Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810270 | XP_003615144.1 | 95.395 | 304 | 13 | 1 | 1 | 303 | 1 | 304 | 0.0 | 598 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810270 | sp|O82161|PHI1_TOBAC | 73.333 | 300 | 70 | 5 | 9 | 303 | 7 | 301 | 1.59e-155 | 440 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810270 | G7KBC1 | 95.395 | 304 | 13 | 1 | 1 | 303 | 1 | 304 | 0.0 | 598 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031520 | Msa0810270 | 0.806444 | 8.203510e-50 | -8.615850e-47 |
| Msa0078640 | Msa0810270 | 0.806299 | 8.801445e-50 | -8.615850e-47 |
| Msa0099210 | Msa0810270 | 0.804571 | 2.026471e-49 | -8.615850e-47 |
| Msa0101020 | Msa0810270 | 0.802305 | 5.975751e-49 | -8.615850e-47 |
| Msa0106620 | Msa0810270 | 0.815744 | 7.902003e-52 | -8.615850e-47 |
| Msa0106710 | Msa0810270 | 0.814864 | 1.239683e-51 | -8.615850e-47 |
| Msa0602980 | Msa0810270 | 0.805283 | 1.438376e-49 | -8.615850e-47 |
| Msa0613110 | Msa0810270 | 0.803839 | 2.878119e-49 | -8.615850e-47 |
| Msa0613340 | Msa0810270 | 0.827819 | 1.267559e-54 | -8.615850e-47 |
| Msa0613710 | Msa0810270 | 0.808609 | 2.847812e-50 | -8.615850e-47 |
| Msa0618470 | Msa0810270 | 0.800563 | 1.359249e-48 | -8.615850e-47 |
| Msa0622170 | Msa0810270 | -0.823994 | 1.026026e-53 | -8.615850e-47 |
| Msa0638360 | Msa0810270 | 0.837572 | 4.801371e-57 | -8.615850e-47 |
| Msa0644400 | Msa0810270 | 0.807113 | 5.924069e-50 | -8.615850e-47 |
| Msa0696850 | Msa0810270 | 0.841406 | 4.844932e-58 | -8.615850e-47 |
| Msa0696860 | Msa0810270 | 0.801748 | 7.776822e-49 | -8.615850e-47 |
| Msa0708310 | Msa0810270 | 0.808430 | 3.108703e-50 | -8.615850e-47 |
| Msa0711130 | Msa0810270 | 0.802176 | 6.351711e-49 | -8.615850e-47 |
| Msa0732640 | Msa0810270 | 0.800029 | 1.745598e-48 | -8.615850e-47 |
| Msa0750250 | Msa0810270 | 0.800850 | 1.187759e-48 | -8.615850e-47 |
| Msa0756380 | Msa0810270 | 0.809814 | 1.571228e-50 | -8.615850e-47 |
| Msa0768290 | Msa0810270 | 0.806982 | 6.312553e-50 | -8.615850e-47 |
| Msa0768370 | Msa0810270 | 0.803350 | 3.635563e-49 | -8.615850e-47 |
| Msa0784480 | Msa0810270 | 0.819080 | 1.401325e-52 | -8.615850e-47 |
| Msa0797250 | Msa0810270 | 0.828354 | 9.421101e-55 | -8.615850e-47 |
| Msa0810270 | Msa0828240 | 0.801105 | 1.053273e-48 | -8.615850e-47 |
| Msa0810270 | Msa0835230 | 0.801258 | 9.800860e-49 | -8.615850e-47 |
| Msa0810270 | Msa0844490 | 0.805592 | 1.238960e-49 | -8.615850e-47 |
| Msa0810270 | Msa0853520 | 0.824543 | 7.626074e-54 | -8.615850e-47 |
| Msa0810270 | Msa0866450 | 0.810825 | 9.506523e-51 | -8.615850e-47 |
| Msa0810270 | Msa0899430 | 0.801631 | 8.221471e-49 | -8.615850e-47 |
| Msa0810270 | Msa0902830 | 0.801822 | 7.510353e-49 | -8.615850e-47 |
| Msa0810270 | Msa0914270 | 0.857285 | 1.811347e-62 | -8.615850e-47 |
| Msa0810270 | Msa0927380 | 0.808876 | 2.496206e-50 | -8.615850e-47 |
| Msa0810270 | Msa0936390 | 0.813478 | 2.507968e-51 | -8.615850e-47 |
| Msa0810270 | Msa0948320 | 0.806081 | 9.783215e-50 | -8.615850e-47 |
| Msa0810270 | Msa0969520 | 0.805853 | 1.092048e-49 | -8.615850e-47 |
| Msa0810270 | Msa0974080 | 0.824741 | 6.846749e-54 | -8.615850e-47 |
| Msa0810270 | Msa0974950 | 0.800455 | 1.429883e-48 | -8.615850e-47 |
| Msa0810270 | Msa1001390 | 0.807360 | 5.251751e-50 | -8.615850e-47 |
| Msa0810270 | Msa1006010 | -0.820617 | 6.240117e-53 | -8.615850e-47 |
| Msa0810270 | Msa1008610 | 0.800161 | 1.640629e-48 | -8.615850e-47 |
| Msa0810270 | Msa1034500 | 0.813556 | 2.411107e-51 | -8.615850e-47 |
| Msa0810270 | Msa1039710 | -0.822878 | 1.871403e-53 | -8.615850e-47 |
| Msa0810270 | Msa1063080 | 0.805131 | 1.548128e-49 | -8.615850e-47 |
| Msa0810270 | Msa1063420 | 0.822279 | 2.579433e-53 | -8.615850e-47 |
| Msa0810270 | Msa1080960 | 0.801622 | 8.254030e-49 | -8.615850e-47 |
| Msa0810270 | Msa1098250 | 0.807728 | 4.386840e-50 | -8.615850e-47 |
| Msa0810270 | Msa1098270 | 0.809740 | 1.629671e-50 | -8.615850e-47 |
| Msa0810270 | Msa1121480 | 0.820852 | 5.510361e-53 | -8.615850e-47 |
| Msa0810270 | Msa1121490 | 0.818665 | 1.740801e-52 | -8.615850e-47 |
| Msa0810270 | Msa1137570 | 0.801573 | 8.447954e-49 | -8.615850e-47 |
| Msa0810270 | Msa1143020 | 0.813070 | 3.083156e-51 | -8.615850e-47 |
| Msa0810270 | Msa1177560 | 0.847674 | 9.956764e-60 | -8.615850e-47 |
| Msa0810270 | Msa1185110 | 0.826557 | 2.541915e-54 | -8.615850e-47 |
| Msa0810270 | Msa1221330 | 0.803703 | 3.070915e-49 | -8.615850e-47 |
| Msa0810270 | Msa1225100 | 0.841495 | 4.590753e-58 | -8.615850e-47 |
| Msa0810270 | Msa1246360 | 0.809498 | 1.837009e-50 | -8.615850e-47 |
| Msa0810270 | Msa1280150 | 0.820465 | 6.760696e-53 | -8.615850e-47 |
| Msa0810270 | Msa1286800 | 0.808755 | 2.650229e-50 | -8.615850e-47 |
| Msa0810270 | Msa1304890 | -0.813976 | 1.948796e-51 | -8.615850e-47 |
| Msa0810270 | Msa1323690 | 0.821585 | 3.733552e-53 | -8.615850e-47 |
| Msa0810270 | Msa1329870 | 0.840469 | 8.532610e-58 | -8.615850e-47 |
| Msa0810270 | Msa1330180 | 0.810773 | 9.758031e-51 | -8.615850e-47 |
| Msa0810270 | Msa1338400 | 0.816818 | 4.546329e-52 | -8.615850e-47 |
| Msa0810270 | Msa1346660 | 0.803382 | 3.580774e-49 | -8.615850e-47 |
| Msa0810270 | Msa1379590 | 0.808349 | 3.235137e-50 | -8.615850e-47 |
| Msa0810270 | Msa1394310 | 0.812572 | 3.963513e-51 | -8.615850e-47 |
| Msa0810270 | Msa1396130 | 0.815779 | 7.761832e-52 | -8.615850e-47 |
| Msa0810270 | Msa1400930 | 0.800121 | 1.672125e-48 | -8.615850e-47 |
| Msa0810270 | Msa1405220 | 0.835006 | 2.157030e-56 | -8.615850e-47 |
| Msa0810270 | Msa1418240 | 0.802414 | 5.673894e-49 | -8.615850e-47 |
| Msa0810270 | Msa1423780 | 0.801698 | 7.963017e-49 | -8.615850e-47 |
| Msa0810270 | Msa1424630 | 0.838036 | 3.650527e-57 | -8.615850e-47 |
| Msa0810270 | Msa1424640 | 0.804535 | 2.061763e-49 | -8.615850e-47 |
| Msa0810270 | Msa1431750 | 0.814517 | 1.480003e-51 | -8.615850e-47 |
| Msa0810270 | Msa1453360 | 0.803413 | 3.527338e-49 | -8.615850e-47 |
| Msa0810270 | Msa1456230 | 0.823069 | 1.688636e-53 | -8.615850e-47 |
| Msa0810270 | Msa1457160 | 0.808057 | 3.733345e-50 | -8.615850e-47 |
| Msa0810270 | Msa1458340 | 0.837615 | 4.683192e-57 | -8.615850e-47 |
| Msa0810270 | Msa1462360 | 0.804398 | 2.201691e-49 | -8.615850e-47 |
| Msa0131770 | Msa0810270 | 0.820830 | 5.574638e-53 | -8.615850e-47 |
| Msa0142460 | Msa0810270 | 0.818127 | 2.305425e-52 | -8.615850e-47 |
| Msa0150230 | Msa0810270 | 0.807374 | 5.216210e-50 | -8.615850e-47 |
| Msa0178510 | Msa0810270 | 0.805596 | 1.236669e-49 | -8.615850e-47 |
| Msa0186950 | Msa0810270 | 0.803561 | 3.286451e-49 | -8.615850e-47 |
| Msa0187830 | Msa0810270 | 0.848035 | 7.920315e-60 | -8.615850e-47 |
| Msa0201570 | Msa0810270 | 0.800614 | 1.327131e-48 | -8.615850e-47 |
| Msa0202800 | Msa0810270 | 0.810711 | 1.006452e-50 | -8.615850e-47 |
| Msa0204840 | Msa0810270 | 0.800401 | 1.466316e-48 | -8.615850e-47 |
| Msa0207350 | Msa0810270 | 0.801480 | 8.828793e-49 | -8.615850e-47 |
| Msa0220730 | Msa0810270 | 0.833845 | 4.220437e-56 | -8.615850e-47 |
| Msa0227340 | Msa0810270 | 0.801390 | 9.212029e-49 | -8.615850e-47 |
| Msa0382370 | Msa0810270 | 0.803511 | 3.366320e-49 | -8.615850e-47 |
| Msa0382490 | Msa0810270 | 0.818443 | 1.954574e-52 | -8.615850e-47 |
| Msa0393620 | Msa0810270 | 0.809743 | 1.626975e-50 | -8.615850e-47 |
| Msa0394120 | Msa0810270 | 0.810476 | 1.131099e-50 | -8.615850e-47 |
| Msa0394470 | Msa0810270 | 0.801994 | 6.922704e-49 | -8.615850e-47 |
| Msa0398200 | Msa0810270 | 0.815468 | 9.101551e-52 | -8.615850e-47 |
| Msa0417330 | Msa0810270 | 0.813828 | 2.100310e-51 | -8.615850e-47 |
| Msa0422180 | Msa0810270 | 0.811546 | 6.631443e-51 | -8.615850e-47 |
| Msa0432160 | Msa0810270 | 0.831011 | 2.125466e-55 | -8.615850e-47 |
| Msa0432670 | Msa0810270 | 0.839475 | 1.550092e-57 | -8.615850e-47 |
| Msa0458740 | Msa0810270 | 0.823939 | 1.057476e-53 | -8.615850e-47 |
| Msa0468410 | Msa0810270 | 0.804598 | 2.000417e-49 | -8.615850e-47 |
| Msa0476680 | Msa0810270 | 0.829923 | 3.921680e-55 | -8.615850e-47 |
| Msa0240270 | Msa0810270 | 0.822829 | 1.920917e-53 | -8.615850e-47 |
| Msa0264830 | Msa0810270 | 0.815912 | 7.250236e-52 | -8.615850e-47 |
| Msa0271770 | Msa0810270 | 0.810202 | 1.296113e-50 | -8.615850e-47 |
| Msa0277420 | Msa0810270 | 0.813146 | 2.967380e-51 | -8.615850e-47 |
| Msa0282720 | Msa0810270 | 0.808477 | 3.037731e-50 | -8.615850e-47 |
| Msa0290870 | Msa0810270 | 0.806337 | 8.641092e-50 | -8.615850e-47 |
| Msa0302870 | Msa0810270 | 0.805534 | 1.274114e-49 | -8.615850e-47 |
| Msa0312530 | Msa0810270 | 0.800948 | 1.134222e-48 | -8.615850e-47 |
| Msa0317970 | Msa0810270 | 0.804636 | 1.963882e-49 | -8.615850e-47 |
| Msa0340340 | Msa0810270 | 0.813973 | 1.951452e-51 | -8.615850e-47 |
| Msa0347750 | Msa0810270 | 0.801754 | 7.754673e-49 | -8.615850e-47 |
| Msa0521010 | Msa0810270 | 0.828831 | 7.223470e-55 | -8.615850e-47 |
| Msa0526070 | Msa0810270 | -0.823767 | 1.159978e-53 | -8.615850e-47 |
| Msa0549890 | Msa0810270 | 0.826362 | 2.828862e-54 | -8.615850e-47 |
| Msa0559500 | Msa0810270 | 0.815708 | 8.049152e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810270 | MtrunA17_Chr5g0426441 | 95.318 | 299 | 13 | 1 | 6 | 303 | 648 | 946 | 0.0 | 588 |
| Msa0810270 | MtrunA17_Chr5g0426441 | 92.739 | 303 | 22 | 0 | 1 | 303 | 25 | 327 | 0.0 | 582 |
| Msa0810270 | MtrunA17_Chr5g0426441 | 93.960 | 298 | 18 | 0 | 6 | 303 | 339 | 636 | 0.0 | 582 |
| Msa0810270 | MtrunA17_Chr3g0116001 | 77.895 | 285 | 49 | 4 | 20 | 303 | 21 | 292 | 4.04e-162 | 453 |
| Msa0810270 | MtrunA17_Chr3g0116011 | 76.842 | 285 | 52 | 4 | 20 | 303 | 21 | 292 | 1.09e-160 | 450 |
| Msa0810270 | MtrunA17_Chr3g0115951 | 70.569 | 299 | 83 | 4 | 9 | 303 | 8 | 305 | 2.11e-146 | 414 |
| Msa0810270 | MtrunA17_Chr4g0050321 | 60.440 | 273 | 94 | 3 | 31 | 303 | 30 | 288 | 8.05e-115 | 333 |
| Msa0810270 | MtrunA17_Chr2g0279311 | 52.769 | 307 | 125 | 8 | 1 | 303 | 2 | 292 | 9.33e-113 | 328 |
| Msa0810270 | MtrunA17_Chr4g0018171 | 34.564 | 298 | 173 | 8 | 23 | 309 | 52 | 338 | 5.14e-46 | 159 |
| Msa0810270 | MtrunA17_Chr1g0188071 | 34.810 | 316 | 184 | 8 | 6 | 309 | 33 | 338 | 6.67e-45 | 156 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810270 | AT4G08950.1 | 71.080 | 287 | 75 | 5 | 22 | 303 | 19 | 302 | 2.48e-142 | 404 |
| Msa0810270 | AT1G35140.1 | 62.706 | 303 | 107 | 2 | 1 | 303 | 1 | 297 | 1.43e-135 | 387 |
| Msa0810270 | AT5G64260.1 | 56.393 | 305 | 119 | 6 | 1 | 303 | 1 | 293 | 3.47e-116 | 337 |
| Msa0810270 | AT5G09440.1 | 59.160 | 262 | 78 | 7 | 44 | 303 | 32 | 266 | 2.43e-96 | 286 |
| Msa0810270 | AT5G51550.1 | 35.640 | 289 | 164 | 8 | 23 | 300 | 42 | 319 | 1.74e-46 | 160 |
| Msa0810270 | AT2G35150.1 | 33.758 | 314 | 185 | 9 | 1 | 300 | 1 | 305 | 4.71e-41 | 145 |
| Msa0810270 | AT3G02970.1 | 30.241 | 291 | 165 | 8 | 45 | 303 | 36 | 320 | 1.02e-39 | 142 |
| Msa0810270 | AT2G17230.1 | 32.653 | 294 | 176 | 9 | 19 | 300 | 62 | 345 | 1.44e-38 | 140 |
Find 75 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTCACCAACCAATTTA+TGG | 0.182864 | 5_3:+38516765 | Msa0810270:CDS |
| TCTTATGGTGCACACATAAA+TGG | 0.215092 | 5_3:+38516672 | Msa0810270:CDS |
| TCAAGACCCACATCATTATT+TGG | 0.238207 | 5_3:-38516813 | None:intergenic |
| GGAACCCATGGTTCTTCTTA+TGG | 0.283880 | 5_3:+38516657 | Msa0810270:CDS |
| AATCAGTTATGATGGCTCTT+TGG | 0.297339 | 5_3:-38516344 | None:intergenic |
| GCACTTTGTGGACCATAAAT+TGG | 0.298303 | 5_3:-38516777 | None:intergenic |
| GCTTCCAAAGGAGCTTCTTT+TGG | 0.308698 | 5_3:-38516912 | None:intergenic |
| CTCGACGAGAATTATTCTTT+AGG | 0.312121 | 5_3:+38516513 | Msa0810270:CDS |
| TACAATGCAAATGGTGATAA+TGG | 0.322947 | 5_3:+38517023 | Msa0810270:CDS |
| TTGATGCGAGTTTAAGGATT+TGG | 0.323024 | 5_3:-38516554 | None:intergenic |
| GAAACAAGTTCGCGTACATT+TGG | 0.347338 | 5_3:+38516700 | Msa0810270:CDS |
| GCAGTGAAATTGTGAGAAAA+AGG | 0.351171 | 5_3:-38516194 | None:intergenic |
| GTTAACTGATTTCTTGTTGT+TGG | 0.351760 | 5_3:-38516463 | None:intergenic |
| AGCTCCTTTGGAAGCTGCTT+CGG | 0.362716 | 5_3:+38516920 | Msa0810270:CDS |
| ATCAGTTATGATGGCTCTTT+GGG | 0.364014 | 5_3:-38516343 | None:intergenic |
| AGGACCAAAAGAAGCTCCTT+TGG | 0.376105 | 5_3:+38516908 | Msa0810270:CDS |
| CCATAAATTGGTTGGTGAAA+TGG | 0.381983 | 5_3:-38516765 | None:intergenic |
| AAATCTCAATCAACCTCATT+TGG | 0.382865 | 5_3:+38516301 | Msa0810270:CDS |
| GGAACTGTAACGAATCCTTT+TGG | 0.404954 | 5_3:+38516870 | Msa0810270:CDS |
| AAACAAGTTCGCGTACATTT+GGG | 0.409022 | 5_3:+38516701 | Msa0810270:CDS |
| CATTATTTGGTGCAACCAAT+GGG | 0.411373 | 5_3:-38516800 | None:intergenic |
| GGAGCTTATCCTGGTTATGC+TGG | 0.426719 | 5_3:+38516966 | Msa0810270:CDS |
| GGTATTGAAATTTAAGTTGT+TGG | 0.428857 | 5_3:-38516254 | None:intergenic |
| GAAGCTGCTTCGGCTTGTAC+TGG | 0.438736 | 5_3:+38516930 | Msa0810270:CDS |
| CTAACACATCAACAGCTGTT+AGG | 0.440071 | 5_3:-38516608 | None:intergenic |
| GATGTGGTTGTTCCTTGTTT+AGG | 0.441091 | 5_3:-38516387 | None:intergenic |
| TCATTATTTGGTGCAACCAA+TGG | 0.455875 | 5_3:-38516801 | None:intergenic |
| TGTACTGGTGTTTATGCTAA+AGG | 0.456460 | 5_3:+38516945 | Msa0810270:CDS |
| TGAAAATATCCATTACCAAA+AGG | 0.461381 | 5_3:-38516885 | None:intergenic |
| CACTGAGGAGAGGACCTTTG+TGG | 0.465051 | 5_3:-38516275 | None:intergenic |
| ATTTCTTGTTGTTGGTGAGT+TGG | 0.466156 | 5_3:-38516455 | None:intergenic |
| AATAATGATGTGGGTCTTGA+CGG | 0.466291 | 5_3:+38516816 | Msa0810270:CDS |
| GCAACCAATGGGGCACTTTG+TGG | 0.467257 | 5_3:-38516789 | None:intergenic |
| ATCCTTAAACTCGCATCAAA+AGG | 0.475704 | 5_3:+38516558 | Msa0810270:CDS |
| TCAATCAACCTCATTTGGTA+TGG | 0.491730 | 5_3:+38516306 | Msa0810270:CDS |
| GAGTACCTAGTGAGAGAGCT+AGG | 0.494212 | 5_3:-38516485 | None:intergenic |
| TATGCTAAAGGAGCTTATCC+TGG | 0.497752 | 5_3:+38516957 | Msa0810270:CDS |
| AAGTATTTGTTGCCTGCGAT+TGG | 0.499722 | 5_3:+38517050 | Msa0810270:CDS |
| GCTGTTGATGTGTTAGTTGA+CGG | 0.514424 | 5_3:+38516615 | Msa0810270:CDS |
| GTTATGATGGCTCTTTGGGA+TGG | 0.520405 | 5_3:-38516339 | None:intergenic |
| GGTTATGAAATCAGTTATGA+TGG | 0.523193 | 5_3:-38516352 | None:intergenic |
| GAGCTTATCCTGGTTATGCT+GGG | 0.526776 | 5_3:+38516967 | Msa0810270:CDS |
| TGGTCCACAAAGTGCCCCAT+TGG | 0.532886 | 5_3:+38516785 | Msa0810270:CDS |
| TCCTTGTTTAGGAGAAGAGA+GGG | 0.537003 | 5_3:-38516376 | None:intergenic |
| TTCCACCACGTGGCAACGGA+TGG | 0.537811 | 5_3:-38516414 | None:intergenic |
| TTCCTTGTTTAGGAGAAGAG+AGG | 0.538941 | 5_3:-38516377 | None:intergenic |
| TGATTTCCACCACGTGGCAA+CGG | 0.550537 | 5_3:-38516418 | None:intergenic |
| ATGCAAATGGTGATAATGGA+AGG | 0.560708 | 5_3:+38517027 | Msa0810270:CDS |
| AAGTTCGCGTACATTTGGGT+TGG | 0.562836 | 5_3:+38516705 | Msa0810270:CDS |
| AGTTTCTTCATACCAATCGC+AGG | 0.563583 | 5_3:-38517062 | None:intergenic |
| TCAAGTAGGTGTGGAACCCA+TGG | 0.564282 | 5_3:+38516645 | Msa0810270:CDS |
| GTTAACCTAGCTCTCTCACT+AGG | 0.568709 | 5_3:+38516480 | Msa0810270:CDS |
| AAAAGGTCCCCAGCATAACC+AGG | 0.577751 | 5_3:-38516975 | None:intergenic |
| TGATGTGGGTCTTGACGGAA+TGG | 0.585857 | 5_3:+38516821 | Msa0810270:CDS |
| GGTGCTAGTTACAATGCAAA+TGG | 0.592911 | 5_3:+38517014 | Msa0810270:CDS |
| AATTCAGAGACACAATGTGC+TGG | 0.594460 | 5_3:+38516729 | Msa0810270:CDS |
| AACCATCCGTTGCCACGTGG+TGG | 0.604103 | 5_3:+38516412 | Msa0810270:CDS |
| CAAGCCGAAGCAGCTTCCAA+AGG | 0.609562 | 5_3:-38516924 | None:intergenic |
| TTTGTGGACCATAAATTGGT+TGG | 0.611426 | 5_3:-38516773 | None:intergenic |
| AGCTGTTAGGACAACATCGA+TGG | 0.622467 | 5_3:-38516595 | None:intergenic |
| TTGTTTAGGAGAAGAGAGGG+AGG | 0.623459 | 5_3:-38516373 | None:intergenic |
| CTTAAATTTCAATACCACAA+AGG | 0.628204 | 5_3:+38516261 | Msa0810270:CDS |
| AGCTTATCCTGGTTATGCTG+GGG | 0.628401 | 5_3:+38516968 | Msa0810270:CDS |
| GGTTGCACCAAATAATGATG+TGG | 0.630115 | 5_3:+38516806 | Msa0810270:CDS |
| ATGGTGCACACATAAATGGA+AGG | 0.634156 | 5_3:+38516676 | Msa0810270:CDS |
| GTGCACCATAAGAAGAACCA+TGG | 0.640198 | 5_3:-38516662 | None:intergenic |
| TGCACCATAAGAAGAACCAT+GGG | 0.641337 | 5_3:-38516661 | None:intergenic |
| TTCGGTTGATTTCCACCACG+TGG | 0.652662 | 5_3:-38516424 | None:intergenic |
| TCCCTCTCTTCTCCTAAACA+AGG | 0.657496 | 5_3:+38516375 | Msa0810270:CDS |
| CACAAAGGTCCTCTCCTCAG+TGG | 0.675763 | 5_3:+38516276 | Msa0810270:CDS |
| CACAACCATCCGTTGCCACG+TGG | 0.685091 | 5_3:+38516409 | Msa0810270:CDS |
| ATTATTTGGTGCAACCAATG+GGG | 0.687486 | 5_3:-38516799 | None:intergenic |
| GTTGCACCAAATAATGATGT+GGG | 0.702712 | 5_3:+38516807 | Msa0810270:CDS |
| GGCAACGGATGGTTGTGATG+TGG | 0.703046 | 5_3:-38516403 | None:intergenic |
| AATGTGCTGGTCAATGCGCG+TGG | 0.729505 | 5_3:+38516742 | Msa0810270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GGTATTGAAATTTAAGTTGT+TGG | - | chr5_3:38516257-38516276 | None:intergenic | 25.0% |
| ! | CTTAAATTTCAATACCACAA+AGG | + | chr5_3:38516261-38516280 | Msa0810270:CDS | 25.0% |
| !! | TAAATTTTCCATACCAAATG+AGG | - | chr5_3:38516317-38516336 | None:intergenic | 25.0% |
| ! | TGAAAATATCCATTACCAAA+AGG | - | chr5_3:38516888-38516907 | None:intergenic | 25.0% |
| !!! | TTTGGTAATGGATATTTTCA+AGG | + | chr5_3:38516888-38516907 | Msa0810270:CDS | 25.0% |
| !!! | GGTATTGAAATTTAAGTTGT+TGG | - | chr5_3:38516257-38516276 | None:intergenic | 25.0% |
| ! | CTTAAATTTCAATACCACAA+AGG | + | chr5_3:38516261-38516280 | Msa0810270:CDS | 25.0% |
| !! | TAAATTTTCCATACCAAATG+AGG | - | chr5_3:38516317-38516336 | None:intergenic | 25.0% |
| ! | TGAAAATATCCATTACCAAA+AGG | - | chr5_3:38516888-38516907 | None:intergenic | 25.0% |
| !!! | TTTGGTAATGGATATTTTCA+AGG | + | chr5_3:38516888-38516907 | Msa0810270:CDS | 25.0% |
| CAGTGAAATTGTGAGAAAAA+GGG | - | chr5_3:38516196-38516215 | None:intergenic | 30.0% | |
| AAATCTCAATCAACCTCATT+TGG | + | chr5_3:38516301-38516320 | Msa0810270:CDS | 30.0% | |
| GGTTATGAAATCAGTTATGA+TGG | - | chr5_3:38516355-38516374 | None:intergenic | 30.0% | |
| !!! | GGTGAGTTGGTAATATTTTT+CGG | - | chr5_3:38516445-38516464 | None:intergenic | 30.0% |
| ! | GTTAACTGATTTCTTGTTGT+TGG | - | chr5_3:38516466-38516485 | None:intergenic | 30.0% |
| !!! | AATGTTGCTAGTCTTTTAAC+TGG | + | chr5_3:38516849-38516868 | Msa0810270:CDS | 30.0% |
| !!! | CACTTGTTTTATCGATCAAA+AGG | - | chr5_3:38516995-38517014 | None:intergenic | 30.0% |
| ! | CTTTTGATCGATAAAACAAG+TGG | + | chr5_3:38516993-38517012 | Msa0810270:CDS | 30.0% |
| TACAATGCAAATGGTGATAA+TGG | + | chr5_3:38517023-38517042 | Msa0810270:CDS | 30.0% | |
| CAGTGAAATTGTGAGAAAAA+GGG | - | chr5_3:38516196-38516215 | None:intergenic | 30.0% | |
| AAATCTCAATCAACCTCATT+TGG | + | chr5_3:38516301-38516320 | Msa0810270:CDS | 30.0% | |
| GGTTATGAAATCAGTTATGA+TGG | - | chr5_3:38516355-38516374 | None:intergenic | 30.0% | |
| !!! | GGTGAGTTGGTAATATTTTT+CGG | - | chr5_3:38516445-38516464 | None:intergenic | 30.0% |
| ! | GTTAACTGATTTCTTGTTGT+TGG | - | chr5_3:38516466-38516485 | None:intergenic | 30.0% |
| !!! | AATGTTGCTAGTCTTTTAAC+TGG | + | chr5_3:38516849-38516868 | Msa0810270:CDS | 30.0% |
| !!! | CACTTGTTTTATCGATCAAA+AGG | - | chr5_3:38516995-38517014 | None:intergenic | 30.0% |
| ! | CTTTTGATCGATAAAACAAG+TGG | + | chr5_3:38516993-38517012 | Msa0810270:CDS | 30.0% |
| TACAATGCAAATGGTGATAA+TGG | + | chr5_3:38517023-38517042 | Msa0810270:CDS | 30.0% | |
| GCAGTGAAATTGTGAGAAAA+AGG | - | chr5_3:38516197-38516216 | None:intergenic | 35.0% | |
| TCAATCAACCTCATTTGGTA+TGG | + | chr5_3:38516306-38516325 | Msa0810270:CDS | 35.0% | |
| ATCAGTTATGATGGCTCTTT+GGG | - | chr5_3:38516346-38516365 | None:intergenic | 35.0% | |
| AATCAGTTATGATGGCTCTT+TGG | - | chr5_3:38516347-38516366 | None:intergenic | 35.0% | |
| !! | ATTTCTTGTTGTTGGTGAGT+TGG | - | chr5_3:38516458-38516477 | None:intergenic | 35.0% |
| CTCGACGAGAATTATTCTTT+AGG | + | chr5_3:38516513-38516532 | Msa0810270:CDS | 35.0% | |
| TTGATGCGAGTTTAAGGATT+TGG | - | chr5_3:38516557-38516576 | None:intergenic | 35.0% | |
| ATCCTTAAACTCGCATCAAA+AGG | + | chr5_3:38516558-38516577 | Msa0810270:CDS | 35.0% | |
| ! | TTGACGGTTTTTGTTCAAGT+AGG | + | chr5_3:38516631-38516650 | Msa0810270:CDS | 35.0% |
| TCTTATGGTGCACACATAAA+TGG | + | chr5_3:38516672-38516691 | Msa0810270:CDS | 35.0% | |
| AAACAAGTTCGCGTACATTT+GGG | + | chr5_3:38516701-38516720 | Msa0810270:CDS | 35.0% | |
| !! | CCATAAATTGGTTGGTGAAA+TGG | - | chr5_3:38516768-38516787 | None:intergenic | 35.0% |
| CCATTTCACCAACCAATTTA+TGG | + | chr5_3:38516765-38516784 | Msa0810270:CDS | 35.0% | |
| TTTGTGGACCATAAATTGGT+TGG | - | chr5_3:38516776-38516795 | None:intergenic | 35.0% | |
| !! | ATTATTTGGTGCAACCAATG+GGG | - | chr5_3:38516802-38516821 | None:intergenic | 35.0% |
| !! | CATTATTTGGTGCAACCAAT+GGG | - | chr5_3:38516803-38516822 | None:intergenic | 35.0% |
| !! | TCATTATTTGGTGCAACCAA+TGG | - | chr5_3:38516804-38516823 | None:intergenic | 35.0% |
| GTTGCACCAAATAATGATGT+GGG | + | chr5_3:38516807-38516826 | Msa0810270:CDS | 35.0% | |
| TCAAGACCCACATCATTATT+TGG | - | chr5_3:38516816-38516835 | None:intergenic | 35.0% | |
| AATAATGATGTGGGTCTTGA+CGG | + | chr5_3:38516816-38516835 | Msa0810270:CDS | 35.0% | |
| ! | GTAACGAATCCTTTTGGTAA+TGG | + | chr5_3:38516876-38516895 | Msa0810270:CDS | 35.0% |
| ! | TGTACTGGTGTTTATGCTAA+AGG | + | chr5_3:38516945-38516964 | Msa0810270:CDS | 35.0% |
| !! | ATGCAAATGGTGATAATGGA+AGG | + | chr5_3:38517027-38517046 | Msa0810270:CDS | 35.0% |
| GCAGTGAAATTGTGAGAAAA+AGG | - | chr5_3:38516197-38516216 | None:intergenic | 35.0% | |
| TCAATCAACCTCATTTGGTA+TGG | + | chr5_3:38516306-38516325 | Msa0810270:CDS | 35.0% | |
| ATCAGTTATGATGGCTCTTT+GGG | - | chr5_3:38516346-38516365 | None:intergenic | 35.0% | |
| AATCAGTTATGATGGCTCTT+TGG | - | chr5_3:38516347-38516366 | None:intergenic | 35.0% | |
| !! | ATTTCTTGTTGTTGGTGAGT+TGG | - | chr5_3:38516458-38516477 | None:intergenic | 35.0% |
| CTCGACGAGAATTATTCTTT+AGG | + | chr5_3:38516513-38516532 | Msa0810270:CDS | 35.0% | |
| TTGATGCGAGTTTAAGGATT+TGG | - | chr5_3:38516557-38516576 | None:intergenic | 35.0% | |
| ATCCTTAAACTCGCATCAAA+AGG | + | chr5_3:38516558-38516577 | Msa0810270:CDS | 35.0% | |
| ! | TTGACGGTTTTTGTTCAAGT+AGG | + | chr5_3:38516631-38516650 | Msa0810270:CDS | 35.0% |
| TCTTATGGTGCACACATAAA+TGG | + | chr5_3:38516672-38516691 | Msa0810270:CDS | 35.0% | |
| AAACAAGTTCGCGTACATTT+GGG | + | chr5_3:38516701-38516720 | Msa0810270:CDS | 35.0% | |
| !! | CCATAAATTGGTTGGTGAAA+TGG | - | chr5_3:38516768-38516787 | None:intergenic | 35.0% |
| CCATTTCACCAACCAATTTA+TGG | + | chr5_3:38516765-38516784 | Msa0810270:CDS | 35.0% | |
| TTTGTGGACCATAAATTGGT+TGG | - | chr5_3:38516776-38516795 | None:intergenic | 35.0% | |
| !! | ATTATTTGGTGCAACCAATG+GGG | - | chr5_3:38516802-38516821 | None:intergenic | 35.0% |
| !! | CATTATTTGGTGCAACCAAT+GGG | - | chr5_3:38516803-38516822 | None:intergenic | 35.0% |
| !! | TCATTATTTGGTGCAACCAA+TGG | - | chr5_3:38516804-38516823 | None:intergenic | 35.0% |
| GTTGCACCAAATAATGATGT+GGG | + | chr5_3:38516807-38516826 | Msa0810270:CDS | 35.0% | |
| TCAAGACCCACATCATTATT+TGG | - | chr5_3:38516816-38516835 | None:intergenic | 35.0% | |
| AATAATGATGTGGGTCTTGA+CGG | + | chr5_3:38516816-38516835 | Msa0810270:CDS | 35.0% | |
| ! | GTAACGAATCCTTTTGGTAA+TGG | + | chr5_3:38516876-38516895 | Msa0810270:CDS | 35.0% |
| ! | TGTACTGGTGTTTATGCTAA+AGG | + | chr5_3:38516945-38516964 | Msa0810270:CDS | 35.0% |
| !! | ATGCAAATGGTGATAATGGA+AGG | + | chr5_3:38517027-38517046 | Msa0810270:CDS | 35.0% |
| ! | TGATTGAGATTTTGCCACTG+AGG | - | chr5_3:38516293-38516312 | None:intergenic | 40.0% |
| ! | TCCTTGTTTAGGAGAAGAGA+GGG | - | chr5_3:38516379-38516398 | None:intergenic | 40.0% |
| ! | TTCCTTGTTTAGGAGAAGAG+AGG | - | chr5_3:38516380-38516399 | None:intergenic | 40.0% |
| ! | GATGTGGTTGTTCCTTGTTT+AGG | - | chr5_3:38516390-38516409 | None:intergenic | 40.0% |
| ! | GTCCTTTTGATGCGAGTTTA+AGG | - | chr5_3:38516563-38516582 | None:intergenic | 40.0% |
| CTAACACATCAACAGCTGTT+AGG | - | chr5_3:38516611-38516630 | None:intergenic | 40.0% | |
| GCTGTTGATGTGTTAGTTGA+CGG | + | chr5_3:38516615-38516634 | Msa0810270:CDS | 40.0% | |
| ! | GGTTTTTGTTCAAGTAGGTG+TGG | + | chr5_3:38516636-38516655 | Msa0810270:CDS | 40.0% |
| TGCACCATAAGAAGAACCAT+GGG | - | chr5_3:38516664-38516683 | None:intergenic | 40.0% | |
| ATGGTGCACACATAAATGGA+AGG | + | chr5_3:38516676-38516695 | Msa0810270:CDS | 40.0% | |
| GAAACAAGTTCGCGTACATT+TGG | + | chr5_3:38516700-38516719 | Msa0810270:CDS | 40.0% | |
| AATTCAGAGACACAATGTGC+TGG | + | chr5_3:38516729-38516748 | Msa0810270:CDS | 40.0% | |
| GCACTTTGTGGACCATAAAT+TGG | - | chr5_3:38516780-38516799 | None:intergenic | 40.0% | |
| GGTTGCACCAAATAATGATG+TGG | + | chr5_3:38516806-38516825 | Msa0810270:CDS | 40.0% | |
| ! | GGAACTGTAACGAATCCTTT+TGG | + | chr5_3:38516870-38516889 | Msa0810270:CDS | 40.0% |
| TATGCTAAAGGAGCTTATCC+TGG | + | chr5_3:38516957-38516976 | Msa0810270:CDS | 40.0% | |
| GGTGCTAGTTACAATGCAAA+TGG | + | chr5_3:38517014-38517033 | Msa0810270:CDS | 40.0% | |
| ! | AAGTATTTGTTGCCTGCGAT+TGG | + | chr5_3:38517050-38517069 | Msa0810270:CDS | 40.0% |
| AGTTTCTTCATACCAATCGC+AGG | - | chr5_3:38517065-38517084 | None:intergenic | 40.0% | |
| ! | TGATTGAGATTTTGCCACTG+AGG | - | chr5_3:38516293-38516312 | None:intergenic | 40.0% |
| ! | TCCTTGTTTAGGAGAAGAGA+GGG | - | chr5_3:38516379-38516398 | None:intergenic | 40.0% |
| ! | TTCCTTGTTTAGGAGAAGAG+AGG | - | chr5_3:38516380-38516399 | None:intergenic | 40.0% |
| ! | GATGTGGTTGTTCCTTGTTT+AGG | - | chr5_3:38516390-38516409 | None:intergenic | 40.0% |
| ! | GTCCTTTTGATGCGAGTTTA+AGG | - | chr5_3:38516563-38516582 | None:intergenic | 40.0% |
| CTAACACATCAACAGCTGTT+AGG | - | chr5_3:38516611-38516630 | None:intergenic | 40.0% | |
| GCTGTTGATGTGTTAGTTGA+CGG | + | chr5_3:38516615-38516634 | Msa0810270:CDS | 40.0% | |
| ! | GGTTTTTGTTCAAGTAGGTG+TGG | + | chr5_3:38516636-38516655 | Msa0810270:CDS | 40.0% |
| TGCACCATAAGAAGAACCAT+GGG | - | chr5_3:38516664-38516683 | None:intergenic | 40.0% | |
| ATGGTGCACACATAAATGGA+AGG | + | chr5_3:38516676-38516695 | Msa0810270:CDS | 40.0% | |
| GAAACAAGTTCGCGTACATT+TGG | + | chr5_3:38516700-38516719 | Msa0810270:CDS | 40.0% | |
| AATTCAGAGACACAATGTGC+TGG | + | chr5_3:38516729-38516748 | Msa0810270:CDS | 40.0% | |
| GCACTTTGTGGACCATAAAT+TGG | - | chr5_3:38516780-38516799 | None:intergenic | 40.0% | |
| GGTTGCACCAAATAATGATG+TGG | + | chr5_3:38516806-38516825 | Msa0810270:CDS | 40.0% | |
| ! | GGAACTGTAACGAATCCTTT+TGG | + | chr5_3:38516870-38516889 | Msa0810270:CDS | 40.0% |
| TATGCTAAAGGAGCTTATCC+TGG | + | chr5_3:38516957-38516976 | Msa0810270:CDS | 40.0% | |
| GGTGCTAGTTACAATGCAAA+TGG | + | chr5_3:38517014-38517033 | Msa0810270:CDS | 40.0% | |
| ! | AAGTATTTGTTGCCTGCGAT+TGG | + | chr5_3:38517050-38517069 | Msa0810270:CDS | 40.0% |
| AGTTTCTTCATACCAATCGC+AGG | - | chr5_3:38517065-38517084 | None:intergenic | 40.0% | |
| ! | GTTATGATGGCTCTTTGGGA+TGG | - | chr5_3:38516342-38516361 | None:intergenic | 45.0% |
| TTGTTTAGGAGAAGAGAGGG+AGG | - | chr5_3:38516376-38516395 | None:intergenic | 45.0% | |
| TCCCTCTCTTCTCCTAAACA+AGG | + | chr5_3:38516375-38516394 | Msa0810270:CDS | 45.0% | |
| ! | GTTAACCTAGCTCTCTCACT+AGG | + | chr5_3:38516480-38516499 | Msa0810270:CDS | 45.0% |
| AGCTGTTAGGACAACATCGA+TGG | - | chr5_3:38516598-38516617 | None:intergenic | 45.0% | |
| GGAACCCATGGTTCTTCTTA+TGG | + | chr5_3:38516657-38516676 | Msa0810270:CDS | 45.0% | |
| GTGCACCATAAGAAGAACCA+TGG | - | chr5_3:38516665-38516684 | None:intergenic | 45.0% | |
| AAGTTCGCGTACATTTGGGT+TGG | + | chr5_3:38516705-38516724 | Msa0810270:CDS | 45.0% | |
| AGGACCAAAAGAAGCTCCTT+TGG | + | chr5_3:38516908-38516927 | Msa0810270:CDS | 45.0% | |
| ! | GCTTCCAAAGGAGCTTCTTT+TGG | - | chr5_3:38516915-38516934 | None:intergenic | 45.0% |
| GAGCTTATCCTGGTTATGCT+GGG | + | chr5_3:38516967-38516986 | Msa0810270:CDS | 45.0% | |
| AGCTTATCCTGGTTATGCTG+GGG | + | chr5_3:38516968-38516987 | Msa0810270:CDS | 45.0% | |
| ! | GTTATGATGGCTCTTTGGGA+TGG | - | chr5_3:38516342-38516361 | None:intergenic | 45.0% |
| TTGTTTAGGAGAAGAGAGGG+AGG | - | chr5_3:38516376-38516395 | None:intergenic | 45.0% | |
| TCCCTCTCTTCTCCTAAACA+AGG | + | chr5_3:38516375-38516394 | Msa0810270:CDS | 45.0% | |
| ! | GTTAACCTAGCTCTCTCACT+AGG | + | chr5_3:38516480-38516499 | Msa0810270:CDS | 45.0% |
| AGCTGTTAGGACAACATCGA+TGG | - | chr5_3:38516598-38516617 | None:intergenic | 45.0% | |
| GGAACCCATGGTTCTTCTTA+TGG | + | chr5_3:38516657-38516676 | Msa0810270:CDS | 45.0% | |
| GTGCACCATAAGAAGAACCA+TGG | - | chr5_3:38516665-38516684 | None:intergenic | 45.0% | |
| AAGTTCGCGTACATTTGGGT+TGG | + | chr5_3:38516705-38516724 | Msa0810270:CDS | 45.0% | |
| AGGACCAAAAGAAGCTCCTT+TGG | + | chr5_3:38516908-38516927 | Msa0810270:CDS | 45.0% | |
| ! | GCTTCCAAAGGAGCTTCTTT+TGG | - | chr5_3:38516915-38516934 | None:intergenic | 45.0% |
| GAGCTTATCCTGGTTATGCT+GGG | + | chr5_3:38516967-38516986 | Msa0810270:CDS | 45.0% | |
| AGCTTATCCTGGTTATGCTG+GGG | + | chr5_3:38516968-38516987 | Msa0810270:CDS | 45.0% | |
| ! | GAGATTTTGCCACTGAGGAG+AGG | - | chr5_3:38516288-38516307 | None:intergenic | 50.0% |
| TGATTTCCACCACGTGGCAA+CGG | - | chr5_3:38516421-38516440 | None:intergenic | 50.0% | |
| ! | TTCGGTTGATTTCCACCACG+TGG | - | chr5_3:38516427-38516446 | None:intergenic | 50.0% |
| GAGTACCTAGTGAGAGAGCT+AGG | - | chr5_3:38516488-38516507 | None:intergenic | 50.0% | |
| TCAAGTAGGTGTGGAACCCA+TGG | + | chr5_3:38516645-38516664 | Msa0810270:CDS | 50.0% | |
| TGATGTGGGTCTTGACGGAA+TGG | + | chr5_3:38516821-38516840 | Msa0810270:CDS | 50.0% | |
| ! | AGCTCCTTTGGAAGCTGCTT+CGG | + | chr5_3:38516920-38516939 | Msa0810270:CDS | 50.0% |
| GGAGCTTATCCTGGTTATGC+TGG | + | chr5_3:38516966-38516985 | Msa0810270:CDS | 50.0% | |
| AAAAGGTCCCCAGCATAACC+AGG | - | chr5_3:38516978-38516997 | None:intergenic | 50.0% | |
| ! | GAGATTTTGCCACTGAGGAG+AGG | - | chr5_3:38516288-38516307 | None:intergenic | 50.0% |
| TGATTTCCACCACGTGGCAA+CGG | - | chr5_3:38516421-38516440 | None:intergenic | 50.0% | |
| ! | TTCGGTTGATTTCCACCACG+TGG | - | chr5_3:38516427-38516446 | None:intergenic | 50.0% |
| GAGTACCTAGTGAGAGAGCT+AGG | - | chr5_3:38516488-38516507 | None:intergenic | 50.0% | |
| TCAAGTAGGTGTGGAACCCA+TGG | + | chr5_3:38516645-38516664 | Msa0810270:CDS | 50.0% | |
| TGATGTGGGTCTTGACGGAA+TGG | + | chr5_3:38516821-38516840 | Msa0810270:CDS | 50.0% | |
| ! | AGCTCCTTTGGAAGCTGCTT+CGG | + | chr5_3:38516920-38516939 | Msa0810270:CDS | 50.0% |
| GGAGCTTATCCTGGTTATGC+TGG | + | chr5_3:38516966-38516985 | Msa0810270:CDS | 50.0% | |
| AAAAGGTCCCCAGCATAACC+AGG | - | chr5_3:38516978-38516997 | None:intergenic | 50.0% | |
| CACTGAGGAGAGGACCTTTG+TGG | - | chr5_3:38516278-38516297 | None:intergenic | 55.0% | |
| CACAAAGGTCCTCTCCTCAG+TGG | + | chr5_3:38516276-38516295 | Msa0810270:CDS | 55.0% | |
| GGCAACGGATGGTTGTGATG+TGG | - | chr5_3:38516406-38516425 | None:intergenic | 55.0% | |
| ! | AATGTGCTGGTCAATGCGCG+TGG | + | chr5_3:38516742-38516761 | Msa0810270:CDS | 55.0% |
| ! | TGGTCCACAAAGTGCCCCAT+TGG | + | chr5_3:38516785-38516804 | Msa0810270:CDS | 55.0% |
| ! | GCAACCAATGGGGCACTTTG+TGG | - | chr5_3:38516792-38516811 | None:intergenic | 55.0% |
| CAAGCCGAAGCAGCTTCCAA+AGG | - | chr5_3:38516927-38516946 | None:intergenic | 55.0% | |
| ! | GAAGCTGCTTCGGCTTGTAC+TGG | + | chr5_3:38516930-38516949 | Msa0810270:CDS | 55.0% |
| CACTGAGGAGAGGACCTTTG+TGG | - | chr5_3:38516278-38516297 | None:intergenic | 55.0% | |
| CACAAAGGTCCTCTCCTCAG+TGG | + | chr5_3:38516276-38516295 | Msa0810270:CDS | 55.0% | |
| GGCAACGGATGGTTGTGATG+TGG | - | chr5_3:38516406-38516425 | None:intergenic | 55.0% | |
| ! | AATGTGCTGGTCAATGCGCG+TGG | + | chr5_3:38516742-38516761 | Msa0810270:CDS | 55.0% |
| ! | TGGTCCACAAAGTGCCCCAT+TGG | + | chr5_3:38516785-38516804 | Msa0810270:CDS | 55.0% |
| ! | GCAACCAATGGGGCACTTTG+TGG | - | chr5_3:38516792-38516811 | None:intergenic | 55.0% |
| CAAGCCGAAGCAGCTTCCAA+AGG | - | chr5_3:38516927-38516946 | None:intergenic | 55.0% | |
| ! | GAAGCTGCTTCGGCTTGTAC+TGG | + | chr5_3:38516930-38516949 | Msa0810270:CDS | 55.0% |
| CACAACCATCCGTTGCCACG+TGG | + | chr5_3:38516409-38516428 | Msa0810270:CDS | 60.0% | |
| AACCATCCGTTGCCACGTGG+TGG | + | chr5_3:38516412-38516431 | Msa0810270:CDS | 60.0% | |
| TTCCACCACGTGGCAACGGA+TGG | - | chr5_3:38516417-38516436 | None:intergenic | 60.0% | |
| CACAACCATCCGTTGCCACG+TGG | + | chr5_3:38516409-38516428 | Msa0810270:CDS | 60.0% | |
| AACCATCCGTTGCCACGTGG+TGG | + | chr5_3:38516412-38516431 | Msa0810270:CDS | 60.0% | |
| TTCCACCACGTGGCAACGGA+TGG | - | chr5_3:38516417-38516436 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 38516162 | 38517100 | 38516162 | ID=Msa0810270;Name=Msa0810270 |
| chr5_3 | mRNA | 38516162 | 38517100 | 38516162 | ID=Msa0810270-mRNA-1;Parent=Msa0810270;Name=Msa0810270-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|-1|0|1|-1|1|1|0|312 |
| chr5_3 | exon | 38516162 | 38517100 | 38516162 | ID=Msa0810270-mRNA-1:exon:11729;Parent=Msa0810270-mRNA-1 |
| chr5_3 | CDS | 38516162 | 38517100 | 38516162 | ID=Msa0810270-mRNA-1:cds;Parent=Msa0810270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
