Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1177560 | sp|Q6DST1|Y1465_ARATH | 26.442 | 208 | 146 | 4 | 10 | 213 | 9 | 213 | 4.68e-17 | 79.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1177560 | A0A072TPL5 | 91.781 | 219 | 18 | 0 | 1 | 219 | 1 | 219 | 6.48e-134 | 384 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018070 | Msa1177560 | 0.808380 | 3.186372e-50 | -8.615850e-47 |
| Msa0032080 | Msa1177560 | 0.827934 | 1.188793e-54 | -8.615850e-47 |
| Msa0032100 | Msa1177560 | 0.803964 | 2.710516e-49 | -8.615850e-47 |
| Msa0078640 | Msa1177560 | 0.819615 | 1.058056e-52 | -8.615850e-47 |
| Msa0092410 | Msa1177560 | 0.801257 | 9.807536e-49 | -8.615850e-47 |
| Msa0099210 | Msa1177560 | 0.811689 | 6.174472e-51 | -8.615850e-47 |
| Msa0106710 | Msa1177560 | 0.802653 | 5.065046e-49 | -8.615850e-47 |
| Msa0602980 | Msa1177560 | 0.809877 | 1.522503e-50 | -8.615850e-47 |
| Msa0603370 | Msa1177560 | 0.815207 | 1.040632e-51 | -8.615850e-47 |
| Msa0605370 | Msa1177560 | 0.815884 | 7.355026e-52 | -8.615850e-47 |
| Msa0613110 | Msa1177560 | 0.809619 | 1.730165e-50 | -8.615850e-47 |
| Msa0613340 | Msa1177560 | 0.829516 | 4.928808e-55 | -8.615850e-47 |
| Msa0615010 | Msa1177560 | 0.813452 | 2.541083e-51 | -8.615850e-47 |
| Msa0622170 | Msa1177560 | -0.811945 | 5.430125e-51 | -8.615850e-47 |
| Msa0624960 | Msa1177560 | 0.817892 | 2.604692e-52 | -8.615850e-47 |
| Msa0638360 | Msa1177560 | 0.806351 | 8.579199e-50 | -8.615850e-47 |
| Msa0644400 | Msa1177560 | 0.812522 | 4.063255e-51 | -8.615850e-47 |
| Msa0645300 | Msa1177560 | 0.813635 | 2.316779e-51 | -8.615850e-47 |
| Msa0667740 | Msa1177560 | 0.815984 | 6.985917e-52 | -8.615850e-47 |
| Msa0673120 | Msa1177560 | 0.821949 | 3.076313e-53 | -8.615850e-47 |
| Msa0686000 | Msa1177560 | 0.805904 | 1.065420e-49 | -8.615850e-47 |
| Msa0689780 | Msa1177560 | 0.815298 | 9.933269e-52 | -8.615850e-47 |
| Msa0696540 | Msa1177560 | 0.805028 | 1.626309e-49 | -8.615850e-47 |
| Msa0696850 | Msa1177560 | 0.810528 | 1.102182e-50 | -8.615850e-47 |
| Msa0703780 | Msa1177560 | 0.801488 | 8.792656e-49 | -8.615850e-47 |
| Msa0708310 | Msa1177560 | 0.819181 | 1.329013e-52 | -8.615850e-47 |
| Msa0711150 | Msa1177560 | 0.809206 | 2.121372e-50 | -8.615850e-47 |
| Msa0743870 | Msa1177560 | 0.827087 | 1.898793e-54 | -8.615850e-47 |
| Msa0756380 | Msa1177560 | 0.802947 | 4.405639e-49 | -8.615850e-47 |
| Msa0784480 | Msa1177560 | 0.802904 | 4.495063e-49 | -8.615850e-47 |
| Msa0797250 | Msa1177560 | 0.804327 | 2.278642e-49 | -8.615850e-47 |
| Msa0798010 | Msa1177560 | 0.806279 | 8.885542e-50 | -8.615850e-47 |
| Msa0810270 | Msa1177560 | 0.847674 | 9.956764e-60 | -8.615850e-47 |
| Msa0831130 | Msa1177560 | 0.809789 | 1.590455e-50 | -8.615850e-47 |
| Msa0831850 | Msa1177560 | 0.808697 | 2.726889e-50 | -8.615850e-47 |
| Msa0837870 | Msa1177560 | 0.809012 | 2.334571e-50 | -8.615850e-47 |
| Msa0124320 | Msa1177560 | 0.807918 | 3.996877e-50 | -8.615850e-47 |
| Msa0130720 | Msa1177560 | 0.817289 | 3.562906e-52 | -8.615850e-47 |
| Msa0131770 | Msa1177560 | 0.807635 | 4.589653e-50 | -8.615850e-47 |
| Msa0136630 | Msa1177560 | 0.803998 | 2.667843e-49 | -8.615850e-47 |
| Msa0138020 | Msa1177560 | 0.800835 | 1.195951e-48 | -8.615850e-47 |
| Msa0150230 | Msa1177560 | 0.814086 | 1.842397e-51 | -8.615850e-47 |
| Msa0160960 | Msa1177560 | 0.830706 | 2.525242e-55 | -8.615850e-47 |
| Msa0172080 | Msa1177560 | 0.839358 | 1.662308e-57 | -8.615850e-47 |
| Msa0178510 | Msa1177560 | 0.805018 | 1.634508e-49 | -8.615850e-47 |
| Msa0186950 | Msa1177560 | 0.808252 | 3.393175e-50 | -8.615850e-47 |
| Msa0187830 | Msa1177560 | 0.837720 | 4.399898e-57 | -8.615850e-47 |
| Msa0190530 | Msa1177560 | 0.825286 | 5.091041e-54 | -8.615850e-47 |
| Msa0195100 | Msa1177560 | 0.839150 | 1.882461e-57 | -8.615850e-47 |
| Msa0201570 | Msa1177560 | 0.812145 | 4.913061e-51 | -8.615850e-47 |
| Msa0202800 | Msa1177560 | 0.837861 | 4.047621e-57 | -8.615850e-47 |
| Msa0204840 | Msa1177560 | 0.814453 | 1.528608e-51 | -8.615850e-47 |
| Msa0218050 | Msa1177560 | 0.805465 | 1.317523e-49 | -8.615850e-47 |
| Msa0220730 | Msa1177560 | 0.814536 | 1.465600e-51 | -8.615850e-47 |
| Msa0230320 | Msa1177560 | 0.827282 | 1.704915e-54 | -8.615850e-47 |
| Msa0233080 | Msa1177560 | 0.803374 | 3.594901e-49 | -8.615850e-47 |
| Msa0371950 | Msa1177560 | 0.815688 | 8.131944e-52 | -8.615850e-47 |
| Msa0382370 | Msa1177560 | 0.808487 | 3.023588e-50 | -8.615850e-47 |
| Msa0382490 | Msa1177560 | 0.802523 | 5.387376e-49 | -8.615850e-47 |
| Msa0386010 | Msa1177560 | 0.809836 | 1.554108e-50 | -8.615850e-47 |
| Msa0389270 | Msa1177560 | 0.804191 | 2.432138e-49 | -8.615850e-47 |
| Msa0389770 | Msa1177560 | 0.828627 | 8.091580e-55 | -8.615850e-47 |
| Msa0390530 | Msa1177560 | 0.819723 | 1.000070e-52 | -8.615850e-47 |
| Msa0393430 | Msa1177560 | 0.832291 | 1.028010e-55 | -8.615850e-47 |
| Msa0393620 | Msa1177560 | 0.800255 | 1.570028e-48 | -8.615850e-47 |
| Msa0394120 | Msa1177560 | 0.804231 | 2.386147e-49 | -8.615850e-47 |
| Msa0394470 | Msa1177560 | 0.835579 | 1.545919e-56 | -8.615850e-47 |
| Msa0398200 | Msa1177560 | 0.829927 | 3.914493e-55 | -8.615850e-47 |
| Msa0417330 | Msa1177560 | 0.806309 | 8.755876e-50 | -8.615850e-47 |
| Msa0432160 | Msa1177560 | 0.828627 | 8.095072e-55 | -8.615850e-47 |
| Msa0432670 | Msa1177560 | 0.830891 | 2.275055e-55 | -8.615850e-47 |
| Msa0458740 | Msa1177560 | 0.819514 | 1.116237e-52 | -8.615850e-47 |
| Msa0461790 | Msa1177560 | 0.801857 | 7.386217e-49 | -8.615850e-47 |
| Msa0476680 | Msa1177560 | 0.831252 | 1.854298e-55 | -8.615850e-47 |
| Msa0994910 | Msa1177560 | 0.817485 | 3.217605e-52 | -8.615850e-47 |
| Msa0999680 | Msa1177560 | 0.834047 | 3.755870e-56 | -8.615850e-47 |
| Msa1006010 | Msa1177560 | -0.827516 | 1.498101e-54 | -8.615850e-47 |
| Msa1029620 | Msa1177560 | 0.826609 | 2.469584e-54 | -8.615850e-47 |
| Msa1032800 | Msa1177560 | 0.803397 | 3.555133e-49 | -8.615850e-47 |
| Msa1039710 | Msa1177560 | -0.811084 | 8.356133e-51 | -8.615850e-47 |
| Msa1040980 | Msa1177560 | 0.806680 | 7.313482e-50 | -8.615850e-47 |
| Msa1043760 | Msa1177560 | 0.803768 | 2.978044e-49 | -8.615850e-47 |
| Msa1063080 | Msa1177560 | 0.817167 | 3.795664e-52 | -8.615850e-47 |
| Msa1063420 | Msa1177560 | 0.836943 | 6.955934e-57 | -8.615850e-47 |
| Msa1068480 | Msa1177560 | 0.810006 | 1.428741e-50 | -8.615850e-47 |
| Msa1076960 | Msa1177560 | 0.838132 | 3.447250e-57 | -8.615850e-47 |
| Msa1098250 | Msa1177560 | 0.827026 | 1.963492e-54 | -8.615850e-47 |
| Msa1098270 | Msa1177560 | 0.818840 | 1.589120e-52 | -8.615850e-47 |
| Msa0240270 | Msa1177560 | 0.816864 | 4.438762e-52 | -8.615850e-47 |
| Msa0244140 | Msa1177560 | 0.819555 | 1.092362e-52 | -8.615850e-47 |
| Msa0244190 | Msa1177560 | 0.812394 | 4.334461e-51 | -8.615850e-47 |
| Msa0244230 | Msa1177560 | 0.810947 | 8.944796e-51 | -8.615850e-47 |
| Msa0251640 | Msa1177560 | 0.804019 | 2.641134e-49 | -8.615850e-47 |
| Msa0267790 | Msa1177560 | 0.805810 | 1.115259e-49 | -8.615850e-47 |
| Msa0269560 | Msa1177560 | 0.807610 | 4.646650e-50 | -8.615850e-47 |
| Msa0290870 | Msa1177560 | 0.817147 | 3.834862e-52 | -8.615850e-47 |
| Msa0291280 | Msa1177560 | 0.816325 | 5.860147e-52 | -8.615850e-47 |
| Msa0307540 | Msa1177560 | 0.804317 | 2.289432e-49 | -8.615850e-47 |
| Msa0308460 | Msa1177560 | 0.800172 | 1.632527e-48 | -8.615850e-47 |
| Msa0308630 | Msa1177560 | 0.832860 | 7.428701e-56 | -8.615850e-47 |
| Msa0314000 | Msa1177560 | 0.831803 | 1.357233e-55 | -8.615850e-47 |
| Msa0322680 | Msa1177560 | 0.806451 | 8.175975e-50 | -8.615850e-47 |
| Msa0347750 | Msa1177560 | 0.824851 | 6.452694e-54 | -8.615850e-47 |
| Msa0357220 | Msa1177560 | 0.817049 | 4.033311e-52 | -8.615850e-47 |
| Msa1121480 | Msa1177560 | 0.806736 | 7.117411e-50 | -8.615850e-47 |
| Msa1121490 | Msa1177560 | 0.814396 | 1.573945e-51 | -8.615850e-47 |
| Msa1122860 | Msa1177560 | 0.835154 | 1.979556e-56 | -8.615850e-47 |
| Msa1127380 | Msa1177560 | 0.816304 | 5.924255e-52 | -8.615850e-47 |
| Msa1143020 | Msa1177560 | 0.800275 | 1.555403e-48 | -8.615850e-47 |
| Msa1177560 | Msa1177780 | 0.817446 | 3.283489e-52 | -8.615850e-47 |
| Msa1177560 | Msa1185110 | 0.819151 | 1.350048e-52 | -8.615850e-47 |
| Msa1177560 | Msa1198770 | 0.805886 | 1.075044e-49 | -8.615850e-47 |
| Msa1177560 | Msa1212050 | 0.828253 | 9.964955e-55 | -8.615850e-47 |
| Msa1177560 | Msa1212130 | 0.821400 | 4.119103e-53 | -8.615850e-47 |
| Msa1177560 | Msa1221330 | 0.820183 | 7.846709e-53 | -8.615850e-47 |
| Msa1177560 | Msa1225100 | 0.808202 | 3.476930e-50 | -8.615850e-47 |
| Msa1177560 | Msa1236440 | 0.805990 | 1.022277e-49 | -8.615850e-47 |
| Msa1177560 | Msa1237020 | 0.802500 | 5.447773e-49 | -8.615850e-47 |
| Msa1177560 | Msa1246360 | 0.818403 | 1.995749e-52 | -8.615850e-47 |
| Msa1177560 | Msa1252260 | 0.801570 | 8.461203e-49 | -8.615850e-47 |
| Msa1177560 | Msa1259860 | 0.815733 | 7.945936e-52 | -8.615850e-47 |
| Msa1177560 | Msa1270660 | 0.820230 | 7.655883e-53 | -8.615850e-47 |
| Msa1177560 | Msa1270730 | 0.806947 | 6.420892e-50 | -8.615850e-47 |
| Msa1177560 | Msa1272680 | 0.813363 | 2.658582e-51 | -8.615850e-47 |
| Msa1177560 | Msa1280150 | 0.828118 | 1.073504e-54 | -8.615850e-47 |
| Msa1177560 | Msa1291830 | 0.825393 | 4.803671e-54 | -8.615850e-47 |
| Msa1177560 | Msa1292990 | 0.808914 | 2.450493e-50 | -8.615850e-47 |
| Msa1177560 | Msa1304890 | -0.801954 | 7.055047e-49 | -8.615850e-47 |
| Msa1177560 | Msa1329870 | 0.805758 | 1.143857e-49 | -8.615850e-47 |
| Msa1177560 | Msa1335230 | 0.813297 | 2.748612e-51 | -8.615850e-47 |
| Msa1177560 | Msa1337310 | 0.811572 | 6.545391e-51 | -8.615850e-47 |
| Msa1177560 | Msa1338400 | 0.826988 | 2.005526e-54 | -8.615850e-47 |
| Msa1177560 | Msa1343250 | 0.829060 | 6.358405e-55 | -8.615850e-47 |
| Msa1177560 | Msa1349450 | 0.813564 | 2.401849e-51 | -8.615850e-47 |
| Msa1177560 | Msa1351740 | 0.806428 | 8.266927e-50 | -8.615850e-47 |
| Msa1177560 | Msa1353890 | 0.800147 | 1.652114e-48 | -8.615850e-47 |
| Msa1177560 | Msa1372150 | 0.801623 | 8.249783e-49 | -8.615850e-47 |
| Msa1177560 | Msa1378040 | 0.816471 | 5.436475e-52 | -8.615850e-47 |
| Msa1177560 | Msa1378940 | 0.808109 | 3.639382e-50 | -8.615850e-47 |
| Msa1177560 | Msa1384280 | 0.834704 | 2.570119e-56 | -8.615850e-47 |
| Msa1177560 | Msa1386890 | 0.826284 | 2.951596e-54 | -8.615850e-47 |
| Msa1177560 | Msa1392210 | 0.800611 | 1.328989e-48 | -8.615850e-47 |
| Msa1177560 | Msa1394310 | 0.829812 | 4.175016e-55 | -8.615850e-47 |
| Msa1177560 | Msa1400930 | 0.822721 | 2.035368e-53 | -8.615850e-47 |
| Msa1177560 | Msa1408340 | 0.807783 | 4.270031e-50 | -8.615850e-47 |
| Msa1177560 | Msa1420270 | 0.823906 | 1.076445e-53 | -8.615850e-47 |
| Msa1177560 | Msa1423780 | 0.817624 | 2.993915e-52 | -8.615850e-47 |
| Msa1177560 | Msa1424630 | 0.822249 | 2.620748e-53 | -8.615850e-47 |
| Msa1177560 | Msa1431750 | 0.822841 | 1.908543e-53 | -8.615850e-47 |
| Msa1177560 | Msa1437730 | 0.822003 | 2.987985e-53 | -8.615850e-47 |
| Msa1177560 | Msa1444120 | 0.802372 | 5.787658e-49 | -8.615850e-47 |
| Msa1177560 | Msa1456230 | 0.826500 | 2.621947e-54 | -8.615850e-47 |
| Msa1177560 | Msa1457160 | 0.809085 | 2.252774e-50 | -8.615850e-47 |
| Msa1177560 | Msa1458340 | 0.832392 | 9.704289e-56 | -8.615850e-47 |
| Msa1177560 | Msa1462360 | 0.810824 | 9.511085e-51 | -8.615850e-47 |
| Msa0485490 | Msa1177560 | 0.800486 | 1.409059e-48 | -8.615850e-47 |
| Msa0514320 | Msa1177560 | 0.809521 | 1.815728e-50 | -8.615850e-47 |
| Msa0521010 | Msa1177560 | 0.833227 | 6.020300e-56 | -8.615850e-47 |
| Msa0526070 | Msa1177560 | -0.811557 | 6.596660e-51 | -8.615850e-47 |
| Msa0549890 | Msa1177560 | 0.816843 | 4.487030e-52 | -8.615850e-47 |
| Msa0574600 | Msa1177560 | 0.801262 | 9.782994e-49 | -8.615850e-47 |
| Msa0581400 | Msa1177560 | 0.811487 | 6.830273e-51 | -8.615850e-47 |
| Msa0592290 | Msa1177560 | 0.802288 | 6.023006e-49 | -8.615850e-47 |
| Msa0844490 | Msa1177560 | 0.802176 | 6.351614e-49 | -8.615850e-47 |
| Msa0853520 | Msa1177560 | 0.801445 | 8.976273e-49 | -8.615850e-47 |
| Msa0892570 | Msa1177560 | 0.803885 | 2.816262e-49 | -8.615850e-47 |
| Msa0894710 | Msa1177560 | 0.820410 | 6.961184e-53 | -8.615850e-47 |
| Msa0899430 | Msa1177560 | 0.815403 | 9.411693e-52 | -8.615850e-47 |
| Msa0899450 | Msa1177560 | 0.825410 | 4.758544e-54 | -8.615850e-47 |
| Msa0899970 | Msa1177560 | 0.824815 | 6.578485e-54 | -8.615850e-47 |
| Msa0902830 | Msa1177560 | 0.820192 | 7.810453e-53 | -8.615850e-47 |
| Msa0914270 | Msa1177560 | 0.835215 | 1.910195e-56 | -8.615850e-47 |
| Msa0921420 | Msa1177560 | 0.835814 | 1.347580e-56 | -8.615850e-47 |
| Msa0927380 | Msa1177560 | 0.828277 | 9.828907e-55 | -8.615850e-47 |
| Msa0936390 | Msa1177560 | 0.818242 | 2.170682e-52 | -8.615850e-47 |
| Msa0939110 | Msa1177560 | 0.815024 | 1.142515e-51 | -8.615850e-47 |
| Msa0948320 | Msa1177560 | 0.802103 | 6.576084e-49 | -8.615850e-47 |
| Msa0960390 | Msa1177560 | 0.849717 | 2.702422e-60 | -8.615850e-47 |
| Msa0964900 | Msa1177560 | 0.836211 | 1.068697e-56 | -8.615850e-47 |
| Msa0965080 | Msa1177560 | 0.832915 | 7.195595e-56 | -8.615850e-47 |
| Msa0965290 | Msa1177560 | 0.835437 | 1.678631e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1177560 | MtrunA17_Chr8g0348161 | 91.781 | 219 | 18 | 0 | 1 | 219 | 1 | 219 | 1.25e-137 | 384 |
| Msa1177560 | MtrunA17_Chr8g0334401 | 38.378 | 185 | 111 | 3 | 36 | 219 | 10 | 192 | 1.19e-34 | 122 |
| Msa1177560 | MtrunA17_Chr8g0387601 | 37.104 | 221 | 120 | 6 | 1 | 208 | 1 | 215 | 5.23e-32 | 116 |
| Msa1177560 | MtrunA17_Chr7g0245381 | 35.152 | 165 | 104 | 3 | 57 | 219 | 48 | 211 | 4.50e-26 | 100 |
| Msa1177560 | MtrunA17_Chr2g0322771 | 27.749 | 191 | 126 | 4 | 32 | 219 | 3 | 184 | 1.29e-18 | 80.1 |
| Msa1177560 | MtrunA17_Chr4g0024221 | 30.928 | 194 | 116 | 6 | 32 | 219 | 3 | 184 | 2.46e-15 | 71.2 |
| Msa1177560 | MtrunA17_Chr5g0394271 | 30.208 | 192 | 119 | 5 | 33 | 219 | 9 | 190 | 1.94e-14 | 68.9 |
| Msa1177560 | MtrunA17_Chr2g0322791 | 26.562 | 192 | 128 | 5 | 32 | 219 | 3 | 185 | 4.13e-13 | 65.5 |
| Msa1177560 | MtrunA17_Chr8g0388291 | 24.706 | 170 | 107 | 3 | 58 | 213 | 46 | 208 | 1.36e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1177560 | AT2G46150.1 | 40.708 | 226 | 122 | 6 | 1 | 219 | 1 | 221 | 2.72e-51 | 166 |
| Msa1177560 | AT3G54200.1 | 37.113 | 194 | 120 | 2 | 27 | 219 | 43 | 235 | 2.93e-21 | 88.6 |
| Msa1177560 | AT1G64065.1 | 26.442 | 208 | 146 | 4 | 10 | 213 | 9 | 213 | 4.76e-18 | 79.7 |
| Msa1177560 | AT3G05975.1 | 28.866 | 194 | 130 | 6 | 29 | 219 | 1 | 189 | 1.03e-17 | 78.2 |
| Msa1177560 | AT4G23610.1 | 31.401 | 207 | 126 | 9 | 5 | 199 | 11 | 213 | 1.05e-16 | 76.3 |
Find 41 sgRNAs with CRISPR-Local
Find 55 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCATTTGTTGTTACTTT+TGG | 0.140351 | 8_1:+9939675 | None:intergenic |
| CTTCTTGGCTGGACTCTAAC+TGG | 0.216242 | 8_1:+9939837 | None:intergenic |
| TGTACTGTTTCCAAGCTTAA+TGG | 0.225190 | 8_1:+9939545 | None:intergenic |
| TATTTCAGAGAGAGGAATTC+AGG | 0.275802 | 8_1:-9939265 | Msa1177560:CDS |
| CGCTTCTAGTCCGGATTTGT+TGG | 0.282259 | 8_1:-9939406 | Msa1177560:CDS |
| GAATACTTACTCCGTAATTC+CGG | 0.295528 | 8_1:-9939355 | Msa1177560:CDS |
| GAATGTTACGATTGATGTTA+TGG | 0.346203 | 8_1:-9939439 | Msa1177560:CDS |
| CTTCATCATCACTTCTTGGC+TGG | 0.358214 | 8_1:+9939826 | None:intergenic |
| GCTTCTAGTCCGGATTTGTT+GGG | 0.369515 | 8_1:-9939405 | Msa1177560:CDS |
| GTCATGTTGATCTTAACTTT+AGG | 0.369852 | 8_1:+9939609 | None:intergenic |
| CTTCACTCTCCCCGGAATTA+CGG | 0.377348 | 8_1:+9939344 | None:intergenic |
| AATACTTACTCCGTAATTCC+GGG | 0.411927 | 8_1:-9939354 | Msa1177560:CDS |
| TTCTTGGCTGGACTCTAACT+GGG | 0.425971 | 8_1:+9939838 | None:intergenic |
| TTGATCTTAACTTTAGGTGT+TGG | 0.437521 | 8_1:+9939615 | None:intergenic |
| GGCTAGAGGTCTTGCTTGAT+CGG | 0.453925 | 8_1:+9939860 | None:intergenic |
| TTCTTCGCCTTCACAAGTCC+CGG | 0.466933 | 8_1:+9939474 | None:intergenic |
| AACAAAATCTTCACTCTCCC+CGG | 0.470476 | 8_1:+9939336 | None:intergenic |
| AATTGTTATCTTAGCATTCA+CGG | 0.478347 | 8_1:-9939715 | Msa1177560:CDS |
| CGCGGACGCGGTAACACCAC+CGG | 0.479631 | 8_1:-9939493 | Msa1177560:CDS |
| CTTCTAGTCCGGATTTGTTG+GGG | 0.484689 | 8_1:-9939404 | Msa1177560:CDS |
| AATATAGCATCCATTAAGCT+TGG | 0.490745 | 8_1:-9939555 | Msa1177560:CDS |
| GGACATGATATGCACACATA+AGG | 0.522877 | 8_1:-9939244 | Msa1177560:CDS |
| TGACGTCAAAGTTTGTGAGT+TGG | 0.525334 | 8_1:+9939652 | None:intergenic |
| ACGATTAATATTTCAGAGAG+AGG | 0.544282 | 8_1:-9939273 | Msa1177560:CDS |
| TGGACTCTAACTGGGGCTAG+AGG | 0.553580 | 8_1:+9939846 | None:intergenic |
| AACACCACCGGGACTTGTGA+AGG | 0.575996 | 8_1:-9939481 | Msa1177560:CDS |
| TGGTATAACTGTCGCGGACG+CGG | 0.579920 | 8_1:-9939505 | Msa1177560:CDS |
| TCTTGGCTGGACTCTAACTG+GGG | 0.600978 | 8_1:+9939839 | None:intergenic |
| TTCTAGTCCGGATTTGTTGG+GGG | 0.601841 | 8_1:-9939403 | Msa1177560:CDS |
| GCGGACGCGGTAACACCACC+GGG | 0.615153 | 8_1:-9939492 | Msa1177560:CDS |
| AATAGACATGTTCACTACCA+TGG | 0.631088 | 8_1:+9939587 | None:intergenic |
| TTCGCCTTCACAAGTCCCGG+TGG | 0.640171 | 8_1:+9939477 | None:intergenic |
| CTACCGTGGTATAACTGTCG+CGG | 0.657894 | 8_1:-9939511 | Msa1177560:CDS |
| ACAAATCCGGACTAGAAGCG+AGG | 0.679933 | 8_1:+9939409 | None:intergenic |
| AGTTAAGATCAACATGACCA+TGG | 0.680037 | 8_1:-9939604 | Msa1177560:CDS |
| TGAAGGCGAAGAAGACAACA+AGG | 0.693934 | 8_1:-9939464 | Msa1177560:CDS |
| ATACTTACTCCGTAATTCCG+GGG | 0.704579 | 8_1:-9939353 | Msa1177560:CDS |
| ACAACAACGGTGTACTACCG+TGG | 0.719084 | 8_1:-9939525 | Msa1177560:CDS |
| GCTTGGAAACAGTACAACAA+CGG | 0.719713 | 8_1:-9939538 | Msa1177560:CDS |
| TGTTACGATTGATGTTATGG+CGG | 0.723229 | 8_1:-9939436 | Msa1177560:CDS |
| AATCCGGACTAGAAGCGAGG+CGG | 0.753091 | 8_1:+9939412 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAACTTGATTTTTCTTCTA+CGG | + | chr8_1:9939325-9939344 | None:intergenic | 20.0% |
| ! | AGAAGAAAAATCAAGTTATG+TGG | - | chr8_1:9939326-9939345 | Msa1177560:CDS | 25.0% |
| !! | TGCAATTTTACTACTACTTT+TGG | - | chr8_1:9939358-9939377 | Msa1177560:CDS | 25.0% |
| ! | AATTGTTATCTTAGCATTCA+CGG | - | chr8_1:9939388-9939407 | Msa1177560:CDS | 25.0% |
| !!! | ATCTCATTTGTTGTTACTTT+TGG | + | chr8_1:9939431-9939450 | None:intergenic | 25.0% |
| ! | TTTTCTTCATCATCACTTCT+TGG | + | chr8_1:9939284-9939303 | None:intergenic | 30.0% |
| TTGATCTTAACTTTAGGTGT+TGG | + | chr8_1:9939491-9939510 | None:intergenic | 30.0% | |
| GTCATGTTGATCTTAACTTT+AGG | + | chr8_1:9939497-9939516 | None:intergenic | 30.0% | |
| AATATAGCATCCATTAAGCT+TGG | - | chr8_1:9939548-9939567 | Msa1177560:CDS | 30.0% | |
| GAATGTTACGATTGATGTTA+TGG | - | chr8_1:9939664-9939683 | Msa1177560:CDS | 30.0% | |
| ACGATTAATATTTCAGAGAG+AGG | - | chr8_1:9939830-9939849 | Msa1177560:CDS | 30.0% | |
| ! | GATTTTTCTTCTACGGTTCA+TGG | + | chr8_1:9939318-9939337 | None:intergenic | 35.0% |
| ! | CTTAGCATTCACGGTTTTTA+AGG | - | chr8_1:9939397-9939416 | Msa1177560:CDS | 35.0% |
| AGTTAAGATCAACATGACCA+TGG | - | chr8_1:9939499-9939518 | Msa1177560:CDS | 35.0% | |
| AATAGACATGTTCACTACCA+TGG | + | chr8_1:9939519-9939538 | None:intergenic | 35.0% | |
| TGTACTGTTTCCAAGCTTAA+TGG | + | chr8_1:9939561-9939580 | None:intergenic | 35.0% | |
| TGTTACGATTGATGTTATGG+CGG | - | chr8_1:9939667-9939686 | Msa1177560:CDS | 35.0% | |
| GAATACTTACTCCGTAATTC+CGG | - | chr8_1:9939748-9939767 | Msa1177560:CDS | 35.0% | |
| AATACTTACTCCGTAATTCC+GGG | - | chr8_1:9939749-9939768 | Msa1177560:CDS | 35.0% | |
| TATTTCAGAGAGAGGAATTC+AGG | - | chr8_1:9939838-9939857 | Msa1177560:CDS | 35.0% | |
| TGACGTCAAAGTTTGTGAGT+TGG | + | chr8_1:9939454-9939473 | None:intergenic | 40.0% | |
| GCTTGGAAACAGTACAACAA+CGG | - | chr8_1:9939565-9939584 | Msa1177560:CDS | 40.0% | |
| ATACTTACTCCGTAATTCCG+GGG | - | chr8_1:9939750-9939769 | Msa1177560:CDS | 40.0% | |
| AACAAAATCTTCACTCTCCC+CGG | + | chr8_1:9939770-9939789 | None:intergenic | 40.0% | |
| GGACATGATATGCACACATA+AGG | - | chr8_1:9939859-9939878 | Msa1177560:CDS | 40.0% | |
| TTCTTGGCTGGACTCTAACT+GGG | + | chr8_1:9939268-9939287 | None:intergenic | 45.0% | |
| CTTCATCATCACTTCTTGGC+TGG | + | chr8_1:9939280-9939299 | None:intergenic | 45.0% | |
| TGAAGGCGAAGAAGACAACA+AGG | - | chr8_1:9939639-9939658 | Msa1177560:CDS | 45.0% | |
| ! | GCTTCTAGTCCGGATTTGTT+GGG | - | chr8_1:9939698-9939717 | Msa1177560:CDS | 45.0% |
| !! | CTTCTAGTCCGGATTTGTTG+GGG | - | chr8_1:9939699-9939718 | Msa1177560:CDS | 45.0% |
| !! | TTCTAGTCCGGATTTGTTGG+GGG | - | chr8_1:9939700-9939719 | Msa1177560:CDS | 45.0% |
| TTTGTTGGGGGATGTGCTTA+AGG | - | chr8_1:9939712-9939731 | Msa1177560:CDS | 45.0% | |
| TTGTTGGGGGATGTGCTTAA+GGG | - | chr8_1:9939713-9939732 | Msa1177560:CDS | 45.0% | |
| GGCTAGAGGTCTTGCTTGAT+CGG | + | chr8_1:9939246-9939265 | None:intergenic | 50.0% | |
| TCTTGGCTGGACTCTAACTG+GGG | + | chr8_1:9939267-9939286 | None:intergenic | 50.0% | |
| CTTCTTGGCTGGACTCTAAC+TGG | + | chr8_1:9939269-9939288 | None:intergenic | 50.0% | |
| ACAACAACGGTGTACTACCG+TGG | - | chr8_1:9939578-9939597 | Msa1177560:CDS | 50.0% | |
| CTACCGTGGTATAACTGTCG+CGG | - | chr8_1:9939592-9939611 | Msa1177560:CDS | 50.0% | |
| TTCTTCGCCTTCACAAGTCC+CGG | + | chr8_1:9939632-9939651 | None:intergenic | 50.0% | |
| ! | ACAAATCCGGACTAGAAGCG+AGG | + | chr8_1:9939697-9939716 | None:intergenic | 50.0% |
| CGCTTCTAGTCCGGATTTGT+TGG | - | chr8_1:9939697-9939716 | Msa1177560:CDS | 50.0% | |
| AGCACATCCCCCAACAAATC+CGG | + | chr8_1:9939710-9939729 | None:intergenic | 50.0% | |
| TGTTGGGGGATGTGCTTAAG+GGG | - | chr8_1:9939714-9939733 | Msa1177560:CDS | 50.0% | |
| CTTCACTCTCCCCGGAATTA+CGG | + | chr8_1:9939762-9939781 | None:intergenic | 50.0% | |
| TGGACTCTAACTGGGGCTAG+AGG | + | chr8_1:9939260-9939279 | None:intergenic | 55.0% | |
| CGTCCGCGACAGTTATACCA+CGG | + | chr8_1:9939598-9939617 | None:intergenic | 55.0% | |
| TGGTATAACTGTCGCGGACG+CGG | - | chr8_1:9939598-9939617 | Msa1177560:CDS | 55.0% | |
| AACACCACCGGGACTTGTGA+AGG | - | chr8_1:9939622-9939641 | Msa1177560:CDS | 55.0% | |
| ! | AATCCGGACTAGAAGCGAGG+CGG | + | chr8_1:9939694-9939713 | None:intergenic | 55.0% |
| GTTGGGGGATGTGCTTAAGG+GGG | - | chr8_1:9939715-9939734 | Msa1177560:CDS | 55.0% | |
| GGATGTGCTTAAGGGGGAGA+TGG | - | chr8_1:9939721-9939740 | Msa1177560:CDS | 55.0% | |
| TTCGCCTTCACAAGTCCCGG+TGG | + | chr8_1:9939629-9939648 | None:intergenic | 60.0% | |
| GGACCGCCTCGCTTCTAGTC+CGG | - | chr8_1:9939688-9939707 | Msa1177560:CDS | 65.0% | |
| CGCGGACGCGGTAACACCAC+CGG | - | chr8_1:9939610-9939629 | Msa1177560:CDS | 70.0% | |
| GCGGACGCGGTAACACCACC+GGG | - | chr8_1:9939611-9939630 | Msa1177560:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 9939233 | 9939892 | 9939233 | ID=Msa1177560;Name=Msa1177560 |
| chr8_1 | mRNA | 9939233 | 9939892 | 9939233 | ID=Msa1177560-mRNA-1;Parent=Msa1177560;Name=Msa1177560-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|219 |
| chr8_1 | exon | 9939233 | 9939892 | 9939233 | ID=Msa1177560-mRNA-1:exon:3418;Parent=Msa1177560-mRNA-1 |
| chr8_1 | CDS | 9939233 | 9939892 | 9939233 | ID=Msa1177560-mRNA-1:cds;Parent=Msa1177560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
