Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1063080 | TKY65857.1 | 44.522 | 429 | 193 | 11 | 4 | 403 | 3 | 415 | 4.21e-105 | 330 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1063080 | sp|Q9SD53|Y3720_ARATH | 24.873 | 394 | 245 | 15 | 35 | 405 | 51 | 416 | 5.53e-18 | 89.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1063080 | A0A072TJ82 | 44.676 | 432 | 194 | 9 | 1 | 406 | 14 | 426 | 4.08e-103 | 324 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0810270 | Msa1063080 | 0.805131 | 1.548128e-49 | -8.615850e-47 |
| Msa1063080 | Msa1177560 | 0.817167 | 3.795664e-52 | -8.615850e-47 |
| Msa1063080 | Msa1178100 | 0.805406 | 1.355886e-49 | -8.615850e-47 |
| Msa0914270 | Msa1063080 | 0.812623 | 3.863488e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1063080 | MtrunA17_Chr3g0091831 | 44.676 | 432 | 194 | 9 | 1 | 406 | 14 | 426 | 7.86e-107 | 324 |
| Msa1063080 | MtrunA17_Chr3g0107251 | 44.731 | 427 | 207 | 10 | 1 | 406 | 1 | 419 | 2.44e-106 | 323 |
| Msa1063080 | MtrunA17_Chr7g0242181 | 35.908 | 479 | 216 | 15 | 11 | 407 | 17 | 486 | 6.48e-78 | 251 |
| Msa1063080 | MtrunA17_Chr7g0242011 | 34.773 | 463 | 230 | 14 | 10 | 407 | 43 | 498 | 3.28e-73 | 239 |
| Msa1063080 | MtrunA17_Chr1g0170351 | 32.297 | 418 | 223 | 12 | 18 | 403 | 15 | 404 | 3.23e-56 | 192 |
| Msa1063080 | MtrunA17_Chr7g0241951 | 30.169 | 474 | 243 | 15 | 5 | 399 | 2 | 466 | 4.84e-50 | 177 |
| Msa1063080 | MtrunA17_Chr7g0241791 | 31.616 | 427 | 219 | 15 | 28 | 405 | 20 | 422 | 1.10e-47 | 170 |
| Msa1063080 | MtrunA17_Chr7g0242151 | 46.927 | 179 | 91 | 3 | 11 | 187 | 10 | 186 | 5.96e-44 | 161 |
| Msa1063080 | MtrunA17_Chr7g0242151 | 45.113 | 133 | 68 | 1 | 280 | 407 | 362 | 494 | 3.99e-23 | 101 |
| Msa1063080 | MtrunA17_Chr7g0242091 | 43.158 | 190 | 103 | 3 | 3 | 187 | 27 | 216 | 3.71e-42 | 156 |
| Msa1063080 | MtrunA17_Chr7g0242091 | 43.411 | 129 | 72 | 1 | 280 | 407 | 384 | 512 | 7.02e-24 | 104 |
| Msa1063080 | MtrunA17_Chr7g0242071 | 47.191 | 178 | 88 | 3 | 11 | 187 | 10 | 182 | 4.02e-42 | 156 |
| Msa1063080 | MtrunA17_Chr7g0242071 | 39.855 | 138 | 70 | 2 | 280 | 404 | 348 | 485 | 3.24e-23 | 102 |
| Msa1063080 | MtrunA17_Chr7g0242051 | 40.870 | 230 | 120 | 10 | 17 | 240 | 16 | 235 | 2.23e-38 | 145 |
| Msa1063080 | MtrunA17_Chr7g0242051 | 37.805 | 164 | 88 | 3 | 253 | 407 | 316 | 474 | 2.92e-28 | 116 |
| Msa1063080 | MtrunA17_Chr4g0006091 | 32.812 | 320 | 153 | 11 | 92 | 400 | 25 | 293 | 8.85e-35 | 132 |
| Msa1063080 | MtrunA17_Chr7g0242101 | 45.333 | 150 | 75 | 4 | 9 | 153 | 3 | 150 | 5.66e-29 | 119 |
| Msa1063080 | MtrunA17_Chr7g0242101 | 30.909 | 330 | 162 | 12 | 138 | 407 | 223 | 546 | 6.20e-27 | 113 |
| Msa1063080 | MtrunA17_Chr7g0241971 | 43.478 | 138 | 69 | 3 | 17 | 147 | 3 | 138 | 1.41e-28 | 115 |
| Msa1063080 | MtrunA17_Chr7g0241971 | 38.571 | 140 | 73 | 3 | 278 | 407 | 178 | 314 | 3.08e-24 | 103 |
| Msa1063080 | MtrunA17_Chr7g0242131 | 46.457 | 127 | 59 | 3 | 13 | 135 | 5 | 126 | 2.73e-27 | 105 |
| Msa1063080 | MtrunA17_Chr4g0006121 | 42.857 | 126 | 57 | 4 | 276 | 400 | 123 | 234 | 5.16e-21 | 93.2 |
| Msa1063080 | MtrunA17_Chr3g0118601 | 24.816 | 407 | 239 | 15 | 35 | 408 | 45 | 417 | 5.23e-20 | 92.0 |
| Msa1063080 | MtrunA17_Chr7g0265891 | 24.566 | 403 | 246 | 13 | 35 | 411 | 56 | 426 | 1.67e-19 | 90.5 |
| Msa1063080 | MtrunA17_Chr6g0452551 | 22.667 | 375 | 247 | 10 | 35 | 403 | 30 | 367 | 2.47e-19 | 89.7 |
| Msa1063080 | MtrunA17_Chr5g0439721 | 27.540 | 374 | 230 | 14 | 25 | 384 | 27 | 373 | 3.60e-19 | 89.4 |
| Msa1063080 | MtrunA17_Chr5g0401791 | 24.641 | 418 | 257 | 14 | 31 | 415 | 102 | 494 | 4.13e-19 | 89.7 |
| Msa1063080 | MtrunA17_Chr6g0452561 | 23.097 | 381 | 249 | 9 | 35 | 403 | 30 | 378 | 8.33e-19 | 88.2 |
| Msa1063080 | MtrunA17_Chr6g0452601 | 23.483 | 379 | 243 | 8 | 35 | 400 | 30 | 374 | 1.54e-18 | 87.4 |
| Msa1063080 | MtrunA17_Chr6g0452611 | 23.118 | 372 | 244 | 10 | 35 | 400 | 29 | 364 | 1.88e-18 | 87.0 |
| Msa1063080 | MtrunA17_Chr5g0439661 | 31.707 | 164 | 99 | 4 | 28 | 184 | 26 | 183 | 3.14e-18 | 82.8 |
| Msa1063080 | MtrunA17_Chr6g0452501 | 23.560 | 382 | 231 | 13 | 35 | 400 | 30 | 366 | 7.81e-18 | 85.1 |
| Msa1063080 | MtrunA17_Chr2g0300311 | 22.785 | 395 | 265 | 8 | 31 | 413 | 51 | 417 | 8.76e-18 | 85.5 |
| Msa1063080 | MtrunA17_Chr6g0452591 | 24.679 | 389 | 224 | 15 | 35 | 403 | 60 | 399 | 2.12e-17 | 84.0 |
| Msa1063080 | MtrunA17_Chr5g0439641 | 25.393 | 382 | 231 | 15 | 31 | 384 | 33 | 388 | 1.10e-16 | 82.0 |
| Msa1063080 | MtrunA17_Chr6g0452531 | 22.043 | 372 | 249 | 9 | 35 | 400 | 30 | 366 | 2.74e-16 | 80.5 |
| Msa1063080 | MtrunA17_Chr4g0006051 | 34.969 | 163 | 81 | 5 | 18 | 172 | 16 | 161 | 6.04e-16 | 75.1 |
| Msa1063080 | MtrunA17_Chr3g0138001 | 23.592 | 373 | 251 | 10 | 35 | 400 | 31 | 376 | 1.83e-14 | 75.5 |
| Msa1063080 | MtrunA17_Chr6g0457371 | 23.650 | 389 | 223 | 14 | 35 | 403 | 30 | 364 | 2.37e-14 | 74.3 |
| Msa1063080 | MtrunA17_Chr2g0297831 | 22.857 | 385 | 254 | 10 | 35 | 406 | 72 | 426 | 4.21e-14 | 74.3 |
| Msa1063080 | MtrunA17_Chr7g0242121 | 37.500 | 104 | 47 | 3 | 257 | 351 | 33 | 127 | 6.78e-13 | 65.9 |
| Msa1063080 | MtrunA17_Chr6g0452161 | 23.120 | 359 | 229 | 11 | 35 | 381 | 30 | 353 | 3.21e-12 | 68.2 |
| Msa1063080 | MtrunA17_Chr4g0002911 | 24.719 | 267 | 191 | 5 | 31 | 292 | 43 | 304 | 1.83e-11 | 65.9 |
| Msa1063080 | MtrunA17_Chr8g0335011 | 27.624 | 181 | 116 | 5 | 19 | 184 | 25 | 205 | 9.19e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1063080 | AT2G36430.1 | 26.202 | 416 | 255 | 13 | 8 | 407 | 26 | 405 | 7.92e-28 | 115 |
| Msa1063080 | AT3G50150.1 | 25.505 | 396 | 252 | 11 | 35 | 410 | 95 | 467 | 2.30e-26 | 111 |
| Msa1063080 | AT5G11290.2 | 27.221 | 349 | 220 | 9 | 35 | 379 | 38 | 356 | 7.01e-25 | 106 |
| Msa1063080 | AT3G50160.1 | 26.190 | 378 | 230 | 12 | 35 | 400 | 109 | 449 | 1.17e-24 | 106 |
| Msa1063080 | AT4G31980.1 | 26.667 | 360 | 215 | 11 | 35 | 384 | 298 | 618 | 4.01e-23 | 102 |
| Msa1063080 | AT5G22540.1 | 23.773 | 387 | 252 | 11 | 35 | 407 | 36 | 393 | 9.93e-23 | 100 |
| Msa1063080 | AT3G50170.1 | 24.311 | 399 | 260 | 9 | 35 | 410 | 118 | 497 | 3.16e-22 | 99.4 |
| Msa1063080 | AT3G50140.1 | 23.325 | 403 | 259 | 12 | 35 | 410 | 118 | 497 | 2.20e-21 | 97.1 |
| Msa1063080 | AT3G47210.1 | 26.154 | 390 | 242 | 14 | 35 | 410 | 98 | 455 | 5.81e-21 | 95.5 |
| Msa1063080 | AT3G47250.3 | 25.193 | 389 | 252 | 8 | 35 | 405 | 66 | 433 | 9.51e-21 | 94.7 |
| Msa1063080 | AT3G47250.2 | 25.193 | 389 | 252 | 8 | 35 | 405 | 66 | 433 | 9.51e-21 | 94.7 |
| Msa1063080 | AT3G47250.1 | 25.193 | 389 | 252 | 8 | 35 | 405 | 66 | 433 | 9.51e-21 | 94.7 |
| Msa1063080 | AT3G50180.1 | 25.616 | 406 | 241 | 14 | 35 | 417 | 183 | 550 | 1.06e-20 | 95.1 |
| Msa1063080 | AT3G50130.1 | 23.940 | 401 | 258 | 12 | 35 | 410 | 144 | 522 | 2.27e-20 | 94.0 |
| Msa1063080 | AT3G50190.1 | 23.614 | 415 | 276 | 11 | 13 | 423 | 82 | 459 | 5.89e-20 | 92.4 |
| Msa1063080 | AT3G50150.2 | 25.177 | 282 | 181 | 8 | 35 | 296 | 95 | 366 | 1.11e-19 | 91.3 |
| Msa1063080 | AT3G50120.1 | 24.745 | 392 | 249 | 10 | 35 | 400 | 108 | 479 | 1.23e-19 | 91.7 |
| Msa1063080 | AT3G47200.1 | 24.873 | 394 | 245 | 15 | 35 | 405 | 51 | 416 | 5.62e-19 | 89.4 |
| Msa1063080 | AT3G47200.2 | 24.873 | 394 | 245 | 15 | 35 | 405 | 51 | 416 | 5.62e-19 | 89.4 |
| Msa1063080 | AT3G50170.2 | 31.333 | 150 | 96 | 3 | 35 | 183 | 118 | 261 | 2.86e-17 | 84.0 |
| Msa1063080 | AT3G50140.2 | 24.913 | 289 | 180 | 9 | 35 | 296 | 118 | 396 | 8.05e-17 | 82.4 |
| Msa1063080 | AT3G50190.2 | 23.958 | 288 | 193 | 7 | 13 | 296 | 82 | 347 | 7.01e-16 | 79.0 |
| Msa1063080 | AT3G50190.4 | 23.958 | 288 | 193 | 7 | 13 | 296 | 82 | 347 | 1.19e-15 | 78.6 |
| Msa1063080 | AT3G50190.3 | 23.958 | 288 | 193 | 7 | 13 | 296 | 82 | 347 | 1.19e-15 | 78.6 |
| Msa1063080 | AT3G44710.1 | 30.460 | 174 | 106 | 3 | 46 | 219 | 64 | 222 | 1.33e-15 | 79.3 |
| Msa1063080 | AT5G11290.1 | 24.921 | 317 | 204 | 9 | 67 | 379 | 1 | 287 | 1.29e-13 | 72.4 |
| Msa1063080 | AT5G22550.2 | 27.922 | 154 | 97 | 3 | 35 | 182 | 49 | 194 | 3.15e-11 | 65.5 |
| Msa1063080 | AT5G22560.1 | 24.324 | 222 | 132 | 8 | 35 | 238 | 52 | 255 | 9.76e-11 | 63.9 |
Find 79 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGATTGAGTTGATCAATT+TGG | 0.175142 | 7_2:-54571030 | None:intergenic |
| GAGATTGAGTTGATCAATTT+GGG | 0.233510 | 7_2:-54571029 | None:intergenic |
| TATTGTTCGTGCAAGCTATA+TGG | 0.294745 | 7_2:+54570673 | Msa1063080:CDS |
| CGAGTTATACGTAACGATTT+AGG | 0.304073 | 7_2:+54571533 | Msa1063080:CDS |
| GTCTCTGTAATAACCAATTC+TGG | 0.310249 | 7_2:-54571338 | None:intergenic |
| GGTTTCTAATATAGCATAAT+AGG | 0.328705 | 7_2:-54571672 | None:intergenic |
| ATACGAGCGGAAACAATTTC+AGG | 0.330327 | 7_2:-54571073 | None:intergenic |
| GACACTACTTGTTCCAGAAT+TGG | 0.334562 | 7_2:+54571325 | Msa1063080:CDS |
| TCAAATCGTGGAGAATAATA+AGG | 0.360628 | 7_2:+54571114 | Msa1063080:CDS |
| CAGAGACAATGGAATCAAAA+TGG | 0.374706 | 7_2:+54571354 | Msa1063080:CDS |
| TGTCTATAATGATTTGCTTA+TGG | 0.375743 | 7_2:+54570856 | Msa1063080:CDS |
| ATTCCGATCAATGGTATTGC+CGG | 0.393502 | 7_2:-54570827 | None:intergenic |
| GTACCGATGGAGACAACTTT+TGG | 0.394590 | 7_2:-54570515 | None:intergenic |
| CTCCATCGGTACTCGATACA+TGG | 0.396057 | 7_2:+54570526 | Msa1063080:CDS |
| AATGGCGGAATTTCATTGCT+TGG | 0.400692 | 7_2:+54571372 | Msa1063080:CDS |
| TTTGATTTAAAATTCATCAA+TGG | 0.403772 | 7_2:+54571302 | Msa1063080:CDS |
| CTAAAATCCTGCTGAAATAG+TGG | 0.404718 | 7_2:-54571710 | None:intergenic |
| CTTGGGAGCATCACAAGAAA+TGG | 0.406524 | 7_2:+54571390 | Msa1063080:CDS |
| TTGATTTAAAATTCATCAAT+GGG | 0.408863 | 7_2:+54571303 | Msa1063080:CDS |
| TCAAAACTTGACATTTCAAC+TGG | 0.410709 | 7_2:-54570617 | None:intergenic |
| GTATGATCTTGCTACAGTTA+TGG | 0.412094 | 7_2:+54570715 | Msa1063080:CDS |
| CGAAGTTCGTCTGGAACAAC+GGG | 0.418614 | 7_2:-54570467 | None:intergenic |
| CAACTCAATCTCAACTTCAA+TGG | 0.419347 | 7_2:+54571040 | Msa1063080:CDS |
| ATGGCGGAATTTCATTGCTT+GGG | 0.420231 | 7_2:+54571373 | Msa1063080:CDS |
| CGCCATTTGATCTCTTCCAT+TGG | 0.424515 | 7_2:-54570566 | None:intergenic |
| TACTTTGCCACTATTTCAGC+AGG | 0.438865 | 7_2:+54571703 | Msa1063080:CDS |
| GAGCTTCTCATTTCTTACTC+AGG | 0.439015 | 7_2:+54570761 | Msa1063080:CDS |
| GGAACAACGGGAATGCTATA+TGG | 0.443564 | 7_2:-54570455 | None:intergenic |
| AGAGATCAAATGGCGTTGTA+TGG | 0.444087 | 7_2:+54570574 | Msa1063080:CDS |
| TGTAGAAAGTGTTTATGATC+GGG | 0.446440 | 7_2:+54570931 | Msa1063080:CDS |
| AGTCGGACATTATTTCTGAT+TGG | 0.449239 | 7_2:+54570954 | Msa1063080:CDS |
| TCGAAGTTCGTCTGGAACAA+CGG | 0.466627 | 7_2:-54570468 | None:intergenic |
| AGCTTCTCATTTCTTACTCA+GGG | 0.466660 | 7_2:+54570762 | Msa1063080:CDS |
| GGATGATGAGTATGTGTTCA+AGG | 0.475476 | 7_2:-54571651 | None:intergenic |
| GAAGCAAAATACCATGTCAT+TGG | 0.477313 | 7_2:+54570403 | Msa1063080:CDS |
| AAAACATTTAGAATGTGAAA+TGG | 0.489252 | 7_2:-54570893 | None:intergenic |
| TGCCAATGGAAGAGATCAAA+TGG | 0.492988 | 7_2:+54570564 | Msa1063080:CDS |
| ACATGTTCCATTCCGATCAA+TGG | 0.493251 | 7_2:-54570836 | None:intergenic |
| AAATAGTGGCAAAGTAATGC+AGG | 0.495153 | 7_2:-54571696 | None:intergenic |
| AGGCATGAGTAATCGAGATC+TGG | 0.499675 | 7_2:+54571553 | Msa1063080:CDS |
| ATCAATGGTATTGCCGGAGA+AGG | 0.501273 | 7_2:-54570821 | None:intergenic |
| AAAACAATAAGCACAAAAGA+TGG | 0.501903 | 7_2:+54570381 | Msa1063080:CDS |
| TTGTAGAAAGTGTTTATGAT+CGG | 0.507043 | 7_2:+54570930 | Msa1063080:CDS |
| GGCAATACCATTGATCGGAA+TGG | 0.513379 | 7_2:+54570829 | Msa1063080:CDS |
| TGATTCAAAACTACCATCAC+GGG | 0.536163 | 7_2:+54570790 | Msa1063080:CDS |
| ACGGGACAAGTACCCTTCTC+CGG | 0.541541 | 7_2:+54570808 | Msa1063080:CDS |
| ATTGAAATTGATGTCGGAGG+AGG | 0.558357 | 7_2:+54571154 | Msa1063080:CDS |
| GGTCATAGCTATAGAAAGAG+AGG | 0.561468 | 7_2:-54571000 | None:intergenic |
| ATTGGTTATTACAGAGACAA+TGG | 0.561655 | 7_2:+54571343 | Msa1063080:CDS |
| CTATAATGATTTGCTTATGG+TGG | 0.567060 | 7_2:+54570859 | Msa1063080:CDS |
| GAAGGGTACTTGTCCCGTGA+TGG | 0.581613 | 7_2:-54570803 | None:intergenic |
| CAAAATACCATGTCATTGGT+AGG | 0.581628 | 7_2:+54570407 | Msa1063080:CDS |
| TCAATGGTATTGCCGGAGAA+GGG | 0.582118 | 7_2:-54570820 | None:intergenic |
| TTGATTCAAAACTACCATCA+CGG | 0.582434 | 7_2:+54570789 | Msa1063080:CDS |
| TCCCATGTATCGAGTACCGA+TGG | 0.583531 | 7_2:-54570528 | None:intergenic |
| AAGAAAAGAGCTAATGCCAA+TGG | 0.586368 | 7_2:+54570550 | Msa1063080:CDS |
| TTCGAGAATAGCTTCCATGC+AGG | 0.589158 | 7_2:-54570642 | None:intergenic |
| GATTAATTGAAAGCCATGGA+AGG | 0.599201 | 7_2:+54570356 | None:intergenic |
| GCATCGATTGAAATTGATGT+CGG | 0.606536 | 7_2:+54571148 | Msa1063080:CDS |
| TCTCCGGCAATACCATTGAT+CGG | 0.608645 | 7_2:+54570824 | Msa1063080:CDS |
| GTTGATCAATTTGGGGACGA+AGG | 0.608781 | 7_2:-54571021 | None:intergenic |
| ACTCATTGTCAATGATGTCA+CGG | 0.612953 | 7_2:-54571610 | None:intergenic |
| ATCACTGAAAAGCAAAGCAG+AGG | 0.615803 | 7_2:-54571468 | None:intergenic |
| TGTTTCCGCTCGTATTGATG+CGG | 0.625755 | 7_2:+54571081 | Msa1063080:CDS |
| AATAGTGGCAAAGTAATGCA+GGG | 0.630597 | 7_2:-54571695 | None:intergenic |
| TCCATCGGTACTCGATACAT+GGG | 0.630624 | 7_2:+54570527 | Msa1063080:CDS |
| AGATTGAGTTGATCAATTTG+GGG | 0.630889 | 7_2:-54571028 | None:intergenic |
| AAGTGTTTATGATCGGGAGT+CGG | 0.634120 | 7_2:+54570937 | Msa1063080:CDS |
| ATACCAAAAGTTGTCTCCAT+CGG | 0.635175 | 7_2:+54570512 | Msa1063080:CDS |
| GCTTCTCATTTCTTACTCAG+GGG | 0.641980 | 7_2:+54570763 | Msa1063080:CDS |
| GTCATAGCTATAGAAAGAGA+GGG | 0.642936 | 7_2:-54570999 | None:intergenic |
| GAAACAATTTCAGGTAAGTG+AGG | 0.652623 | 7_2:-54571064 | None:intergenic |
| TCGATTGAAATTGATGTCGG+AGG | 0.667501 | 7_2:+54571151 | Msa1063080:CDS |
| TACAGCACCTACCAATGACA+TGG | 0.678009 | 7_2:-54570414 | None:intergenic |
| ATAGTGGCAAAGTAATGCAG+GGG | 0.698073 | 7_2:-54571694 | None:intergenic |
| AGACAATGGAATCAAAATGG+CGG | 0.698722 | 7_2:+54571357 | Msa1063080:CDS |
| GGAGAATGATGTTCAAATCG+TGG | 0.698946 | 7_2:+54571102 | Msa1063080:CDS |
| ATTCTCCGCATCAATACGAG+CGG | 0.700760 | 7_2:-54571086 | None:intergenic |
| TAGTGGCAAAGTAATGCAGG+GGG | 0.729675 | 7_2:-54571693 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGATTTAAAATTCATCAA+TGG | + | chr7_2:54571302-54571321 | Msa1063080:CDS | 15.0% |
| !!! | TTGATTTAAAATTCATCAAT+GGG | + | chr7_2:54571303-54571322 | Msa1063080:CDS | 15.0% |
| !!! | TTTGATTTAAAATTCATCAA+TGG | + | chr7_2:54571302-54571321 | Msa1063080:CDS | 15.0% |
| !!! | TTGATTTAAAATTCATCAAT+GGG | + | chr7_2:54571303-54571322 | Msa1063080:CDS | 15.0% |
| !!! | AAAACATTTAGAATGTGAAA+TGG | - | chr7_2:54570896-54570915 | None:intergenic | 20.0% |
| !!! | AAAACATTTAGAATGTGAAA+TGG | - | chr7_2:54570896-54570915 | None:intergenic | 20.0% |
| ! | AAAACAATAAGCACAAAAGA+TGG | + | chr7_2:54570381-54570400 | Msa1063080:CDS | 25.0% |
| !!! | TGTCTATAATGATTTGCTTA+TGG | + | chr7_2:54570856-54570875 | Msa1063080:CDS | 25.0% |
| !!! | TTGTAGAAAGTGTTTATGAT+CGG | + | chr7_2:54570930-54570949 | Msa1063080:CDS | 25.0% |
| !! | CTTAAAAATACTCTGAGAAA+TGG | - | chr7_2:54571243-54571262 | None:intergenic | 25.0% |
| !!! | CAGAGTATTTTTAAGACATT+AGG | + | chr7_2:54571248-54571267 | Msa1063080:intron | 25.0% |
| ! | GGTTTCTAATATAGCATAAT+AGG | - | chr7_2:54571675-54571694 | None:intergenic | 25.0% |
| ! | AAAACAATAAGCACAAAAGA+TGG | + | chr7_2:54570381-54570400 | Msa1063080:CDS | 25.0% |
| !!! | TGTCTATAATGATTTGCTTA+TGG | + | chr7_2:54570856-54570875 | Msa1063080:CDS | 25.0% |
| !!! | TTGTAGAAAGTGTTTATGAT+CGG | + | chr7_2:54570930-54570949 | Msa1063080:CDS | 25.0% |
| !! | CTTAAAAATACTCTGAGAAA+TGG | - | chr7_2:54571243-54571262 | None:intergenic | 25.0% |
| !!! | CAGAGTATTTTTAAGACATT+AGG | + | chr7_2:54571248-54571267 | Msa1063080:intron | 25.0% |
| ! | GGTTTCTAATATAGCATAAT+AGG | - | chr7_2:54571675-54571694 | None:intergenic | 25.0% |
| TCAAAACTTGACATTTCAAC+TGG | - | chr7_2:54570620-54570639 | None:intergenic | 30.0% | |
| TTGATTCAAAACTACCATCA+CGG | + | chr7_2:54570789-54570808 | Msa1063080:CDS | 30.0% | |
| !! | CTATAATGATTTGCTTATGG+TGG | + | chr7_2:54570859-54570878 | Msa1063080:CDS | 30.0% |
| !! | TGTAGAAAGTGTTTATGATC+GGG | + | chr7_2:54570931-54570950 | Msa1063080:CDS | 30.0% |
| !! | AGATTGAGTTGATCAATTTG+GGG | - | chr7_2:54571031-54571050 | None:intergenic | 30.0% |
| !! | GAGATTGAGTTGATCAATTT+GGG | - | chr7_2:54571032-54571051 | None:intergenic | 30.0% |
| !! | TGAGATTGAGTTGATCAATT+TGG | - | chr7_2:54571033-54571052 | None:intergenic | 30.0% |
| TCAAATCGTGGAGAATAATA+AGG | + | chr7_2:54571114-54571133 | Msa1063080:CDS | 30.0% | |
| ATTGGTTATTACAGAGACAA+TGG | + | chr7_2:54571343-54571362 | Msa1063080:CDS | 30.0% | |
| ! | GAAGAAGAGTTCTTCTTTTT+CGG | + | chr7_2:54571412-54571431 | Msa1063080:CDS | 30.0% |
| !! | CTTTTTCATTCAATCGCAAA+AGG | + | chr7_2:54571581-54571600 | Msa1063080:CDS | 30.0% |
| ! | ATTTCAGCAGGATTTTAGAT+TGG | + | chr7_2:54571715-54571734 | Msa1063080:CDS | 30.0% |
| TCAAAACTTGACATTTCAAC+TGG | - | chr7_2:54570620-54570639 | None:intergenic | 30.0% | |
| TTGATTCAAAACTACCATCA+CGG | + | chr7_2:54570789-54570808 | Msa1063080:CDS | 30.0% | |
| !! | CTATAATGATTTGCTTATGG+TGG | + | chr7_2:54570859-54570878 | Msa1063080:CDS | 30.0% |
| !! | TGTAGAAAGTGTTTATGATC+GGG | + | chr7_2:54570931-54570950 | Msa1063080:CDS | 30.0% |
| !! | AGATTGAGTTGATCAATTTG+GGG | - | chr7_2:54571031-54571050 | None:intergenic | 30.0% |
| !! | GAGATTGAGTTGATCAATTT+GGG | - | chr7_2:54571032-54571051 | None:intergenic | 30.0% |
| !! | TGAGATTGAGTTGATCAATT+TGG | - | chr7_2:54571033-54571052 | None:intergenic | 30.0% |
| TCAAATCGTGGAGAATAATA+AGG | + | chr7_2:54571114-54571133 | Msa1063080:CDS | 30.0% | |
| ATTGGTTATTACAGAGACAA+TGG | + | chr7_2:54571343-54571362 | Msa1063080:CDS | 30.0% | |
| ! | GAAGAAGAGTTCTTCTTTTT+CGG | + | chr7_2:54571412-54571431 | Msa1063080:CDS | 30.0% |
| !! | CTTTTTCATTCAATCGCAAA+AGG | + | chr7_2:54571581-54571600 | Msa1063080:CDS | 30.0% |
| ! | ATTTCAGCAGGATTTTAGAT+TGG | + | chr7_2:54571715-54571734 | Msa1063080:CDS | 30.0% |
| GAAGCAAAATACCATGTCAT+TGG | + | chr7_2:54570403-54570422 | Msa1063080:CDS | 35.0% | |
| CAAAATACCATGTCATTGGT+AGG | + | chr7_2:54570407-54570426 | Msa1063080:CDS | 35.0% | |
| ! | TTCAATTTTCGAAGTTCGTC+TGG | - | chr7_2:54570479-54570498 | None:intergenic | 35.0% |
| ATACCAAAAGTTGTCTCCAT+CGG | + | chr7_2:54570512-54570531 | Msa1063080:CDS | 35.0% | |
| AAGAAAAGAGCTAATGCCAA+TGG | + | chr7_2:54570550-54570569 | Msa1063080:CDS | 35.0% | |
| TATTGTTCGTGCAAGCTATA+TGG | + | chr7_2:54570673-54570692 | Msa1063080:CDS | 35.0% | |
| GTATGATCTTGCTACAGTTA+TGG | + | chr7_2:54570715-54570734 | Msa1063080:CDS | 35.0% | |
| ! | GCTACAGTTATGGTTTTTGA+TGG | + | chr7_2:54570725-54570744 | Msa1063080:CDS | 35.0% |
| AGCTTCTCATTTCTTACTCA+GGG | + | chr7_2:54570762-54570781 | Msa1063080:CDS | 35.0% | |
| TGATTCAAAACTACCATCAC+GGG | + | chr7_2:54570790-54570809 | Msa1063080:CDS | 35.0% | |
| !! | AGTCGGACATTATTTCTGAT+TGG | + | chr7_2:54570954-54570973 | Msa1063080:CDS | 35.0% |
| GTCATAGCTATAGAAAGAGA+GGG | - | chr7_2:54571002-54571021 | None:intergenic | 35.0% | |
| CAACTCAATCTCAACTTCAA+TGG | + | chr7_2:54571040-54571059 | Msa1063080:CDS | 35.0% | |
| ! | GAAACAATTTCAGGTAAGTG+AGG | - | chr7_2:54571067-54571086 | None:intergenic | 35.0% |
| !! | GCATCGATTGAAATTGATGT+CGG | + | chr7_2:54571148-54571167 | Msa1063080:CDS | 35.0% |
| GTCTCTGTAATAACCAATTC+TGG | - | chr7_2:54571341-54571360 | None:intergenic | 35.0% | |
| CAGAGACAATGGAATCAAAA+TGG | + | chr7_2:54571354-54571373 | Msa1063080:CDS | 35.0% | |
| AGACAATGGAATCAAAATGG+CGG | + | chr7_2:54571357-54571376 | Msa1063080:CDS | 35.0% | |
| CGAGTTATACGTAACGATTT+AGG | + | chr7_2:54571533-54571552 | Msa1063080:CDS | 35.0% | |
| ACTCATTGTCAATGATGTCA+CGG | - | chr7_2:54571613-54571632 | None:intergenic | 35.0% | |
| AATAGTGGCAAAGTAATGCA+GGG | - | chr7_2:54571698-54571717 | None:intergenic | 35.0% | |
| AAATAGTGGCAAAGTAATGC+AGG | - | chr7_2:54571699-54571718 | None:intergenic | 35.0% | |
| CTAAAATCCTGCTGAAATAG+TGG | - | chr7_2:54571713-54571732 | None:intergenic | 35.0% | |
| GAAGCAAAATACCATGTCAT+TGG | + | chr7_2:54570403-54570422 | Msa1063080:CDS | 35.0% | |
| CAAAATACCATGTCATTGGT+AGG | + | chr7_2:54570407-54570426 | Msa1063080:CDS | 35.0% | |
| ! | TTCAATTTTCGAAGTTCGTC+TGG | - | chr7_2:54570479-54570498 | None:intergenic | 35.0% |
| ATACCAAAAGTTGTCTCCAT+CGG | + | chr7_2:54570512-54570531 | Msa1063080:CDS | 35.0% | |
| AAGAAAAGAGCTAATGCCAA+TGG | + | chr7_2:54570550-54570569 | Msa1063080:CDS | 35.0% | |
| TATTGTTCGTGCAAGCTATA+TGG | + | chr7_2:54570673-54570692 | Msa1063080:CDS | 35.0% | |
| GTATGATCTTGCTACAGTTA+TGG | + | chr7_2:54570715-54570734 | Msa1063080:CDS | 35.0% | |
| ! | GCTACAGTTATGGTTTTTGA+TGG | + | chr7_2:54570725-54570744 | Msa1063080:CDS | 35.0% |
| AGCTTCTCATTTCTTACTCA+GGG | + | chr7_2:54570762-54570781 | Msa1063080:CDS | 35.0% | |
| TGATTCAAAACTACCATCAC+GGG | + | chr7_2:54570790-54570809 | Msa1063080:CDS | 35.0% | |
| !! | AGTCGGACATTATTTCTGAT+TGG | + | chr7_2:54570954-54570973 | Msa1063080:CDS | 35.0% |
| GTCATAGCTATAGAAAGAGA+GGG | - | chr7_2:54571002-54571021 | None:intergenic | 35.0% | |
| CAACTCAATCTCAACTTCAA+TGG | + | chr7_2:54571040-54571059 | Msa1063080:CDS | 35.0% | |
| ! | GAAACAATTTCAGGTAAGTG+AGG | - | chr7_2:54571067-54571086 | None:intergenic | 35.0% |
| !! | GCATCGATTGAAATTGATGT+CGG | + | chr7_2:54571148-54571167 | Msa1063080:CDS | 35.0% |
| GTCTCTGTAATAACCAATTC+TGG | - | chr7_2:54571341-54571360 | None:intergenic | 35.0% | |
| CAGAGACAATGGAATCAAAA+TGG | + | chr7_2:54571354-54571373 | Msa1063080:CDS | 35.0% | |
| AGACAATGGAATCAAAATGG+CGG | + | chr7_2:54571357-54571376 | Msa1063080:CDS | 35.0% | |
| CGAGTTATACGTAACGATTT+AGG | + | chr7_2:54571533-54571552 | Msa1063080:CDS | 35.0% | |
| ACTCATTGTCAATGATGTCA+CGG | - | chr7_2:54571613-54571632 | None:intergenic | 35.0% | |
| AATAGTGGCAAAGTAATGCA+GGG | - | chr7_2:54571698-54571717 | None:intergenic | 35.0% | |
| AAATAGTGGCAAAGTAATGC+AGG | - | chr7_2:54571699-54571718 | None:intergenic | 35.0% | |
| CTAAAATCCTGCTGAAATAG+TGG | - | chr7_2:54571713-54571732 | None:intergenic | 35.0% | |
| TGCCAATGGAAGAGATCAAA+TGG | + | chr7_2:54570564-54570583 | Msa1063080:CDS | 40.0% | |
| AGAGATCAAATGGCGTTGTA+TGG | + | chr7_2:54570574-54570593 | Msa1063080:CDS | 40.0% | |
| GAGCTTCTCATTTCTTACTC+AGG | + | chr7_2:54570761-54570780 | Msa1063080:CDS | 40.0% | |
| GCTTCTCATTTCTTACTCAG+GGG | + | chr7_2:54570763-54570782 | Msa1063080:CDS | 40.0% | |
| ATTCCGATCAATGGTATTGC+CGG | - | chr7_2:54570830-54570849 | None:intergenic | 40.0% | |
| ACATGTTCCATTCCGATCAA+TGG | - | chr7_2:54570839-54570858 | None:intergenic | 40.0% | |
| AAGTGTTTATGATCGGGAGT+CGG | + | chr7_2:54570937-54570956 | Msa1063080:CDS | 40.0% | |
| GGTCATAGCTATAGAAAGAG+AGG | - | chr7_2:54571003-54571022 | None:intergenic | 40.0% | |
| ATACGAGCGGAAACAATTTC+AGG | - | chr7_2:54571076-54571095 | None:intergenic | 40.0% | |
| GGAGAATGATGTTCAAATCG+TGG | + | chr7_2:54571102-54571121 | Msa1063080:CDS | 40.0% | |
| TCGATTGAAATTGATGTCGG+AGG | + | chr7_2:54571151-54571170 | Msa1063080:CDS | 40.0% | |
| ATTGAAATTGATGTCGGAGG+AGG | + | chr7_2:54571154-54571173 | Msa1063080:CDS | 40.0% | |
| ATTTGAATCGATGTGCGACT+AGG | + | chr7_2:54571194-54571213 | Msa1063080:intron | 40.0% | |
| GACACTACTTGTTCCAGAAT+TGG | + | chr7_2:54571325-54571344 | Msa1063080:CDS | 40.0% | |
| ! | AATGGCGGAATTTCATTGCT+TGG | + | chr7_2:54571372-54571391 | Msa1063080:CDS | 40.0% |
| ! | ATGGCGGAATTTCATTGCTT+GGG | + | chr7_2:54571373-54571392 | Msa1063080:CDS | 40.0% |
| ATCACTGAAAAGCAAAGCAG+AGG | - | chr7_2:54571471-54571490 | None:intergenic | 40.0% | |
| GGATGATGAGTATGTGTTCA+AGG | - | chr7_2:54571654-54571673 | None:intergenic | 40.0% | |
| ATAGTGGCAAAGTAATGCAG+GGG | - | chr7_2:54571697-54571716 | None:intergenic | 40.0% | |
| TACTTTGCCACTATTTCAGC+AGG | + | chr7_2:54571703-54571722 | Msa1063080:CDS | 40.0% | |
| TGCCAATGGAAGAGATCAAA+TGG | + | chr7_2:54570564-54570583 | Msa1063080:CDS | 40.0% | |
| AGAGATCAAATGGCGTTGTA+TGG | + | chr7_2:54570574-54570593 | Msa1063080:CDS | 40.0% | |
| GAGCTTCTCATTTCTTACTC+AGG | + | chr7_2:54570761-54570780 | Msa1063080:CDS | 40.0% | |
| GCTTCTCATTTCTTACTCAG+GGG | + | chr7_2:54570763-54570782 | Msa1063080:CDS | 40.0% | |
| ATTCCGATCAATGGTATTGC+CGG | - | chr7_2:54570830-54570849 | None:intergenic | 40.0% | |
| ACATGTTCCATTCCGATCAA+TGG | - | chr7_2:54570839-54570858 | None:intergenic | 40.0% | |
| AAGTGTTTATGATCGGGAGT+CGG | + | chr7_2:54570937-54570956 | Msa1063080:CDS | 40.0% | |
| GGTCATAGCTATAGAAAGAG+AGG | - | chr7_2:54571003-54571022 | None:intergenic | 40.0% | |
| ATACGAGCGGAAACAATTTC+AGG | - | chr7_2:54571076-54571095 | None:intergenic | 40.0% | |
| GGAGAATGATGTTCAAATCG+TGG | + | chr7_2:54571102-54571121 | Msa1063080:CDS | 40.0% | |
| TCGATTGAAATTGATGTCGG+AGG | + | chr7_2:54571151-54571170 | Msa1063080:CDS | 40.0% | |
| ATTGAAATTGATGTCGGAGG+AGG | + | chr7_2:54571154-54571173 | Msa1063080:CDS | 40.0% | |
| ATTTGAATCGATGTGCGACT+AGG | + | chr7_2:54571194-54571213 | Msa1063080:intron | 40.0% | |
| GACACTACTTGTTCCAGAAT+TGG | + | chr7_2:54571325-54571344 | Msa1063080:CDS | 40.0% | |
| ! | AATGGCGGAATTTCATTGCT+TGG | + | chr7_2:54571372-54571391 | Msa1063080:CDS | 40.0% |
| ! | ATGGCGGAATTTCATTGCTT+GGG | + | chr7_2:54571373-54571392 | Msa1063080:CDS | 40.0% |
| ATCACTGAAAAGCAAAGCAG+AGG | - | chr7_2:54571471-54571490 | None:intergenic | 40.0% | |
| GGATGATGAGTATGTGTTCA+AGG | - | chr7_2:54571654-54571673 | None:intergenic | 40.0% | |
| ATAGTGGCAAAGTAATGCAG+GGG | - | chr7_2:54571697-54571716 | None:intergenic | 40.0% | |
| TACTTTGCCACTATTTCAGC+AGG | + | chr7_2:54571703-54571722 | Msa1063080:CDS | 40.0% | |
| TACAGCACCTACCAATGACA+TGG | - | chr7_2:54570417-54570436 | None:intergenic | 45.0% | |
| GGAACAACGGGAATGCTATA+TGG | - | chr7_2:54570458-54570477 | None:intergenic | 45.0% | |
| ! | TCGAAGTTCGTCTGGAACAA+CGG | - | chr7_2:54570471-54570490 | None:intergenic | 45.0% |
| !! | GTACCGATGGAGACAACTTT+TGG | - | chr7_2:54570518-54570537 | None:intergenic | 45.0% |
| TCCATCGGTACTCGATACAT+GGG | + | chr7_2:54570527-54570546 | Msa1063080:CDS | 45.0% | |
| CGCCATTTGATCTCTTCCAT+TGG | - | chr7_2:54570569-54570588 | None:intergenic | 45.0% | |
| !! | GTCAAGTTTTGACACCTGCA+TGG | + | chr7_2:54570628-54570647 | Msa1063080:CDS | 45.0% |
| TTCGAGAATAGCTTCCATGC+AGG | - | chr7_2:54570645-54570664 | None:intergenic | 45.0% | |
| TCAATGGTATTGCCGGAGAA+GGG | - | chr7_2:54570823-54570842 | None:intergenic | 45.0% | |
| ATCAATGGTATTGCCGGAGA+AGG | - | chr7_2:54570824-54570843 | None:intergenic | 45.0% | |
| TCTCCGGCAATACCATTGAT+CGG | + | chr7_2:54570824-54570843 | Msa1063080:CDS | 45.0% | |
| GGCAATACCATTGATCGGAA+TGG | + | chr7_2:54570829-54570848 | Msa1063080:CDS | 45.0% | |
| GTTGATCAATTTGGGGACGA+AGG | - | chr7_2:54571024-54571043 | None:intergenic | 45.0% | |
| ! | TGTTTCCGCTCGTATTGATG+CGG | + | chr7_2:54571081-54571100 | Msa1063080:CDS | 45.0% |
| ATTCTCCGCATCAATACGAG+CGG | - | chr7_2:54571089-54571108 | None:intergenic | 45.0% | |
| !! | CTTGGGAGCATCACAAGAAA+TGG | + | chr7_2:54571390-54571409 | Msa1063080:CDS | 45.0% |
| AGGCATGAGTAATCGAGATC+TGG | + | chr7_2:54571553-54571572 | Msa1063080:CDS | 45.0% | |
| TAGTGGCAAAGTAATGCAGG+GGG | - | chr7_2:54571696-54571715 | None:intergenic | 45.0% | |
| TACAGCACCTACCAATGACA+TGG | - | chr7_2:54570417-54570436 | None:intergenic | 45.0% | |
| GGAACAACGGGAATGCTATA+TGG | - | chr7_2:54570458-54570477 | None:intergenic | 45.0% | |
| ! | TCGAAGTTCGTCTGGAACAA+CGG | - | chr7_2:54570471-54570490 | None:intergenic | 45.0% |
| !! | GTACCGATGGAGACAACTTT+TGG | - | chr7_2:54570518-54570537 | None:intergenic | 45.0% |
| TCCATCGGTACTCGATACAT+GGG | + | chr7_2:54570527-54570546 | Msa1063080:CDS | 45.0% | |
| CGCCATTTGATCTCTTCCAT+TGG | - | chr7_2:54570569-54570588 | None:intergenic | 45.0% | |
| !! | GTCAAGTTTTGACACCTGCA+TGG | + | chr7_2:54570628-54570647 | Msa1063080:CDS | 45.0% |
| TTCGAGAATAGCTTCCATGC+AGG | - | chr7_2:54570645-54570664 | None:intergenic | 45.0% | |
| TCAATGGTATTGCCGGAGAA+GGG | - | chr7_2:54570823-54570842 | None:intergenic | 45.0% | |
| ATCAATGGTATTGCCGGAGA+AGG | - | chr7_2:54570824-54570843 | None:intergenic | 45.0% | |
| TCTCCGGCAATACCATTGAT+CGG | + | chr7_2:54570824-54570843 | Msa1063080:CDS | 45.0% | |
| GGCAATACCATTGATCGGAA+TGG | + | chr7_2:54570829-54570848 | Msa1063080:CDS | 45.0% | |
| GTTGATCAATTTGGGGACGA+AGG | - | chr7_2:54571024-54571043 | None:intergenic | 45.0% | |
| ! | TGTTTCCGCTCGTATTGATG+CGG | + | chr7_2:54571081-54571100 | Msa1063080:CDS | 45.0% |
| ATTCTCCGCATCAATACGAG+CGG | - | chr7_2:54571089-54571108 | None:intergenic | 45.0% | |
| !! | CTTGGGAGCATCACAAGAAA+TGG | + | chr7_2:54571390-54571409 | Msa1063080:CDS | 45.0% |
| AGGCATGAGTAATCGAGATC+TGG | + | chr7_2:54571553-54571572 | Msa1063080:CDS | 45.0% | |
| TAGTGGCAAAGTAATGCAGG+GGG | - | chr7_2:54571696-54571715 | None:intergenic | 45.0% | |
| ! | CGAAGTTCGTCTGGAACAAC+GGG | - | chr7_2:54570470-54570489 | None:intergenic | 50.0% |
| CTCCATCGGTACTCGATACA+TGG | + | chr7_2:54570526-54570545 | Msa1063080:CDS | 50.0% | |
| !! | TCCCATGTATCGAGTACCGA+TGG | - | chr7_2:54570531-54570550 | None:intergenic | 50.0% |
| CGACTAGGCTTTACGCATCT+GGG | + | chr7_2:54571209-54571228 | Msa1063080:intron | 50.0% | |
| ! | AGGCTTTACGCATCTGGGAT+TGG | + | chr7_2:54571214-54571233 | Msa1063080:intron | 50.0% |
| ! | CGAAGTTCGTCTGGAACAAC+GGG | - | chr7_2:54570470-54570489 | None:intergenic | 50.0% |
| CTCCATCGGTACTCGATACA+TGG | + | chr7_2:54570526-54570545 | Msa1063080:CDS | 50.0% | |
| !! | TCCCATGTATCGAGTACCGA+TGG | - | chr7_2:54570531-54570550 | None:intergenic | 50.0% |
| CGACTAGGCTTTACGCATCT+GGG | + | chr7_2:54571209-54571228 | Msa1063080:intron | 50.0% | |
| ! | AGGCTTTACGCATCTGGGAT+TGG | + | chr7_2:54571214-54571233 | Msa1063080:intron | 50.0% |
| !! | GAAGGGTACTTGTCCCGTGA+TGG | - | chr7_2:54570806-54570825 | None:intergenic | 55.0% |
| ACGGGACAAGTACCCTTCTC+CGG | + | chr7_2:54570808-54570827 | Msa1063080:CDS | 55.0% | |
| GCGACTAGGCTTTACGCATC+TGG | + | chr7_2:54571208-54571227 | Msa1063080:intron | 55.0% | |
| !! | GAAGGGTACTTGTCCCGTGA+TGG | - | chr7_2:54570806-54570825 | None:intergenic | 55.0% |
| ACGGGACAAGTACCCTTCTC+CGG | + | chr7_2:54570808-54570827 | Msa1063080:CDS | 55.0% | |
| GCGACTAGGCTTTACGCATC+TGG | + | chr7_2:54571208-54571227 | Msa1063080:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 54570371 | 54571763 | 54570371 | ID=Msa1063080;Name=Msa1063080 |
| chr7_2 | mRNA | 54570371 | 54571763 | 54570371 | ID=Msa1063080-mRNA-1;Parent=Msa1063080;Name=Msa1063080-mRNA-1;_AED=0.17;_eAED=0.22;_QI=0|0|0|1|1|1|2|0|432 |
| chr7_2 | exon | 54570371 | 54571175 | 54570371 | ID=Msa1063080-mRNA-1:exon:10021;Parent=Msa1063080-mRNA-1 |
| chr7_2 | exon | 54571270 | 54571763 | 54571270 | ID=Msa1063080-mRNA-1:exon:10022;Parent=Msa1063080-mRNA-1 |
| chr7_2 | CDS | 54570371 | 54571175 | 54570371 | ID=Msa1063080-mRNA-1:cds;Parent=Msa1063080-mRNA-1 |
| chr7_2 | CDS | 54571270 | 54571763 | 54571270 | ID=Msa1063080-mRNA-1:cds;Parent=Msa1063080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
