Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1066270 | XP_024627166.1 | 98.061 | 361 | 4 | 2 | 1 | 359 | 1 | 360 | 0.0 | 717 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1066270 | sp|Q29Q28|UTR2_ARATH | 78.711 | 357 | 63 | 1 | 3 | 359 | 2 | 345 | 0.0 | 559 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1066270 | A2Q3P6 | 98.061 | 361 | 4 | 2 | 1 | 359 | 1 | 360 | 0.0 | 717 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1027700 | Msa1066270 | 0.850987 | 1.189611e-60 | -8.615850e-47 |
| Msa1066270 | Msa1155230 | 0.917827 | 3.302653e-86 | -8.615850e-47 |
| Msa1066270 | Msa1224810 | 0.808309 | 3.298986e-50 | -8.615850e-47 |
| Msa0569220 | Msa1066270 | 0.800611 | 1.328609e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1066270 | MtrunA17_Chr7g0246821 | 98.061 | 361 | 4 | 2 | 1 | 359 | 1 | 360 | 0.0 | 717 |
| Msa1066270 | MtrunA17_Chr5g0416331 | 24.756 | 307 | 200 | 9 | 27 | 310 | 17 | 315 | 1.36e-17 | 82.8 |
| Msa1066270 | MtrunA17_Chr2g0327761 | 24.576 | 236 | 168 | 4 | 103 | 331 | 114 | 346 | 2.54e-14 | 73.2 |
| Msa1066270 | MtrunA17_Chr4g0030811 | 26.160 | 237 | 163 | 6 | 103 | 331 | 117 | 349 | 3.07e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1066270 | AT4G23010.1 | 78.711 | 357 | 63 | 1 | 3 | 359 | 2 | 345 | 0.0 | 559 |
| Msa1066270 | AT1G12600.1 | 79.050 | 358 | 63 | 3 | 2 | 359 | 4 | 349 | 0.0 | 556 |
| Msa1066270 | AT4G23010.2 | 75.134 | 374 | 63 | 2 | 3 | 359 | 2 | 362 | 0.0 | 550 |
| Msa1066270 | AT4G23010.3 | 69.554 | 404 | 63 | 2 | 3 | 359 | 2 | 392 | 0.0 | 537 |
| Msa1066270 | AT1G14360.1 | 24.620 | 329 | 211 | 10 | 27 | 332 | 17 | 331 | 7.01e-17 | 80.9 |
| Msa1066270 | AT2G02810.1 | 26.568 | 271 | 174 | 8 | 26 | 276 | 16 | 281 | 3.59e-16 | 79.0 |
| Msa1066270 | AT3G46180.1 | 24.756 | 307 | 189 | 10 | 66 | 347 | 57 | 346 | 3.43e-14 | 73.2 |
| Msa1066270 | AT5G59740.1 | 26.545 | 275 | 170 | 9 | 66 | 315 | 56 | 323 | 5.91e-13 | 69.7 |
Find 87 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCCATGTTGTTCTGTTAA+TGG | 0.102094 | 7_2:-60245063 | None:intergenic |
| TTCTTTGGATATCTTGTTAA+TGG | 0.171694 | 7_2:+60242122 | Msa1066270:CDS |
| CTGTTTCTGATTTACCTTAA+TGG | 0.191716 | 7_2:+60242768 | Msa1066270:CDS |
| GAAGCAATGGCTACATTTAT+AGG | 0.201415 | 7_2:+60244605 | Msa1066270:CDS |
| GTCTCTCTGAGAAGTATTTA+AGG | 0.206804 | 7_2:-60245160 | None:intergenic |
| TGTTCGTCTGGATTCTTCTT+TGG | 0.266789 | 7_2:+60242107 | Msa1066270:CDS |
| GCTTGCTTGTGAAACCATTA+AGG | 0.274635 | 7_2:-60242782 | None:intergenic |
| CAATTTCTCATTTGTTCGTC+TGG | 0.276606 | 7_2:+60242095 | Msa1066270:CDS |
| TGGCTTAACAAAGGGTTCTT+TGG | 0.276678 | 7_2:+60242863 | Msa1066270:CDS |
| GATAACCGGTGCTTTGGTTA+TGG | 0.297053 | 7_2:+60243719 | Msa1066270:CDS |
| CTGTAGTGGCAGCACCAAAA+AGG | 0.297504 | 7_2:-60244655 | None:intergenic |
| TAAATGAATTTATATCTAAA+AGG | 0.299555 | 7_2:-60245419 | None:intergenic |
| TTCAGGAATACGTGTATAAC+AGG | 0.321684 | 7_2:+60242583 | Msa1066270:intron |
| ACACCAACAACACTGAAATT+AGG | 0.324279 | 7_2:-60243690 | None:intergenic |
| TCTTCTCAGACCAGGAATAA+AGG | 0.336739 | 7_2:-60243583 | None:intergenic |
| ATAATGGGTGCCTTTATTCC+TGG | 0.337021 | 7_2:+60243573 | Msa1066270:CDS |
| TCGATCACCTGTGTGGTATC+AGG | 0.339457 | 7_2:-60243786 | None:intergenic |
| TTAGCTTAAAATGCTTCTAA+TGG | 0.341063 | 7_2:+60241919 | Msa1066270:five_prime_UTR |
| GAACAGGGTCGTAGTTTGTT+TGG | 0.348804 | 7_2:+60242041 | Msa1066270:CDS |
| GCTTGCTTAGACTAATAAAA+AGG | 0.351637 | 7_2:+60241837 | Msa1066270:five_prime_UTR |
| GAAGTATTTAAGGCTCTCTT+AGG | 0.362841 | 7_2:-60245150 | None:intergenic |
| AAAGATGAAGAAAGAAGAAC+AGG | 0.380383 | 7_2:+60242025 | Msa1066270:exon |
| AATGAGAAATTGTTGCCATC+TGG | 0.389074 | 7_2:-60242084 | None:intergenic |
| GTGCGTCTGCTAGTGTAAAT+AGG | 0.391821 | 7_2:-60243659 | None:intergenic |
| TCACCTAATTTCAGTGTTGT+TGG | 0.400864 | 7_2:+60243687 | Msa1066270:CDS |
| TCTGCAATACTCTTGGTAGT+TGG | 0.425608 | 7_2:+60243630 | Msa1066270:CDS |
| GTTGGTGTTGTTATGATAAC+CGG | 0.429713 | 7_2:+60243705 | Msa1066270:CDS |
| TTTCTTGTTTCAGCTATGGT+TGG | 0.441806 | 7_2:+60242715 | Msa1066270:intron |
| CATTAAGGTAAATCAGAAAC+AGG | 0.449175 | 7_2:-60242767 | None:intergenic |
| ATGAGAAATTGTTGCCATCT+GGG | 0.449700 | 7_2:-60242083 | None:intergenic |
| TTGCAGCATCCCTACGTGTA+TGG | 0.451909 | 7_2:+60244569 | Msa1066270:intron |
| TACTACTGTTGATGAAGAGT+TGG | 0.452829 | 7_2:+60245197 | Msa1066270:CDS |
| GGTTCTGCCAGTGATGATAA+TGG | 0.453653 | 7_2:+60243557 | Msa1066270:intron |
| TGGTACTTCACATTTATTCA+AGG | 0.453873 | 7_2:+60242735 | Msa1066270:CDS |
| TGAAAGGAGGCCCTTGGTCT+AGG | 0.454515 | 7_2:+60245254 | Msa1066270:CDS |
| GATTTAAACATAATCTGTGC+AGG | 0.457212 | 7_2:-60242900 | None:intergenic |
| GCAGATATATACTCATGTAT+TGG | 0.466873 | 7_2:-60243612 | None:intergenic |
| AAGGCTCTCTTAGGTATGGC+AGG | 0.469356 | 7_2:-60245141 | None:intergenic |
| TGTTATGATAACCGGTGCTT+TGG | 0.471959 | 7_2:+60243713 | Msa1066270:CDS |
| CTCTTCTGCTCTACAGTAGT+GGG | 0.478965 | 7_2:+60244390 | Msa1066270:CDS |
| TGGTTTCACAAGCAAGCAAA+TGG | 0.484985 | 7_2:+60242788 | Msa1066270:CDS |
| ACAGATAACAACAGCAAGAA+AGG | 0.486312 | 7_2:+60245002 | Msa1066270:intron |
| GTTGGTTTCAAATTGGTGAA+TGG | 0.498923 | 7_2:+60241996 | Msa1066270:five_prime_UTR |
| AGCATAGGTGGGATTAAGAA+AGG | 0.503212 | 7_2:-60244417 | None:intergenic |
| CAGGAGAATTATTCAAAGCA+TGG | 0.503301 | 7_2:+60244445 | Msa1066270:CDS |
| GAAGCTTTCTGCTGTACTCA+TGG | 0.507955 | 7_2:+60242833 | Msa1066270:CDS |
| ATTTAAGGCTCTCTTAGGTA+TGG | 0.516737 | 7_2:-60245145 | None:intergenic |
| TGGACTAATACTCATAGCTA+TGG | 0.524183 | 7_2:+60245086 | Msa1066270:CDS |
| ACTACTGTTGATGAAGAGTT+GGG | 0.528240 | 7_2:+60245198 | Msa1066270:CDS |
| GTATATATCTGCAATACTCT+TGG | 0.531600 | 7_2:+60243623 | Msa1066270:CDS |
| TGTATTAGTATTTGAAGCAA+TGG | 0.532065 | 7_2:+60244592 | Msa1066270:CDS |
| GGTACTTCACATTTATTCAA+GGG | 0.532918 | 7_2:+60242736 | Msa1066270:CDS |
| GTTCTGCCAGTGATGATAAT+GGG | 0.533555 | 7_2:+60243558 | Msa1066270:CDS |
| TTAGGGAGAGGACTGAAACT+TGG | 0.534675 | 7_2:-60244628 | None:intergenic |
| TAAATTTACCATGGCTGTAG+TGG | 0.534678 | 7_2:-60244669 | None:intergenic |
| TGGTGCTGCCACTACAGCCA+TGG | 0.543212 | 7_2:+60244661 | Msa1066270:CDS |
| AAGCTTTCTGCTGTACTCAT+GGG | 0.546977 | 7_2:+60242834 | Msa1066270:CDS |
| GGATCACATGGCTTAACAAA+GGG | 0.550447 | 7_2:+60242855 | Msa1066270:CDS |
| AGCATGGACTTCATGTTCAC+AGG | 0.552121 | 7_2:+60244461 | Msa1066270:CDS |
| AAGGCACCCATTATCATCAC+TGG | 0.553179 | 7_2:-60243564 | None:intergenic |
| TAGGTGAAGAAGATGATGAA+AGG | 0.558799 | 7_2:+60245238 | Msa1066270:CDS |
| GAAGAGTTGGGAACACTCCA+TGG | 0.566100 | 7_2:+60245210 | Msa1066270:CDS |
| GAGTTTGTGTGTACTTACAA+TGG | 0.568400 | 7_2:-60241754 | None:intergenic |
| AGATGATGAAAGGAGGCCCT+TGG | 0.573444 | 7_2:+60245248 | Msa1066270:CDS |
| GCAAGCAAATGGTGAACCCA+TGG | 0.573890 | 7_2:+60242799 | Msa1066270:CDS |
| GCTCTTCTGCTCTACAGTAG+TGG | 0.575505 | 7_2:+60244389 | Msa1066270:CDS |
| GCTGTACTCATGGGATCACA+TGG | 0.577442 | 7_2:+60242843 | Msa1066270:CDS |
| GGACTAATACTCATAGCTAT+GGG | 0.581423 | 7_2:+60245087 | Msa1066270:CDS |
| GGAACACTCCATGGTTCTGT+AGG | 0.587445 | 7_2:+60245219 | Msa1066270:CDS |
| AGAATCCATAACCAAAGCAC+CGG | 0.588172 | 7_2:-60243724 | None:intergenic |
| GGGATCACATGGCTTAACAA+AGG | 0.604916 | 7_2:+60242854 | Msa1066270:CDS |
| TATCATTCAACCTAGACCAA+GGG | 0.609666 | 7_2:-60245264 | None:intergenic |
| ACTAATACACCATACACGTA+GGG | 0.615564 | 7_2:-60244578 | None:intergenic |
| TTAACAGAACAACATGGGAG+TGG | 0.616464 | 7_2:+60245066 | Msa1066270:CDS |
| TTATCATTCAACCTAGACCA+AGG | 0.621202 | 7_2:-60245265 | None:intergenic |
| AACCATTAACAGAACAACAT+GGG | 0.639193 | 7_2:+60245061 | Msa1066270:CDS |
| ATTTAAACATAATCTGTGCA+GGG | 0.643855 | 7_2:-60242899 | None:intergenic |
| CACTCTCTGATAGACCCAGA+TGG | 0.644417 | 7_2:+60242069 | Msa1066270:CDS |
| CTTCTTCACCTACAGAACCA+TGG | 0.652962 | 7_2:-60245227 | None:intergenic |
| AAACCATTAACAGAACAACA+TGG | 0.655932 | 7_2:+60245060 | Msa1066270:CDS |
| GATTATGTTTAAATCCACAA+AGG | 0.671381 | 7_2:+60242908 | Msa1066270:CDS |
| GTGAAGAAGATGATGAAAGG+AGG | 0.673119 | 7_2:+60245241 | Msa1066270:CDS |
| TACTAATACACCATACACGT+AGG | 0.688815 | 7_2:-60244579 | None:intergenic |
| TATGAATCCTGATACCACAC+AGG | 0.699516 | 7_2:+60243779 | Msa1066270:CDS |
| TAGAAAATCGATCACCTGTG+TGG | 0.702061 | 7_2:-60243793 | None:intergenic |
| AAGATGAAGAAAGAAGAACA+GGG | 0.718452 | 7_2:+60242026 | Msa1066270:exon |
| TCTTGTTAATGGTATCTGTG+AGG | 0.723438 | 7_2:+60242133 | Msa1066270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATATGAAGTTTTTTTTA+TGG | + | chr7_2:60242413-60242432 | Msa1066270:intron | 10.0% |
| !! | AAAATTTGGATTTATTATAT+TGG | - | chr7_2:60243529-60243548 | None:intergenic | 10.0% |
| !! | AATTTAAAAAATCACAAATT+TGG | - | chr7_2:60243873-60243892 | None:intergenic | 10.0% |
| !! | TAAATGAATTTATATCTAAA+AGG | - | chr7_2:60245422-60245441 | None:intergenic | 10.0% |
| !!! | TTTTTACTGAATTGAATTTT+GGG | + | chr7_2:60241974-60241993 | Msa1066270:five_prime_UTR | 15.0% |
| !!! | AAATCCAAATTTTATGTTAT+AGG | + | chr7_2:60243536-60243555 | Msa1066270:intron | 15.0% |
| !! | TCAAATAAGTTAATCTAAAT+AGG | - | chr7_2:60243965-60243984 | None:intergenic | 15.0% |
| !!! | AAGTATAAGAATTTTAAATG+CGG | - | chr7_2:60244344-60244363 | None:intergenic | 15.0% |
| !!! | ATATATTAGTTTAGACAAAA+AGG | - | chr7_2:60244507-60244526 | None:intergenic | 15.0% |
| !! | TTAATACTAATATATGCAAA+AGG | - | chr7_2:60244827-60244846 | None:intergenic | 15.0% |
| !!! | TTTTCATATCATGTTATTAA+AGG | + | chr7_2:60245347-60245366 | Msa1066270:three_prime_UTR | 15.0% |
| !!! | CTTATAGTATTTTATATGCA+TGG | - | chr7_2:60241818-60241837 | None:intergenic | 20.0% |
| !!! | CTTTTTACTGAATTGAATTT+TGG | + | chr7_2:60241973-60241992 | Msa1066270:five_prime_UTR | 20.0% |
| !! | TTCAAAAATGGATAAAGTAA+AGG | - | chr7_2:60242976-60242995 | None:intergenic | 20.0% |
| !!! | TTTACTTTATCCATTTTTGA+AGG | + | chr7_2:60242975-60242994 | Msa1066270:intron | 20.0% |
| !! | TACAAAATATTGTGAAATAG+TGG | + | chr7_2:60243234-60243253 | Msa1066270:intron | 20.0% |
| !! | AGAACCTATAACATAAAATT+TGG | - | chr7_2:60243543-60243562 | None:intergenic | 20.0% |
| !!! | TTTTTTGTTGTTAACATAGA+TGG | + | chr7_2:60244362-60244381 | Msa1066270:intron | 20.0% |
| !! | AGTATTAAATACTTGATACT+TGG | + | chr7_2:60244839-60244858 | Msa1066270:intron | 20.0% |
| ! | TTAGCTTAAAATGCTTCTAA+TGG | + | chr7_2:60241919-60241938 | Msa1066270:five_prime_UTR | 25.0% |
| ! | TTCTTTGGATATCTTGTTAA+TGG | + | chr7_2:60242122-60242141 | Msa1066270:CDS | 25.0% |
| !! | GGTTTTTCTTGAATTCATTT+TGG | + | chr7_2:60242181-60242200 | Msa1066270:intron | 25.0% |
| !! | TTTTTATGGATTTAATCCTC+TGG | + | chr7_2:60242427-60242446 | Msa1066270:intron | 25.0% |
| ! | ATTCGGATTAATCTGATATT+TGG | + | chr7_2:60242532-60242551 | Msa1066270:intron | 25.0% |
| ! | ATTACAGTTTCATTTGATAC+TGG | + | chr7_2:60242637-60242656 | Msa1066270:intron | 25.0% |
| !!! | TCACTTTTATTTTCCATTGA+AGG | - | chr7_2:60242670-60242689 | None:intergenic | 25.0% |
| ! | ATTTAAACATAATCTGTGCA+GGG | - | chr7_2:60242902-60242921 | None:intergenic | 25.0% |
| ! | GATTATGTTTAAATCCACAA+AGG | + | chr7_2:60242908-60242927 | Msa1066270:CDS | 25.0% |
| !!! | TTTTTTTTCAGTTACCTTTG+TGG | - | chr7_2:60242925-60242944 | None:intergenic | 25.0% |
| ! | AAAATGGATAAAGTAAAGGT+AGG | - | chr7_2:60242972-60242991 | None:intergenic | 25.0% |
| ! | AAAACAGTATCCTTCAAAAA+TGG | - | chr7_2:60242988-60243007 | None:intergenic | 25.0% |
| !!! | ATTTTTGAAGGATACTGTTT+TGG | + | chr7_2:60242987-60243006 | Msa1066270:intron | 25.0% |
| !! | TTTGTGCTTACATCAATTTT+TGG | + | chr7_2:60243057-60243076 | Msa1066270:intron | 25.0% |
| !! | TGTGGATTACAAAAAAATAG+CGG | - | chr7_2:60243294-60243313 | None:intergenic | 25.0% |
| ! | TAATCATTGCTGCAAAATAA+TGG | - | chr7_2:60243382-60243401 | None:intergenic | 25.0% |
| ! | AAATCTGAATTACTGAAAGT+TGG | + | chr7_2:60243898-60243917 | Msa1066270:intron | 25.0% |
| !!! | TTTTAGAGAAAGAGCTTATA+CGG | + | chr7_2:60244148-60244167 | Msa1066270:intron | 25.0% |
| !! | GAAAAACTTGAAATCTGTTT+TGG | - | chr7_2:60244209-60244228 | None:intergenic | 25.0% |
| !!! | AGATTTCAAGTTTTTCTTCT+TGG | + | chr7_2:60244213-60244232 | Msa1066270:intron | 25.0% |
| !! | GAAAAACTTGAAATCTGTTT+TGG | - | chr7_2:60244209-60244228 | None:intergenic | 25.0% |
| !!! | AGATTTCAAGTTTTTCTTCT+TGG | + | chr7_2:60244213-60244232 | Msa1066270:intron | 25.0% |
| !! | TGTATTAGTATTTGAAGCAA+TGG | + | chr7_2:60244592-60244611 | Msa1066270:CDS | 25.0% |
| ! | TTGTGATAGTAAATTTACCA+TGG | - | chr7_2:60244681-60244700 | None:intergenic | 25.0% |
| ! | GTATGTGACTTATTAATGTT+AGG | - | chr7_2:60244748-60244767 | None:intergenic | 25.0% |
| GCTTGCTTAGACTAATAAAA+AGG | + | chr7_2:60241837-60241856 | Msa1066270:five_prime_UTR | 30.0% | |
| !! | TACTGAATTGAATTTTGGGT+TGG | + | chr7_2:60241978-60241997 | Msa1066270:five_prime_UTR | 30.0% |
| !!! | ATTTTGGGTTGGTTTCAAAT+TGG | + | chr7_2:60241989-60242008 | Msa1066270:five_prime_UTR | 30.0% |
| AAAGATGAAGAAAGAAGAAC+AGG | + | chr7_2:60242025-60242044 | Msa1066270:exon | 30.0% | |
| AAGATGAAGAAAGAAGAACA+GGG | + | chr7_2:60242026-60242045 | Msa1066270:exon | 30.0% | |
| ATTAATCCGAATTCAAACAC+TGG | - | chr7_2:60242524-60242543 | None:intergenic | 30.0% | |
| ! | TTCTCATTTGTGTGATTTTC+AGG | + | chr7_2:60242566-60242585 | Msa1066270:intron | 30.0% |
| ! | TGTATAACAGGCTTCATTTT+AGG | + | chr7_2:60242595-60242614 | Msa1066270:CDS | 30.0% |
| ! | TTTCTTTCTTGTTTCAGCTA+TGG | + | chr7_2:60242711-60242730 | Msa1066270:intron | 30.0% |
| TGGTACTTCACATTTATTCA+AGG | + | chr7_2:60242735-60242754 | Msa1066270:CDS | 30.0% | |
| GGTACTTCACATTTATTCAA+GGG | + | chr7_2:60242736-60242755 | Msa1066270:CDS | 30.0% | |
| CATTAAGGTAAATCAGAAAC+AGG | - | chr7_2:60242770-60242789 | None:intergenic | 30.0% | |
| !! | CTGTTTCTGATTTACCTTAA+TGG | + | chr7_2:60242768-60242787 | Msa1066270:CDS | 30.0% |
| GATTTAAACATAATCTGTGC+AGG | - | chr7_2:60242903-60242922 | None:intergenic | 30.0% | |
| ATGATGTCAATCTCTAATCA+CGG | + | chr7_2:60243083-60243102 | Msa1066270:intron | 30.0% | |
| ATATTGTGAAATAGTGGCTA+TGG | + | chr7_2:60243240-60243259 | Msa1066270:intron | 30.0% | |
| TCTGATATAGTACAAAGTGT+TGG | - | chr7_2:60243321-60243340 | None:intergenic | 30.0% | |
| AACACTTTGTACTATATCAG+AGG | + | chr7_2:60243320-60243339 | Msa1066270:intron | 30.0% | |
| CTAAAACATGTCAGCTAATT+TGG | - | chr7_2:60243435-60243454 | None:intergenic | 30.0% | |
| !! | ATGTTTTAGACACTATGTCA+TGG | + | chr7_2:60243446-60243465 | Msa1066270:intron | 30.0% |
| GCAGATATATACTCATGTAT+TGG | - | chr7_2:60243615-60243634 | None:intergenic | 30.0% | |
| GTATATATCTGCAATACTCT+TGG | + | chr7_2:60243623-60243642 | Msa1066270:CDS | 30.0% | |
| ! | TTGGTTATGGATTCTTTTCT+TGG | + | chr7_2:60243732-60243751 | Msa1066270:CDS | 30.0% |
| TTTGAGAGAGCTTATAGAAA+CGG | + | chr7_2:60244018-60244037 | Msa1066270:intron | 30.0% | |
| !! | GTTGCTAATTCAACTTTTTC+TGG | + | chr7_2:60244243-60244262 | Msa1066270:intron | 30.0% |
| ! | AATTCTCCTGTAAAAAGCAT+AGG | - | chr7_2:60244435-60244454 | None:intergenic | 30.0% |
| TTCATGTTCACAGGTAAATT+TGG | + | chr7_2:60244470-60244489 | Msa1066270:intron | 30.0% | |
| CAAACTGACATATTGAAATG+AGG | - | chr7_2:60244710-60244729 | None:intergenic | 30.0% | |
| CTCATTTCAATATGTCAGTT+TGG | + | chr7_2:60244708-60244727 | Msa1066270:intron | 30.0% | |
| TATGCAAAAGGTTAAGAGTT+TGG | - | chr7_2:60244815-60244834 | None:intergenic | 30.0% | |
| ! | GAATTGAAAGTTTTTCCCAA+TGG | + | chr7_2:60244865-60244884 | Msa1066270:intron | 30.0% |
| TTTCCCAATGGTAATTTAGT+TGG | + | chr7_2:60244877-60244896 | Msa1066270:intron | 30.0% | |
| TCACCAACTAAATTACCATT+GGG | - | chr7_2:60244883-60244902 | None:intergenic | 30.0% | |
| ATCACCAACTAAATTACCAT+TGG | - | chr7_2:60244884-60244903 | None:intergenic | 30.0% | |
| AAACCATTAACAGAACAACA+TGG | + | chr7_2:60245060-60245079 | Msa1066270:CDS | 30.0% | |
| AACCATTAACAGAACAACAT+GGG | + | chr7_2:60245061-60245080 | Msa1066270:CDS | 30.0% | |
| GAGTTTGTGTGTACTTACAA+TGG | - | chr7_2:60241757-60241776 | None:intergenic | 35.0% | |
| !! | AAGAAGAAGAGTTGTTTTCG+TGG | - | chr7_2:60241875-60241894 | None:intergenic | 35.0% |
| ! | GTTGGTTTCAAATTGGTGAA+TGG | + | chr7_2:60241996-60242015 | Msa1066270:five_prime_UTR | 35.0% |
| ATGAGAAATTGTTGCCATCT+GGG | - | chr7_2:60242086-60242105 | None:intergenic | 35.0% | |
| AATGAGAAATTGTTGCCATC+TGG | - | chr7_2:60242087-60242106 | None:intergenic | 35.0% | |
| CAATTTCTCATTTGTTCGTC+TGG | + | chr7_2:60242095-60242114 | Msa1066270:CDS | 35.0% | |
| TCTTGTTAATGGTATCTGTG+AGG | + | chr7_2:60242133-60242152 | Msa1066270:CDS | 35.0% | |
| ! | TACATGCTCTCTTCTCTTTT+TGG | + | chr7_2:60242160-60242179 | Msa1066270:intron | 35.0% |
| TTTGTGTCTTTGTGTGTAGA+AGG | + | chr7_2:60242296-60242315 | Msa1066270:intron | 35.0% | |
| TTGTGTCTTTGTGTGTAGAA+GGG | + | chr7_2:60242297-60242316 | Msa1066270:intron | 35.0% | |
| !!! | GGATTTAATCCTCTGGTTTT+CGG | + | chr7_2:60242434-60242453 | Msa1066270:intron | 35.0% |
| !!! | GATTTAATCCTCTGGTTTTC+GGG | + | chr7_2:60242435-60242454 | Msa1066270:intron | 35.0% |
| TTCGGTTAGGAGATAAAAGT+CGG | + | chr7_2:60242481-60242500 | Msa1066270:intron | 35.0% | |
| TTCTAGCCAGTGTTTGAATT+CGG | + | chr7_2:60242515-60242534 | Msa1066270:intron | 35.0% | |
| TTCAGGAATACGTGTATAAC+AGG | + | chr7_2:60242583-60242602 | Msa1066270:intron | 35.0% | |
| !!! | TACTGGTTTTTAGCCTTCAA+TGG | + | chr7_2:60242654-60242673 | Msa1066270:intron | 35.0% |
| ! | TTTCTTGTTTCAGCTATGGT+TGG | + | chr7_2:60242715-60242734 | Msa1066270:intron | 35.0% |
| ! | GCTTCACATAAGTTTTCCAT+GGG | - | chr7_2:60242818-60242837 | None:intergenic | 35.0% |
| ! | AGCTTCACATAAGTTTTCCA+TGG | - | chr7_2:60242819-60242838 | None:intergenic | 35.0% |
| !! | TGAAGGATACTGTTTTGGAT+CGG | + | chr7_2:60242992-60243011 | Msa1066270:intron | 35.0% |
| ! | TCGGTTATGTTTGAAACACA+TGG | + | chr7_2:60243011-60243030 | Msa1066270:intron | 35.0% |
| ! | ATGTTTGAAACACATGGAGA+TGG | + | chr7_2:60243017-60243036 | Msa1066270:intron | 35.0% |
| TCTCTAATCACGGAAAATAG+TGG | + | chr7_2:60243093-60243112 | Msa1066270:intron | 35.0% | |
| ! | GACACAGTGTTGTTAAATAG+CGG | + | chr7_2:60243159-60243178 | Msa1066270:intron | 35.0% |
| ACTATATCAGAGGACAATAG+TGG | + | chr7_2:60243330-60243349 | Msa1066270:intron | 35.0% | |
| GGTTGTAGCATAGCAAAATT+TGG | - | chr7_2:60243361-60243380 | None:intergenic | 35.0% | |
| TCACCTAATTTCAGTGTTGT+TGG | + | chr7_2:60243687-60243706 | Msa1066270:CDS | 35.0% | |
| ACACCAACAACACTGAAATT+AGG | - | chr7_2:60243693-60243712 | None:intergenic | 35.0% | |
| !! | GTTGGTGTTGTTATGATAAC+CGG | + | chr7_2:60243705-60243724 | Msa1066270:CDS | 35.0% |
| ! | TTGTTGAGAAAGCACAAAGA+TGG | - | chr7_2:60243830-60243849 | None:intergenic | 35.0% |
| !!! | AAGTTGGTCACTAGTTTTGA+CGG | + | chr7_2:60243914-60243933 | Msa1066270:intron | 35.0% |
| CAGGAGAATTATTCAAAGCA+TGG | + | chr7_2:60244445-60244464 | Msa1066270:CDS | 35.0% | |
| ACTAATACACCATACACGTA+GGG | - | chr7_2:60244581-60244600 | None:intergenic | 35.0% | |
| TACTAATACACCATACACGT+AGG | - | chr7_2:60244582-60244601 | None:intergenic | 35.0% | |
| GAAGCAATGGCTACATTTAT+AGG | + | chr7_2:60244605-60244624 | Msa1066270:CDS | 35.0% | |
| TAAATTTACCATGGCTGTAG+TGG | - | chr7_2:60244672-60244691 | None:intergenic | 35.0% | |
| TAATGTTAGGTGCAGTACAA+TGG | - | chr7_2:60244735-60244754 | None:intergenic | 35.0% | |
| ACAGATAACAACAGCAAGAA+AGG | + | chr7_2:60245002-60245021 | Msa1066270:intron | 35.0% | |
| TGGACTAATACTCATAGCTA+TGG | + | chr7_2:60245086-60245105 | Msa1066270:CDS | 35.0% | |
| GGACTAATACTCATAGCTAT+GGG | + | chr7_2:60245087-60245106 | Msa1066270:CDS | 35.0% | |
| ! | ATTTAAGGCTCTCTTAGGTA+TGG | - | chr7_2:60245148-60245167 | None:intergenic | 35.0% |
| ! | GAAGTATTTAAGGCTCTCTT+AGG | - | chr7_2:60245153-60245172 | None:intergenic | 35.0% |
| !! | GTCTCTCTGAGAAGTATTTA+AGG | - | chr7_2:60245163-60245182 | None:intergenic | 35.0% |
| ! | TACTACTGTTGATGAAGAGT+TGG | + | chr7_2:60245197-60245216 | Msa1066270:CDS | 35.0% |
| ! | ACTACTGTTGATGAAGAGTT+GGG | + | chr7_2:60245198-60245217 | Msa1066270:CDS | 35.0% |
| TAGGTGAAGAAGATGATGAA+AGG | + | chr7_2:60245238-60245257 | Msa1066270:CDS | 35.0% | |
| TATCATTCAACCTAGACCAA+GGG | - | chr7_2:60245267-60245286 | None:intergenic | 35.0% | |
| TTATCATTCAACCTAGACCA+AGG | - | chr7_2:60245268-60245287 | None:intergenic | 35.0% | |
| TGTTCGTCTGGATTCTTCTT+TGG | + | chr7_2:60242107-60242126 | Msa1066270:CDS | 40.0% | |
| TGTGTCTTTGTGTGTAGAAG+GGG | + | chr7_2:60242298-60242317 | Msa1066270:intron | 40.0% | |
| !! | GGAAAATGGCTCTGATAATC+TGG | + | chr7_2:60242456-60242475 | Msa1066270:intron | 40.0% |
| ! | TGATAATCTGGAGTTCGGTT+AGG | + | chr7_2:60242468-60242487 | Msa1066270:intron | 40.0% |
| TCGGTTAGGAGATAAAAGTC+GGG | + | chr7_2:60242482-60242501 | Msa1066270:intron | 40.0% | |
| ! | ACACTGGCTAGAACAATCAT+TGG | - | chr7_2:60242508-60242527 | None:intergenic | 40.0% |
| GCTTGCTTGTGAAACCATTA+AGG | - | chr7_2:60242785-60242804 | None:intergenic | 40.0% | |
| TGGTTTCACAAGCAAGCAAA+TGG | + | chr7_2:60242788-60242807 | Msa1066270:CDS | 40.0% | |
| AAGCTTTCTGCTGTACTCAT+GGG | + | chr7_2:60242834-60242853 | Msa1066270:CDS | 40.0% | |
| GGATCACATGGCTTAACAAA+GGG | + | chr7_2:60242855-60242874 | Msa1066270:CDS | 40.0% | |
| TGGCTTAACAAAGGGTTCTT+TGG | + | chr7_2:60242863-60242882 | Msa1066270:CDS | 40.0% | |
| !! | GTACAAAGTGTTGGCAATTG+TGG | - | chr7_2:60243312-60243331 | None:intergenic | 40.0% |
| GTTCTGCCAGTGATGATAAT+GGG | + | chr7_2:60243558-60243577 | Msa1066270:CDS | 40.0% | |
| !! | ATAATGGGTGCCTTTATTCC+TGG | + | chr7_2:60243573-60243592 | Msa1066270:CDS | 40.0% |
| TCTTCTCAGACCAGGAATAA+AGG | - | chr7_2:60243586-60243605 | None:intergenic | 40.0% | |
| ! | GGATATTTTCTTCTCAGACC+AGG | - | chr7_2:60243594-60243613 | None:intergenic | 40.0% |
| ! | TCTGCAATACTCTTGGTAGT+TGG | + | chr7_2:60243630-60243649 | Msa1066270:CDS | 40.0% |
| TGTTATGATAACCGGTGCTT+TGG | + | chr7_2:60243713-60243732 | Msa1066270:CDS | 40.0% | |
| AGAATCCATAACCAAAGCAC+CGG | - | chr7_2:60243727-60243746 | None:intergenic | 40.0% | |
| TATGAATCCTGATACCACAC+AGG | + | chr7_2:60243779-60243798 | Msa1066270:CDS | 40.0% | |
| TAGAAAATCGATCACCTGTG+TGG | - | chr7_2:60243796-60243815 | None:intergenic | 40.0% | |
| ! | GAGAAAGCACAAAGATGGTT+AGG | - | chr7_2:60243825-60243844 | None:intergenic | 40.0% |
| AGCATAGGTGGGATTAAGAA+AGG | - | chr7_2:60244420-60244439 | None:intergenic | 40.0% | |
| !! | ATCCCACCTATGCTTTTTAC+AGG | + | chr7_2:60244426-60244445 | Msa1066270:CDS | 40.0% |
| ! | CTCCTGTAAAAAGCATAGGT+GGG | - | chr7_2:60244431-60244450 | None:intergenic | 40.0% |
| ! | TCTCCTGTAAAAAGCATAGG+TGG | - | chr7_2:60244432-60244451 | None:intergenic | 40.0% |
| AGCACCAAAAAGGGCAATTA+GGG | - | chr7_2:60244648-60244667 | None:intergenic | 40.0% | |
| CTCCCATGTTGTTCTGTTAA+TGG | - | chr7_2:60245066-60245085 | None:intergenic | 40.0% | |
| TTAACAGAACAACATGGGAG+TGG | + | chr7_2:60245066-60245085 | Msa1066270:CDS | 40.0% | |
| GTGAAGAAGATGATGAAAGG+AGG | + | chr7_2:60245241-60245260 | Msa1066270:CDS | 40.0% | |
| !! | GAACAGGGTCGTAGTTTGTT+TGG | + | chr7_2:60242041-60242060 | Msa1066270:CDS | 45.0% |
| !!! | TCCTCTGGTTTTCGGGAAAA+TGG | + | chr7_2:60242442-60242461 | Msa1066270:intron | 45.0% |
| ! | GGCTCTGATAATCTGGAGTT+CGG | + | chr7_2:60242463-60242482 | Msa1066270:intron | 45.0% |
| GAAGCTTTCTGCTGTACTCA+TGG | + | chr7_2:60242833-60242852 | Msa1066270:CDS | 45.0% | |
| GGGATCACATGGCTTAACAA+AGG | + | chr7_2:60242854-60242873 | Msa1066270:CDS | 45.0% | |
| CTCTTCAAACTGCGTCATTC+AGG | + | chr7_2:60243475-60243494 | Msa1066270:intron | 45.0% | |
| GGTTCTGCCAGTGATGATAA+TGG | + | chr7_2:60243557-60243576 | Msa1066270:intron | 45.0% | |
| ! | AAGGCACCCATTATCATCAC+TGG | - | chr7_2:60243567-60243586 | None:intergenic | 45.0% |
| GTGCGTCTGCTAGTGTAAAT+AGG | - | chr7_2:60243662-60243681 | None:intergenic | 45.0% | |
| GATAACCGGTGCTTTGGTTA+TGG | + | chr7_2:60243719-60243738 | Msa1066270:CDS | 45.0% | |
| CTCTTCTGCTCTACAGTAGT+GGG | + | chr7_2:60244390-60244409 | Msa1066270:CDS | 45.0% | |
| AGCATGGACTTCATGTTCAC+AGG | + | chr7_2:60244461-60244480 | Msa1066270:CDS | 45.0% | |
| TTAGGGAGAGGACTGAAACT+TGG | - | chr7_2:60244631-60244650 | None:intergenic | 45.0% | |
| CAAAAAGGGCAATTAGGGAG+AGG | - | chr7_2:60244643-60244662 | None:intergenic | 45.0% | |
| ! | CTCTCCCTAATTGCCCTTTT+TGG | + | chr7_2:60244641-60244660 | Msa1066270:CDS | 45.0% |
| CAGCACCAAAAAGGGCAATT+AGG | - | chr7_2:60244649-60244668 | None:intergenic | 45.0% | |
| TGTAGTGGCAGCACCAAAAA+GGG | - | chr7_2:60244657-60244676 | None:intergenic | 45.0% | |
| !! | GGTATGGCAGGTTTGTTTTC+AGG | - | chr7_2:60245132-60245151 | None:intergenic | 45.0% |
| CTTCTTCACCTACAGAACCA+TGG | - | chr7_2:60245230-60245249 | None:intergenic | 45.0% | |
| CACTCTCTGATAGACCCAGA+TGG | + | chr7_2:60242069-60242088 | Msa1066270:CDS | 50.0% | |
| !! | GCCATTTTCCCGAAAACCAG+AGG | - | chr7_2:60242446-60242465 | None:intergenic | 50.0% |
| GCAAGCAAATGGTGAACCCA+TGG | + | chr7_2:60242799-60242818 | Msa1066270:CDS | 50.0% | |
| GCTGTACTCATGGGATCACA+TGG | + | chr7_2:60242843-60242862 | Msa1066270:CDS | 50.0% | |
| GCAGCTAATGCGTTGTAGTG+CGG | - | chr7_2:60243134-60243153 | None:intergenic | 50.0% | |
| GCTATGGCACTGTTGCATAG+CGG | + | chr7_2:60243256-60243275 | Msa1066270:intron | 50.0% | |
| TCGATCACCTGTGTGGTATC+AGG | - | chr7_2:60243789-60243808 | None:intergenic | 50.0% | |
| GCTCTTCTGCTCTACAGTAG+TGG | + | chr7_2:60244389-60244408 | Msa1066270:CDS | 50.0% | |
| ATACACGTAGGGATGCTGCA+AGG | - | chr7_2:60244570-60244589 | None:intergenic | 50.0% | |
| TTGCAGCATCCCTACGTGTA+TGG | + | chr7_2:60244569-60244588 | Msa1066270:intron | 50.0% | |
| CTGTAGTGGCAGCACCAAAA+AGG | - | chr7_2:60244658-60244677 | None:intergenic | 50.0% | |
| AAGGCTCTCTTAGGTATGGC+AGG | - | chr7_2:60245144-60245163 | None:intergenic | 50.0% | |
| GAAGAGTTGGGAACACTCCA+TGG | + | chr7_2:60245210-60245229 | Msa1066270:CDS | 50.0% | |
| ! | GGAACACTCCATGGTTCTGT+AGG | + | chr7_2:60245219-60245238 | Msa1066270:CDS | 50.0% |
| AGATGATGAAAGGAGGCCCT+TGG | + | chr7_2:60245248-60245267 | Msa1066270:CDS | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr7_2:60241774-60241793 | None:intergenic | 50.0% | |
| GCTAATGCGTTGTAGTGCGG+TGG | - | chr7_2:60243131-60243150 | None:intergenic | 55.0% | |
| TGAAAGGAGGCCCTTGGTCT+AGG | + | chr7_2:60245254-60245273 | Msa1066270:CDS | 55.0% | |
| !! | TGGTGCTGCCACTACAGCCA+TGG | + | chr7_2:60244661-60244680 | Msa1066270:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 60241741 | 60245486 | 60241741 | ID=Msa1066270;Name=Msa1066270 |
| chr7_2 | mRNA | 60241741 | 60245486 | 60241741 | ID=Msa1066270-mRNA-1;Parent=Msa1066270;Name=Msa1066270-mRNA-1;_AED=0.03;_eAED=0.03;_QI=288|1|1|1|1|1|7|211|359 |
| chr7_2 | exon | 60241741 | 60242154 | 60241741 | ID=Msa1066270-mRNA-1:exon:11748;Parent=Msa1066270-mRNA-1 |
| chr7_2 | exon | 60242588 | 60242616 | 60242588 | ID=Msa1066270-mRNA-1:exon:11749;Parent=Msa1066270-mRNA-1 |
| chr7_2 | exon | 60242728 | 60242929 | 60242728 | ID=Msa1066270-mRNA-1:exon:11750;Parent=Msa1066270-mRNA-1 |
| chr7_2 | exon | 60243558 | 60243800 | 60243558 | ID=Msa1066270-mRNA-1:exon:11751;Parent=Msa1066270-mRNA-1 |
| chr7_2 | exon | 60244381 | 60244482 | 60244381 | ID=Msa1066270-mRNA-1:exon:11752;Parent=Msa1066270-mRNA-1 |
| chr7_2 | exon | 60244575 | 60244682 | 60244575 | ID=Msa1066270-mRNA-1:exon:11753;Parent=Msa1066270-mRNA-1 |
| chr7_2 | exon | 60245006 | 60245486 | 60245006 | ID=Msa1066270-mRNA-1:exon:11754;Parent=Msa1066270-mRNA-1 |
| chr7_2 | five_prime_UTR | 60241741 | 60242028 | 60241741 | ID=Msa1066270-mRNA-1:five_prime_utr;Parent=Msa1066270-mRNA-1 |
| chr7_2 | CDS | 60242029 | 60242154 | 60242029 | ID=Msa1066270-mRNA-1:cds;Parent=Msa1066270-mRNA-1 |
| chr7_2 | CDS | 60242588 | 60242616 | 60242588 | ID=Msa1066270-mRNA-1:cds;Parent=Msa1066270-mRNA-1 |
| chr7_2 | CDS | 60242728 | 60242929 | 60242728 | ID=Msa1066270-mRNA-1:cds;Parent=Msa1066270-mRNA-1 |
| chr7_2 | CDS | 60243558 | 60243800 | 60243558 | ID=Msa1066270-mRNA-1:cds;Parent=Msa1066270-mRNA-1 |
| chr7_2 | CDS | 60244381 | 60244482 | 60244381 | ID=Msa1066270-mRNA-1:cds;Parent=Msa1066270-mRNA-1 |
| chr7_2 | CDS | 60244575 | 60244682 | 60244575 | ID=Msa1066270-mRNA-1:cds;Parent=Msa1066270-mRNA-1 |
| chr7_2 | CDS | 60245006 | 60245275 | 60245006 | ID=Msa1066270-mRNA-1:cds;Parent=Msa1066270-mRNA-1 |
| chr7_2 | three_prime_UTR | 60245276 | 60245486 | 60245276 | ID=Msa1066270-mRNA-1:three_prime_utr;Parent=Msa1066270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
