Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1027700 | XP_024627166.1 | 98.061 | 361 | 4 | 2 | 1 | 359 | 1 | 360 | 0.0 | 717 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1027700 | sp|Q29Q28|UTR2_ARATH | 78.711 | 357 | 63 | 1 | 3 | 359 | 2 | 345 | 0.0 | 559 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1027700 | A2Q3P6 | 98.061 | 361 | 4 | 2 | 1 | 359 | 1 | 360 | 0.0 | 717 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047980 | Msa1027700 | 0.810037 | 1.406345e-50 | -8.615850e-47 |
| Msa0072170 | Msa1027700 | 0.837698 | 4.459267e-57 | -8.615850e-47 |
| Msa0100800 | Msa1027700 | 0.802780 | 4.768144e-49 | -8.615850e-47 |
| Msa0120540 | Msa1027700 | 0.839670 | 1.379212e-57 | -8.615850e-47 |
| Msa0626940 | Msa1027700 | 0.816343 | 5.806014e-52 | -8.615850e-47 |
| Msa0643320 | Msa1027700 | 0.802329 | 5.906379e-49 | -8.615850e-47 |
| Msa0683140 | Msa1027700 | 0.802002 | 6.897468e-49 | -8.615850e-47 |
| Msa0126880 | Msa1027700 | 0.826056 | 3.343739e-54 | -8.615850e-47 |
| Msa0166750 | Msa1027700 | 0.800343 | 1.506631e-48 | -8.615850e-47 |
| Msa0171980 | Msa1027700 | 0.825093 | 5.656592e-54 | -8.615850e-47 |
| Msa0229360 | Msa1027700 | 0.806756 | 7.046235e-50 | -8.615850e-47 |
| Msa0437690 | Msa1027700 | -0.807445 | 5.036352e-50 | -8.615850e-47 |
| Msa0474700 | Msa1027700 | 0.805210 | 1.490178e-49 | -8.615850e-47 |
| Msa0981430 | Msa1027700 | 0.804073 | 2.573795e-49 | -8.615850e-47 |
| Msa1027700 | Msa1066270 | 0.850987 | 1.189611e-60 | -8.615850e-47 |
| Msa1027700 | Msa1131560 | 0.801200 | 1.007418e-48 | -8.615850e-47 |
| Msa1027700 | Msa1155230 | 0.936663 | 1.210704e-97 | -8.615850e-47 |
| Msa1027700 | Msa1188560 | 0.812534 | 4.040355e-51 | -8.615850e-47 |
| Msa1027700 | Msa1226610 | 0.801563 | 8.489097e-49 | -8.615850e-47 |
| Msa1027700 | Msa1242640 | 0.805733 | 1.157791e-49 | -8.615850e-47 |
| Msa1027700 | Msa1335560 | 0.800034 | 1.741357e-48 | -8.615850e-47 |
| Msa1027700 | Msa1396940 | 0.800389 | 1.474830e-48 | -8.615850e-47 |
| Msa1027700 | Msa1459960 | 0.812068 | 5.105007e-51 | -8.615850e-47 |
| Msa0265160 | Msa1027700 | 0.810157 | 1.325293e-50 | -8.615850e-47 |
| Msa0509950 | Msa1027700 | -0.800930 | 1.143698e-48 | -8.615850e-47 |
| Msa0602370 | Msa1027700 | 0.830846 | 2.333079e-55 | -8.615850e-47 |
| Msa0882730 | Msa1027700 | 0.806864 | 6.688565e-50 | -8.615850e-47 |
| Msa0899290 | Msa1027700 | 0.801939 | 7.106468e-49 | -8.615850e-47 |
| Msa0947800 | Msa1027700 | 0.821429 | 4.056570e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1027700 | MtrunA17_Chr7g0246821 | 98.061 | 361 | 4 | 2 | 1 | 359 | 1 | 360 | 0.0 | 717 |
| Msa1027700 | MtrunA17_Chr5g0416331 | 24.756 | 307 | 200 | 9 | 27 | 310 | 17 | 315 | 1.36e-17 | 82.8 |
| Msa1027700 | MtrunA17_Chr2g0327761 | 24.576 | 236 | 168 | 4 | 103 | 331 | 114 | 346 | 2.54e-14 | 73.2 |
| Msa1027700 | MtrunA17_Chr4g0030811 | 26.160 | 237 | 163 | 6 | 103 | 331 | 117 | 349 | 3.07e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1027700 | AT4G23010.1 | 78.711 | 357 | 63 | 1 | 3 | 359 | 2 | 345 | 0.0 | 559 |
| Msa1027700 | AT1G12600.1 | 79.050 | 358 | 63 | 3 | 2 | 359 | 4 | 349 | 0.0 | 556 |
| Msa1027700 | AT4G23010.2 | 75.134 | 374 | 63 | 2 | 3 | 359 | 2 | 362 | 0.0 | 550 |
| Msa1027700 | AT4G23010.3 | 69.554 | 404 | 63 | 2 | 3 | 359 | 2 | 392 | 0.0 | 537 |
| Msa1027700 | AT1G14360.1 | 24.620 | 329 | 211 | 10 | 27 | 332 | 17 | 331 | 7.01e-17 | 80.9 |
| Msa1027700 | AT2G02810.1 | 26.568 | 271 | 174 | 8 | 26 | 276 | 16 | 281 | 3.59e-16 | 79.0 |
| Msa1027700 | AT3G46180.1 | 24.756 | 307 | 189 | 10 | 66 | 347 | 57 | 346 | 3.43e-14 | 73.2 |
| Msa1027700 | AT5G59740.1 | 26.545 | 275 | 170 | 9 | 66 | 315 | 56 | 323 | 5.91e-13 | 69.7 |
Find 87 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCCATGTTGTTCTGTTAA+TGG | 0.102094 | 7_1:-60216652 | None:intergenic |
| CTGTTTCTGATTTACCTTAA+TGG | 0.191716 | 7_1:+60214384 | Msa1027700:CDS |
| GAAGCAATGGCTACATTTAT+AGG | 0.201415 | 7_1:+60216162 | Msa1027700:CDS |
| GTCTCTCTGAGAAGTATTTA+AGG | 0.206804 | 7_1:-60216749 | None:intergenic |
| TGTTCGTCTGGATTCTTCTT+TGG | 0.266789 | 7_1:+60213706 | Msa1027700:CDS |
| GCTTGCTTGTGAAACCATTA+AGG | 0.274635 | 7_1:-60214398 | None:intergenic |
| CAATTTCTCATTTGTTCGTC+TGG | 0.276606 | 7_1:+60213694 | Msa1027700:CDS |
| TGGCTTAACAAAGGGTTCTT+TGG | 0.276678 | 7_1:+60214479 | Msa1027700:CDS |
| TTGATCACCTGTGTGGTATC+AGG | 0.277949 | 7_1:-60215401 | None:intergenic |
| TTCAGGAATATGTGTATAAC+AGG | 0.287196 | 7_1:+60214205 | Msa1027700:intron |
| GATAACCGGTGCTTTGGTTA+TGG | 0.297053 | 7_1:+60215334 | Msa1027700:CDS |
| CTGTAGTGGCAGCACCAAAA+AGG | 0.297504 | 7_1:-60216212 | None:intergenic |
| TAAATGAATTTATATCTAAA+AGG | 0.299555 | 7_1:-60217008 | None:intergenic |
| ACACCAACAACACTGAAATT+AGG | 0.324279 | 7_1:-60215305 | None:intergenic |
| TCTTCTCAGACCAGGAATAA+AGG | 0.336739 | 7_1:-60215198 | None:intergenic |
| ATAATGGGTGCCTTTATTCC+TGG | 0.337021 | 7_1:+60215188 | Msa1027700:CDS |
| TTAGCTTAAAATGCTTCTAA+TGG | 0.341063 | 7_1:+60213518 | Msa1027700:five_prime_UTR |
| GAACAGGGTCGTAGTTTGTT+TGG | 0.348804 | 7_1:+60213640 | Msa1027700:CDS |
| GCTTGCTTAGACTAATAAAA+AGG | 0.351637 | 7_1:+60213436 | Msa1027700:five_prime_UTR |
| GAAGTATTTAAGGCTCTCTT+AGG | 0.362841 | 7_1:-60216739 | None:intergenic |
| AAAGATGAAGAAAGAAGAAC+AGG | 0.380383 | 7_1:+60213624 | Msa1027700:exon |
| AATGAGAAATTGTTGCCATC+TGG | 0.389074 | 7_1:-60213683 | None:intergenic |
| TTCTTTGGATATCTTGTCAA+TGG | 0.390936 | 7_1:+60213721 | Msa1027700:CDS |
| GTGCGTCTGCTAGTGTAAAT+AGG | 0.391821 | 7_1:-60215274 | None:intergenic |
| TCACCTAATTTCAGTGTTGT+TGG | 0.400864 | 7_1:+60215302 | Msa1027700:CDS |
| TCTGCAATACTCTTGGTAGT+TGG | 0.425608 | 7_1:+60215245 | Msa1027700:CDS |
| GTTGGTGTTGTTATGATAAC+CGG | 0.429713 | 7_1:+60215320 | Msa1027700:CDS |
| TTTCTTGTCTCAGCTATGGT+TGG | 0.441806 | 7_1:+60214331 | Msa1027700:intron |
| CATTAAGGTAAATCAGAAAC+AGG | 0.449175 | 7_1:-60214383 | None:intergenic |
| ATGAGAAATTGTTGCCATCT+GGG | 0.449700 | 7_1:-60213682 | None:intergenic |
| TTGCAGCATCCCTACGTGTA+TGG | 0.451909 | 7_1:+60216126 | Msa1027700:intron |
| TACTACTGTTGATGAAGAGT+TGG | 0.452829 | 7_1:+60216786 | Msa1027700:CDS |
| GGTTCTGCCAGTGATGATAA+TGG | 0.453653 | 7_1:+60215172 | Msa1027700:intron |
| TGAAAGGAGGCCCTTGGTCT+AGG | 0.454515 | 7_1:+60216843 | Msa1027700:CDS |
| GATTTAAACATAATCTGTGC+AGG | 0.457212 | 7_1:-60214516 | None:intergenic |
| GCAGATATATACTCATGTAT+TGG | 0.466873 | 7_1:-60215227 | None:intergenic |
| AAGGCTCTCTTAGGTATGGC+AGG | 0.469356 | 7_1:-60216730 | None:intergenic |
| TGTTATGATAACCGGTGCTT+TGG | 0.471959 | 7_1:+60215328 | Msa1027700:CDS |
| TGGTACTTCACATTTATTCA+AGG | 0.474364 | 7_1:+60214351 | Msa1027700:CDS |
| CTCTTCTGCTCTACAGTAGT+GGG | 0.478965 | 7_1:+60215947 | Msa1027700:CDS |
| TGGTTTCACAAGCAAGCAAA+TGG | 0.484985 | 7_1:+60214404 | Msa1027700:CDS |
| ACAGATAACAACAGCAAGAA+AGG | 0.486312 | 7_1:+60216591 | Msa1027700:intron |
| GTTGGTTTCAAATTGGTGAA+TGG | 0.498923 | 7_1:+60213595 | Msa1027700:five_prime_UTR |
| AGCATAGGTGGGATTAAGAA+AGG | 0.503212 | 7_1:-60215974 | None:intergenic |
| CAGGAGAATTATTCAAAGCA+TGG | 0.503301 | 7_1:+60216002 | Msa1027700:CDS |
| GAAGCTTTCTGCTGTACTCA+TGG | 0.507955 | 7_1:+60214449 | Msa1027700:CDS |
| ATTTAAGGCTCTCTTAGGTA+TGG | 0.516737 | 7_1:-60216734 | None:intergenic |
| TGGACTAATACTCATAGCTA+TGG | 0.524183 | 7_1:+60216675 | Msa1027700:CDS |
| ACTACTGTTGATGAAGAGTT+GGG | 0.528240 | 7_1:+60216787 | Msa1027700:CDS |
| TGATCACCTGTGTGGTATCA+GGG | 0.529466 | 7_1:-60215400 | None:intergenic |
| GTATATATCTGCAATACTCT+TGG | 0.531600 | 7_1:+60215238 | Msa1027700:CDS |
| TGTATTAGTATTTGAAGCAA+TGG | 0.532065 | 7_1:+60216149 | Msa1027700:CDS |
| GTTCTGCCAGTGATGATAAT+GGG | 0.533555 | 7_1:+60215173 | Msa1027700:CDS |
| TTAGGGAGAGGACTGAAACT+TGG | 0.534675 | 7_1:-60216185 | None:intergenic |
| TGGTGCTGCCACTACAGCCA+TGG | 0.543212 | 7_1:+60216218 | Msa1027700:CDS |
| AAGCTTTCTGCTGTACTCAT+GGG | 0.546977 | 7_1:+60214450 | Msa1027700:CDS |
| GGATCACATGGCTTAACAAA+GGG | 0.550447 | 7_1:+60214471 | Msa1027700:CDS |
| AGCATGGACTTCATGTTCAC+AGG | 0.552121 | 7_1:+60216018 | Msa1027700:CDS |
| AAGGCACCCATTATCATCAC+TGG | 0.553179 | 7_1:-60215179 | None:intergenic |
| TAGGTGAAGAAGATGATGAA+AGG | 0.558799 | 7_1:+60216827 | Msa1027700:CDS |
| TAAATTTACCATGGCTGTAG+TGG | 0.562393 | 7_1:-60216226 | None:intergenic |
| GAAGAGTTGGGAACACTCCA+TGG | 0.566100 | 7_1:+60216799 | Msa1027700:CDS |
| GAATTTGTGTGTACTTACAA+TGG | 0.568400 | 7_1:-60213361 | None:intergenic |
| AGATGATGAAAGGAGGCCCT+TGG | 0.573444 | 7_1:+60216837 | Msa1027700:CDS |
| GCAAGCAAATGGTGAACCCA+TGG | 0.573890 | 7_1:+60214415 | Msa1027700:CDS |
| GCTCTTCTGCTCTACAGTAG+TGG | 0.575505 | 7_1:+60215946 | Msa1027700:CDS |
| GCTGTACTCATGGGATCACA+TGG | 0.577442 | 7_1:+60214459 | Msa1027700:CDS |
| GGACTAATACTCATAGCTAT+GGG | 0.581423 | 7_1:+60216676 | Msa1027700:CDS |
| GGAACACTCCATGGTTCTGT+AGG | 0.587445 | 7_1:+60216808 | Msa1027700:CDS |
| AGAATCCATAACCAAAGCAC+CGG | 0.588172 | 7_1:-60215339 | None:intergenic |
| GGGATCACATGGCTTAACAA+AGG | 0.604916 | 7_1:+60214470 | Msa1027700:CDS |
| TATCATTCAACCTAGACCAA+GGG | 0.609666 | 7_1:-60216853 | None:intergenic |
| ACTAATACACCATACACGTA+GGG | 0.615564 | 7_1:-60216135 | None:intergenic |
| TTAACAGAACAACATGGGAG+TGG | 0.616464 | 7_1:+60216655 | Msa1027700:CDS |
| TTATCATTCAACCTAGACCA+AGG | 0.621202 | 7_1:-60216854 | None:intergenic |
| AACCATTAACAGAACAACAT+GGG | 0.639193 | 7_1:+60216650 | Msa1027700:CDS |
| ATTTAAACATAATCTGTGCA+GGG | 0.643855 | 7_1:-60214515 | None:intergenic |
| CACTCTCTGATAGACCCAGA+TGG | 0.644417 | 7_1:+60213668 | Msa1027700:CDS |
| CTTCTTCACCTACAGAACCA+TGG | 0.652962 | 7_1:-60216816 | None:intergenic |
| AAACCATTAACAGAACAACA+TGG | 0.655932 | 7_1:+60216649 | Msa1027700:CDS |
| GATTATGTTTAAATCCACAA+AGG | 0.671381 | 7_1:+60214524 | Msa1027700:CDS |
| GTGAAGAAGATGATGAAAGG+AGG | 0.673119 | 7_1:+60216830 | Msa1027700:CDS |
| TACTAATACACCATACACGT+AGG | 0.688815 | 7_1:-60216136 | None:intergenic |
| AAGATGAAGAAAGAAGAACA+GGG | 0.718452 | 7_1:+60213625 | Msa1027700:exon |
| TATGAACCCTGATACCACAC+AGG | 0.720480 | 7_1:+60215394 | Msa1027700:CDS |
| TCTTGTCAATGGTATCTGTG+AGG | 0.723438 | 7_1:+60213732 | Msa1027700:CDS |
| TAGAAAATTGATCACCTGTG+TGG | 0.789950 | 7_1:-60215408 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTGTTTTATTTGATTT+TGG | + | chr7_1:60213918-60213937 | Msa1027700:intron | 10.0% |
| !!! | TATATATGAAGTTTTTATTA+TGG | + | chr7_1:60214020-60214039 | Msa1027700:intron | 10.0% |
| !! | AAAATTTGGATTTATTATAT+TGG | - | chr7_1:60215144-60215163 | None:intergenic | 10.0% |
| !! | AATTTAAAAAATCACAAATT+TGG | - | chr7_1:60215486-60215505 | None:intergenic | 10.0% |
| !! | TAAATGAATTTATATCTAAA+AGG | - | chr7_1:60217011-60217030 | None:intergenic | 10.0% |
| !!! | TTTTTACTGAATTGAATTTT+GGG | + | chr7_1:60213573-60213592 | Msa1027700:five_prime_UTR | 15.0% |
| !! | ATAGATAAGATATAAAAAGA+TGG | + | chr7_1:60213851-60213870 | Msa1027700:intron | 15.0% |
| !!! | AAAAATGAAATTTGTGATTT+TGG | + | chr7_1:60214304-60214323 | Msa1027700:intron | 15.0% |
| !!! | AAATCCAAATTTTATGTTAT+AGG | + | chr7_1:60215151-60215170 | Msa1027700:intron | 15.0% |
| !! | AAATTAATCATATACTTGTT+GGG | - | chr7_1:60215460-60215479 | None:intergenic | 15.0% |
| !! | TAAATTAATCATATACTTGT+TGG | - | chr7_1:60215461-60215480 | None:intergenic | 15.0% |
| !! | GCTCAAATAATTTAATAAAT+AGG | - | chr7_1:60215579-60215598 | None:intergenic | 15.0% |
| !!! | AAGTATAAGAATTTTTAATG+TGG | - | chr7_1:60215899-60215918 | None:intergenic | 15.0% |
| !!! | ATATATTAGTTTAGACAAAA+AGG | - | chr7_1:60216064-60216083 | None:intergenic | 15.0% |
| !! | TTAATACTAATATATGCAAA+AGG | - | chr7_1:60216384-60216403 | None:intergenic | 15.0% |
| !!! | TTTTCATATCATGTTATTAA+AGG | + | chr7_1:60216936-60216955 | Msa1027700:three_prime_UTR | 15.0% |
| !!! | CTTATAGTATTTTATATGCA+TGG | - | chr7_1:60213417-60213436 | None:intergenic | 20.0% |
| !!! | CTTTTTACTGAATTGAATTT+TGG | + | chr7_1:60213572-60213591 | Msa1027700:five_prime_UTR | 20.0% |
| !! | GAAGTTATAAATCTGATATT+TGG | + | chr7_1:60214153-60214172 | Msa1027700:intron | 20.0% |
| !! | TACAAAATATTGTGAAATAG+TGG | + | chr7_1:60214849-60214868 | Msa1027700:intron | 20.0% |
| !! | AGAACCTATAACATAAAATT+TGG | - | chr7_1:60215158-60215177 | None:intergenic | 20.0% |
| !!! | TTTTTTGTTGTTAACATAGA+TGG | + | chr7_1:60215919-60215938 | Msa1027700:intron | 20.0% |
| !! | AGTATTAAATACTTGATACT+TGG | + | chr7_1:60216396-60216415 | Msa1027700:intron | 20.0% |
| !!! | GATACTTGGTTTTTTTTTTT+TGG | + | chr7_1:60216410-60216429 | Msa1027700:intron | 20.0% |
| ! | TTAGCTTAAAATGCTTCTAA+TGG | + | chr7_1:60213518-60213537 | Msa1027700:five_prime_UTR | 25.0% |
| !! | TATATGCTCTTTTCTCTTTT+TGG | + | chr7_1:60213759-60213778 | Msa1027700:intron | 25.0% |
| ! | ATTAATCTGAGTTCAAATTC+TGG | - | chr7_1:60214131-60214150 | None:intergenic | 25.0% |
| !!! | TACTGATTTTTAGCTTTCAA+TGG | + | chr7_1:60214276-60214295 | Msa1027700:intron | 25.0% |
| ! | ATTTAAACATAATCTGTGCA+GGG | - | chr7_1:60214518-60214537 | None:intergenic | 25.0% |
| ! | GATTATGTTTAAATCCACAA+AGG | + | chr7_1:60214524-60214543 | Msa1027700:CDS | 25.0% |
| ! | TTCAAAAATGGGTAAAGTAA+AGG | - | chr7_1:60214591-60214610 | None:intergenic | 25.0% |
| !!! | TTTACTTTACCCATTTTTGA+AGG | + | chr7_1:60214590-60214609 | Msa1027700:intron | 25.0% |
| ! | AAACAGTATCCTTCAAAAAT+GGG | - | chr7_1:60214602-60214621 | None:intergenic | 25.0% |
| ! | AAAACAGTATCCTTCAAAAA+TGG | - | chr7_1:60214603-60214622 | None:intergenic | 25.0% |
| !!! | ATTTTTGAAGGATACTGTTT+TGG | + | chr7_1:60214602-60214621 | Msa1027700:intron | 25.0% |
| !! | TTTGTGCTTACATCAATTTT+TGG | + | chr7_1:60214672-60214691 | Msa1027700:intron | 25.0% |
| !! | TGTGGATTACAAAAAAATAG+CGG | - | chr7_1:60214909-60214928 | None:intergenic | 25.0% |
| ! | TAATCATTGCTGCAAAATAA+TGG | - | chr7_1:60214997-60215016 | None:intergenic | 25.0% |
| ! | AAATCTGAATTACTGAAAGT+TGG | + | chr7_1:60215512-60215531 | Msa1027700:intron | 25.0% |
| ! | TAGCATATAAGAAAAACAGT+TGG | + | chr7_1:60215731-60215750 | Msa1027700:intron | 25.0% |
| ! | AGCATATAAGAAAAACAGTT+GGG | + | chr7_1:60215732-60215751 | Msa1027700:intron | 25.0% |
| !! | GAAAAACATGAAATCTGTTT+TGG | - | chr7_1:60215828-60215847 | None:intergenic | 25.0% |
| !! | AGATTTCATGTTTTTCTTCT+TGG | + | chr7_1:60215832-60215851 | Msa1027700:intron | 25.0% |
| !! | ATAAGAATTTTTAATGTGGC+AGG | - | chr7_1:60215895-60215914 | None:intergenic | 25.0% |
| !! | TGTATTAGTATTTGAAGCAA+TGG | + | chr7_1:60216149-60216168 | Msa1027700:CDS | 25.0% |
| ! | TTGTGATGATAAATTTACCA+TGG | - | chr7_1:60216238-60216257 | None:intergenic | 25.0% |
| ! | GTATGTGACTTATTAATGTT+AGG | - | chr7_1:60216305-60216324 | None:intergenic | 25.0% |
| GAATTTGTGTGTACTTACAA+TGG | - | chr7_1:60213364-60213383 | None:intergenic | 30.0% | |
| GCTTGCTTAGACTAATAAAA+AGG | + | chr7_1:60213436-60213455 | Msa1027700:five_prime_UTR | 30.0% | |
| ! | AAGAAGAAGAATTGTTTTCG+TGG | - | chr7_1:60213474-60213493 | None:intergenic | 30.0% |
| !! | TACTGAATTGAATTTTGGGT+TGG | + | chr7_1:60213577-60213596 | Msa1027700:five_prime_UTR | 30.0% |
| !!! | ATTTTGGGTTGGTTTCAAAT+TGG | + | chr7_1:60213588-60213607 | Msa1027700:five_prime_UTR | 30.0% |
| AAAGATGAAGAAAGAAGAAC+AGG | + | chr7_1:60213624-60213643 | Msa1027700:exon | 30.0% | |
| AAGATGAAGAAAGAAGAACA+GGG | + | chr7_1:60213625-60213644 | Msa1027700:exon | 30.0% | |
| TTCTTTGGATATCTTGTCAA+TGG | + | chr7_1:60213721-60213740 | Msa1027700:CDS | 30.0% | |
| !!! | GGATTTAATCCTCTAGTTTT+CGG | + | chr7_1:60214041-60214060 | Msa1027700:intron | 30.0% |
| !!! | GATTTAATCCTCTAGTTTTC+GGG | + | chr7_1:60214042-60214061 | Msa1027700:intron | 30.0% |
| ! | TCTCATTTGTCTGATTTTTC+AGG | + | chr7_1:60214188-60214207 | Msa1027700:intron | 30.0% |
| TTCAGGAATATGTGTATAAC+AGG | + | chr7_1:60214205-60214224 | Msa1027700:intron | 30.0% | |
| ! | TGTATAACAGGCTTCATTTT+AGG | + | chr7_1:60214217-60214236 | Msa1027700:CDS | 30.0% |
| !!! | TTTTTTTCTTGTCTCAGCTA+TGG | + | chr7_1:60214327-60214346 | Msa1027700:intron | 30.0% |
| TGGTACTTCACATTTATTCA+AGG | + | chr7_1:60214351-60214370 | Msa1027700:CDS | 30.0% | |
| CATTAAGGTAAATCAGAAAC+AGG | - | chr7_1:60214386-60214405 | None:intergenic | 30.0% | |
| !! | CTGTTTCTGATTTACCTTAA+TGG | + | chr7_1:60214384-60214403 | Msa1027700:CDS | 30.0% |
| GATTTAAACATAATCTGTGC+AGG | - | chr7_1:60214519-60214538 | None:intergenic | 30.0% | |
| !!! | CTTTTTTTCAGTTACCTTTG+TGG | - | chr7_1:60214541-60214560 | None:intergenic | 30.0% |
| AAAATGGGTAAAGTAAAGGT+AGG | - | chr7_1:60214587-60214606 | None:intergenic | 30.0% | |
| ATGATGTCAATCTCTAATCA+CGG | + | chr7_1:60214698-60214717 | Msa1027700:intron | 30.0% | |
| TCTGATATAGTACAAAGTGT+TGG | - | chr7_1:60214936-60214955 | None:intergenic | 30.0% | |
| AACACTTTGTACTATATCAG+AGG | + | chr7_1:60214935-60214954 | Msa1027700:intron | 30.0% | |
| CTAAAACATGTCAGCTAATT+TGG | - | chr7_1:60215050-60215069 | None:intergenic | 30.0% | |
| !! | ATGTTTTAGACACTATGTCA+TGG | + | chr7_1:60215061-60215080 | Msa1027700:intron | 30.0% |
| GCAGATATATACTCATGTAT+TGG | - | chr7_1:60215230-60215249 | None:intergenic | 30.0% | |
| GTATATATCTGCAATACTCT+TGG | + | chr7_1:60215238-60215257 | Msa1027700:CDS | 30.0% | |
| ! | TTGGTTATGGATTCTTTTCT+TGG | + | chr7_1:60215347-60215366 | Msa1027700:CDS | 30.0% |
| TTTGAGAGAGCTTATAGAAA+CGG | + | chr7_1:60215637-60215656 | Msa1027700:intron | 30.0% | |
| ! | AATTCTCCTGTAAAAAGCAT+AGG | - | chr7_1:60215992-60216011 | None:intergenic | 30.0% |
| TTCATGTTCACAGGTAAATT+TGG | + | chr7_1:60216027-60216046 | Msa1027700:intron | 30.0% | |
| CAAACTGACATATTGAAATG+AGG | - | chr7_1:60216267-60216286 | None:intergenic | 30.0% | |
| CTCATTTCAATATGTCAGTT+TGG | + | chr7_1:60216265-60216284 | Msa1027700:intron | 30.0% | |
| TATGCAAAAGGTTAAGAGTT+TGG | - | chr7_1:60216372-60216391 | None:intergenic | 30.0% | |
| TTTGGTGAATACTTGATACT+TGG | + | chr7_1:60216428-60216447 | Msa1027700:intron | 30.0% | |
| ! | GAATTGAAAGTTTTTCCCAA+TGG | + | chr7_1:60216454-60216473 | Msa1027700:intron | 30.0% |
| TTTCCCAATGGTAATTTAGT+TGG | + | chr7_1:60216466-60216485 | Msa1027700:intron | 30.0% | |
| TCACCAACTAAATTACCATT+GGG | - | chr7_1:60216472-60216491 | None:intergenic | 30.0% | |
| ATCACCAACTAAATTACCAT+TGG | - | chr7_1:60216473-60216492 | None:intergenic | 30.0% | |
| AAACCATTAACAGAACAACA+TGG | + | chr7_1:60216649-60216668 | Msa1027700:CDS | 30.0% | |
| AACCATTAACAGAACAACAT+GGG | + | chr7_1:60216650-60216669 | Msa1027700:CDS | 30.0% | |
| ! | GTTGGTTTCAAATTGGTGAA+TGG | + | chr7_1:60213595-60213614 | Msa1027700:five_prime_UTR | 35.0% |
| ATGAGAAATTGTTGCCATCT+GGG | - | chr7_1:60213685-60213704 | None:intergenic | 35.0% | |
| AATGAGAAATTGTTGCCATC+TGG | - | chr7_1:60213686-60213705 | None:intergenic | 35.0% | |
| CAATTTCTCATTTGTTCGTC+TGG | + | chr7_1:60213694-60213713 | Msa1027700:CDS | 35.0% | |
| TTGTGTCTTTGTGTGTAGAT+TGG | + | chr7_1:60213888-60213907 | Msa1027700:intron | 35.0% | |
| TGTGTCTTTGTGTGTAGATT+GGG | + | chr7_1:60213889-60213908 | Msa1027700:intron | 35.0% | |
| TTCGGTTAGGAGATAAAAGT+CGG | + | chr7_1:60214088-60214107 | Msa1027700:intron | 35.0% | |
| ! | GCTTCACATAAGTTTTCCAT+GGG | - | chr7_1:60214434-60214453 | None:intergenic | 35.0% |
| ! | AGCTTCACATAAGTTTTCCA+TGG | - | chr7_1:60214435-60214454 | None:intergenic | 35.0% |
| !! | TGAAGGATACTGTTTTGGAT+CGG | + | chr7_1:60214607-60214626 | Msa1027700:intron | 35.0% |
| ! | TCGGTTATGTTTGAAACACA+TGG | + | chr7_1:60214626-60214645 | Msa1027700:intron | 35.0% |
| ! | ATGTTTGAAACACATGGAGA+TGG | + | chr7_1:60214632-60214651 | Msa1027700:intron | 35.0% |
| TCTCTAATCACGGAAAATAG+TGG | + | chr7_1:60214708-60214727 | Msa1027700:intron | 35.0% | |
| ! | GACACAGTGTTGTTAAATAG+CGG | + | chr7_1:60214774-60214793 | Msa1027700:intron | 35.0% |
| ACTATATCAGAGGACAATAG+TGG | + | chr7_1:60214945-60214964 | Msa1027700:intron | 35.0% | |
| GGTTGTAGCATAGCAAAATT+TGG | - | chr7_1:60214976-60214995 | None:intergenic | 35.0% | |
| TCACCTAATTTCAGTGTTGT+TGG | + | chr7_1:60215302-60215321 | Msa1027700:CDS | 35.0% | |
| ACACCAACAACACTGAAATT+AGG | - | chr7_1:60215308-60215327 | None:intergenic | 35.0% | |
| !! | GTTGGTGTTGTTATGATAAC+CGG | + | chr7_1:60215320-60215339 | Msa1027700:CDS | 35.0% |
| TAGAAAATTGATCACCTGTG+TGG | - | chr7_1:60215411-60215430 | None:intergenic | 35.0% | |
| !!! | AAGTTGGTCACTAGTTTTGA+CGG | + | chr7_1:60215528-60215547 | Msa1027700:intron | 35.0% |
| ! | GTTGCTAATTCAACCTTTTC+TGG | + | chr7_1:60215862-60215881 | Msa1027700:intron | 35.0% |
| CAGGAGAATTATTCAAAGCA+TGG | + | chr7_1:60216002-60216021 | Msa1027700:CDS | 35.0% | |
| ACTAATACACCATACACGTA+GGG | - | chr7_1:60216138-60216157 | None:intergenic | 35.0% | |
| TACTAATACACCATACACGT+AGG | - | chr7_1:60216139-60216158 | None:intergenic | 35.0% | |
| GAAGCAATGGCTACATTTAT+AGG | + | chr7_1:60216162-60216181 | Msa1027700:CDS | 35.0% | |
| TAAATTTACCATGGCTGTAG+TGG | - | chr7_1:60216229-60216248 | None:intergenic | 35.0% | |
| TAATGTTAGGTGCAGTACAA+TGG | - | chr7_1:60216292-60216311 | None:intergenic | 35.0% | |
| ACAGATAACAACAGCAAGAA+AGG | + | chr7_1:60216591-60216610 | Msa1027700:intron | 35.0% | |
| TGGACTAATACTCATAGCTA+TGG | + | chr7_1:60216675-60216694 | Msa1027700:CDS | 35.0% | |
| GGACTAATACTCATAGCTAT+GGG | + | chr7_1:60216676-60216695 | Msa1027700:CDS | 35.0% | |
| ! | ATTTAAGGCTCTCTTAGGTA+TGG | - | chr7_1:60216737-60216756 | None:intergenic | 35.0% |
| ! | GAAGTATTTAAGGCTCTCTT+AGG | - | chr7_1:60216742-60216761 | None:intergenic | 35.0% |
| !! | GTCTCTCTGAGAAGTATTTA+AGG | - | chr7_1:60216752-60216771 | None:intergenic | 35.0% |
| ! | TACTACTGTTGATGAAGAGT+TGG | + | chr7_1:60216786-60216805 | Msa1027700:CDS | 35.0% |
| ! | ACTACTGTTGATGAAGAGTT+GGG | + | chr7_1:60216787-60216806 | Msa1027700:CDS | 35.0% |
| TAGGTGAAGAAGATGATGAA+AGG | + | chr7_1:60216827-60216846 | Msa1027700:CDS | 35.0% | |
| TATCATTCAACCTAGACCAA+GGG | - | chr7_1:60216856-60216875 | None:intergenic | 35.0% | |
| TTATCATTCAACCTAGACCA+AGG | - | chr7_1:60216857-60216876 | None:intergenic | 35.0% | |
| TGTTCGTCTGGATTCTTCTT+TGG | + | chr7_1:60213706-60213725 | Msa1027700:CDS | 40.0% | |
| TCTTGTCAATGGTATCTGTG+AGG | + | chr7_1:60213732-60213751 | Msa1027700:CDS | 40.0% | |
| !!! | TCCTCTAGTTTTCGGGAAAA+TGG | + | chr7_1:60214049-60214068 | Msa1027700:intron | 40.0% |
| !! | GGAAAATGGCTCTGATAATC+TGG | + | chr7_1:60214063-60214082 | Msa1027700:intron | 40.0% |
| ! | TGATAATCTGGAGTTCGGTT+AGG | + | chr7_1:60214075-60214094 | Msa1027700:intron | 40.0% |
| TCGGTTAGGAGATAAAAGTC+GGG | + | chr7_1:60214089-60214108 | Msa1027700:intron | 40.0% | |
| TTTCTTGTCTCAGCTATGGT+TGG | + | chr7_1:60214331-60214350 | Msa1027700:intron | 40.0% | |
| GCTTGCTTGTGAAACCATTA+AGG | - | chr7_1:60214401-60214420 | None:intergenic | 40.0% | |
| TGGTTTCACAAGCAAGCAAA+TGG | + | chr7_1:60214404-60214423 | Msa1027700:CDS | 40.0% | |
| AAGCTTTCTGCTGTACTCAT+GGG | + | chr7_1:60214450-60214469 | Msa1027700:CDS | 40.0% | |
| GGATCACATGGCTTAACAAA+GGG | + | chr7_1:60214471-60214490 | Msa1027700:CDS | 40.0% | |
| TGGCTTAACAAAGGGTTCTT+TGG | + | chr7_1:60214479-60214498 | Msa1027700:CDS | 40.0% | |
| !! | GTACAAAGTGTTGGCAATTG+TGG | - | chr7_1:60214927-60214946 | None:intergenic | 40.0% |
| GTTCTGCCAGTGATGATAAT+GGG | + | chr7_1:60215173-60215192 | Msa1027700:CDS | 40.0% | |
| !! | ATAATGGGTGCCTTTATTCC+TGG | + | chr7_1:60215188-60215207 | Msa1027700:CDS | 40.0% |
| TCTTCTCAGACCAGGAATAA+AGG | - | chr7_1:60215201-60215220 | None:intergenic | 40.0% | |
| ! | GGATATTTTCTTCTCAGACC+AGG | - | chr7_1:60215209-60215228 | None:intergenic | 40.0% |
| ! | TCTGCAATACTCTTGGTAGT+TGG | + | chr7_1:60215245-60215264 | Msa1027700:CDS | 40.0% |
| TGTTATGATAACCGGTGCTT+TGG | + | chr7_1:60215328-60215347 | Msa1027700:CDS | 40.0% | |
| AGAATCCATAACCAAAGCAC+CGG | - | chr7_1:60215342-60215361 | None:intergenic | 40.0% | |
| AGCATAGGTGGGATTAAGAA+AGG | - | chr7_1:60215977-60215996 | None:intergenic | 40.0% | |
| !! | ATCCCACCTATGCTTTTTAC+AGG | + | chr7_1:60215983-60216002 | Msa1027700:CDS | 40.0% |
| ! | CTCCTGTAAAAAGCATAGGT+GGG | - | chr7_1:60215988-60216007 | None:intergenic | 40.0% |
| ! | TCTCCTGTAAAAAGCATAGG+TGG | - | chr7_1:60215989-60216008 | None:intergenic | 40.0% |
| AGCACCAAAAAGGGCAATTA+GGG | - | chr7_1:60216205-60216224 | None:intergenic | 40.0% | |
| CTCCCATGTTGTTCTGTTAA+TGG | - | chr7_1:60216655-60216674 | None:intergenic | 40.0% | |
| TTAACAGAACAACATGGGAG+TGG | + | chr7_1:60216655-60216674 | Msa1027700:CDS | 40.0% | |
| GTGAAGAAGATGATGAAAGG+AGG | + | chr7_1:60216830-60216849 | Msa1027700:CDS | 40.0% | |
| !! | GAACAGGGTCGTAGTTTGTT+TGG | + | chr7_1:60213640-60213659 | Msa1027700:CDS | 45.0% |
| !! | GCCATTTTCCCGAAAACTAG+AGG | - | chr7_1:60214053-60214072 | None:intergenic | 45.0% |
| ! | GGCTCTGATAATCTGGAGTT+CGG | + | chr7_1:60214070-60214089 | Msa1027700:intron | 45.0% |
| GAAGCTTTCTGCTGTACTCA+TGG | + | chr7_1:60214449-60214468 | Msa1027700:CDS | 45.0% | |
| GGGATCACATGGCTTAACAA+AGG | + | chr7_1:60214470-60214489 | Msa1027700:CDS | 45.0% | |
| GCTATGACACTGTTGCATAG+CGG | + | chr7_1:60214871-60214890 | Msa1027700:intron | 45.0% | |
| CTCTTCAAACTGCGTCATTC+AGG | + | chr7_1:60215090-60215109 | Msa1027700:intron | 45.0% | |
| GGTTCTGCCAGTGATGATAA+TGG | + | chr7_1:60215172-60215191 | Msa1027700:intron | 45.0% | |
| ! | AAGGCACCCATTATCATCAC+TGG | - | chr7_1:60215182-60215201 | None:intergenic | 45.0% |
| GTGCGTCTGCTAGTGTAAAT+AGG | - | chr7_1:60215277-60215296 | None:intergenic | 45.0% | |
| GATAACCGGTGCTTTGGTTA+TGG | + | chr7_1:60215334-60215353 | Msa1027700:CDS | 45.0% | |
| TATGAACCCTGATACCACAC+AGG | + | chr7_1:60215394-60215413 | Msa1027700:CDS | 45.0% | |
| TGATCACCTGTGTGGTATCA+GGG | - | chr7_1:60215403-60215422 | None:intergenic | 45.0% | |
| TTGATCACCTGTGTGGTATC+AGG | - | chr7_1:60215404-60215423 | None:intergenic | 45.0% | |
| ! | GGGAAAGCACGAAGATGATT+AGG | - | chr7_1:60215440-60215459 | None:intergenic | 45.0% |
| GGCAGGTATACTACCAGAAA+AGG | - | chr7_1:60215878-60215897 | None:intergenic | 45.0% | |
| CTCTTCTGCTCTACAGTAGT+GGG | + | chr7_1:60215947-60215966 | Msa1027700:CDS | 45.0% | |
| AGCATGGACTTCATGTTCAC+AGG | + | chr7_1:60216018-60216037 | Msa1027700:CDS | 45.0% | |
| TTAGGGAGAGGACTGAAACT+TGG | - | chr7_1:60216188-60216207 | None:intergenic | 45.0% | |
| CAAAAAGGGCAATTAGGGAG+AGG | - | chr7_1:60216200-60216219 | None:intergenic | 45.0% | |
| ! | CTCTCCCTAATTGCCCTTTT+TGG | + | chr7_1:60216198-60216217 | Msa1027700:CDS | 45.0% |
| CAGCACCAAAAAGGGCAATT+AGG | - | chr7_1:60216206-60216225 | None:intergenic | 45.0% | |
| TGTAGTGGCAGCACCAAAAA+GGG | - | chr7_1:60216214-60216233 | None:intergenic | 45.0% | |
| !! | GGTATGGCAGGTTTGTTTTC+AGG | - | chr7_1:60216721-60216740 | None:intergenic | 45.0% |
| CTTCTTCACCTACAGAACCA+TGG | - | chr7_1:60216819-60216838 | None:intergenic | 45.0% | |
| CACTCTCTGATAGACCCAGA+TGG | + | chr7_1:60213668-60213687 | Msa1027700:CDS | 50.0% | |
| GCAAGCAAATGGTGAACCCA+TGG | + | chr7_1:60214415-60214434 | Msa1027700:CDS | 50.0% | |
| GCTGTACTCATGGGATCACA+TGG | + | chr7_1:60214459-60214478 | Msa1027700:CDS | 50.0% | |
| GCAGCTAATGCGTTGTAGTG+CGG | - | chr7_1:60214749-60214768 | None:intergenic | 50.0% | |
| GCTCTTCTGCTCTACAGTAG+TGG | + | chr7_1:60215946-60215965 | Msa1027700:CDS | 50.0% | |
| ATACACGTAGGGATGCTGCA+AGG | - | chr7_1:60216127-60216146 | None:intergenic | 50.0% | |
| TTGCAGCATCCCTACGTGTA+TGG | + | chr7_1:60216126-60216145 | Msa1027700:intron | 50.0% | |
| CTGTAGTGGCAGCACCAAAA+AGG | - | chr7_1:60216215-60216234 | None:intergenic | 50.0% | |
| AAGGCTCTCTTAGGTATGGC+AGG | - | chr7_1:60216733-60216752 | None:intergenic | 50.0% | |
| GAAGAGTTGGGAACACTCCA+TGG | + | chr7_1:60216799-60216818 | Msa1027700:CDS | 50.0% | |
| ! | GGAACACTCCATGGTTCTGT+AGG | + | chr7_1:60216808-60216827 | Msa1027700:CDS | 50.0% |
| AGATGATGAAAGGAGGCCCT+TGG | + | chr7_1:60216837-60216856 | Msa1027700:CDS | 50.0% | |
| GCTAATGCGTTGTAGTGCGG+TGG | - | chr7_1:60214746-60214765 | None:intergenic | 55.0% | |
| TGAAAGGAGGCCCTTGGTCT+AGG | + | chr7_1:60216843-60216862 | Msa1027700:CDS | 55.0% | |
| !! | TGGTGCTGCCACTACAGCCA+TGG | + | chr7_1:60216218-60216237 | Msa1027700:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 60213348 | 60217075 | 60213348 | ID=Msa1027700;Name=Msa1027700 |
| chr7_1 | mRNA | 60213348 | 60217075 | 60213348 | ID=Msa1027700-mRNA-1;Parent=Msa1027700;Name=Msa1027700-mRNA-1;_AED=0.05;_eAED=0.05;_QI=280|1|1|1|1|1|7|211|359 |
| chr7_1 | exon | 60213348 | 60213753 | 60213348 | ID=Msa1027700-mRNA-1:exon:12424;Parent=Msa1027700-mRNA-1 |
| chr7_1 | exon | 60214210 | 60214238 | 60214210 | ID=Msa1027700-mRNA-1:exon:12425;Parent=Msa1027700-mRNA-1 |
| chr7_1 | exon | 60214344 | 60214545 | 60214344 | ID=Msa1027700-mRNA-1:exon:12426;Parent=Msa1027700-mRNA-1 |
| chr7_1 | exon | 60215173 | 60215415 | 60215173 | ID=Msa1027700-mRNA-1:exon:12427;Parent=Msa1027700-mRNA-1 |
| chr7_1 | exon | 60215938 | 60216039 | 60215938 | ID=Msa1027700-mRNA-1:exon:12428;Parent=Msa1027700-mRNA-1 |
| chr7_1 | exon | 60216132 | 60216239 | 60216132 | ID=Msa1027700-mRNA-1:exon:12429;Parent=Msa1027700-mRNA-1 |
| chr7_1 | exon | 60216595 | 60217075 | 60216595 | ID=Msa1027700-mRNA-1:exon:12430;Parent=Msa1027700-mRNA-1 |
| chr7_1 | five_prime_UTR | 60213348 | 60213627 | 60213348 | ID=Msa1027700-mRNA-1:five_prime_utr;Parent=Msa1027700-mRNA-1 |
| chr7_1 | CDS | 60213628 | 60213753 | 60213628 | ID=Msa1027700-mRNA-1:cds;Parent=Msa1027700-mRNA-1 |
| chr7_1 | CDS | 60214210 | 60214238 | 60214210 | ID=Msa1027700-mRNA-1:cds;Parent=Msa1027700-mRNA-1 |
| chr7_1 | CDS | 60214344 | 60214545 | 60214344 | ID=Msa1027700-mRNA-1:cds;Parent=Msa1027700-mRNA-1 |
| chr7_1 | CDS | 60215173 | 60215415 | 60215173 | ID=Msa1027700-mRNA-1:cds;Parent=Msa1027700-mRNA-1 |
| chr7_1 | CDS | 60215938 | 60216039 | 60215938 | ID=Msa1027700-mRNA-1:cds;Parent=Msa1027700-mRNA-1 |
| chr7_1 | CDS | 60216132 | 60216239 | 60216132 | ID=Msa1027700-mRNA-1:cds;Parent=Msa1027700-mRNA-1 |
| chr7_1 | CDS | 60216595 | 60216864 | 60216595 | ID=Msa1027700-mRNA-1:cds;Parent=Msa1027700-mRNA-1 |
| chr7_1 | three_prime_UTR | 60216865 | 60217075 | 60216865 | ID=Msa1027700-mRNA-1:three_prime_utr;Parent=Msa1027700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
