Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1106570 | XP_013448876.1 | 97.342 | 301 | 8 | 0 | 1 | 301 | 1 | 301 | 0.0 | 614 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1106570 | sp|Q09893|YAI5_SCHPO | 39.535 | 129 | 74 | 3 | 18 | 143 | 8 | 135 | 6.36e-17 | 81.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1106570 | I3S857 | 97.342 | 301 | 8 | 0 | 1 | 301 | 1 | 301 | 0.0 | 614 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025060 | Msa1106570 | 0.821014 | 5.057799e-53 | -8.615850e-47 |
| Msa0025090 | Msa1106570 | 0.803819 | 2.905866e-49 | -8.615850e-47 |
| Msa0781800 | Msa1106570 | -0.803051 | 4.191836e-49 | -8.615850e-47 |
| Msa0815650 | Msa1106570 | -0.802842 | 4.630305e-49 | -8.615850e-47 |
| Msa0153290 | Msa1106570 | 0.830293 | 3.186037e-55 | -8.615850e-47 |
| Msa0387180 | Msa1106570 | -0.817422 | 3.325810e-52 | -8.615850e-47 |
| Msa0434840 | Msa1106570 | 0.826909 | 2.094102e-54 | -8.615850e-47 |
| Msa0474890 | Msa1106570 | 0.801417 | 9.094582e-49 | -8.615850e-47 |
| Msa0478750 | Msa1106570 | 0.829575 | 4.766782e-55 | -8.615850e-47 |
| Msa1022300 | Msa1106570 | 0.980820 | 4.141029e-151 | -8.615850e-47 |
| Msa1061190 | Msa1106570 | 0.959131 | 4.185108e-117 | -8.615850e-47 |
| Msa1106570 | Msa1192790 | 0.817591 | 3.045196e-52 | -8.615850e-47 |
| Msa1106570 | Msa1203210 | 0.834118 | 3.605678e-56 | -8.615850e-47 |
| Msa1106570 | Msa1235960 | 0.806578 | 7.686290e-50 | -8.615850e-47 |
| Msa1106570 | Msa1235990 | 0.811961 | 5.388595e-51 | -8.615850e-47 |
| Msa1106570 | Msa1258600 | -0.800688 | 1.281376e-48 | -8.615850e-47 |
| Msa1106570 | Msa1295840 | 0.825738 | 3.980140e-54 | -8.615850e-47 |
| Msa1106570 | Msa1304980 | -0.823264 | 1.520874e-53 | -8.615850e-47 |
| Msa1106570 | Msa1316090 | 0.804558 | 2.039693e-49 | -8.615850e-47 |
| Msa1106570 | Msa1327400 | 0.817435 | 3.302459e-52 | -8.615850e-47 |
| Msa1106570 | Msa1327420 | 0.815052 | 1.126507e-51 | -8.615850e-47 |
| Msa0522830 | Msa1106570 | 0.821027 | 5.021011e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1106570 | MtrunA17_Chr7g0238911 | 97.342 | 301 | 8 | 0 | 1 | 301 | 1 | 301 | 0.0 | 614 |
| Msa1106570 | MtrunA17_Chr4g0009921 | 84.488 | 303 | 38 | 4 | 1 | 301 | 1 | 296 | 0.0 | 506 |
| Msa1106570 | MtrunA17_Chr4g0009961 | 73.841 | 302 | 76 | 2 | 1 | 301 | 1 | 300 | 3.06e-162 | 453 |
| Msa1106570 | MtrunA17_Chr2g0328451 | 54.967 | 302 | 124 | 3 | 1 | 301 | 1 | 291 | 2.01e-112 | 327 |
| Msa1106570 | MtrunA17_Chr4g0031841 | 54.967 | 302 | 114 | 5 | 1 | 301 | 1 | 281 | 4.37e-112 | 325 |
| Msa1106570 | MtrunA17_Chr1g0193721 | 50.347 | 288 | 95 | 2 | 14 | 301 | 10 | 249 | 1.10e-98 | 290 |
| Msa1106570 | MtrunA17_Chr1g0205581 | 45.018 | 271 | 105 | 2 | 15 | 283 | 10 | 238 | 6.12e-78 | 238 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1106570 | AT5G02230.2 | 68.874 | 302 | 71 | 2 | 1 | 301 | 1 | 280 | 2.71e-143 | 405 |
| Msa1106570 | AT5G02230.1 | 68.874 | 302 | 71 | 2 | 1 | 301 | 1 | 280 | 2.71e-143 | 405 |
| Msa1106570 | AT5G02230.3 | 68.874 | 302 | 71 | 2 | 1 | 301 | 38 | 317 | 7.37e-143 | 405 |
| Msa1106570 | AT5G59480.4 | 56.187 | 299 | 110 | 2 | 1 | 297 | 1 | 280 | 2.83e-118 | 341 |
| Msa1106570 | AT5G59480.5 | 56.187 | 299 | 110 | 2 | 1 | 297 | 1 | 280 | 2.83e-118 | 341 |
| Msa1106570 | AT5G59480.3 | 56.187 | 299 | 110 | 2 | 1 | 297 | 1 | 280 | 2.83e-118 | 341 |
| Msa1106570 | AT5G59480.1 | 56.187 | 299 | 110 | 2 | 1 | 297 | 1 | 280 | 2.83e-118 | 341 |
| Msa1106570 | AT5G59480.2 | 56.187 | 299 | 109 | 3 | 1 | 297 | 1 | 279 | 3.94e-116 | 336 |
| Msa1106570 | AT5G59490.1 | 54.153 | 301 | 97 | 4 | 6 | 301 | 2 | 266 | 1.22e-102 | 301 |
| Msa1106570 | AT3G62040.1 | 51.538 | 260 | 75 | 5 | 45 | 301 | 1 | 212 | 4.53e-83 | 249 |
| Msa1106570 | AT2G32150.1 | 46.617 | 266 | 101 | 3 | 16 | 281 | 7 | 231 | 3.18e-82 | 249 |
| Msa1106570 | AT5G59490.2 | 55.061 | 247 | 75 | 3 | 6 | 252 | 2 | 212 | 8.29e-81 | 244 |
| Msa1106570 | AT2G32150.2 | 47.257 | 237 | 84 | 3 | 16 | 252 | 7 | 202 | 6.55e-69 | 214 |
| Msa1106570 | AT2G32150.3 | 46.083 | 217 | 76 | 3 | 16 | 232 | 7 | 182 | 1.43e-60 | 191 |
Find 87 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCAAATATTTGATATTAT+TGG | 0.138096 | 7_3:+46629555 | Msa1106570:CDS |
| GAACAACTATGGCTGGTTTA+AGG | 0.158157 | 7_3:+46628645 | Msa1106570:CDS |
| AAATATGATTGTCTTCTATT+TGG | 0.166756 | 7_3:+46628277 | Msa1106570:CDS |
| GGCCAATAATATCAAATATT+TGG | 0.189719 | 7_3:-46629557 | None:intergenic |
| TCCGAAGGTTTGCAAATAAT+TGG | 0.190370 | 7_3:-46629621 | None:intergenic |
| CCATTGATTTATAGATTATA+TGG | 0.220325 | 7_3:+46628556 | Msa1106570:intron |
| TCTTGCTAAGCCTCCCTTAT+AGG | 0.226837 | 7_3:+46629082 | Msa1106570:CDS |
| GAGAGGCAGTGCCAGAATTA+TGG | 0.244343 | 7_3:+46630532 | Msa1106570:CDS |
| AAACTTACTAGTTTCCTATA+AGG | 0.248483 | 7_3:-46629096 | None:intergenic |
| ATTTCAGATTCCCATAATTC+TGG | 0.252639 | 7_3:-46630543 | None:intergenic |
| TTGCAAATAATTGGTGTCTT+TGG | 0.268860 | 7_3:-46629612 | None:intergenic |
| ATAAGTACACAAGACCTAAA+AGG | 0.274516 | 7_3:-46630877 | None:intergenic |
| ATGAAGTAGTGAGAGGATTA+AGG | 0.282622 | 7_3:-46627317 | None:intergenic |
| AGCAAGAGGTTCCTTAGAAT+TGG | 0.290543 | 7_3:-46629066 | None:intergenic |
| GGTAAATCACAGAGAATTAA+AGG | 0.311037 | 7_3:+46630474 | Msa1106570:CDS |
| AGGAGCTACTTAATCAATTA+TGG | 0.315918 | 7_3:+46630694 | Msa1106570:three_prime_UTR |
| GCATGTGGACAAAATATTAA+AGG | 0.327206 | 7_3:+46628437 | Msa1106570:CDS |
| TAGTTCTTTCTCCTCTTAGA+AGG | 0.346591 | 7_3:-46630932 | None:intergenic |
| TGAAGCCAGACCCAATTCTA+AGG | 0.354368 | 7_3:+46629055 | Msa1106570:CDS |
| GAAGAAGATATTGAGTTTGT+AGG | 0.359501 | 7_3:+46629489 | Msa1106570:CDS |
| AACAACTATGGCTGGTTTAA+GGG | 0.377629 | 7_3:+46628646 | Msa1106570:CDS |
| TTGGATTGGATTGTGCAAAA+TGG | 0.380576 | 7_3:-46629578 | None:intergenic |
| AGAGGCAGTGCCAGAATTAT+GGG | 0.383627 | 7_3:+46630533 | Msa1106570:CDS |
| ATTCTGGCACTGCCTCTCTA+AGG | 0.393934 | 7_3:-46630527 | None:intergenic |
| AACTTACTAGTTTCCTATAA+GGG | 0.397060 | 7_3:-46629095 | None:intergenic |
| TTGTGGTCAATTTAGGCAAT+TGG | 0.398955 | 7_3:+46628833 | Msa1106570:intron |
| GTCTCCACAGCAAGCTTGTT+AGG | 0.401994 | 7_3:-46630585 | None:intergenic |
| ACCAATTATTTGCAAACCTT+CGG | 0.402223 | 7_3:+46629620 | Msa1106570:CDS |
| GCAAGAGGTTCCTTAGAATT+GGG | 0.408266 | 7_3:-46629065 | None:intergenic |
| CAAGAAAGAGTATTTATAGA+TGG | 0.413790 | 7_3:-46627200 | None:intergenic |
| GTCTTTGGCAACACTTCACT+TGG | 0.416899 | 7_3:-46629597 | None:intergenic |
| AAGGTTGTGGATGCTTTCTA+AGG | 0.423337 | 7_3:-46630508 | None:intergenic |
| TTTGCAATACCACAGCTTAG+TGG | 0.425245 | 7_3:-46628413 | None:intergenic |
| TGTGTACTTATGTTCATGTA+AGG | 0.427653 | 7_3:+46630889 | Msa1106570:three_prime_UTR |
| TGGCAACACTTCACTTGGAT+TGG | 0.430282 | 7_3:-46629592 | None:intergenic |
| AGTTCTTTGTGGGTCAAGAT+TGG | 0.432122 | 7_3:-46629673 | None:intergenic |
| AAGAAGGATGTAAGGTGAAG+GGG | 0.433249 | 7_3:-46627239 | None:intergenic |
| TCTGGCTTCAAATTCTCATA+TGG | 0.444951 | 7_3:-46629042 | None:intergenic |
| ATGCAGTTAAGGCACTAAAC+AGG | 0.445452 | 7_3:+46629385 | Msa1106570:CDS |
| TAGTGAGAGGATTAAGGAAA+AGG | 0.447647 | 7_3:-46627311 | None:intergenic |
| AGGTTCCTTAGAATTGGGTC+TGG | 0.448378 | 7_3:-46629060 | None:intergenic |
| AACTATGGAACAACTATGGC+TGG | 0.456420 | 7_3:+46628638 | Msa1106570:CDS |
| AGACAAAGTTCATGCAGTTA+AGG | 0.463592 | 7_3:+46629374 | Msa1106570:CDS |
| TAAGTACACAAGACCTAAAA+GGG | 0.465001 | 7_3:-46630876 | None:intergenic |
| ACTAGTACTTGTGGTATGAT+TGG | 0.466261 | 7_3:-46629523 | None:intergenic |
| TCTGAAATTAAATCAGAAGT+TGG | 0.466334 | 7_3:+46630558 | Msa1106570:CDS |
| AGAAACACTGTTCTTGTGGA+TGG | 0.473227 | 7_3:-46629460 | None:intergenic |
| GATTATATGGTTGAGAAGCT+TGG | 0.473494 | 7_3:+46628569 | Msa1106570:intron |
| GCACTGCCTCTCTAAGGTTG+TGG | 0.491454 | 7_3:-46630521 | None:intergenic |
| ATGGTATGAAGAAGGATGTA+AGG | 0.496973 | 7_3:-46627247 | None:intergenic |
| GGAGACATCTGTGACTGCTT+AGG | 0.506170 | 7_3:+46630602 | Msa1106570:CDS |
| TGCATGAACTTTGTCTGCAT+TGG | 0.507933 | 7_3:-46629367 | None:intergenic |
| AATAACTACATCTCAACAAA+GGG | 0.514379 | 7_3:-46630750 | None:intergenic |
| CATCAGAAACACTGTTCTTG+TGG | 0.523606 | 7_3:-46629464 | None:intergenic |
| GAAACACTGTTCTTGTGGAT+GGG | 0.532461 | 7_3:-46629459 | None:intergenic |
| GTTAAGGCACTAAACAGGCT+TGG | 0.537369 | 7_3:+46629390 | Msa1106570:CDS |
| AGAAGGATGTAAGGTGAAGG+GGG | 0.538955 | 7_3:-46627238 | None:intergenic |
| TTAGTACAATGGTATGAAGA+AGG | 0.543139 | 7_3:-46627255 | None:intergenic |
| AGTGCAAGAAACATACAAGC+TGG | 0.549461 | 7_3:+46630299 | Msa1106570:CDS |
| TTCGGAATATGCCATTGAGT+TGG | 0.549934 | 7_3:+46629638 | Msa1106570:CDS |
| CAAAAGAATGAAGTAGTGAG+AGG | 0.558798 | 7_3:-46627324 | None:intergenic |
| AAAAGGTTATGAAGAAGCAA+AGG | 0.560362 | 7_3:-46627294 | None:intergenic |
| AGCGCAGCTTCGTTGCTACA+AGG | 0.565890 | 7_3:+46630674 | Msa1106570:three_prime_UTR |
| TATCTTGAGAGCCAACTCAA+TGG | 0.573981 | 7_3:-46629649 | None:intergenic |
| GAAGAAGGATGTAAGGTGAA+GGG | 0.574006 | 7_3:-46627240 | None:intergenic |
| GCGCTACCCGTGCTGTAGCA+CGG | 0.577815 | 7_3:-46630656 | None:intergenic |
| TGAAGAAGGATGTAAGGTGA+AGG | 0.585221 | 7_3:-46627241 | None:intergenic |
| AACTCAATGGCATATTCCGA+AGG | 0.590798 | 7_3:-46629636 | None:intergenic |
| TGTGGGACTTGACACTGTGC+TGG | 0.591732 | 7_3:+46630328 | Msa1106570:CDS |
| CAATAACTACATCTCAACAA+AGG | 0.593676 | 7_3:-46630751 | None:intergenic |
| GAGATATCCGTGCTACAGCA+CGG | 0.605796 | 7_3:+46630649 | Msa1106570:three_prime_UTR |
| TTATCCTAACAAGCTTGCTG+TGG | 0.609017 | 7_3:+46630581 | Msa1106570:CDS |
| TTGACTATGATGAATATCAC+AGG | 0.610280 | 7_3:+46628864 | Msa1106570:CDS |
| AGATATCCGTGCTACAGCAC+GGG | 0.611898 | 7_3:+46630650 | Msa1106570:three_prime_UTR |
| TAGCAATAAGCTTAGTACAA+TGG | 0.612456 | 7_3:-46627266 | None:intergenic |
| TTACTAGTTTCCTATAAGGG+AGG | 0.612508 | 7_3:-46629092 | None:intergenic |
| GTGCAAGAAACATACAAGCT+GGG | 0.613254 | 7_3:+46630300 | Msa1106570:CDS |
| TATAAGGGAGGCTTAGCAAG+AGG | 0.623743 | 7_3:-46629080 | None:intergenic |
| GTTACTACCACTAGTACTTG+TGG | 0.630315 | 7_3:-46629532 | None:intergenic |
| CATACAAGCTGGGAAACGTG+TGG | 0.635233 | 7_3:+46630310 | Msa1106570:CDS |
| CTGCTTGAAATGGAGTACGA+GGG | 0.637705 | 7_3:+46628229 | Msa1106570:exon |
| ATACAAGCTGGGAAACGTGT+GGG | 0.639764 | 7_3:+46630311 | Msa1106570:CDS |
| AATCATACCACAAGTACTAG+TGG | 0.639846 | 7_3:+46629525 | Msa1106570:CDS |
| TCTGCTTGAAATGGAGTACG+AGG | 0.655487 | 7_3:+46628228 | Msa1106570:exon |
| ACTTTGTATCCACTAAGCTG+TGG | 0.665300 | 7_3:+46628404 | Msa1106570:CDS |
| AAGCATCCACAACCTTAGAG+AGG | 0.675174 | 7_3:+46630515 | Msa1106570:CDS |
| TGTGGTATTGCAAAAGCATG+TGG | 0.705500 | 7_3:+46628422 | Msa1106570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGATTAAACTATATATATA+AGG | - | chr7_3:46627660-46627679 | None:intergenic | 10.0% |
| !! | AAAGAAAAGAAAATAAAAAA+TGG | - | chr7_3:46627812-46627831 | None:intergenic | 10.0% |
| !! | TTATAATATTTATACACTTT+AGG | - | chr7_3:46629153-46629172 | None:intergenic | 10.0% |
| !!! | AATATTTTGTGATTATGTTT+AGG | + | chr7_3:46627633-46627652 | Msa1106570:intron | 15.0% |
| !! | TTTAATCAAGAAACTTTAAA+TGG | + | chr7_3:46627671-46627690 | Msa1106570:intron | 15.0% |
| !! | TTAATCAAGAAACTTTAAAT+GGG | + | chr7_3:46627672-46627691 | Msa1106570:intron | 15.0% |
| !! | TGTTCAAAGAATTATAATAA+TGG | + | chr7_3:46627743-46627762 | Msa1106570:intron | 15.0% |
| !! | GTTCAAAGAATTATAATAAT+GGG | + | chr7_3:46627744-46627763 | Msa1106570:intron | 15.0% |
| !! | TTATTTCCTTAATGATTTAA+AGG | + | chr7_3:46627784-46627803 | Msa1106570:intron | 15.0% |
| !! | TATTTCCTTAATGATTTAAA+GGG | + | chr7_3:46627785-46627804 | Msa1106570:intron | 15.0% |
| !!! | AACTTATGTTTTTTTTTTTG+TGG | + | chr7_3:46628816-46628835 | Msa1106570:intron | 15.0% |
| !! | TTCCAAATATTTGATATTAT+TGG | + | chr7_3:46629555-46629574 | Msa1106570:CDS | 15.0% |
| !!! | TTTTAATAATCTGTAACAAA+CGG | - | chr7_3:46629768-46629787 | None:intergenic | 15.0% |
| !! | TTACTTCCTATAATAAAAAT+CGG | + | chr7_3:46629859-46629878 | Msa1106570:intron | 15.0% |
| !!! | TAAAAACCGATTTTTATTAT+AGG | - | chr7_3:46629868-46629887 | None:intergenic | 15.0% |
| !! | TAATGACAAAAAAACAAATT+AGG | - | chr7_3:46630252-46630271 | None:intergenic | 15.0% |
| !! | ATAACATAATGTCAATAATT+TGG | - | chr7_3:46630395-46630414 | None:intergenic | 15.0% |
| !!! | AAATATTAAATTTCCCTTTT+AGG | + | chr7_3:46630863-46630882 | Msa1106570:three_prime_UTR | 15.0% |
| !!! | GAGTAATTTTGAGAATTAAA+AGG | - | chr7_3:46627469-46627488 | None:intergenic | 20.0% |
| !! | TTAATTCTCAAAATTACTCA+TGG | + | chr7_3:46627470-46627489 | Msa1106570:intron | 20.0% |
| !!! | TCATGGATTAAATAAATGTT+TGG | + | chr7_3:46627487-46627506 | Msa1106570:intron | 20.0% |
| !! | TGCTTAGTTATAATAATTGA+AGG | + | chr7_3:46627836-46627855 | Msa1106570:intron | 20.0% |
| !! | AAGCATAATAATCATCATAA+AGG | - | chr7_3:46628043-46628062 | None:intergenic | 20.0% |
| !!! | GTCTTTTTGAAATATTGATT+TGG | - | chr7_3:46628080-46628099 | None:intergenic | 20.0% |
| !!! | ATTTCAAAAAGACCATTTTT+AGG | + | chr7_3:46628087-46628106 | Msa1106570:intron | 20.0% |
| !! | TTTCAATTTACATATCTTAG+TGG | - | chr7_3:46628121-46628140 | None:intergenic | 20.0% |
| !!! | ATGAAACCCTATATAAATTT+TGG | + | chr7_3:46628154-46628173 | Msa1106570:intron | 20.0% |
| !! | AACCTACCAAAATTTATATA+GGG | - | chr7_3:46628163-46628182 | None:intergenic | 20.0% |
| !! | TAACCTACCAAAATTTATAT+AGG | - | chr7_3:46628164-46628183 | None:intergenic | 20.0% |
| !!! | CTCACTTTTTTTATTTGTTA+AGG | + | chr7_3:46628202-46628221 | Msa1106570:intron | 20.0% |
| !! | AAATATGATTGTCTTCTATT+TGG | + | chr7_3:46628277-46628296 | Msa1106570:CDS | 20.0% |
| !! | CCATATAATCTATAAATCAA+TGG | - | chr7_3:46628559-46628578 | None:intergenic | 20.0% |
| !!! | CCATTGATTTATAGATTATA+TGG | + | chr7_3:46628556-46628575 | Msa1106570:intron | 20.0% |
| !!! | TTTTTTTTTGTGGTCAATTT+AGG | + | chr7_3:46628826-46628845 | Msa1106570:intron | 20.0% |
| !!! | ATTTTAATGATGAGTGTATT+AGG | - | chr7_3:46629712-46629731 | None:intergenic | 20.0% |
| !! | TATATAACAAATGTTAGCAA+TGG | - | chr7_3:46630358-46630377 | None:intergenic | 20.0% |
| !! | TGTAACAATCAAATAATTAG+AGG | - | chr7_3:46630436-46630455 | None:intergenic | 20.0% |
| !!! | GAAGGTATGTAAAAAATTAT+TGG | - | chr7_3:46630917-46630936 | None:intergenic | 20.0% |
| !!! | CAAGAAAGAGTATTTATAGA+TGG | - | chr7_3:46627203-46627222 | None:intergenic | 25.0% |
| ! | AATGAATCATTATGAACAAG+AGG | - | chr7_3:46627396-46627415 | None:intergenic | 25.0% |
| !!! | AAACTATGTGTGTTATTTTG+AGG | + | chr7_3:46627438-46627457 | Msa1106570:intron | 25.0% |
| !! | ACATGTTTGAACTTTTTACT+TGG | + | chr7_3:46627596-46627615 | Msa1106570:intron | 25.0% |
| !! | GAATTATAATAATGGGAGTA+TGG | + | chr7_3:46627751-46627770 | Msa1106570:intron | 25.0% |
| !! | TTTTGTCCTGTTTACAAAAA+AGG | + | chr7_3:46627885-46627904 | Msa1106570:intron | 25.0% |
| !!! | ACTTTTGTTTTGATTTTGAG+TGG | - | chr7_3:46627972-46627991 | None:intergenic | 25.0% |
| !!! | AACCCTATATAAATTTTGGT+AGG | + | chr7_3:46628158-46628177 | Msa1106570:intron | 25.0% |
| ! | CACATTACTAAGAACATTAT+TGG | - | chr7_3:46628477-46628496 | None:intergenic | 25.0% |
| !! | TTTGATGCATGTAATTTTGT+TGG | + | chr7_3:46628507-46628526 | Msa1106570:intron | 25.0% |
| !! | ATAGTTTTTGTAAAGATGGT+TGG | - | chr7_3:46628624-46628643 | None:intergenic | 25.0% |
| ! | AACCATCTTTACAAAAACTA+TGG | + | chr7_3:46628623-46628642 | Msa1106570:CDS | 25.0% |
| !! | TTCCATAGTTTTTGTAAAGA+TGG | - | chr7_3:46628628-46628647 | None:intergenic | 25.0% |
| ! | TAGAAGTGATGTAGTATAAA+AGG | - | chr7_3:46628911-46628930 | None:intergenic | 25.0% |
| !!! | TGTTAATACAGTTTTGTTCA+TGG | + | chr7_3:46629012-46629031 | Msa1106570:intron | 25.0% |
| !! | AACTTACTAGTTTCCTATAA+GGG | - | chr7_3:46629098-46629117 | None:intergenic | 25.0% |
| !! | AAACTTACTAGTTTCCTATA+AGG | - | chr7_3:46629099-46629118 | None:intergenic | 25.0% |
| ! | GGCCAATAATATCAAATATT+TGG | - | chr7_3:46629560-46629579 | None:intergenic | 25.0% |
| ! | CGTGTGATTACAAATATTAA+GGG | - | chr7_3:46630119-46630138 | None:intergenic | 25.0% |
| ! | ACGTGTGATTACAAATATTA+AGG | - | chr7_3:46630120-46630139 | None:intergenic | 25.0% |
| !! | TTTGTAATCACACGTAATTT+TGG | + | chr7_3:46630125-46630144 | Msa1106570:intron | 25.0% |
| !!! | CTGCAAACTTTGAAATTTTT+AGG | - | chr7_3:46630194-46630213 | None:intergenic | 25.0% |
| !! | TCATTTTCAGTTATTCTTTG+AGG | + | chr7_3:46630274-46630293 | Msa1106570:intron | 25.0% |
| ! | TGTTACACATCATTGTATAT+AGG | + | chr7_3:46630449-46630468 | Msa1106570:intron | 25.0% |
| !! | TCTGAAATTAAATCAGAAGT+TGG | + | chr7_3:46630558-46630577 | Msa1106570:CDS | 25.0% |
| ! | AATAACTACATCTCAACAAA+GGG | - | chr7_3:46630753-46630772 | None:intergenic | 25.0% |
| !!! | TTTTTTACATACCTTCTAAG+AGG | + | chr7_3:46630921-46630940 | Msa1106570:three_prime_UTR | 25.0% |
| TTAGTACAATGGTATGAAGA+AGG | - | chr7_3:46627258-46627277 | None:intergenic | 30.0% | |
| TAGCAATAAGCTTAGTACAA+TGG | - | chr7_3:46627269-46627288 | None:intergenic | 30.0% | |
| AAAAGGTTATGAAGAAGCAA+AGG | - | chr7_3:46627297-46627316 | None:intergenic | 30.0% | |
| !! | CTACTTCATTCTTTTGTTTC+TGG | + | chr7_3:46627331-46627350 | Msa1106570:five_prime_UTR | 30.0% |
| GAAGAAAGAATTGAAGTCAT+TGG | - | chr7_3:46627361-46627380 | None:intergenic | 30.0% | |
| TCATGGGATATGAAAACTTT+AGG | - | chr7_3:46627716-46627735 | None:intergenic | 30.0% | |
| CTTTGAACAAAGTTCATCAT+GGG | - | chr7_3:46627732-46627751 | None:intergenic | 30.0% | |
| TCTTTGAACAAAGTTCATCA+TGG | - | chr7_3:46627733-46627752 | None:intergenic | 30.0% | |
| ATGGACCCTTTAAATCATTA+AGG | - | chr7_3:46627793-46627812 | None:intergenic | 30.0% | |
| TCACAATCATTGAAAGAGAA+TGG | - | chr7_3:46627944-46627963 | None:intergenic | 30.0% | |
| !! | AACAAAAGTTTTATCCCTAG+TGG | + | chr7_3:46627983-46628002 | Msa1106570:intron | 30.0% |
| ! | TTAAGGTTTTCTGCTTGAAA+TGG | + | chr7_3:46628219-46628238 | Msa1106570:intron | 30.0% |
| GCATGTGGACAAAATATTAA+AGG | + | chr7_3:46628437-46628456 | Msa1106570:CDS | 30.0% | |
| TGGTACATACAAAACAACAT+TGG | - | chr7_3:46628539-46628558 | None:intergenic | 30.0% | |
| CAAAAACTATGGAACAACTA+TGG | + | chr7_3:46628634-46628653 | Msa1106570:CDS | 30.0% | |
| ATTTAAGCTGAAATTGTCGA+TGG | + | chr7_3:46628701-46628720 | Msa1106570:intron | 30.0% | |
| TTTAAGCTGAAATTGTCGAT+GGG | + | chr7_3:46628702-46628721 | Msa1106570:intron | 30.0% | |
| AGAAATTAAGCTGAAATCAC+AGG | + | chr7_3:46628785-46628804 | Msa1106570:intron | 30.0% | |
| TTGACTATGATGAATATCAC+AGG | + | chr7_3:46628864-46628883 | Msa1106570:CDS | 30.0% | |
| AGGTATTAAATTTGAGAGTG+TGG | - | chr7_3:46629133-46629152 | None:intergenic | 30.0% | |
| GAAGAAGATATTGAGTTTGT+AGG | + | chr7_3:46629489-46629508 | Msa1106570:CDS | 30.0% | |
| ! | TTGCAAATAATTGGTGTCTT+TGG | - | chr7_3:46629615-46629634 | None:intergenic | 30.0% |
| ACCAATTATTTGCAAACCTT+CGG | + | chr7_3:46629620-46629639 | Msa1106570:CDS | 30.0% | |
| ! | GTTTTCTTACAGTTCTTTGT+GGG | - | chr7_3:46629686-46629705 | None:intergenic | 30.0% |
| ! | TGTTTTCTTACAGTTCTTTG+TGG | - | chr7_3:46629687-46629706 | None:intergenic | 30.0% |
| ATTAGAGGCTCATATTTGTT+TGG | - | chr7_3:46630421-46630440 | None:intergenic | 30.0% | |
| ACACATCATTGTATATAGGT+TGG | + | chr7_3:46630453-46630472 | Msa1106570:intron | 30.0% | |
| GGTAAATCACAGAGAATTAA+AGG | + | chr7_3:46630474-46630493 | Msa1106570:CDS | 30.0% | |
| ATTTCAGATTCCCATAATTC+TGG | - | chr7_3:46630546-46630565 | None:intergenic | 30.0% | |
| AGGAGCTACTTAATCAATTA+TGG | + | chr7_3:46630694-46630713 | Msa1106570:three_prime_UTR | 30.0% | |
| CAATAACTACATCTCAACAA+AGG | - | chr7_3:46630754-46630773 | None:intergenic | 30.0% | |
| TAAGTACACAAGACCTAAAA+GGG | - | chr7_3:46630879-46630898 | None:intergenic | 30.0% | |
| ATAAGTACACAAGACCTAAA+AGG | - | chr7_3:46630880-46630899 | None:intergenic | 30.0% | |
| TGTGTACTTATGTTCATGTA+AGG | + | chr7_3:46630889-46630908 | Msa1106570:three_prime_UTR | 30.0% | |
| ATGGTATGAAGAAGGATGTA+AGG | - | chr7_3:46627250-46627269 | None:intergenic | 35.0% | |
| TAGTGAGAGGATTAAGGAAA+AGG | - | chr7_3:46627314-46627333 | None:intergenic | 35.0% | |
| ATGAAGTAGTGAGAGGATTA+AGG | - | chr7_3:46627320-46627339 | None:intergenic | 35.0% | |
| CAAAAGAATGAAGTAGTGAG+AGG | - | chr7_3:46627327-46627346 | None:intergenic | 35.0% | |
| GAGAGTAGACAAGTTTACTA+TGG | + | chr7_3:46627564-46627583 | Msa1106570:intron | 35.0% | |
| !!! | CAGTGACCTTTTTTGTAAAC+AGG | - | chr7_3:46627894-46627913 | None:intergenic | 35.0% |
| GATGCTAATACAATCCACTA+GGG | - | chr7_3:46628000-46628019 | None:intergenic | 35.0% | |
| AGATGCTAATACAATCCACT+AGG | - | chr7_3:46628001-46628020 | None:intergenic | 35.0% | |
| GATTATATGGTTGAGAAGCT+TGG | + | chr7_3:46628569-46628588 | Msa1106570:intron | 35.0% | |
| !! | AACAACTATGGCTGGTTTAA+GGG | + | chr7_3:46628646-46628665 | Msa1106570:CDS | 35.0% |
| ATCAGTCCTCTCAAATTAGT+CGG | + | chr7_3:46628725-46628744 | Msa1106570:intron | 35.0% | |
| TTGTGGTCAATTTAGGCAAT+TGG | + | chr7_3:46628833-46628852 | Msa1106570:intron | 35.0% | |
| ! | TCTGGCTTCAAATTCTCATA+TGG | - | chr7_3:46629045-46629064 | None:intergenic | 35.0% |
| ! | TTACTAGTTTCCTATAAGGG+AGG | - | chr7_3:46629095-46629114 | None:intergenic | 35.0% |
| AGACAAAGTTCATGCAGTTA+AGG | + | chr7_3:46629374-46629393 | Msa1106570:CDS | 35.0% | |
| !!! | GGACTAGAAGATTGTTTTGA+AGG | + | chr7_3:46629411-46629430 | Msa1106570:CDS | 35.0% |
| ACTAGTACTTGTGGTATGAT+TGG | - | chr7_3:46629526-46629545 | None:intergenic | 35.0% | |
| AATCATACCACAAGTACTAG+TGG | + | chr7_3:46629525-46629544 | Msa1106570:CDS | 35.0% | |
| ! | TTGGATTGGATTGTGCAAAA+TGG | - | chr7_3:46629581-46629600 | None:intergenic | 35.0% |
| TCCGAAGGTTTGCAAATAAT+TGG | - | chr7_3:46629624-46629643 | None:intergenic | 35.0% | |
| CCGTGGCTACAAAATTATAA+CGG | - | chr7_3:46630079-46630098 | None:intergenic | 35.0% | |
| ! | CCGTTATAATTTTGTAGCCA+CGG | + | chr7_3:46630076-46630095 | Msa1106570:intron | 35.0% |
| ! | TAATTTTGTAGCCACGGTTT+AGG | + | chr7_3:46630082-46630101 | Msa1106570:intron | 35.0% |
| TAGTTCTTTCTCCTCTTAGA+AGG | - | chr7_3:46630935-46630954 | None:intergenic | 35.0% | |
| AAGAAGGATGTAAGGTGAAG+GGG | - | chr7_3:46627242-46627261 | None:intergenic | 40.0% | |
| GAAGAAGGATGTAAGGTGAA+GGG | - | chr7_3:46627243-46627262 | None:intergenic | 40.0% | |
| TGAAGAAGGATGTAAGGTGA+AGG | - | chr7_3:46627244-46627263 | None:intergenic | 40.0% | |
| GTGGCTTATGCACCTAAAAA+TGG | - | chr7_3:46628102-46628121 | None:intergenic | 40.0% | |
| ACTTTGTATCCACTAAGCTG+TGG | + | chr7_3:46628404-46628423 | Msa1106570:CDS | 40.0% | |
| TTTGCAATACCACAGCTTAG+TGG | - | chr7_3:46628416-46628435 | None:intergenic | 40.0% | |
| ! | TGTGGTATTGCAAAAGCATG+TGG | + | chr7_3:46628422-46628441 | Msa1106570:CDS | 40.0% |
| AACTATGGAACAACTATGGC+TGG | + | chr7_3:46628638-46628657 | Msa1106570:CDS | 40.0% | |
| !! | GAACAACTATGGCTGGTTTA+AGG | + | chr7_3:46628645-46628664 | Msa1106570:CDS | 40.0% |
| CTAAGACCGACTAATTTGAG+AGG | - | chr7_3:46628734-46628753 | None:intergenic | 40.0% | |
| GCAAGAGGTTCCTTAGAATT+GGG | - | chr7_3:46629068-46629087 | None:intergenic | 40.0% | |
| AGCAAGAGGTTCCTTAGAAT+TGG | - | chr7_3:46629069-46629088 | None:intergenic | 40.0% | |
| ! | CTGCATTGGTGAAGATCTAT+AGG | - | chr7_3:46629356-46629375 | None:intergenic | 40.0% |
| TGCATGAACTTTGTCTGCAT+TGG | - | chr7_3:46629370-46629389 | None:intergenic | 40.0% | |
| ! | ATGCAGTTAAGGCACTAAAC+AGG | + | chr7_3:46629385-46629404 | Msa1106570:CDS | 40.0% |
| GAAACACTGTTCTTGTGGAT+GGG | - | chr7_3:46629462-46629481 | None:intergenic | 40.0% | |
| AGAAACACTGTTCTTGTGGA+TGG | - | chr7_3:46629463-46629482 | None:intergenic | 40.0% | |
| CATCAGAAACACTGTTCTTG+TGG | - | chr7_3:46629467-46629486 | None:intergenic | 40.0% | |
| GTTACTACCACTAGTACTTG+TGG | - | chr7_3:46629535-46629554 | None:intergenic | 40.0% | |
| AACTCAATGGCATATTCCGA+AGG | - | chr7_3:46629639-46629658 | None:intergenic | 40.0% | |
| TTCGGAATATGCCATTGAGT+TGG | + | chr7_3:46629638-46629657 | Msa1106570:CDS | 40.0% | |
| TATCTTGAGAGCCAACTCAA+TGG | - | chr7_3:46629652-46629671 | None:intergenic | 40.0% | |
| AGTTCTTTGTGGGTCAAGAT+TGG | - | chr7_3:46629676-46629695 | None:intergenic | 40.0% | |
| AGTGCAAGAAACATACAAGC+TGG | + | chr7_3:46630299-46630318 | Msa1106570:CDS | 40.0% | |
| GTGCAAGAAACATACAAGCT+GGG | + | chr7_3:46630300-46630319 | Msa1106570:CDS | 40.0% | |
| AAGGTTGTGGATGCTTTCTA+AGG | - | chr7_3:46630511-46630530 | None:intergenic | 40.0% | |
| !! | TTATCCTAACAAGCTTGCTG+TGG | + | chr7_3:46630581-46630600 | Msa1106570:CDS | 40.0% |
| AGAAGGATGTAAGGTGAAGG+GGG | - | chr7_3:46627241-46627260 | None:intergenic | 45.0% | |
| GGAATTGAGAACCATACCTC+TGG | + | chr7_3:46627535-46627554 | Msa1106570:intron | 45.0% | |
| CTCTCTCAAAACCAGAGGTA+TGG | - | chr7_3:46627549-46627568 | None:intergenic | 45.0% | |
| GTCTACTCTCTCAAAACCAG+AGG | - | chr7_3:46627554-46627573 | None:intergenic | 45.0% | |
| TCTGCTTGAAATGGAGTACG+AGG | + | chr7_3:46628228-46628247 | Msa1106570:exon | 45.0% | |
| CTGCTTGAAATGGAGTACGA+GGG | + | chr7_3:46628229-46628248 | Msa1106570:exon | 45.0% | |
| TGAAGCCAGACCCAATTCTA+AGG | + | chr7_3:46629055-46629074 | Msa1106570:CDS | 45.0% | |
| AGGTTCCTTAGAATTGGGTC+TGG | - | chr7_3:46629063-46629082 | None:intergenic | 45.0% | |
| TATAAGGGAGGCTTAGCAAG+AGG | - | chr7_3:46629083-46629102 | None:intergenic | 45.0% | |
| TCTTGCTAAGCCTCCCTTAT+AGG | + | chr7_3:46629082-46629101 | Msa1106570:CDS | 45.0% | |
| ! | GTTAAGGCACTAAACAGGCT+TGG | + | chr7_3:46629390-46629409 | Msa1106570:CDS | 45.0% |
| TGGCAACACTTCACTTGGAT+TGG | - | chr7_3:46629595-46629614 | None:intergenic | 45.0% | |
| GTCTTTGGCAACACTTCACT+TGG | - | chr7_3:46629600-46629619 | None:intergenic | 45.0% | |
| CAAAGTTTGCAGTCAGATCG+TGG | + | chr7_3:46630202-46630221 | Msa1106570:intron | 45.0% | |
| ATACAAGCTGGGAAACGTGT+GGG | + | chr7_3:46630311-46630330 | Msa1106570:CDS | 45.0% | |
| AAGCATCCACAACCTTAGAG+AGG | + | chr7_3:46630515-46630534 | Msa1106570:CDS | 45.0% | |
| AGAGGCAGTGCCAGAATTAT+GGG | + | chr7_3:46630533-46630552 | Msa1106570:CDS | 45.0% | |
| !! | TAACAAAAAAAAATAATATT+TGG | + | chr7_3:46627514-46627533 | Msa1106570:intron | 5.0% |
| GAAGGGGGAGGAAAAATGAG+AGG | - | chr7_3:46627226-46627245 | None:intergenic | 50.0% | |
| TTGTGATGCTGCCTAAACCG+TGG | - | chr7_3:46630096-46630115 | None:intergenic | 50.0% | |
| CATACAAGCTGGGAAACGTG+TGG | + | chr7_3:46630310-46630329 | Msa1106570:CDS | 50.0% | |
| ATTCTGGCACTGCCTCTCTA+AGG | - | chr7_3:46630530-46630549 | None:intergenic | 50.0% | |
| GAGAGGCAGTGCCAGAATTA+TGG | + | chr7_3:46630532-46630551 | Msa1106570:CDS | 50.0% | |
| ! | GTCTCCACAGCAAGCTTGTT+AGG | - | chr7_3:46630588-46630607 | None:intergenic | 50.0% |
| GGAGACATCTGTGACTGCTT+AGG | + | chr7_3:46630602-46630621 | Msa1106570:CDS | 50.0% | |
| GAGATATCCGTGCTACAGCA+CGG | + | chr7_3:46630649-46630668 | Msa1106570:three_prime_UTR | 50.0% | |
| AGATATCCGTGCTACAGCAC+GGG | + | chr7_3:46630650-46630669 | Msa1106570:three_prime_UTR | 50.0% | |
| AGGATGTAAGGTGAAGGGGG+AGG | - | chr7_3:46627238-46627257 | None:intergenic | 55.0% | |
| TGTGGGACTTGACACTGTGC+TGG | + | chr7_3:46630328-46630347 | Msa1106570:CDS | 55.0% | |
| !! | GCACTGCCTCTCTAAGGTTG+TGG | - | chr7_3:46630524-46630543 | None:intergenic | 55.0% |
| AGCGCAGCTTCGTTGCTACA+AGG | + | chr7_3:46630674-46630693 | Msa1106570:three_prime_UTR | 55.0% | |
| GCGCTACCCGTGCTGTAGCA+CGG | - | chr7_3:46630659-46630678 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 46627197 | 46630970 | 46627197 | ID=Msa1106570;Name=Msa1106570 |
| chr7_3 | mRNA | 46627197 | 46630970 | 46627197 | ID=Msa1106570-mRNA-1;Parent=Msa1106570;Name=Msa1106570-mRNA-1;_AED=0.08;_eAED=0.08;_QI=170|1|1|1|0.87|0.77|9|347|301 |
| chr7_3 | exon | 46627197 | 46627352 | 46627197 | ID=Msa1106570-mRNA-1:exon:9558;Parent=Msa1106570-mRNA-1 |
| chr7_3 | exon | 46628224 | 46628298 | 46628224 | ID=Msa1106570-mRNA-1:exon:9559;Parent=Msa1106570-mRNA-1 |
| chr7_3 | exon | 46628393 | 46628458 | 46628393 | ID=Msa1106570-mRNA-1:exon:9560;Parent=Msa1106570-mRNA-1 |
| chr7_3 | exon | 46628570 | 46628667 | 46628570 | ID=Msa1106570-mRNA-1:exon:9561;Parent=Msa1106570-mRNA-1 |
| chr7_3 | exon | 46628848 | 46628885 | 46628848 | ID=Msa1106570-mRNA-1:exon:9562;Parent=Msa1106570-mRNA-1 |
| chr7_3 | exon | 46629023 | 46629110 | 46629023 | ID=Msa1106570-mRNA-1:exon:9563;Parent=Msa1106570-mRNA-1 |
| chr7_3 | exon | 46629360 | 46629695 | 46629360 | ID=Msa1106570-mRNA-1:exon:9564;Parent=Msa1106570-mRNA-1 |
| chr7_3 | exon | 46630284 | 46630349 | 46630284 | ID=Msa1106570-mRNA-1:exon:9565;Parent=Msa1106570-mRNA-1 |
| chr7_3 | exon | 46630471 | 46630970 | 46630471 | ID=Msa1106570-mRNA-1:exon:9566;Parent=Msa1106570-mRNA-1 |
| chr7_3 | five_prime_UTR | 46627197 | 46627352 | 46627197 | ID=Msa1106570-mRNA-1:five_prime_utr;Parent=Msa1106570-mRNA-1 |
| chr7_3 | five_prime_UTR | 46628224 | 46628237 | 46628224 | ID=Msa1106570-mRNA-1:five_prime_utr;Parent=Msa1106570-mRNA-1 |
| chr7_3 | CDS | 46628238 | 46628298 | 46628238 | ID=Msa1106570-mRNA-1:cds;Parent=Msa1106570-mRNA-1 |
| chr7_3 | CDS | 46628393 | 46628458 | 46628393 | ID=Msa1106570-mRNA-1:cds;Parent=Msa1106570-mRNA-1 |
| chr7_3 | CDS | 46628570 | 46628667 | 46628570 | ID=Msa1106570-mRNA-1:cds;Parent=Msa1106570-mRNA-1 |
| chr7_3 | CDS | 46628848 | 46628885 | 46628848 | ID=Msa1106570-mRNA-1:cds;Parent=Msa1106570-mRNA-1 |
| chr7_3 | CDS | 46629023 | 46629110 | 46629023 | ID=Msa1106570-mRNA-1:cds;Parent=Msa1106570-mRNA-1 |
| chr7_3 | CDS | 46629360 | 46629695 | 46629360 | ID=Msa1106570-mRNA-1:cds;Parent=Msa1106570-mRNA-1 |
| chr7_3 | CDS | 46630284 | 46630349 | 46630284 | ID=Msa1106570-mRNA-1:cds;Parent=Msa1106570-mRNA-1 |
| chr7_3 | CDS | 46630471 | 46630623 | 46630471 | ID=Msa1106570-mRNA-1:cds;Parent=Msa1106570-mRNA-1 |
| chr7_3 | three_prime_UTR | 46630624 | 46630970 | 46630624 | ID=Msa1106570-mRNA-1:three_prime_utr;Parent=Msa1106570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
