Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1022300 | XP_013448876.1 | 96.678 | 301 | 10 | 0 | 1 | 301 | 1 | 301 | 0.0 | 609 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1022300 | sp|Q09893|YAI5_SCHPO | 39.535 | 129 | 74 | 3 | 18 | 143 | 8 | 135 | 7.55e-17 | 81.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1022300 | I3S857 | 96.678 | 301 | 10 | 0 | 1 | 301 | 1 | 301 | 0.0 | 609 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025060 | Msa1022300 | 0.817506 | 3.182493e-52 | -8.615850e-47 |
| Msa0781800 | Msa1022300 | -0.815092 | 1.103773e-51 | -8.615850e-47 |
| Msa0815650 | Msa1022300 | -0.800269 | 1.560030e-48 | -8.615850e-47 |
| Msa0153290 | Msa1022300 | 0.806826 | 6.812705e-50 | -8.615850e-47 |
| Msa0387180 | Msa1022300 | -0.803197 | 3.910046e-49 | -8.615850e-47 |
| Msa0434840 | Msa1022300 | 0.805531 | 1.276241e-49 | -8.615850e-47 |
| Msa0478750 | Msa1022300 | 0.812976 | 3.233311e-51 | -8.615850e-47 |
| Msa1022300 | Msa1061190 | 0.940758 | 1.348763e-100 | -8.615850e-47 |
| Msa1022300 | Msa1106570 | 0.980820 | 4.141029e-151 | -8.615850e-47 |
| Msa1022300 | Msa1192790 | 0.815647 | 8.303988e-52 | -8.615850e-47 |
| Msa1022300 | Msa1203210 | 0.823216 | 1.560702e-53 | -8.615850e-47 |
| Msa1022300 | Msa1235960 | 0.821683 | 3.544141e-53 | -8.615850e-47 |
| Msa1022300 | Msa1235990 | 0.824649 | 7.199018e-54 | -8.615850e-47 |
| Msa1022300 | Msa1295840 | 0.819284 | 1.258951e-52 | -8.615850e-47 |
| Msa1022300 | Msa1304980 | -0.813273 | 2.782510e-51 | -8.615850e-47 |
| Msa1022300 | Msa1316090 | 0.815859 | 7.449985e-52 | -8.615850e-47 |
| Msa1022300 | Msa1327400 | 0.813615 | 2.340577e-51 | -8.615850e-47 |
| Msa1022300 | Msa1327420 | 0.812514 | 4.079973e-51 | -8.615850e-47 |
| Msa0522830 | Msa1022300 | 0.805005 | 1.645111e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1022300 | MtrunA17_Chr7g0238911 | 96.678 | 301 | 10 | 0 | 1 | 301 | 1 | 301 | 0.0 | 609 |
| Msa1022300 | MtrunA17_Chr4g0009921 | 83.828 | 303 | 40 | 4 | 1 | 301 | 1 | 296 | 0.0 | 500 |
| Msa1022300 | MtrunA17_Chr4g0009961 | 73.510 | 302 | 77 | 2 | 1 | 301 | 1 | 300 | 6.04e-162 | 452 |
| Msa1022300 | MtrunA17_Chr4g0031841 | 54.485 | 301 | 117 | 3 | 1 | 301 | 1 | 281 | 2.26e-113 | 328 |
| Msa1022300 | MtrunA17_Chr2g0328451 | 55.298 | 302 | 123 | 3 | 1 | 301 | 1 | 291 | 2.64e-113 | 329 |
| Msa1022300 | MtrunA17_Chr1g0193721 | 50.347 | 288 | 95 | 2 | 14 | 301 | 10 | 249 | 7.11e-99 | 291 |
| Msa1022300 | MtrunA17_Chr1g0205581 | 44.056 | 286 | 113 | 4 | 15 | 298 | 10 | 250 | 2.99e-77 | 236 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1022300 | AT5G02230.2 | 69.205 | 302 | 70 | 2 | 1 | 301 | 1 | 280 | 6.54e-144 | 406 |
| Msa1022300 | AT5G02230.1 | 69.205 | 302 | 70 | 2 | 1 | 301 | 1 | 280 | 6.54e-144 | 406 |
| Msa1022300 | AT5G02230.3 | 69.205 | 302 | 70 | 2 | 1 | 301 | 38 | 317 | 2.01e-143 | 406 |
| Msa1022300 | AT5G59480.4 | 55.518 | 299 | 112 | 2 | 1 | 297 | 1 | 280 | 4.01e-118 | 341 |
| Msa1022300 | AT5G59480.5 | 55.518 | 299 | 112 | 2 | 1 | 297 | 1 | 280 | 4.01e-118 | 341 |
| Msa1022300 | AT5G59480.3 | 55.518 | 299 | 112 | 2 | 1 | 297 | 1 | 280 | 4.01e-118 | 341 |
| Msa1022300 | AT5G59480.1 | 55.518 | 299 | 112 | 2 | 1 | 297 | 1 | 280 | 4.01e-118 | 341 |
| Msa1022300 | AT5G59480.2 | 55.518 | 299 | 111 | 3 | 1 | 297 | 1 | 279 | 3.35e-116 | 336 |
| Msa1022300 | AT5G59490.1 | 54.153 | 301 | 97 | 4 | 6 | 301 | 2 | 266 | 3.18e-103 | 303 |
| Msa1022300 | AT3G62040.1 | 53.165 | 237 | 63 | 3 | 45 | 280 | 1 | 190 | 6.49e-83 | 249 |
| Msa1022300 | AT2G32150.1 | 46.617 | 266 | 101 | 3 | 16 | 281 | 7 | 231 | 2.06e-82 | 249 |
| Msa1022300 | AT5G59490.2 | 55.061 | 247 | 75 | 3 | 6 | 252 | 2 | 212 | 6.74e-81 | 244 |
| Msa1022300 | AT2G32150.2 | 47.257 | 237 | 84 | 3 | 16 | 252 | 7 | 202 | 5.63e-69 | 214 |
| Msa1022300 | AT2G32150.3 | 46.083 | 217 | 76 | 3 | 16 | 232 | 7 | 182 | 1.16e-60 | 191 |
Find 85 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCAAATATTTGATATTAT+TGG | 0.138096 | 7_1:+48409626 | Msa1022300:CDS |
| GAACAACTATGGCTGGTTTA+AGG | 0.158157 | 7_1:+48408705 | Msa1022300:CDS |
| AAATATGATTGTCTTCTATT+TGG | 0.166756 | 7_1:+48408337 | Msa1022300:CDS |
| GGCCAATAATATCAAATATT+TGG | 0.189719 | 7_1:-48409628 | None:intergenic |
| TCCGAAGGTTTGCAAATAAT+TGG | 0.190370 | 7_1:-48409692 | None:intergenic |
| CCATTGATTTATAGATTATA+TGG | 0.220325 | 7_1:+48408616 | Msa1022300:intron |
| TCTTGCTAAGCCTCCCTTAT+AGG | 0.226837 | 7_1:+48409154 | Msa1022300:CDS |
| GAGAGGCAGTGCCAGAATTA+TGG | 0.244343 | 7_1:+48410604 | Msa1022300:CDS |
| AAACTTACTAGTTTCCTATA+AGG | 0.248483 | 7_1:-48409168 | None:intergenic |
| ATTTCAGATTCCCATAATTC+TGG | 0.252639 | 7_1:-48410615 | None:intergenic |
| TTGCAAATAATTGGTGTCTT+TGG | 0.268860 | 7_1:-48409683 | None:intergenic |
| ATAAGTACACAAGACCTAAA+AGG | 0.274516 | 7_1:-48410965 | None:intergenic |
| ATGAAGTAGTGAGAGGATTA+AGG | 0.282622 | 7_1:-48407383 | None:intergenic |
| AGCAAGAGGTTCCTTAGAAT+TGG | 0.290543 | 7_1:-48409138 | None:intergenic |
| GGTAAATCACAGAGAATTAA+AGG | 0.311037 | 7_1:+48410546 | Msa1022300:CDS |
| AGGAGCTACTTAATCAATTA+TGG | 0.315918 | 7_1:+48410765 | Msa1022300:three_prime_UTR |
| GCATGTGGACAAAATATTAA+AGG | 0.327206 | 7_1:+48408497 | Msa1022300:CDS |
| TGAAGCCAGACCCAATTCTA+AGG | 0.354368 | 7_1:+48409127 | Msa1022300:CDS |
| GAAGAAGATATTGAGTTTGT+AGG | 0.359501 | 7_1:+48409560 | Msa1022300:CDS |
| TAGTTGTTTCTCCTCTTAGA+AGG | 0.361596 | 7_1:-48411020 | None:intergenic |
| AACAACTATGGCTGGTTTAA+GGG | 0.377629 | 7_1:+48408706 | Msa1022300:CDS |
| TTGGATTGGATTGTGCAAAA+TGG | 0.380576 | 7_1:-48409649 | None:intergenic |
| AGAGGCAGTGCCAGAATTAT+GGG | 0.383627 | 7_1:+48410605 | Msa1022300:CDS |
| ATTCTGGCACTGCCTCTCTA+AGG | 0.393934 | 7_1:-48410599 | None:intergenic |
| AACTTACTAGTTTCCTATAA+GGG | 0.397060 | 7_1:-48409167 | None:intergenic |
| TTGTGGTCAATTTAGGCAAT+TGG | 0.398955 | 7_1:+48408905 | Msa1022300:intron |
| ACCAATTATTTGCAAACCTT+CGG | 0.402223 | 7_1:+48409691 | Msa1022300:CDS |
| GCAAGAGGTTCCTTAGAATT+GGG | 0.408266 | 7_1:-48409137 | None:intergenic |
| CAAGAAAGAGTATTTATAGA+TGG | 0.413790 | 7_1:-48407266 | None:intergenic |
| GTCTTTGGCAACACTTCACT+TGG | 0.416899 | 7_1:-48409668 | None:intergenic |
| AAGGTTGTGGATGCTTTCTA+AGG | 0.423337 | 7_1:-48410580 | None:intergenic |
| TTTGCAATACCACAGCTTAG+TGG | 0.425245 | 7_1:-48408473 | None:intergenic |
| TGTGTACTTATGTTCATGTA+AGG | 0.427653 | 7_1:+48410977 | Msa1022300:three_prime_UTR |
| TGGCAACACTTCACTTGGAT+TGG | 0.430282 | 7_1:-48409663 | None:intergenic |
| AGTTCTTTGTGGGTCAAGAT+TGG | 0.432122 | 7_1:-48409744 | None:intergenic |
| AAGAAGGATGTAAGGTGAAG+GGG | 0.433249 | 7_1:-48407305 | None:intergenic |
| TCTGGCTTCAAATTCTCATA+TGG | 0.444951 | 7_1:-48409114 | None:intergenic |
| ATGCAGTTAAGGCACTAAAC+AGG | 0.445452 | 7_1:+48409456 | Msa1022300:CDS |
| TAGTGAGAGGATTAAGGAAA+AGG | 0.447647 | 7_1:-48407377 | None:intergenic |
| AGGTTCCTTAGAATTGGGTC+TGG | 0.448378 | 7_1:-48409132 | None:intergenic |
| AACTATGGAACAACTATGGC+TGG | 0.456420 | 7_1:+48408698 | Msa1022300:CDS |
| AGAAACAATGTTCTTGTGGA+TGG | 0.458564 | 7_1:-48409531 | None:intergenic |
| AGACAAAGTTCATGCAGTTA+AGG | 0.463592 | 7_1:+48409445 | Msa1022300:CDS |
| TAAGTACACAAGACCTAAAA+GGG | 0.465001 | 7_1:-48410964 | None:intergenic |
| ACTAGTACTTGTGGTATGAT+TGG | 0.466261 | 7_1:-48409594 | None:intergenic |
| TCTGAAATTAAATCAGAAGT+TGG | 0.466334 | 7_1:+48410630 | Msa1022300:CDS |
| GATTATATGGTTGAGAAGCT+TGG | 0.473494 | 7_1:+48408629 | Msa1022300:intron |
| GCACTGCCTCTCTAAGGTTG+TGG | 0.491454 | 7_1:-48410593 | None:intergenic |
| ATGGTATGAAGAAGGATGTA+AGG | 0.496973 | 7_1:-48407313 | None:intergenic |
| GGAGACATCTGTGACTGCTT+AGG | 0.506170 | 7_1:+48410674 | Msa1022300:CDS |
| TGCATGAACTTTGTCTGCAT+TGG | 0.507933 | 7_1:-48409438 | None:intergenic |
| AATAACTACATCTCAACAAA+GGG | 0.514379 | 7_1:-48410838 | None:intergenic |
| GAAACAATGTTCTTGTGGAT+GGG | 0.521885 | 7_1:-48409530 | None:intergenic |
| CATCAGAAACAATGTTCTTG+TGG | 0.527810 | 7_1:-48409535 | None:intergenic |
| GTTAAGGCACTAAACAGGCT+TGG | 0.537369 | 7_1:+48409461 | Msa1022300:CDS |
| AGAAGGATGTAAGGTGAAGG+GGG | 0.538955 | 7_1:-48407304 | None:intergenic |
| TTAGTACAATGGTATGAAGA+AGG | 0.543139 | 7_1:-48407321 | None:intergenic |
| AGTGCAAGAAACATACAAGC+TGG | 0.549461 | 7_1:+48410371 | Msa1022300:CDS |
| TTCGGAATATGCCATTGAGT+TGG | 0.549934 | 7_1:+48409709 | Msa1022300:CDS |
| CAAAAGAATGAAGTAGTGAG+AGG | 0.558798 | 7_1:-48407390 | None:intergenic |
| AAAAGGTTATGAAGAAGCAA+AGG | 0.560362 | 7_1:-48407360 | None:intergenic |
| TATCTTGAGAGCCAACTCAA+TGG | 0.573981 | 7_1:-48409720 | None:intergenic |
| GAAGAAGGATGTAAGGTGAA+GGG | 0.574006 | 7_1:-48407306 | None:intergenic |
| GCGCTACCCGTGCTGTAGCA+CGG | 0.577815 | 7_1:-48410728 | None:intergenic |
| TTATTCTAACAAGCTTGCTG+TGG | 0.580000 | 7_1:+48410653 | Msa1022300:CDS |
| TGAAGAAGGATGTAAGGTGA+AGG | 0.585221 | 7_1:-48407307 | None:intergenic |
| AACTCAATGGCATATTCCGA+AGG | 0.590798 | 7_1:-48409707 | None:intergenic |
| TGTGGGACTTGACACTGTGC+TGG | 0.591732 | 7_1:+48410400 | Msa1022300:CDS |
| CAATAACTACATCTCAACAA+AGG | 0.593676 | 7_1:-48410839 | None:intergenic |
| GAGATATCCGTGCTACAGCA+CGG | 0.605796 | 7_1:+48410721 | Msa1022300:three_prime_UTR |
| TTGACTATGATGAATATCAC+AGG | 0.610280 | 7_1:+48408936 | Msa1022300:CDS |
| AGATATCCGTGCTACAGCAC+GGG | 0.611898 | 7_1:+48410722 | Msa1022300:three_prime_UTR |
| TAGCAATAAGCTTAGTACAA+TGG | 0.612456 | 7_1:-48407332 | None:intergenic |
| TTACTAGTTTCCTATAAGGG+AGG | 0.612508 | 7_1:-48409164 | None:intergenic |
| GTGCAAGAAACATACAAGCT+GGG | 0.613254 | 7_1:+48410372 | Msa1022300:CDS |
| TATAAGGGAGGCTTAGCAAG+AGG | 0.623743 | 7_1:-48409152 | None:intergenic |
| GTTACTACCACTAGTACTTG+TGG | 0.630315 | 7_1:-48409603 | None:intergenic |
| CATACAAGCTGGGAAACGTG+TGG | 0.635233 | 7_1:+48410382 | Msa1022300:CDS |
| CTGCTTGAAATGGAGTACGA+GGG | 0.637705 | 7_1:+48408289 | Msa1022300:exon |
| ATACAAGCTGGGAAACGTGT+GGG | 0.639764 | 7_1:+48410383 | Msa1022300:CDS |
| AATCATACCACAAGTACTAG+TGG | 0.639846 | 7_1:+48409596 | Msa1022300:CDS |
| TCTGCTTGAAATGGAGTACG+AGG | 0.655487 | 7_1:+48408288 | Msa1022300:exon |
| ACTTTGTATCCACTAAGCTG+TGG | 0.665300 | 7_1:+48408464 | Msa1022300:CDS |
| AAGCATCCACAACCTTAGAG+AGG | 0.675174 | 7_1:+48410587 | Msa1022300:CDS |
| TGTGGTATTGCAAAAGCATG+TGG | 0.705500 | 7_1:+48408482 | Msa1022300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGATTAAACTATATATATA+AGG | - | chr7_1:48407728-48407747 | None:intergenic | 10.0% |
| !! | AAAGAAAAGAAAATAAAAAA+TGG | - | chr7_1:48407880-48407899 | None:intergenic | 10.0% |
| !!! | AATATTTTGTGATTATGTTT+AGG | + | chr7_1:48407701-48407720 | Msa1022300:intron | 15.0% |
| !! | TTTAATCAAGAAACTTTAAA+TGG | + | chr7_1:48407739-48407758 | Msa1022300:intron | 15.0% |
| !! | TTAATCAAGAAACTTTAAAT+GGG | + | chr7_1:48407740-48407759 | Msa1022300:intron | 15.0% |
| !! | TGTTCAAAGAATTATAATAA+TGG | + | chr7_1:48407811-48407830 | Msa1022300:intron | 15.0% |
| !! | GTTCAAAGAATTATAATAAT+GGG | + | chr7_1:48407812-48407831 | Msa1022300:intron | 15.0% |
| !! | TTATTTCCTTAATGATTTAA+AGG | + | chr7_1:48407852-48407871 | Msa1022300:intron | 15.0% |
| !! | TATTTCCTTAATGATTTAAA+GGG | + | chr7_1:48407853-48407872 | Msa1022300:intron | 15.0% |
| !! | TTCCAAATATTTGATATTAT+TGG | + | chr7_1:48409626-48409645 | Msa1022300:CDS | 15.0% |
| !!! | TTTTAATAATCTGTAACAAA+CGG | - | chr7_1:48409839-48409858 | None:intergenic | 15.0% |
| !! | TTACTTCCTATAATAAAAAT+CGG | + | chr7_1:48409930-48409949 | Msa1022300:intron | 15.0% |
| !!! | TAAAAACCGATTTTTATTAT+AGG | - | chr7_1:48409939-48409958 | None:intergenic | 15.0% |
| !! | AATGACAAAAAAAACAAATT+AGG | - | chr7_1:48410323-48410342 | None:intergenic | 15.0% |
| !!! | AAATATTAAATTTCCCTTTT+AGG | + | chr7_1:48410951-48410970 | Msa1022300:three_prime_UTR | 15.0% |
| !!! | GAGTAATTTTGAGAATTAAA+AGG | - | chr7_1:48407536-48407555 | None:intergenic | 20.0% |
| !! | TTAATTCTCAAAATTACTCA+TGG | + | chr7_1:48407537-48407556 | Msa1022300:intron | 20.0% |
| !!! | TCATGGATTAAATAAATGTT+TGG | + | chr7_1:48407554-48407573 | Msa1022300:intron | 20.0% |
| !! | TGCTTAGTTATAATAATTGA+AGG | + | chr7_1:48407904-48407923 | Msa1022300:intron | 20.0% |
| !! | AAGCATAATAATCATCATAA+AGG | - | chr7_1:48408103-48408122 | None:intergenic | 20.0% |
| !!! | GTCTTTTTGAAATATTGATT+TGG | - | chr7_1:48408140-48408159 | None:intergenic | 20.0% |
| !!! | ATTTCAAAAAGACCATTTTT+AGG | + | chr7_1:48408147-48408166 | Msa1022300:intron | 20.0% |
| !! | TTTCAATTTACATATCTTAG+TGG | - | chr7_1:48408181-48408200 | None:intergenic | 20.0% |
| !!! | ATGAAACCCTATATAAATTT+TGG | + | chr7_1:48408214-48408233 | Msa1022300:intron | 20.0% |
| !! | TACCTACCAAAATTTATATA+GGG | - | chr7_1:48408223-48408242 | None:intergenic | 20.0% |
| !! | TTACCTACCAAAATTTATAT+AGG | - | chr7_1:48408224-48408243 | None:intergenic | 20.0% |
| !!! | CTCACTTTTTTTATTTGTTA+AGG | + | chr7_1:48408262-48408281 | Msa1022300:intron | 20.0% |
| !! | AAATATGATTGTCTTCTATT+TGG | + | chr7_1:48408337-48408356 | Msa1022300:CDS | 20.0% |
| !! | CCATATAATCTATAAATCAA+TGG | - | chr7_1:48408619-48408638 | None:intergenic | 20.0% |
| !!! | CCATTGATTTATAGATTATA+TGG | + | chr7_1:48408616-48408635 | Msa1022300:intron | 20.0% |
| !!! | CAACTTATGTTTTTTTTTTG+TGG | + | chr7_1:48408888-48408907 | Msa1022300:intron | 20.0% |
| !!! | TTTTTTTTTGTGGTCAATTT+AGG | + | chr7_1:48408898-48408917 | Msa1022300:intron | 20.0% |
| !!! | ATTTTAATGATGAGTGTATT+AGG | - | chr7_1:48409783-48409802 | None:intergenic | 20.0% |
| !! | TATATAACAAATGTTAGCAA+TGG | - | chr7_1:48410430-48410449 | None:intergenic | 20.0% |
| !! | GTAACATAATGTCAATAATT+TGG | - | chr7_1:48410467-48410486 | None:intergenic | 20.0% |
| !! | TGTAACAATCAAATAATTAG+AGG | - | chr7_1:48410508-48410527 | None:intergenic | 20.0% |
| !!! | GAAGGTATGTAAAAAATTAT+TGG | - | chr7_1:48411005-48411024 | None:intergenic | 20.0% |
| !!! | CAAGAAAGAGTATTTATAGA+TGG | - | chr7_1:48407269-48407288 | None:intergenic | 25.0% |
| ! | AATGAATCATTATGAACAAG+AGG | - | chr7_1:48407461-48407480 | None:intergenic | 25.0% |
| !!! | AAACTATGTGTGTTATTTTG+AGG | + | chr7_1:48407505-48407524 | Msa1022300:intron | 25.0% |
| !! | ACATGTTTGAACTTTTTACT+TGG | + | chr7_1:48407664-48407683 | Msa1022300:intron | 25.0% |
| !! | GAATTATAATAATGGGAGTA+TGG | + | chr7_1:48407819-48407838 | Msa1022300:intron | 25.0% |
| !! | TTTTGTCCTGTTTACAAAAA+AGG | + | chr7_1:48407953-48407972 | Msa1022300:intron | 25.0% |
| !!! | ACTTTTGTTTTGATTTTGAG+TGG | - | chr7_1:48408032-48408051 | None:intergenic | 25.0% |
| !!! | AACCCTATATAAATTTTGGT+AGG | + | chr7_1:48408218-48408237 | Msa1022300:intron | 25.0% |
| ! | CACATTACTAAGAACATTAT+TGG | - | chr7_1:48408537-48408556 | None:intergenic | 25.0% |
| !! | TTTGATGCATGTAATTTTGT+TGG | + | chr7_1:48408567-48408586 | Msa1022300:intron | 25.0% |
| !! | ATAGTTTTTGTAAAGATGGT+TGG | - | chr7_1:48408684-48408703 | None:intergenic | 25.0% |
| ! | AACCATCTTTACAAAAACTA+TGG | + | chr7_1:48408683-48408702 | Msa1022300:CDS | 25.0% |
| !! | TTCCATAGTTTTTGTAAAGA+TGG | - | chr7_1:48408688-48408707 | None:intergenic | 25.0% |
| ! | TAGAAGTGATGTAGTATAAA+AGG | - | chr7_1:48408983-48409002 | None:intergenic | 25.0% |
| !!! | TGTTAATACAGTTTTGTTCA+TGG | + | chr7_1:48409084-48409103 | Msa1022300:intron | 25.0% |
| !! | AACTTACTAGTTTCCTATAA+GGG | - | chr7_1:48409170-48409189 | None:intergenic | 25.0% |
| !! | AAACTTACTAGTTTCCTATA+AGG | - | chr7_1:48409171-48409190 | None:intergenic | 25.0% |
| ! | AGTTATTAAATTTGAGAGTG+TGG | - | chr7_1:48409205-48409224 | None:intergenic | 25.0% |
| ! | ATAGGAAAAACACAATAAAG+AGG | - | chr7_1:48409409-48409428 | None:intergenic | 25.0% |
| ! | GGCCAATAATATCAAATATT+TGG | - | chr7_1:48409631-48409650 | None:intergenic | 25.0% |
| ! | CGTGTGATTACAAATATTAA+GGG | - | chr7_1:48410190-48410209 | None:intergenic | 25.0% |
| ! | ACGTGTGATTACAAATATTA+AGG | - | chr7_1:48410191-48410210 | None:intergenic | 25.0% |
| !! | TTTGTAATCACACGTAATTT+TGG | + | chr7_1:48410196-48410215 | Msa1022300:intron | 25.0% |
| !! | TCATTTTCAGTTATTCTTTG+AGG | + | chr7_1:48410346-48410365 | Msa1022300:intron | 25.0% |
| ! | TGTTACACATCATTGTATAT+AGG | + | chr7_1:48410521-48410540 | Msa1022300:intron | 25.0% |
| !! | TCTGAAATTAAATCAGAAGT+TGG | + | chr7_1:48410630-48410649 | Msa1022300:CDS | 25.0% |
| ! | AATAACTACATCTCAACAAA+GGG | - | chr7_1:48410841-48410860 | None:intergenic | 25.0% |
| !!! | TTTTTTACATACCTTCTAAG+AGG | + | chr7_1:48411009-48411028 | Msa1022300:three_prime_UTR | 25.0% |
| TTAGTACAATGGTATGAAGA+AGG | - | chr7_1:48407324-48407343 | None:intergenic | 30.0% | |
| TAGCAATAAGCTTAGTACAA+TGG | - | chr7_1:48407335-48407354 | None:intergenic | 30.0% | |
| AAAAGGTTATGAAGAAGCAA+AGG | - | chr7_1:48407363-48407382 | None:intergenic | 30.0% | |
| !! | CTACTTCATTCTTTTGTTTC+TGG | + | chr7_1:48407397-48407416 | Msa1022300:five_prime_UTR | 30.0% |
| AGAAGAAGAATTGAAGTCAT+TGG | - | chr7_1:48407427-48407446 | None:intergenic | 30.0% | |
| TCATGGGATATGAAAACTTT+AGG | - | chr7_1:48407784-48407803 | None:intergenic | 30.0% | |
| CTTTGAACAAAGTTCATCAT+GGG | - | chr7_1:48407800-48407819 | None:intergenic | 30.0% | |
| TCTTTGAACAAAGTTCATCA+TGG | - | chr7_1:48407801-48407820 | None:intergenic | 30.0% | |
| ATGGACCCTTTAAATCATTA+AGG | - | chr7_1:48407861-48407880 | None:intergenic | 30.0% | |
| !! | AACAAAAGTTTTATCCCTAG+TGG | + | chr7_1:48408043-48408062 | Msa1022300:intron | 30.0% |
| ! | TTAAGGTTTTCTGCTTGAAA+TGG | + | chr7_1:48408279-48408298 | Msa1022300:intron | 30.0% |
| GCATGTGGACAAAATATTAA+AGG | + | chr7_1:48408497-48408516 | Msa1022300:CDS | 30.0% | |
| CAAAAACTATGGAACAACTA+TGG | + | chr7_1:48408694-48408713 | Msa1022300:CDS | 30.0% | |
| ATTTAAGCTGAAATTGTCGA+TGG | + | chr7_1:48408772-48408791 | Msa1022300:intron | 30.0% | |
| TTTAAGCTGAAATTGTCGAT+GGG | + | chr7_1:48408773-48408792 | Msa1022300:intron | 30.0% | |
| AGAAATTAAGCTGAAATCAC+AGG | + | chr7_1:48408858-48408877 | Msa1022300:intron | 30.0% | |
| TTGACTATGATGAATATCAC+AGG | + | chr7_1:48408936-48408955 | Msa1022300:CDS | 30.0% | |
| GAAGAAGATATTGAGTTTGT+AGG | + | chr7_1:48409560-48409579 | Msa1022300:CDS | 30.0% | |
| ! | TTGCAAATAATTGGTGTCTT+TGG | - | chr7_1:48409686-48409705 | None:intergenic | 30.0% |
| ACCAATTATTTGCAAACCTT+CGG | + | chr7_1:48409691-48409710 | Msa1022300:CDS | 30.0% | |
| ! | GTTTTCTTACAGTTCTTTGT+GGG | - | chr7_1:48409757-48409776 | None:intergenic | 30.0% |
| ! | TGTTTTCTTACAGTTCTTTG+TGG | - | chr7_1:48409758-48409777 | None:intergenic | 30.0% |
| !!! | CTGCGAACTTTGAAATTTTT+AGG | - | chr7_1:48410265-48410284 | None:intergenic | 30.0% |
| ATTAGAGGCTCATATTTGTT+TGG | - | chr7_1:48410493-48410512 | None:intergenic | 30.0% | |
| ACACATCATTGTATATAGGT+TGG | + | chr7_1:48410525-48410544 | Msa1022300:intron | 30.0% | |
| GGTAAATCACAGAGAATTAA+AGG | + | chr7_1:48410546-48410565 | Msa1022300:CDS | 30.0% | |
| ATTTCAGATTCCCATAATTC+TGG | - | chr7_1:48410618-48410637 | None:intergenic | 30.0% | |
| AGGAGCTACTTAATCAATTA+TGG | + | chr7_1:48410765-48410784 | Msa1022300:three_prime_UTR | 30.0% | |
| CAATAACTACATCTCAACAA+AGG | - | chr7_1:48410842-48410861 | None:intergenic | 30.0% | |
| TAAGTACACAAGACCTAAAA+GGG | - | chr7_1:48410967-48410986 | None:intergenic | 30.0% | |
| ATAAGTACACAAGACCTAAA+AGG | - | chr7_1:48410968-48410987 | None:intergenic | 30.0% | |
| TGTGTACTTATGTTCATGTA+AGG | + | chr7_1:48410977-48410996 | Msa1022300:three_prime_UTR | 30.0% | |
| ATGGTATGAAGAAGGATGTA+AGG | - | chr7_1:48407316-48407335 | None:intergenic | 35.0% | |
| TAGTGAGAGGATTAAGGAAA+AGG | - | chr7_1:48407380-48407399 | None:intergenic | 35.0% | |
| ATGAAGTAGTGAGAGGATTA+AGG | - | chr7_1:48407386-48407405 | None:intergenic | 35.0% | |
| CAAAAGAATGAAGTAGTGAG+AGG | - | chr7_1:48407393-48407412 | None:intergenic | 35.0% | |
| GAGAGTAGACAAGTTTACTA+TGG | + | chr7_1:48407632-48407651 | Msa1022300:intron | 35.0% | |
| !!! | CAGTGACCTTTTTTGTAAAC+AGG | - | chr7_1:48407962-48407981 | None:intergenic | 35.0% |
| GATGCTAATACAATCCACTA+GGG | - | chr7_1:48408060-48408079 | None:intergenic | 35.0% | |
| AGATGCTAATACAATCCACT+AGG | - | chr7_1:48408061-48408080 | None:intergenic | 35.0% | |
| GATTATATGGTTGAGAAGCT+TGG | + | chr7_1:48408629-48408648 | Msa1022300:intron | 35.0% | |
| !! | AACAACTATGGCTGGTTTAA+GGG | + | chr7_1:48408706-48408725 | Msa1022300:CDS | 35.0% |
| TTGTGGTCAATTTAGGCAAT+TGG | + | chr7_1:48408905-48408924 | Msa1022300:intron | 35.0% | |
| ! | TCTGGCTTCAAATTCTCATA+TGG | - | chr7_1:48409117-48409136 | None:intergenic | 35.0% |
| ! | TTACTAGTTTCCTATAAGGG+AGG | - | chr7_1:48409167-48409186 | None:intergenic | 35.0% |
| AGACAAAGTTCATGCAGTTA+AGG | + | chr7_1:48409445-48409464 | Msa1022300:CDS | 35.0% | |
| !!! | GGACTAGAAGATTGTTTTGA+AGG | + | chr7_1:48409482-48409501 | Msa1022300:CDS | 35.0% |
| GAAACAATGTTCTTGTGGAT+GGG | - | chr7_1:48409533-48409552 | None:intergenic | 35.0% | |
| AGAAACAATGTTCTTGTGGA+TGG | - | chr7_1:48409534-48409553 | None:intergenic | 35.0% | |
| CATCAGAAACAATGTTCTTG+TGG | - | chr7_1:48409538-48409557 | None:intergenic | 35.0% | |
| ACTAGTACTTGTGGTATGAT+TGG | - | chr7_1:48409597-48409616 | None:intergenic | 35.0% | |
| AATCATACCACAAGTACTAG+TGG | + | chr7_1:48409596-48409615 | Msa1022300:CDS | 35.0% | |
| ! | TTGGATTGGATTGTGCAAAA+TGG | - | chr7_1:48409652-48409671 | None:intergenic | 35.0% |
| TCCGAAGGTTTGCAAATAAT+TGG | - | chr7_1:48409695-48409714 | None:intergenic | 35.0% | |
| CCGTGGCTACAAAATTATAA+CGG | - | chr7_1:48410150-48410169 | None:intergenic | 35.0% | |
| ! | CCGTTATAATTTTGTAGCCA+CGG | + | chr7_1:48410147-48410166 | Msa1022300:intron | 35.0% |
| ! | TAATTTTGTAGCCACGGTTT+AGG | + | chr7_1:48410153-48410172 | Msa1022300:intron | 35.0% |
| !! | TTATTCTAACAAGCTTGCTG+TGG | + | chr7_1:48410653-48410672 | Msa1022300:CDS | 35.0% |
| !! | TAGTTGTTTCTCCTCTTAGA+AGG | - | chr7_1:48411023-48411042 | None:intergenic | 35.0% |
| AAGAAGGATGTAAGGTGAAG+GGG | - | chr7_1:48407308-48407327 | None:intergenic | 40.0% | |
| GAAGAAGGATGTAAGGTGAA+GGG | - | chr7_1:48407309-48407328 | None:intergenic | 40.0% | |
| TGAAGAAGGATGTAAGGTGA+AGG | - | chr7_1:48407310-48407329 | None:intergenic | 40.0% | |
| GTGGCTTATGCACCTAAAAA+TGG | - | chr7_1:48408162-48408181 | None:intergenic | 40.0% | |
| ACTTTGTATCCACTAAGCTG+TGG | + | chr7_1:48408464-48408483 | Msa1022300:CDS | 40.0% | |
| TTTGCAATACCACAGCTTAG+TGG | - | chr7_1:48408476-48408495 | None:intergenic | 40.0% | |
| ! | TGTGGTATTGCAAAAGCATG+TGG | + | chr7_1:48408482-48408501 | Msa1022300:CDS | 40.0% |
| AACTATGGAACAACTATGGC+TGG | + | chr7_1:48408698-48408717 | Msa1022300:CDS | 40.0% | |
| !! | GAACAACTATGGCTGGTTTA+AGG | + | chr7_1:48408705-48408724 | Msa1022300:CDS | 40.0% |
| ATCAGTCCTCTCGAAATAGT+CGG | + | chr7_1:48408796-48408815 | Msa1022300:intron | 40.0% | |
| GCAAGAGGTTCCTTAGAATT+GGG | - | chr7_1:48409140-48409159 | None:intergenic | 40.0% | |
| AGCAAGAGGTTCCTTAGAAT+TGG | - | chr7_1:48409141-48409160 | None:intergenic | 40.0% | |
| ! | CTGCATTGGTGAAGATCTAT+AGG | - | chr7_1:48409427-48409446 | None:intergenic | 40.0% |
| TGCATGAACTTTGTCTGCAT+TGG | - | chr7_1:48409441-48409460 | None:intergenic | 40.0% | |
| ! | ATGCAGTTAAGGCACTAAAC+AGG | + | chr7_1:48409456-48409475 | Msa1022300:CDS | 40.0% |
| GTTACTACCACTAGTACTTG+TGG | - | chr7_1:48409606-48409625 | None:intergenic | 40.0% | |
| AACTCAATGGCATATTCCGA+AGG | - | chr7_1:48409710-48409729 | None:intergenic | 40.0% | |
| TTCGGAATATGCCATTGAGT+TGG | + | chr7_1:48409709-48409728 | Msa1022300:CDS | 40.0% | |
| TATCTTGAGAGCCAACTCAA+TGG | - | chr7_1:48409723-48409742 | None:intergenic | 40.0% | |
| AGTTCTTTGTGGGTCAAGAT+TGG | - | chr7_1:48409747-48409766 | None:intergenic | 40.0% | |
| AGTGCAAGAAACATACAAGC+TGG | + | chr7_1:48410371-48410390 | Msa1022300:CDS | 40.0% | |
| GTGCAAGAAACATACAAGCT+GGG | + | chr7_1:48410372-48410391 | Msa1022300:CDS | 40.0% | |
| AAGGTTGTGGATGCTTTCTA+AGG | - | chr7_1:48410583-48410602 | None:intergenic | 40.0% | |
| AGAAGGATGTAAGGTGAAGG+GGG | - | chr7_1:48407307-48407326 | None:intergenic | 45.0% | |
| GGAATTGAGAACCATACCTC+TGG | + | chr7_1:48407603-48407622 | Msa1022300:intron | 45.0% | |
| CTCTCTCAAAACCAGAGGTA+TGG | - | chr7_1:48407617-48407636 | None:intergenic | 45.0% | |
| GTCTACTCTCTCAAAACCAG+AGG | - | chr7_1:48407622-48407641 | None:intergenic | 45.0% | |
| TCTGCTTGAAATGGAGTACG+AGG | + | chr7_1:48408288-48408307 | Msa1022300:exon | 45.0% | |
| CTGCTTGAAATGGAGTACGA+GGG | + | chr7_1:48408289-48408308 | Msa1022300:exon | 45.0% | |
| CTAAGACCGACTATTTCGAG+AGG | - | chr7_1:48408805-48408824 | None:intergenic | 45.0% | |
| TGAAGCCAGACCCAATTCTA+AGG | + | chr7_1:48409127-48409146 | Msa1022300:CDS | 45.0% | |
| AGGTTCCTTAGAATTGGGTC+TGG | - | chr7_1:48409135-48409154 | None:intergenic | 45.0% | |
| TATAAGGGAGGCTTAGCAAG+AGG | - | chr7_1:48409155-48409174 | None:intergenic | 45.0% | |
| TCTTGCTAAGCCTCCCTTAT+AGG | + | chr7_1:48409154-48409173 | Msa1022300:CDS | 45.0% | |
| ! | GTTAAGGCACTAAACAGGCT+TGG | + | chr7_1:48409461-48409480 | Msa1022300:CDS | 45.0% |
| TGGCAACACTTCACTTGGAT+TGG | - | chr7_1:48409666-48409685 | None:intergenic | 45.0% | |
| GTCTTTGGCAACACTTCACT+TGG | - | chr7_1:48409671-48409690 | None:intergenic | 45.0% | |
| ATACAAGCTGGGAAACGTGT+GGG | + | chr7_1:48410383-48410402 | Msa1022300:CDS | 45.0% | |
| AAGCATCCACAACCTTAGAG+AGG | + | chr7_1:48410587-48410606 | Msa1022300:CDS | 45.0% | |
| AGAGGCAGTGCCAGAATTAT+GGG | + | chr7_1:48410605-48410624 | Msa1022300:CDS | 45.0% | |
| !! | AACAAAAAAAAAATAATATT+TGG | + | chr7_1:48407582-48407601 | Msa1022300:intron | 5.0% |
| GAAGGGGGAGGAAAAATGAG+AGG | - | chr7_1:48407292-48407311 | None:intergenic | 50.0% | |
| TTGTGATGCTGCCTAAACCG+TGG | - | chr7_1:48410167-48410186 | None:intergenic | 50.0% | |
| CAAAGTTCGCAGTCAGATCG+TGG | + | chr7_1:48410273-48410292 | Msa1022300:intron | 50.0% | |
| CATACAAGCTGGGAAACGTG+TGG | + | chr7_1:48410382-48410401 | Msa1022300:CDS | 50.0% | |
| ATTCTGGCACTGCCTCTCTA+AGG | - | chr7_1:48410602-48410621 | None:intergenic | 50.0% | |
| GAGAGGCAGTGCCAGAATTA+TGG | + | chr7_1:48410604-48410623 | Msa1022300:CDS | 50.0% | |
| GGAGACATCTGTGACTGCTT+AGG | + | chr7_1:48410674-48410693 | Msa1022300:CDS | 50.0% | |
| GAGATATCCGTGCTACAGCA+CGG | + | chr7_1:48410721-48410740 | Msa1022300:three_prime_UTR | 50.0% | |
| AGATATCCGTGCTACAGCAC+GGG | + | chr7_1:48410722-48410741 | Msa1022300:three_prime_UTR | 50.0% | |
| AGGATGTAAGGTGAAGGGGG+AGG | - | chr7_1:48407304-48407323 | None:intergenic | 55.0% | |
| TGTGGGACTTGACACTGTGC+TGG | + | chr7_1:48410400-48410419 | Msa1022300:CDS | 55.0% | |
| !! | GCACTGCCTCTCTAAGGTTG+TGG | - | chr7_1:48410596-48410615 | None:intergenic | 55.0% |
| TAGCGCAGCTTCGTGCTACA+AGG | + | chr7_1:48410745-48410764 | Msa1022300:three_prime_UTR | 55.0% | |
| GCGCTACCCGTGCTGTAGCA+CGG | - | chr7_1:48410731-48410750 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 48407263 | 48411058 | 48407263 | ID=Msa1022300;Name=Msa1022300 |
| chr7_1 | mRNA | 48407263 | 48411058 | 48407263 | ID=Msa1022300-mRNA-1;Parent=Msa1022300;Name=Msa1022300-mRNA-1;_AED=0.11;_eAED=0.11;_QI=170|1|1|1|0.77|0.7|10|341|301 |
| chr7_1 | exon | 48407263 | 48407418 | 48407263 | ID=Msa1022300-mRNA-1:exon:9470;Parent=Msa1022300-mRNA-1 |
| chr7_1 | exon | 48408284 | 48408358 | 48408284 | ID=Msa1022300-mRNA-1:exon:9471;Parent=Msa1022300-mRNA-1 |
| chr7_1 | exon | 48408453 | 48408518 | 48408453 | ID=Msa1022300-mRNA-1:exon:9472;Parent=Msa1022300-mRNA-1 |
| chr7_1 | exon | 48408630 | 48408727 | 48408630 | ID=Msa1022300-mRNA-1:exon:9473;Parent=Msa1022300-mRNA-1 |
| chr7_1 | exon | 48408920 | 48408957 | 48408920 | ID=Msa1022300-mRNA-1:exon:9474;Parent=Msa1022300-mRNA-1 |
| chr7_1 | exon | 48409095 | 48409182 | 48409095 | ID=Msa1022300-mRNA-1:exon:9475;Parent=Msa1022300-mRNA-1 |
| chr7_1 | exon | 48409431 | 48409766 | 48409431 | ID=Msa1022300-mRNA-1:exon:9476;Parent=Msa1022300-mRNA-1 |
| chr7_1 | exon | 48410356 | 48410421 | 48410356 | ID=Msa1022300-mRNA-1:exon:9477;Parent=Msa1022300-mRNA-1 |
| chr7_1 | exon | 48410543 | 48410786 | 48410543 | ID=Msa1022300-mRNA-1:exon:9478;Parent=Msa1022300-mRNA-1 |
| chr7_1 | exon | 48410809 | 48411058 | 48410809 | ID=Msa1022300-mRNA-1:exon:9479;Parent=Msa1022300-mRNA-1 |
| chr7_1 | five_prime_UTR | 48407263 | 48407418 | 48407263 | ID=Msa1022300-mRNA-1:five_prime_utr;Parent=Msa1022300-mRNA-1 |
| chr7_1 | five_prime_UTR | 48408284 | 48408297 | 48408284 | ID=Msa1022300-mRNA-1:five_prime_utr;Parent=Msa1022300-mRNA-1 |
| chr7_1 | CDS | 48408298 | 48408358 | 48408298 | ID=Msa1022300-mRNA-1:cds;Parent=Msa1022300-mRNA-1 |
| chr7_1 | CDS | 48408453 | 48408518 | 48408453 | ID=Msa1022300-mRNA-1:cds;Parent=Msa1022300-mRNA-1 |
| chr7_1 | CDS | 48408630 | 48408727 | 48408630 | ID=Msa1022300-mRNA-1:cds;Parent=Msa1022300-mRNA-1 |
| chr7_1 | CDS | 48408920 | 48408957 | 48408920 | ID=Msa1022300-mRNA-1:cds;Parent=Msa1022300-mRNA-1 |
| chr7_1 | CDS | 48409095 | 48409182 | 48409095 | ID=Msa1022300-mRNA-1:cds;Parent=Msa1022300-mRNA-1 |
| chr7_1 | CDS | 48409431 | 48409766 | 48409431 | ID=Msa1022300-mRNA-1:cds;Parent=Msa1022300-mRNA-1 |
| chr7_1 | CDS | 48410356 | 48410421 | 48410356 | ID=Msa1022300-mRNA-1:cds;Parent=Msa1022300-mRNA-1 |
| chr7_1 | CDS | 48410543 | 48410695 | 48410543 | ID=Msa1022300-mRNA-1:cds;Parent=Msa1022300-mRNA-1 |
| chr7_1 | three_prime_UTR | 48410696 | 48410786 | 48410696 | ID=Msa1022300-mRNA-1:three_prime_utr;Parent=Msa1022300-mRNA-1 |
| chr7_1 | three_prime_UTR | 48410809 | 48411058 | 48410809 | ID=Msa1022300-mRNA-1:three_prime_utr;Parent=Msa1022300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
