 | 7_2:-50268379 | Msa1061190:CDS |
| GAGAGGCAGTGCCAGAATTA+TGG | 0.244343 | 7_2:-50266924 | Msa1061190:CDS |
| AAACTTACTAGTTTCCTATA+AGG | 0.248483 | 7_2:+50268365 | None:intergenic |
| ATTTCAGATTCCCATAATTC+TGG | 0.252639 | 7_2:+50266913 | None:intergenic |
| TTGCAAATAATTGGTGTCTT+TGG | 0.268860 | 7_2:+50267849 | None:intergenic |
| ATAAGTACACAAGACCTAAA+AGG | 0.274516 | 7_2:+50266563 | None:intergenic |
| ATGAAGTAGTGAGAGGATTA+AGG | 0.282622 | 7_2:+50270143 | None:intergenic |
| AGCAAGAGGTTCCTTAGAAT+TGG | 0.290543 | 7_2:+50268395 | None:intergenic |
| AGGAGCTACTTAATCTATTA+TGG | 0.298861 | 7_2:-50266763 | Msa1061190:intron |
| GGTAAATCACAGAGAATTAA+AGG | 0.311037 | 7_2:-50266982 | Msa1061190:CDS |
| GCATGTGGACAAAATATTAA+AGG | 0.327206 | 7_2:-50269026 | Msa1061190:intron |
| TGAAGCCAGACCCAATTCTA+AGG | 0.354368 | 7_2:-50268406 | Msa1061190:CDS |
| GAAGAAGATATTGAGTTTGT+AGG | 0.359501 | 7_2:-50267972 | Msa1061190:CDS |
| TAGTTGTTTCTCCTCTTAGA+AGG | 0.361596 | 7_2:+50266508 | None:intergenic |
| AACAACTATGGCTGGTTTAA+GGG | 0.377629 | 7_2:-50268817 | Msa1061190:intron |
| TTGGATTGGATTGTGCAAAA+TGG | 0.380576 | 7_2:+50267883 | None:intergenic |
| AGAGGCAGTGCCAGAATTAT+GGG | 0.383627 | 7_2:-50266923 | Msa1061190:CDS |
| ATTCTGGCACTGCCTCTCTA+AGG | 0.393934 | 7_2:+50266929 | None:intergenic |
| AACTTACTAGTTTCCTATAA+GGG | 0.397060 | 7_2:+50268366 | None:intergenic |
| TTGTGGTCAATTTAGGCAAT+TGG | 0.398955 | 7_2:-50268628 | Msa1061190:intron |
| ACCAATTATTTGCAAACCTT+CGG | 0.402223 | 7_2:-50267841 | Msa1061190:CDS |
| GCAAGAGGTTCCTTAGAATT+GGG | 0.408266 | 7_2:+50268396 | None:intergenic |
| CAAGAAAGAGTATTTATAGA+TGG | 0.413790 | 7_2:+50270260 | None:intergenic |
| GTCTTTGGCAACACTTCACT+TGG | 0.416899 | 7_2:+50267864 | None:intergenic |
| AAGGTTGTGGATGCTTTCTA+AGG | 0.423337 | 7_2:+50266948 | None:intergenic |
| TTTGCAATACCACAGCTTAG+TGG | 0.425245 | 7_2:+50269050 | None:intergenic |
| TGTGTACTTATGTTCATGTA+AGG | 0.427653 | 7_2:-50266551 | Msa1061190:three_prime_UTR |
| TGGCAACACTTCACTTGGAT+TGG | 0.430282 | 7_2:+50267869 | None:intergenic |
| AGTTCTTTGTGGGTCAAGAT+TGG | 0.432122 | 7_2:+50267788 | None:intergenic |
| AAGAAGGATGTAAGGTGAAG+GGG | 0.433249 | 7_2:+50270221 | None:intergenic |
| TCTGGCTTCAAATTCTCATA+TGG | 0.444951 | 7_2:+50268419 | None:intergenic |
| ATGCAGTTAAGGCACTAAAC+AGG | 0.445452 | 7_2:-50268076 | Msa1061190:CDS |
| TAGTGAGAGGATTAAGGAAA+AGG | 0.447647 | 7_2:+50270149 | None:intergenic |
| AGGTTCCTTAGAATTGGGTC+TGG | 0.448378 | 7_2:+50268401 | None:intergenic |
| AACTATGGAACAACTATGGC+TGG | 0.456420 | 7_2:-50268825 | Msa1061190:CDS |
| AGACAAAGTTCATGCAGTTA+AGG | 0.463592 | 7_2:-50268087 | Msa1061190:CDS |
| TAAGTACACAAGACCTAAAA+GGG | 0.465001 | 7_2:+50266564 | None:intergenic |
| ACTAGTACTTGTGGTATGAT+TGG | 0.466261 | 7_2:+50267938 | None:intergenic |
| TCTGAAATTAAATCAGAAGT+TGG | 0.466334 | 7_2:-50266898 | Msa1061190:CDS |
| AGAAACACTGTTCTTGTGGA+TGG | 0.473227 | 7_2:+50268001 | None:intergenic |
| GATTATATGGTTGAGAAGCT+TGG | 0.473494 | 7_2:-50268894 | Msa1061190:CDS |
| GCACTGCCTCTCTAAGGTTG+TGG | 0.491454 | 7_2:+50266935 | None:intergenic |
| ATGGTATGAAGAAGGATGTA+AGG | 0.496973 | 7_2:+50270213 | None:intergenic |
| GGAGACATCTGTGACTGCTT+AGG | 0.506170 | 7_2:-50266854 | Msa1061190:exon |
| TGCATGAACTTTGTCTGCAT+TGG | 0.507933 | 7_2:+50268094 | None:intergenic |
| AATAACTACATCTCAACAAA+GGG | 0.514379 | 7_2:+50266690 | None:intergenic |
| CATCAGAAACACTGTTCTTG+TGG | 0.523606 | 7_2:+50267997 | None:intergenic |
| GAAACACTGTTCTTGTGGAT+GGG | 0.532461 | 7_2:+50268002 | None:intergenic |
| GTTAAGGCACTAAACAGGCT+TGG | 0.537369 | 7_2:-50268071 | Msa1061190:CDS |
| AGAAGGATGTAAGGTGAAGG+GGG | 0.538955 | 7_2:+50270222 | None:intergenic |
| TTAGTACAATGGTATGAAGA+AGG | 0.543139 | 7_2:+50270205 | None:intergenic |
| AGTGCAAGAAACATACAAGC+TGG | 0.549461 | 7_2:-50267157 | Msa1061190:CDS |
| TTCGGAATATGCCATTGAGT+TGG | 0.549934 | 7_2:-50267823 | Msa1061190:CDS |
| TAGCGCAGCTTCATGCTACA+AGG | 0.557242 | 7_2:-50266783 | Msa1061190:three_prime_UTR |
| AAAAGGTTATGAAGAAGCAA+AGG | 0.560362 | 7_2:+50270166 | None:intergenic |
| CGAAAGAATGAAGTAGTGAG+AGG | 0.564228 | 7_2:+50270136 | None:intergenic |
| TATCTTGAGAGCCAACTCAA+TGG | 0.573981 | 7_2:+50267812 | None:intergenic |
| GAAGAAGGATGTAAGGTGAA+GGG | 0.574006 | 7_2:+50270220 | None:intergenic |
| GCGCTACCCGTGCTGTAGCA+CGG | 0.577815 | 7_2:+50266800 | None:intergenic |
| TTATTCTAACAAGCTTGCTG+TGG | 0.580000 | 7_2:-50266875 | Msa1061190:CDS |
| TGAAGAAGGATGTAAGGTGA+AGG | 0.585221 | 7_2:+50270219 | None:intergenic |
| AACTCAATGGCATATTCCGA+AGG | 0.590798 | 7_2:+50267825 | None:intergenic |
| TGTGGGACTTGACACTGTGC+TGG | 0.591732 | 7_2:-50267128 | Msa1061190:intron |
| CAATAACTACATCTCAACAA+AGG | 0.593676 | 7_2:+50266689 | None:intergenic |
| GAGATATCCGTGCTACAGCA+CGG | 0.605796 | 7_2:-50266807 | Msa1061190:three_prime_UTR |
| TTGACTATGATGAATATCAC+AGG | 0.610280 | 7_2:-50268597 | Msa1061190:intron |
| AGATATCCGTGCTACAGCAC+GGG | 0.611898 | 7_2:-50266806 | Msa1061190:three_prime_UTR |
| TAGCAATAAGCTTAGTACAA+TGG | 0.612456 | 7_2:+50270194 | None:intergenic |
| TTACTAGTTTCCTATAAGGG+AGG | 0.612508 | 7_2:+50268369 | None:intergenic |
| GTGCAAGAAACATACAAGCT+GGG | 0.613254 | 7_2:-50267156 | Msa1061190:CDS |
| TATAAGGGAGGCTTAGCAAG+AGG | 0.623743 | 7_2:+50268381 | None:intergenic |
| GTTACTACCACTAGTACTTG+TGG | 0.630315 | 7_2:+50267929 | None:intergenic |
| CATACAAGCTGGGAAACGTG+TGG | 0.635233 | 7_2:-50267146 | Msa1061190:CDS |
| CTGCTTGAAATGGAGTACGA+GGG | 0.637705 | 7_2:-50269234 | Msa1061190:exon |
| ATACAAGCTGGGAAACGTGT+GGG | 0.639764 | 7_2:-50267145 | Msa1061190:CDS |
| AATCATACCACAAGTACTAG+TGG | 0.639846 | 7_2:-50267936 | Msa1061190:CDS |
| TCTGCTTGAAATGGAGTACG+AGG | 0.655487 | 7_2:-50269235 | Msa1061190:exon |
| ACTTTGTATCCACTAAGCTG+TGG | 0.665300 | 7_2:-50269059 | Msa1061190:CDS |
| AAGCATCCACAACCTTAGAG+AGG | 0.675174 | 7_2:-50266941 | Msa1061190:CDS |
| TGTGGTATTGCAAAAGCATG+TGG | 0.705500 | 7_2:-50269041 | Msa1061190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAACAAAAAAAATAATATT+TGG | - | chr7_2:50266809-50266828 | Msa1061190:three_prime_UTR | 10.0% |
| !! | TTGATTAAACTATATATATA+AGG | + | chr7_2:50266955-50266974 | None:intergenic | 10.0% |
| !! | AAAGAAAAGAAAATAAAAAA+TGG | + | chr7_2:50267107-50267126 | None:intergenic | 10.0% |
| !! | TTATAATATTTATACACTTT+AGG | + | chr7_2:50268447-50268466 | None:intergenic | 10.0% |
| !!! | AATATTTTGTGATTATGTTT+AGG | - | chr7_2:50266928-50266947 | Msa1061190:CDS | 15.0% |
| !! | TTTAATCAAGAAACTTTAAA+TGG | - | chr7_2:50266966-50266985 | Msa1061190:CDS | 15.0% |
| !! | TTAATCAAGAAACTTTAAAT+GGG | - | chr7_2:50266967-50266986 | Msa1061190:CDS | 15.0% |
| !! | TGTTCAAAGAATTATAATAA+TGG | - | chr7_2:50267038-50267057 | Msa1061190:intron | 15.0% |
| !! | GTTCAAAGAATTATAATAAT+GGG | - | chr7_2:50267039-50267058 | Msa1061190:intron | 15.0% |
| !! | TTATTTCCTTAATGATTTAA+AGG | - | chr7_2:50267079-50267098 | Msa1061190:intron | 15.0% |
| !! | TATTTCCTTAATGATTTAAA+GGG | - | chr7_2:50267080-50267099 | Msa1061190:intron | 15.0% |
| !! | TTTCAATTTAAATATCTTAG+TGG | + | chr7_2:50267413-50267432 | None:intergenic | 15.0% |
| !!! | AACTTATGTTTTTTTTTTTG+TGG | - | chr7_2:50268110-50268129 | Msa1061190:intron | 15.0% |
| !! | TTCCAAATATTTGATATTAT+TGG | - | chr7_2:50268849-50268868 | Msa1061190:CDS | 15.0% |
| !!! | TTACTTGCTATAATAAAAAT+CGG | - | chr7_2:50269156-50269175 | Msa1061190:intron | 15.0% |
| !! | AATGACAAAAAAAACAAATT+AGG | + | chr7_2:50269550-50269569 | None:intergenic | 15.0% |
| !! | ATAACATAATGTCAATAATT+TGG | + | chr7_2:50269694-50269713 | None:intergenic | 15.0% |
| !!! | AAATATTAAATTTCCCTTTT+AGG | - | chr7_2:50270178-50270197 | Msa1061190:five_prime_UTR | 15.0% |
| !!! | GAGTAATTTTGAGAATTAAA+AGG | + | chr7_2:50266765-50266784 | None:intergenic | 20.0% |
| !! | TTAATTCTCAAAATTACTCA+TGG | - | chr7_2:50266766-50266785 | Msa1061190:three_prime_UTR | 20.0% |
| !!! | TCATGGATTAAATAAATGTT+TGG | - | chr7_2:50266783-50266802 | Msa1061190:three_prime_UTR | 20.0% |
| !! | TGCTTAGTTATAATAATTGA+AGG | - | chr7_2:50267131-50267150 | Msa1061190:CDS | 20.0% |
| !! | AAGCATAATAATCATCATAA+AGG | + | chr7_2:50267335-50267354 | None:intergenic | 20.0% |
| !!! | GTCTTTTTGAAATATTGATT+TGG | + | chr7_2:50267372-50267391 | None:intergenic | 20.0% |
| !!! | ATTTCAAAAAGACCATTTTT+AGG | - | chr7_2:50267379-50267398 | Msa1061190:intron | 20.0% |
| !!! | ATGAAACCCTATATAAATTT+TGG | - | chr7_2:50267446-50267465 | Msa1061190:intron | 20.0% |
| !! | TACCTACCAAAATTTATATA+GGG | + | chr7_2:50267455-50267474 | None:intergenic | 20.0% |
| !! | TTACCTACCAAAATTTATAT+AGG | + | chr7_2:50267456-50267475 | None:intergenic | 20.0% |
| !!! | CTCACTTTTTTTATTTGTTA+AGG | - | chr7_2:50267494-50267513 | Msa1061190:intron | 20.0% |
| !! | CCATATAATCTATAAATCAA+TGG | + | chr7_2:50267851-50267870 | None:intergenic | 20.0% |
| !!! | CCATTGATTTATAGATTATA+TGG | - | chr7_2:50267848-50267867 | Msa1061190:CDS | 20.0% |
| !!! | TTTTTTTTTGTGGTCAATTT+AGG | - | chr7_2:50268120-50268139 | Msa1061190:intron | 20.0% |
| !!! | ATTTTAATGATGAGTGTATT+AGG | + | chr7_2:50269006-50269025 | None:intergenic | 20.0% |
| !!! | TTTTAGTAATCTGTAACAAA+CGG | + | chr7_2:50269061-50269080 | None:intergenic | 20.0% |
| !! | TATATAACAAATGTTAGCAA+TGG | + | chr7_2:50269657-50269676 | None:intergenic | 20.0% |
| !! | TGTAACAATCAAATAATTAG+AGG | + | chr7_2:50269735-50269754 | None:intergenic | 20.0% |
| !!! | GAAGGTATGTAAAAAATTAT+TGG | + | chr7_2:50270232-50270251 | None:intergenic | 20.0% |
| !!! | CAAGAAAGAGTATTTATAGA+TGG | + | chr7_2:50266498-50266517 | None:intergenic | 25.0% |
| ! | AATGAATCATTATGAACAAG+AGG | + | chr7_2:50266690-50266709 | None:intergenic | 25.0% |
| !!! | AAACTATGTGTGTTATTTTG+AGG | - | chr7_2:50266734-50266753 | Msa1061190:intron | 25.0% |
| !! | ACATGTTTGAACTTTTTACT+TGG | - | chr7_2:50266891-50266910 | Msa1061190:CDS | 25.0% |
| !! | GAATTATAATAATGGGAGTA+TGG | - | chr7_2:50267046-50267065 | Msa1061190:intron | 25.0% |
| !! | TTTTGTCCTGTTTACAAAAA+AGG | - | chr7_2:50267180-50267199 | Msa1061190:intron | 25.0% |
| !!! | ACTTTTGTTTTGATTTTGAG+TGG | + | chr7_2:50267264-50267283 | None:intergenic | 25.0% |
| !!! | AACCCTATATAAATTTTGGT+AGG | - | chr7_2:50267450-50267469 | Msa1061190:intron | 25.0% |
| ! | AAATATGACTGTCTTCTATT+TGG | - | chr7_2:50267569-50267588 | Msa1061190:intron | 25.0% |
| ! | CACATTACTAAGAACATTAT+TGG | + | chr7_2:50267769-50267788 | None:intergenic | 25.0% |
| !! | TTTGATGCATGTAATTTTGT+TGG | - | chr7_2:50267799-50267818 | Msa1061190:CDS | 25.0% |
| !! | ATAGTTTTTGTAAAGATGGT+TGG | + | chr7_2:50267916-50267935 | None:intergenic | 25.0% |
| ! | AACCATCTTTACAAAAACTA+TGG | - | chr7_2:50267915-50267934 | Msa1061190:CDS | 25.0% |
| !! | TTCCATAGTTTTTGTAAAGA+TGG | + | chr7_2:50267920-50267939 | None:intergenic | 25.0% |
| ! | TAGAAGTGATGTAGTATAAA+AGG | + | chr7_2:50268205-50268224 | None:intergenic | 25.0% |
| !!! | TGTTAATACAGTTTTGTTCA+TGG | - | chr7_2:50268306-50268325 | Msa1061190:intron | 25.0% |
| !! | AACTTACTAGTTTCCTATAA+GGG | + | chr7_2:50268392-50268411 | None:intergenic | 25.0% |
| !! | AAACTTACTAGTTTCCTATA+AGG | + | chr7_2:50268393-50268412 | None:intergenic | 25.0% |
| ! | ATAGGAAAAACACAATAAAG+AGG | + | chr7_2:50268632-50268651 | None:intergenic | 25.0% |
| ! | GGCCAATAATATCAAATATT+TGG | + | chr7_2:50268854-50268873 | None:intergenic | 25.0% |
| ! | GTAAACAGATTCTAAGTTAT+TGG | + | chr7_2:50269100-50269119 | None:intergenic | 25.0% |
| ! | CGTGTGATTACAAATATTAA+GGG | + | chr7_2:50269417-50269436 | None:intergenic | 25.0% |
| ! | ACGTGTGATTACAAATATTA+AGG | + | chr7_2:50269418-50269437 | None:intergenic | 25.0% |
| !! | TCATTTTCAGTTATTCTTTG+AGG | - | chr7_2:50269573-50269592 | Msa1061190:intron | 25.0% |
| ! | TGTTACACATCATTGTATAT+AGG | - | chr7_2:50269748-50269767 | Msa1061190:intron | 25.0% |
| !! | TCTGAAATTAAATCAGAAGT+TGG | - | chr7_2:50269857-50269876 | Msa1061190:intron | 25.0% |
| ! | AATAACTACATCTCAACAAA+GGG | + | chr7_2:50270068-50270087 | None:intergenic | 25.0% |
| !!! | TTTTTTACATACCTTCTAAG+AGG | - | chr7_2:50270236-50270255 | Msa1061190:five_prime_UTR | 25.0% |
| TTAGTACAATGGTATGAAGA+AGG | + | chr7_2:50266553-50266572 | None:intergenic | 30.0% | |
| TAGCAATAAGCTTAGTACAA+TGG | + | chr7_2:50266564-50266583 | None:intergenic | 30.0% | |
| AAAAGGTTATGAAGAAGCAA+AGG | + | chr7_2:50266592-50266611 | None:intergenic | 30.0% | |
| AGAAGAAGAATTGAAGTCAT+TGG | + | chr7_2:50266656-50266675 | None:intergenic | 30.0% | |
| TCATGGGATATGAAAACTTT+AGG | + | chr7_2:50267011-50267030 | None:intergenic | 30.0% | |
| CTTTGAACAAAGTTCATCAT+GGG | + | chr7_2:50267027-50267046 | None:intergenic | 30.0% | |
| TCTTTGAACAAAGTTCATCA+TGG | + | chr7_2:50267028-50267047 | None:intergenic | 30.0% | |
| ATGGACCCTTTAAATCATTA+AGG | + | chr7_2:50267088-50267107 | None:intergenic | 30.0% | |
| TCACAATCATTGAAAGAGAA+TGG | + | chr7_2:50267236-50267255 | None:intergenic | 30.0% | |
| !! | AACAAAAGTTTTATCCCTAG+TGG | - | chr7_2:50267275-50267294 | Msa1061190:intron | 30.0% |
| ! | TTAAGGTTTTCTGCTTGAAA+TGG | - | chr7_2:50267511-50267530 | Msa1061190:intron | 30.0% |
| GCATGTGGACAAAATATTAA+AGG | - | chr7_2:50267729-50267748 | Msa1061190:intron | 30.0% | |
| TGGTACATACAAAACAACAT+TGG | + | chr7_2:50267831-50267850 | None:intergenic | 30.0% | |
| CAAAAACTATGGAACAACTA+TGG | - | chr7_2:50267926-50267945 | Msa1061190:CDS | 30.0% | |
| ATTTAAGCTGAAATTGTCGA+TGG | - | chr7_2:50267993-50268012 | Msa1061190:CDS | 30.0% | |
| TTTAAGCTGAAATTGTCGAT+GGG | - | chr7_2:50267994-50268013 | Msa1061190:CDS | 30.0% | |
| AGAAATTAAGCTGAAATCAC+AGG | - | chr7_2:50268079-50268098 | Msa1061190:CDS | 30.0% | |
| TTGACTATGATGAATATCAC+AGG | - | chr7_2:50268158-50268177 | Msa1061190:intron | 30.0% | |
| AGGTATTAAATTTGAGAGTG+TGG | + | chr7_2:50268427-50268446 | None:intergenic | 30.0% | |
| GAAGAAGATATTGAGTTTGT+AGG | - | chr7_2:50268783-50268802 | Msa1061190:intron | 30.0% | |
| ! | TTGCAAATAATTGGTGTCTT+TGG | + | chr7_2:50268909-50268928 | None:intergenic | 30.0% |
| ACCAATTATTTGCAAACCTT+CGG | - | chr7_2:50268914-50268933 | Msa1061190:intron | 30.0% | |
| ! | GTTTTCTTACAGTTCTTTGT+GGG | + | chr7_2:50268980-50268999 | None:intergenic | 30.0% |
| ! | TGTTTTCTTACAGTTCTTTG+TGG | + | chr7_2:50268981-50269000 | None:intergenic | 30.0% |
| TTTGTAATCACACGTAATTG+TGG | - | chr7_2:50269423-50269442 | Msa1061190:intron | 30.0% | |
| !!! | CTGCGAACTTTGAAATTTTT+AGG | + | chr7_2:50269492-50269511 | None:intergenic | 30.0% |
| ATTAGAGGCTCATATTTGTT+TGG | + | chr7_2:50269720-50269739 | None:intergenic | 30.0% | |
| ACACATCATTGTATATAGGT+TGG | - | chr7_2:50269752-50269771 | Msa1061190:intron | 30.0% | |
| GGTAAATCACAGAGAATTAA+AGG | - | chr7_2:50269773-50269792 | Msa1061190:intron | 30.0% | |
| ATTTCAGATTCCCATAATTC+TGG | + | chr7_2:50269845-50269864 | None:intergenic | 30.0% | |
| AGGAGCTACTTAATCTATTA+TGG | - | chr7_2:50269992-50270011 | Msa1061190:intron | 30.0% | |
| CAATAACTACATCTCAACAA+AGG | + | chr7_2:50270069-50270088 | None:intergenic | 30.0% | |
| TAAGTACACAAGACCTAAAA+GGG | + | chr7_2:50270194-50270213 | None:intergenic | 30.0% | |
| ATAAGTACACAAGACCTAAA+AGG | + | chr7_2:50270195-50270214 | None:intergenic | 30.0% | |
| TGTGTACTTATGTTCATGTA+AGG | - | chr7_2:50270204-50270223 | Msa1061190:five_prime_UTR | 30.0% | |
| ATGGTATGAAGAAGGATGTA+AGG | + | chr7_2:50266545-50266564 | None:intergenic | 35.0% | |
| TAGTGAGAGGATTAAGGAAA+AGG | + | chr7_2:50266609-50266628 | None:intergenic | 35.0% | |
| ATGAAGTAGTGAGAGGATTA+AGG | + | chr7_2:50266615-50266634 | None:intergenic | 35.0% | |
| CTACTTCATTCTTTCGTTTC+TGG | - | chr7_2:50266626-50266645 | Msa1061190:three_prime_UTR | 35.0% | |
| GAGAGTAGACAAGTTTACTA+TGG | - | chr7_2:50266859-50266878 | Msa1061190:CDS | 35.0% | |
| !!! | CAGTGACCTTTTTTGTAAAC+AGG | + | chr7_2:50267189-50267208 | None:intergenic | 35.0% |
| GATGCTAATACAATCCACTA+GGG | + | chr7_2:50267292-50267311 | None:intergenic | 35.0% | |
| AGATGCTAATACAATCCACT+AGG | + | chr7_2:50267293-50267312 | None:intergenic | 35.0% | |
| GATTATATGGTTGAGAAGCT+TGG | - | chr7_2:50267861-50267880 | Msa1061190:CDS | 35.0% | |
| !! | AACAACTATGGCTGGTTTAA+GGG | - | chr7_2:50267938-50267957 | Msa1061190:CDS | 35.0% |
| TTGTGGTCAATTTAGGCAAT+TGG | - | chr7_2:50268127-50268146 | Msa1061190:intron | 35.0% | |
| ! | TCTGGCTTCAAATTCTCATA+TGG | + | chr7_2:50268339-50268358 | None:intergenic | 35.0% |
| ! | TTACTAGTTTCCTATAAGGG+AGG | + | chr7_2:50268389-50268408 | None:intergenic | 35.0% |
| AGACAAAGTTCATGCAGTTA+AGG | - | chr7_2:50268668-50268687 | Msa1061190:intron | 35.0% | |
| !!! | GGACTAGAAGATTGTTTTGA+AGG | - | chr7_2:50268705-50268724 | Msa1061190:intron | 35.0% |
| ACTAGTACTTGTGGTATGAT+TGG | + | chr7_2:50268820-50268839 | None:intergenic | 35.0% | |
| AATCATACCACAAGTACTAG+TGG | - | chr7_2:50268819-50268838 | Msa1061190:CDS | 35.0% | |
| ! | TTGGATTGGATTGTGCAAAA+TGG | + | chr7_2:50268875-50268894 | None:intergenic | 35.0% |
| TCCGAAGGTTTGCAAATAAT+TGG | + | chr7_2:50268918-50268937 | None:intergenic | 35.0% | |
| CCGTGGCTACAAAATTATAA+CGG | + | chr7_2:50269377-50269396 | None:intergenic | 35.0% | |
| ! | CCGTTATAATTTTGTAGCCA+CGG | - | chr7_2:50269374-50269393 | Msa1061190:intron | 35.0% |
| ! | TAATTTTGTAGCCACGGTTT+AGG | - | chr7_2:50269380-50269399 | Msa1061190:intron | 35.0% |
| !! | TTATTCTAACAAGCTTGCTG+TGG | - | chr7_2:50269880-50269899 | Msa1061190:intron | 35.0% |
| !! | TAGTTGTTTCTCCTCTTAGA+AGG | + | chr7_2:50270250-50270269 | None:intergenic | 35.0% |
| AAGAAGGATGTAAGGTGAAG+GGG | + | chr7_2:50266537-50266556 | None:intergenic | 40.0% | |
| GAAGAAGGATGTAAGGTGAA+GGG | + | chr7_2:50266538-50266557 | None:intergenic | 40.0% | |
| TGAAGAAGGATGTAAGGTGA+AGG | + | chr7_2:50266539-50266558 | None:intergenic | 40.0% | |
| CGAAAGAATGAAGTAGTGAG+AGG | + | chr7_2:50266622-50266641 | None:intergenic | 40.0% | |
| GTGGCTTATGCACCTAAAAA+TGG | + | chr7_2:50267394-50267413 | None:intergenic | 40.0% | |
| ACTTTGTATCCACTAAGCTG+TGG | - | chr7_2:50267696-50267715 | Msa1061190:intron | 40.0% | |
| TTTGCAATACCACAGCTTAG+TGG | + | chr7_2:50267708-50267727 | None:intergenic | 40.0% | |
| ! | TGTGGTATTGCAAAAGCATG+TGG | - | chr7_2:50267714-50267733 | Msa1061190:intron | 40.0% |
| AACTATGGAACAACTATGGC+TGG | - | chr7_2:50267930-50267949 | Msa1061190:CDS | 40.0% | |
| !! | GAACAACTATGGCTGGTTTA+AGG | - | chr7_2:50267937-50267956 | Msa1061190:CDS | 40.0% |
| ATCAGTCCTCTCGAATTAGT+CGG | - | chr7_2:50268017-50268036 | Msa1061190:CDS | 40.0% | |
| GCAAGAGGTTCCTTAGAATT+GGG | + | chr7_2:50268362-50268381 | None:intergenic | 40.0% | |
| AGCAAGAGGTTCCTTAGAAT+TGG | + | chr7_2:50268363-50268382 | None:intergenic | 40.0% | |
| ! | CTGCATTGGTGAAGATCTAT+AGG | + | chr7_2:50268650-50268669 | None:intergenic | 40.0% |
| TGCATGAACTTTGTCTGCAT+TGG | + | chr7_2:50268664-50268683 | None:intergenic | 40.0% | |
| ! | ATGCAGTTAAGGCACTAAAC+AGG | - | chr7_2:50268679-50268698 | Msa1061190:intron | 40.0% |
| GAAACACTGTTCTTGTGGAT+GGG | + | chr7_2:50268756-50268775 | None:intergenic | 40.0% | |
| AGAAACACTGTTCTTGTGGA+TGG | + | chr7_2:50268757-50268776 | None:intergenic | 40.0% | |
| CATCAGAAACACTGTTCTTG+TGG | + | chr7_2:50268761-50268780 | None:intergenic | 40.0% | |
| GTTACTACCACTAGTACTTG+TGG | + | chr7_2:50268829-50268848 | None:intergenic | 40.0% | |
| AACTCAATGGCATATTCCGA+AGG | + | chr7_2:50268933-50268952 | None:intergenic | 40.0% | |
| TTCGGAATATGCCATTGAGT+TGG | - | chr7_2:50268932-50268951 | Msa1061190:intron | 40.0% | |
| TATCTTGAGAGCCAACTCAA+TGG | + | chr7_2:50268946-50268965 | None:intergenic | 40.0% | |
| AGTTCTTTGTGGGTCAAGAT+TGG | + | chr7_2:50268970-50268989 | None:intergenic | 40.0% | |
| AGTGCAAGAAACATACAAGC+TGG | - | chr7_2:50269598-50269617 | Msa1061190:intron | 40.0% | |
| GTGCAAGAAACATACAAGCT+GGG | - | chr7_2:50269599-50269618 | Msa1061190:intron | 40.0% | |
| AAGGTTGTGGATGCTTTCTA+AGG | + | chr7_2:50269810-50269829 | None:intergenic | 40.0% | |
| AGAAGGATGTAAGGTGAAGG+GGG | + | chr7_2:50266536-50266555 | None:intergenic | 45.0% | |
| GGAATTGAGAACCATACCTC+TGG | - | chr7_2:50266830-50266849 | Msa1061190:three_prime_UTR | 45.0% | |
| CTCTCTCAAAACCAGAGGTA+TGG | + | chr7_2:50266844-50266863 | None:intergenic | 45.0% | |
| GTCTACTCTCTCAAAACCAG+AGG | + | chr7_2:50266849-50266868 | None:intergenic | 45.0% | |
| TCTGCTTGAAATGGAGTACG+AGG | - | chr7_2:50267520-50267539 | Msa1061190:intron | 45.0% | |
| CTGCTTGAAATGGAGTACGA+GGG | - | chr7_2:50267521-50267540 | Msa1061190:intron | 45.0% | |
| CTAAGACCGACTAATTCGAG+AGG | + | chr7_2:50268026-50268045 | None:intergenic | 45.0% | |
| TGAAGCCAGACCCAATTCTA+AGG | - | chr7_2:50268349-50268368 | Msa1061190:intron | 45.0% | |
| AGGTTCCTTAGAATTGGGTC+TGG | + | chr7_2:50268357-50268376 | None:intergenic | 45.0% | |
| TATAAGGGAGGCTTAGCAAG+AGG | + | chr7_2:50268377-50268396 | None:intergenic | 45.0% | |
| TCTTGCTAAGCCTCCCTTAT+AGG | - | chr7_2:50268376-50268395 | Msa1061190:CDS | 45.0% | |
| ! | GTTAAGGCACTAAACAGGCT+TGG | - | chr7_2:50268684-50268703 | Msa1061190:intron | 45.0% |
| TGGCAACACTTCACTTGGAT+TGG | + | chr7_2:50268889-50268908 | None:intergenic | 45.0% | |
| GTCTTTGGCAACACTTCACT+TGG | + | chr7_2:50268894-50268913 | None:intergenic | 45.0% | |
| ATACAAGCTGGGAAACGTGT+GGG | - | chr7_2:50269610-50269629 | Msa1061190:intron | 45.0% | |
| AAGCATCCACAACCTTAGAG+AGG | - | chr7_2:50269814-50269833 | Msa1061190:intron | 45.0% | |
| AGAGGCAGTGCCAGAATTAT+GGG | - | chr7_2:50269832-50269851 | Msa1061190:intron | 45.0% | |
| GAAGGGGGAGGAAAAATGAG+AGG | + | chr7_2:50266521-50266540 | None:intergenic | 50.0% | |
| CAAAGTTCGCAGTCAGATCG+TGG | - | chr7_2:50269500-50269519 | Msa1061190:intron | 50.0% | |
| CATACAAGCTGGGAAACGTG+TGG | - | chr7_2:50269609-50269628 | Msa1061190:intron | 50.0% | |
| ATTCTGGCACTGCCTCTCTA+AGG | + | chr7_2:50269829-50269848 | None:intergenic | 50.0% | |
| GAGAGGCAGTGCCAGAATTA+TGG | - | chr7_2:50269831-50269850 | Msa1061190:intron | 50.0% | |
| GGAGACATCTGTGACTGCTT+AGG | - | chr7_2:50269901-50269920 | Msa1061190:intron | 50.0% | |
| GAGATATCCGTGCTACAGCA+CGG | - | chr7_2:50269948-50269967 | Msa1061190:intron | 50.0% | |
| AGATATCCGTGCTACAGCAC+GGG | - | chr7_2:50269949-50269968 | Msa1061190:intron | 50.0% | |
| TAGCGCAGCTTCATGCTACA+AGG | - | chr7_2:50269972-50269991 | Msa1061190:intron | 50.0% | |
| AGGATGTAAGGTGAAGGGGG+AGG | + | chr7_2:50266533-50266552 | None:intergenic | 55.0% | |
| TTGCGATGCTGCCTAAACCG+TGG | + | chr7_2:50269394-50269413 | None:intergenic | 55.0% | |
| TGTGGGACTTGACACTGTGC+TGG | - | chr7_2:50269627-50269646 | Msa1061190:intron | 55.0% | |
| !! | GCACTGCCTCTCTAAGGTTG+TGG | + | chr7_2:50269823-50269842 | None:intergenic | 55.0% |
| GCGCTACCCGTGCTGTAGCA+CGG | + | chr7_2:50269958-50269977 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 50266492 | 50270285 | 50266492 | ID=Msa1061190;Name=Msa1061190 |
| chr7_2 | mRNA | 50266492 | 50270285 | 50266492 | ID=Msa1061190-mRNA-1;Parent=Msa1061190;Name=Msa1061190-mRNA-1;_AED=0.11;_eAED=0.11;_QI=170|1|1|1|0.77|0.6|10|341|301 |
| chr7_2 | exon | 50266492 | 50266741 | 50266492 | ID=Msa1061190-mRNA-1:exon:9089;Parent=Msa1061190-mRNA-1 |
| chr7_2 | exon | 50266764 | 50267007 | 50266764 | ID=Msa1061190-mRNA-1:exon:9088;Parent=Msa1061190-mRNA-1 |
| chr7_2 | exon | 50267129 | 50267194 | 50267129 | ID=Msa1061190-mRNA-1:exon:9087;Parent=Msa1061190-mRNA-1 |
| chr7_2 | exon | 50267788 | 50268123 | 50267788 | ID=Msa1061190-mRNA-1:exon:9086;Parent=Msa1061190-mRNA-1 |
| chr7_2 | exon | 50268373 | 50268460 | 50268373 | ID=Msa1061190-mRNA-1:exon:9085;Parent=Msa1061190-mRNA-1 |
| chr7_2 | exon | 50268598 | 50268635 | 50268598 | ID=Msa1061190-mRNA-1:exon:9084;Parent=Msa1061190-mRNA-1 |
| chr7_2 | exon | 50268818 | 50268915 | 50268818 | ID=Msa1061190-mRNA-1:exon:9083;Parent=Msa1061190-mRNA-1 |
| chr7_2 | exon | 50269027 | 50269092 | 50269027 | ID=Msa1061190-mRNA-1:exon:9082;Parent=Msa1061190-mRNA-1 |
| chr7_2 | exon | 50269187 | 50269261 | 50269187 | ID=Msa1061190-mRNA-1:exon:9081;Parent=Msa1061190-mRNA-1 |
| chr7_2 | exon | 50270130 | 50270285 | 50270130 | ID=Msa1061190-mRNA-1:exon:9080;Parent=Msa1061190-mRNA-1 |
| chr7_2 | five_prime_UTR | 50270130 | 50270285 | 50270130 | ID=Msa1061190-mRNA-1:five_prime_utr;Parent=Msa1061190-mRNA-1 |
| chr7_2 | five_prime_UTR | 50269248 | 50269261 | 50269248 | ID=Msa1061190-mRNA-1:five_prime_utr;Parent=Msa1061190-mRNA-1 |
| chr7_2 | CDS | 50269187 | 50269247 | 50269187 | ID=Msa1061190-mRNA-1:cds;Parent=Msa1061190-mRNA-1 |
| chr7_2 | CDS | 50269027 | 50269092 | 50269027 | ID=Msa1061190-mRNA-1:cds;Parent=Msa1061190-mRNA-1 |
| chr7_2 | CDS | 50268818 | 50268915 | 50268818 | ID=Msa1061190-mRNA-1:cds;Parent=Msa1061190-mRNA-1 |
| chr7_2 | CDS | 50268598 | 50268635 | 50268598 | ID=Msa1061190-mRNA-1:cds;Parent=Msa1061190-mRNA-1 |
| chr7_2 | CDS | 50268373 | 50268460 | 50268373 | ID=Msa1061190-mRNA-1:cds;Parent=Msa1061190-mRNA-1 |
| chr7_2 | CDS | 50267788 | 50268123 | 50267788 | ID=Msa1061190-mRNA-1:cds;Parent=Msa1061190-mRNA-1 |
| chr7_2 | CDS | 50267129 | 50267194 | 50267129 | ID=Msa1061190-mRNA-1:cds;Parent=Msa1061190-mRNA-1 |
| chr7_2 | CDS | 50266855 | 50267007 | 50266855 | ID=Msa1061190-mRNA-1:cds;Parent=Msa1061190-mRNA-1 |
| chr7_2 | three_prime_UTR | 50266764 | 50266854 | 50266764 | ID=Msa1061190-mRNA-1:three_prime_utr;Parent=Msa1061190-mRNA-1 |
| chr7_2 | three_prime_UTR | 50266492 | 50266741 | 50266492 | ID=Msa1061190-mRNA-1:three_prime_utr;Parent=Msa1061190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
