AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1269580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1269580 MtrunA17_Chr3g0133221 91.071 280 3 2 1 280 1 258 0.0 512
Msa1269580 MtrunA17_Chr8g0367701 71.667 180 51 0 100 279 90 269 1.90e-98 290
Msa1269580 MtrunA17_Chr7g0251801 47.475 198 94 3 81 277 86 274 4.14e-64 202
Msa1269580 MtrunA17_Chr2g0315771 47.030 202 102 3 82 278 25 226 3.58e-61 193
Msa1269580 MtrunA17_Chr1g0162171 39.623 159 95 1 120 277 62 220 1.34e-43 148
Msa1269580 MtrunA17_Chr6g0481891 38.994 159 96 1 120 277 38 196 2.21e-42 144
Msa1269580 MtrunA17_Chr8g0388871 37.654 162 97 2 119 277 22 182 3.03e-40 138
Msa1269580 MtrunA17_Chr1g0212091 36.413 184 107 3 96 277 43 218 4.02e-40 139
Msa1269580 MtrunA17_Chr1g0212121 35.849 159 101 1 120 277 57 215 5.46e-37 130
Msa1269580 MtrunA17_Chr1g0212171 35.625 160 102 1 119 277 59 218 1.22e-36 130
Msa1269580 MtrunA17_Chr1g0212181 35.583 163 103 2 120 280 57 219 3.61e-35 126
Msa1269580 MtrunA17_Chr1g0212111 43.396 106 59 1 173 277 49 154 3.95e-25 98.6
Msa1269580 MtrunA17_Chr1g0212131 41.071 56 33 0 222 277 6 61 8.15e-12 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1269580 AT1G28200.1 72.951 244 57 2 37 280 23 257 2.00e-123 353
Msa1269580 AT1G28200.2 72.951 244 57 2 37 280 23 257 2.00e-123 353
Msa1269580 AT2G22475.1 72.727 198 53 1 83 279 96 293 5.20e-110 320
Msa1269580 AT2G22475.2 72.603 146 39 1 83 227 96 241 9.06e-77 234
Msa1269580 AT4G40100.1 57.789 199 47 4 83 279 55 218 4.90e-73 223
Msa1269580 AT5G13200.1 47.644 191 91 3 84 273 74 256 4.94e-59 189
Msa1269580 AT4G01600.1 42.211 199 108 3 83 277 29 224 1.04e-54 177
Msa1269580 AT4G01600.3 42.135 178 101 1 102 277 8 185 8.12e-52 168
Msa1269580 AT4G01600.2 41.206 199 105 4 83 277 29 219 1.08e-50 166
Msa1269580 AT5G23350.1 34.259 216 133 4 67 277 2 213 6.38e-40 138
Msa1269580 AT5G23360.1 36.875 160 98 2 120 277 47 205 1.13e-38 135
Msa1269580 AT5G23370.1 33.333 219 131 6 67 277 2 213 3.77e-38 134
Msa1269580 AT5G08350.1 33.831 201 116 4 79 277 27 212 4.56e-38 134
Msa1269580 AT5G13200.2 46.479 142 67 3 84 224 74 207 2.36e-37 132

Find 108 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCGTTGTTACTTGTTTC+TGG 0.126004 8_3:+2801294 Msa1269580:three_prime_UTR
CCGTTGACAATCATGAATTT+TGG 0.145817 8_3:+2801051 Msa1269580:CDS
AAATAATAATTTGACGGTTT+TGG 0.155065 8_3:+2796982 Msa1269580:five_prime_UTR
TGAAAGATGTTCTTGGAAAA+TGG 0.239709 8_3:+2797569 Msa1269580:CDS
GAATCAGAGTGTTGGGGTTT+GGG 0.276522 8_3:-2797261 None:intergenic
AGCAAGATCTTCAGCCTTCT+TGG 0.287689 8_3:-2797614 None:intergenic
TTGTGTTGGTGGGTTGGACT+TGG 0.298593 8_3:-2797218 None:intergenic
AGAATCAGAGTGTTGGGGTT+TGG 0.300088 8_3:-2797262 None:intergenic
ACGTCGTTTGGGTCGAGTTT+AGG 0.310396 8_3:-2797315 None:intergenic
TTTAGGATACGGAGCGTAAT+CGG 0.313258 8_3:-2797298 None:intergenic
GGTGGTGGTGCGACGTCGTT+TGG 0.326020 8_3:-2797327 None:intergenic
AAATGTCAATCAGTGCCTTC+AGG 0.326175 8_3:+2796839 Msa1269580:five_prime_UTR
ATATTATTACATTCTAAATC+TGG 0.330201 8_3:+2801344 Msa1269580:three_prime_UTR
TCAATTCAAACCCAAGTTGA+TGG 0.340780 8_3:-2797092 None:intergenic
ATTTAAACATGATAGTTATA+TGG 0.356108 8_3:+2801397 Msa1269580:three_prime_UTR
GATTCGGTGAAAGATGTTCT+TGG 0.357881 8_3:+2797562 Msa1269580:CDS
TGCTACCTCTCCACCTCTGC+TGG 0.362383 8_3:+2798679 Msa1269580:CDS
CTCTTAGCAGAAGTGGGTTC+GGG 0.375941 8_3:-2797441 None:intergenic
GACTCAATGGAGCTATTATA+AGG 0.381490 8_3:+2798786 Msa1269580:CDS
GCAGAAGTGGGTTCGGGAAC+TGG 0.387440 8_3:-2797435 None:intergenic
TTAGGATACGGAGCGTAATC+GGG 0.390438 8_3:-2797297 None:intergenic
TACTTCCTTAGTCTAGTTTG+TGG 0.390817 8_3:+2801244 Msa1269580:three_prime_UTR
GGGTTGGCTTTGCTTGTGGA+TGG 0.392668 8_3:-2801002 None:intergenic
AGAGTGTTGGGGTTTGGGAT+TGG 0.396714 8_3:-2797256 None:intergenic
CACCTCTGCTGGACCTGTCA+TGG 0.396719 8_3:+2798690 Msa1269580:CDS
GAAAGATGTTCTTGGAAAAT+GGG 0.402168 8_3:+2797570 Msa1269580:CDS
TGCTCAGGGAACAAAAGTTC+TGG 0.404565 8_3:+2798579 Msa1269580:CDS
ATCAACACAGACCTCATGTT+TGG 0.406142 8_3:-2801173 None:intergenic
ACTCTTAGCAGAAGTGGGTT+CGG 0.407099 8_3:-2797442 None:intergenic
GCAACAGGTGGTGGTGGTGG+TGG 0.410841 8_3:-2797342 None:intergenic
TACTACTCATATTGTTGACT+TGG 0.419934 8_3:-2797155 None:intergenic
TTGTGTTTGTGTTGGTGGGT+TGG 0.423984 8_3:-2797224 None:intergenic
ATTGAGTCTGGTCACCAGTC+TGG 0.437061 8_3:-2798771 None:intergenic
GTGTTTGTGTTTGTGTTGGT+GGG 0.438866 8_3:-2797228 None:intergenic
AAGAAGGCTGAAGATCTTGC+TGG 0.439141 8_3:+2797616 Msa1269580:CDS
GGTTGGCTTTGCTTGTGGAT+GGG 0.441303 8_3:-2801001 None:intergenic
TTCCATAAAACAGTGAAAAC+AGG 0.443896 8_3:+2798523 Msa1269580:intron
TGTGTTTGTGTTTGTGTTGG+TGG 0.453606 8_3:-2797229 None:intergenic
TGCTGTGGGAAGAATTGCTC+AGG 0.454151 8_3:+2798564 Msa1269580:CDS
AGAGTGAGAATCAGAGTGTT+GGG 0.455084 8_3:-2797268 None:intergenic
GGGCATGGTGGTGGCAGCAT+CGG 0.455840 8_3:-2797382 None:intergenic
AGTTCAAAATAATAATTTGA+CGG 0.461591 8_3:+2796976 Msa1269580:five_prime_UTR
TGTGTTGGTGGGTTGGACTT+GGG 0.461657 8_3:-2797217 None:intergenic
TTCAGAGAAAACCATCAACT+TGG 0.467782 8_3:+2797081 Msa1269580:five_prime_UTR
TATAATAGCTCCATTGAGTC+TGG 0.472016 8_3:-2798783 None:intergenic
GTGGGTTCGGGAACTGGTGC+AGG 0.472656 8_3:-2797429 None:intergenic
TGGACTTGGGCTTGAACATG+AGG 0.476251 8_3:-2797204 None:intergenic
GTTTGTGTTTGTGTTTGTGT+TGG 0.477634 8_3:-2797232 None:intergenic
GTAGCAACAGGTGGTGGTGG+TGG 0.480688 8_3:-2797345 None:intergenic
ACTACTCATATTGTTGACTT+GGG 0.480812 8_3:-2797154 None:intergenic
GGGATTAGATTCGGCGGGCA+TGG 0.481538 8_3:-2797397 None:intergenic
ACCTCTGCTGGACCTGTCAT+GGG 0.481952 8_3:+2798691 Msa1269580:CDS
GCAGTCTCGCTGATACACTA+TGG 0.482340 8_3:+2801127 Msa1269580:exon
TCGATCGATTTGTTGTAAGT+TGG 0.489993 8_3:+2801370 Msa1269580:three_prime_UTR
AGATTCGGCGGGCATGGTGG+TGG 0.492264 8_3:-2797391 None:intergenic
CATGGTGGTGGCAGCATCGG+TGG 0.493757 8_3:-2797379 None:intergenic
GCGCGAGATTCAGTAGCAAC+AGG 0.494862 8_3:-2797357 None:intergenic
AGTAGGGTTGGCTTTGCTTG+TGG 0.497012 8_3:-2801006 None:intergenic
GTGGTGGTGCGACGTCGTTT+GGG 0.498600 8_3:-2797326 None:intergenic
ATTGTTGACTTGGGGAGGAT+CGG 0.507858 8_3:-2797145 None:intergenic
AACTGGTGCAGGAGAGACAT+AGG 0.514578 8_3:-2797418 None:intergenic
AATGTCAATCAGTGCCTTCA+GGG 0.516355 8_3:+2796840 Msa1269580:five_prime_UTR
TAGCTCCACAAACTAGACTA+AGG 0.517632 8_3:-2801249 None:intergenic
TCAGTAGCAACAGGTGGTGG+TGG 0.526626 8_3:-2797348 None:intergenic
GAAATTACTCTTAGCAGAAG+TGG 0.529017 8_3:-2797448 None:intergenic
GAAAGATCGTTGAATTGAAG+AGG 0.529234 8_3:+2796948 Msa1269580:five_prime_UTR
GATTCAGTAGCAACAGGTGG+TGG 0.532264 8_3:-2797351 None:intergenic
AGACTGGTGACCAGACTCAA+TGG 0.534492 8_3:+2798773 Msa1269580:CDS
AAATTACTCTTAGCAGAAGT+GGG 0.535463 8_3:-2797447 None:intergenic
AGAGACATAGGGATTAGATT+CGG 0.541864 8_3:-2797406 None:intergenic
TTTGGGTCGAGTTTAGGATA+CGG 0.542371 8_3:-2797309 None:intergenic
TAGCCTAACCTCTGCCCTGA+AGG 0.542482 8_3:-2796854 None:intergenic
CATGACAGGTCCAGCAGAGG+TGG 0.545232 8_3:-2798689 None:intergenic
CTCATATTGTTGACTTGGGG+AGG 0.551649 8_3:-2797150 None:intergenic
ACTGCTCGCAGCTGATGCAA+TGG 0.553859 8_3:-2800975 None:intergenic
TCACCAGTCTGGTAAGAAAG+TGG 0.556592 8_3:-2798760 None:intergenic
GAGAGTGAGAATCAGAGTGT+TGG 0.556618 8_3:-2797269 None:intergenic
TGAACATGAGGTTGAACTTG+AGG 0.558806 8_3:-2797192 None:intergenic
AACCCACTTTCTTACCAGAC+TGG 0.563921 8_3:+2798757 Msa1269580:CDS
GTCAACAATATGAGTAGTAG+TGG 0.564010 8_3:+2797159 Msa1269580:exon
TCAGAGAAAACCATCAACTT+GGG 0.565702 8_3:+2797082 Msa1269580:five_prime_UTR
CCAAAATTCATGATTGTCAA+CGG 0.566250 8_3:-2801051 None:intergenic
GAGTGAGAATCAGAGTGTTG+GGG 0.569409 8_3:-2797267 None:intergenic
ACATAGGGATTAGATTCGGC+GGG 0.570583 8_3:-2797402 None:intergenic
TAGGATACGGAGCGTAATCG+GGG 0.571711 8_3:-2797296 None:intergenic
AATCAGTGCCTTCAGGGCAG+AGG 0.572910 8_3:+2796846 Msa1269580:five_prime_UTR
GTGCCTTCAGGGCAGAGGTT+AGG 0.573375 8_3:+2796851 Msa1269580:five_prime_UTR
ACAGCAGCATCAGCAAAACT+AGG 0.577655 8_3:-2798547 None:intergenic
AAATACAAGACTCCCATGAC+AGG 0.580237 8_3:-2798703 None:intergenic
GACATAGGGATTAGATTCGG+CGG 0.580305 8_3:-2797403 None:intergenic
CAGGTCCAGCAGAGGTGGAG+AGG 0.582547 8_3:-2798684 None:intergenic
ATTAGATTCGGCGGGCATGG+TGG 0.585883 8_3:-2797394 None:intergenic
TTCTCTGAAACGTGAATACG+TGG 0.591351 8_3:-2797067 None:intergenic
AGCTGCTGAAGCTACCAAGA+AGG 0.592291 8_3:+2797600 Msa1269580:CDS
AAAGATGTTCTTGGAAAATG+GGG 0.592681 8_3:+2797571 Msa1269580:CDS
CACCAGTCTGGTAAGAAAGT+GGG 0.607437 8_3:-2798759 None:intergenic
CTACTCATATTGTTGACTTG+GGG 0.609204 8_3:-2797153 None:intergenic
GGAACAAAAGTTCTGGCAGA+AGG 0.613260 8_3:+2798586 Msa1269580:CDS
TTCAGGGCAGAGGTTAGGCT+AGG 0.620632 8_3:+2796856 Msa1269580:five_prime_UTR
ACTGGTGCAGGAGAGACATA+GGG 0.634538 8_3:-2797417 None:intergenic
TCCCATGACAGGTCCAGCAG+AGG 0.644056 8_3:-2798692 None:intergenic
ACAAAAGTTCTGGCAGAAGG+TGG 0.648034 8_3:+2798589 Msa1269580:CDS
AAGATCTTGCTGGAAACATG+TGG 0.657196 8_3:+2797626 Msa1269580:CDS
ACATGAGGTTGAACTTGAGG+AGG 0.662022 8_3:-2797189 None:intergenic
AGGATACGGAGCGTAATCGG+GGG 0.674476 8_3:-2797295 None:intergenic
CGAGATTCAGTAGCAACAGG+TGG 0.675679 8_3:-2797354 None:intergenic
CATGTAGTATACCAAACATG+AGG 0.682970 8_3:+2801162 Msa1269580:three_prime_UTR
GCTGTGGGAAGAATTGCTCA+GGG 0.687709 8_3:+2798565 Msa1269580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTAAATTA+AGG - chr8_3:2796886-2796905 None:intergenic 0.0%
!!! ATTTTAATTAATTTTATAGC+TGG + chr8_3:2798432-2798451 Msa1269580:intron 10.0%
!! AAAAAAAGTTAAAAAAGCAA+CGG + chr8_3:2796916-2796935 Msa1269580:five_prime_UTR 15.0%
!! AGTTCAAAATAATAATTTGA+CGG + chr8_3:2796976-2796995 Msa1269580:five_prime_UTR 15.0%
!! CTTAAATGAATTTCAATAAT+TGG - chr8_3:2797690-2797709 None:intergenic 15.0%
!!! TATTCATAAAATTTTGCTAT+AGG - chr8_3:2798971-2798990 None:intergenic 15.0%
!!! TTTAATTAACATGAGATTTT+TGG + chr8_3:2799145-2799164 Msa1269580:intron 15.0%
!!! TACATGTTTATTTTTTTTGA+AGG + chr8_3:2799456-2799475 Msa1269580:intron 15.0%
!! ACAAAAGGTTATAAAATTTA+GGG - chr8_3:2799857-2799876 None:intergenic 15.0%
!! AACAAAAGGTTATAAAATTT+AGG - chr8_3:2799858-2799877 None:intergenic 15.0%
!! AACAAAGGTTATAAAATTTA+GGG - chr8_3:2800468-2800487 None:intergenic 15.0%
!! AATGTAATCTATTAATCATA+CGG - chr8_3:2800778-2800797 None:intergenic 15.0%
!! ATATTATTACATTCTAAATC+TGG + chr8_3:2801344-2801363 Msa1269580:three_prime_UTR 15.0%
!! ATTTAAACATGATAGTTATA+TGG + chr8_3:2801397-2801416 Msa1269580:three_prime_UTR 15.0%
!!! AAATAATAATTTGACGGTTT+TGG + chr8_3:2796982-2797001 Msa1269580:five_prime_UTR 20.0%
!!! AATAATAATTTGACGGTTTT+GGG + chr8_3:2796983-2797002 Msa1269580:five_prime_UTR 20.0%
!!! CATTTTGATATTTGAATTCA+AGG + chr8_3:2797038-2797057 Msa1269580:five_prime_UTR 20.0%
!! TAATTGGAAGTAAAAGAATT+AGG - chr8_3:2797674-2797693 None:intergenic 20.0%
!! GCTATTCAATAAATATTTCT+TGG + chr8_3:2797709-2797728 Msa1269580:intron 20.0%
!! AATTAGAATAGATTGAATGA+AGG + chr8_3:2798187-2798206 Msa1269580:intron 20.0%
!! ATTAGAATAGATTGAATGAA+GGG + chr8_3:2798188-2798207 Msa1269580:intron 20.0%
!!! TAATCTCTACACTTTTTTAA+TGG - chr8_3:2798267-2798286 None:intergenic 20.0%
!!! ATTAATTTTATAGCTGGAAA+TGG + chr8_3:2798438-2798457 Msa1269580:intron 20.0%
!! TTGTTCTTTAATAACTGATT+TGG + chr8_3:2798843-2798862 Msa1269580:intron 20.0%
!! TAATCATCCAAAATAATTTC+AGG - chr8_3:2799190-2799209 None:intergenic 20.0%
!!! ATAGATTTTAGATGTATCTA+GGG + chr8_3:2799399-2799418 Msa1269580:intron 20.0%
!! TAATTCCTCGAAAAAAATAT+TGG - chr8_3:2799438-2799457 None:intergenic 20.0%
!! ATCTGATTATAACATTTGTT+TGG + chr8_3:2799703-2799722 Msa1269580:intron 20.0%
!! TCTGATTATAACATTTGTTT+GGG + chr8_3:2799704-2799723 Msa1269580:intron 20.0%
!!! TACTTTTAATCACAACAAAA+AGG - chr8_3:2800096-2800115 None:intergenic 20.0%
!! CAAGCAATTTATATTAAGAT+TGG + chr8_3:2800163-2800182 Msa1269580:intron 20.0%
!! AGATATATTGTATTGAGAAA+TGG + chr8_3:2800320-2800339 Msa1269580:intron 20.0%
!! CAACAAAGGTTATAAAATTT+AGG - chr8_3:2800469-2800488 None:intergenic 20.0%
!! TTGAGAATAAATGTTATCTT+TGG + chr8_3:2800803-2800822 Msa1269580:intron 20.0%
!!! GTCATATTTTTTCTATTGTT+TGG + chr8_3:2800906-2800925 Msa1269580:intron 20.0%
!!! TCTGTATAAATTTTTCAGTA+GGG - chr8_3:2801025-2801044 None:intergenic 20.0%
!!! ATCTGTATAAATTTTTCAGT+AGG - chr8_3:2801026-2801045 None:intergenic 20.0%
!!! AATCATGAATTTTGGTTTAT+GGG + chr8_3:2801059-2801078 Msa1269580:CDS 20.0%
!! TAAAGTATCTGCAAAATCAA+AGG - chr8_3:2797542-2797561 None:intergenic 25.0%
!! TTTTGCAGATACTTTAGATT+CGG + chr8_3:2797546-2797565 Msa1269580:intron 25.0%
!! ATTTTTACTTTGTATGTGCA+TGG + chr8_3:2797801-2797820 Msa1269580:intron 25.0%
!!! CACTTATTTTATTCTAGTGT+TGG - chr8_3:2798006-2798025 None:intergenic 25.0%
! CTAATTACGACAAAATTTAG+AGG - chr8_3:2798173-2798192 None:intergenic 25.0%
! TCAGTTATTAAAGAACAAAG+CGG - chr8_3:2798841-2798860 None:intergenic 25.0%
!! TGATTATTTCTCAATACTAG+AGG + chr8_3:2798905-2798924 Msa1269580:intron 25.0%
! ATTAAAAAATCCTCAAATGC+TGG - chr8_3:2799131-2799150 None:intergenic 25.0%
! AAGTAATACGTATCATTGTT+TGG + chr8_3:2799224-2799243 Msa1269580:intron 25.0%
!! CATCTAAAATCTATGAGTAT+TGG - chr8_3:2799393-2799412 None:intergenic 25.0%
!! CATAGATTTTAGATGTATCT+AGG + chr8_3:2799398-2799417 Msa1269580:intron 25.0%
!!! TTTTTTTGAAGGATTTTTCG+AGG + chr8_3:2799467-2799486 Msa1269580:intron 25.0%
!!! GAACAAGTAGCTATTTTTTT+TGG - chr8_3:2799587-2799606 None:intergenic 25.0%
! CTGATTATAACATTTGTTTG+GGG + chr8_3:2799705-2799724 Msa1269580:intron 25.0%
! TGATTATAACATTTGTTTGG+GGG + chr8_3:2799706-2799725 Msa1269580:intron 25.0%
! ACTTTAAACCAAACCAATAT+CGG - chr8_3:2799950-2799969 None:intergenic 25.0%
!! ACATAATTCTTTTGATGTTG+AGG + chr8_3:2800644-2800663 Msa1269580:intron 25.0%
!! CATAATTCTTTTGATGTTGA+GGG + chr8_3:2800645-2800664 Msa1269580:intron 25.0%
! GAATAAATGTTATCTTTGGA+TGG + chr8_3:2800807-2800826 Msa1269580:intron 25.0%
!!! TATAAATTTTTCAGTAGGGT+TGG - chr8_3:2801021-2801040 None:intergenic 25.0%
!!! CAATCATGAATTTTGGTTTA+TGG + chr8_3:2801058-2801077 Msa1269580:CDS 25.0%
!!! TTTCATGTTTTTGTGAATTG+AGG - chr8_3:2801206-2801225 None:intergenic 25.0%
!! ACTACTCATATTGTTGACTT+GGG - chr8_3:2797157-2797176 None:intergenic 30.0%
! TACTACTCATATTGTTGACT+TGG - chr8_3:2797158-2797177 None:intergenic 30.0%
AAATTACTCTTAGCAGAAGT+GGG - chr8_3:2797450-2797469 None:intergenic 30.0%
TATCTGCAAAATCAAAGGAT+AGG - chr8_3:2797537-2797556 None:intergenic 30.0%
TGAAAGATGTTCTTGGAAAA+TGG + chr8_3:2797569-2797588 Msa1269580:CDS 30.0%
GAAAGATGTTCTTGGAAAAT+GGG + chr8_3:2797570-2797589 Msa1269580:CDS 30.0%
AAAGATGTTCTTGGAAAATG+GGG + chr8_3:2797571-2797590 Msa1269580:CDS 30.0%
TAGAAAAATAGAGAGAGTTG+AGG + chr8_3:2798075-2798094 Msa1269580:intron 30.0%
CAGAAAATATGCTAGAAACT+AGG + chr8_3:2798110-2798129 Msa1269580:intron 30.0%
AAGTGTAGAGATTAATGAGT+TGG + chr8_3:2798273-2798292 Msa1269580:intron 30.0%
! AGAGATTAATGAGTTGGATA+AGG + chr8_3:2798279-2798298 Msa1269580:intron 30.0%
! AAGCTTTATCCAATTAAGTG+GGG - chr8_3:2798353-2798372 None:intergenic 30.0%
! CAAGCTTTATCCAATTAAGT+GGG - chr8_3:2798354-2798373 None:intergenic 30.0%
AGAAAACACAGAAAGTAAAC+TGG + chr8_3:2798465-2798484 Msa1269580:intron 30.0%
GTCAAAATAGCTCAAATGAA+TGG - chr8_3:2798502-2798521 None:intergenic 30.0%
TTCCATAAAACAGTGAAAAC+AGG + chr8_3:2798523-2798542 Msa1269580:intron 30.0%
GTAATGCAGTATACATATCA+TGG - chr8_3:2798871-2798890 None:intergenic 30.0%
AATGACTCCAACTAAATTTC+CGG - chr8_3:2799026-2799045 None:intergenic 30.0%
! ATTGATATTTGAGGTTCCAA+GGG - chr8_3:2799081-2799100 None:intergenic 30.0%
ACTGACATGATTGATATTTG+AGG - chr8_3:2799090-2799109 None:intergenic 30.0%
!!! GATTTTTGGAATTCGAAGAA+AGG + chr8_3:2799159-2799178 Msa1269580:intron 30.0%
!! TATTTTGGATGATTACCCTT+AGG + chr8_3:2799195-2799214 Msa1269580:intron 30.0%
! ATTTTGGATGATTACCCTTA+GGG + chr8_3:2799196-2799215 Msa1269580:intron 30.0%
GTATTACTTAAGATCCCTAA+GGG - chr8_3:2799213-2799232 None:intergenic 30.0%
! AAATCAAGGATTCCCTTTTA+CGG + chr8_3:2799281-2799300 Msa1269580:intron 30.0%
! TCCAAATTTGAAGTATGAGT+GGG + chr8_3:2799336-2799355 Msa1269580:intron 30.0%
TATTGGACATGTACTAGTAT+CGG - chr8_3:2799376-2799395 None:intergenic 30.0%
! ATTTTAGATGTATCTAGGGA+AGG + chr8_3:2799403-2799422 Msa1269580:intron 30.0%
! TTTTAGATGTATCTAGGGAA+GGG + chr8_3:2799404-2799423 Msa1269580:intron 30.0%
!!! ATGCTCCAATATTTTTTTCG+AGG + chr8_3:2799430-2799449 Msa1269580:intron 30.0%
! TTGGAGTAGTGTTTAAAATG+TGG - chr8_3:2799505-2799524 None:intergenic 30.0%
AAACACTACTCCAATACAAT+TGG + chr8_3:2799511-2799530 Msa1269580:intron 30.0%
AACACTACTCCAATACAATT+GGG + chr8_3:2799512-2799531 Msa1269580:intron 30.0%
ATGATGTATCCCAATTGTAT+TGG - chr8_3:2799524-2799543 None:intergenic 30.0%
! TTGTTCAACCTTTTTCTTCA+TGG + chr8_3:2799601-2799620 Msa1269580:intron 30.0%
GATTATAACATTTGTTTGGG+GGG + chr8_3:2799707-2799726 Msa1269580:intron 30.0%
ATTATAACATTTGTTTGGGG+GGG + chr8_3:2799708-2799727 Msa1269580:intron 30.0%
! TAACGTAAACCTACTACTTT+TGG + chr8_3:2799778-2799797 Msa1269580:intron 30.0%
TTAAGGAAACCAAAAGTAGT+AGG - chr8_3:2799790-2799809 None:intergenic 30.0%
! AACCTTTTGTTGATGTAACT+AGG + chr8_3:2799867-2799886 Msa1269580:intron 30.0%
AAGGAACTCTTAAAAACTCA+GGG - chr8_3:2799910-2799929 None:intergenic 30.0%
TAAGGAACTCTTAAAAACTC+AGG - chr8_3:2799911-2799930 None:intergenic 30.0%
TTTAAACCAAACCAATATCG+GGG - chr8_3:2799948-2799967 None:intergenic 30.0%
CTTTAAACCAAACCAATATC+GGG - chr8_3:2799949-2799968 None:intergenic 30.0%
! CATAATTCTTTTGATGTCGA+GGG + chr8_3:2800001-2800020 Msa1269580:intron 30.0%
TATTGAGAAATGGTAAAACG+TGG + chr8_3:2800330-2800349 Msa1269580:intron 30.0%
TTAAGGAAACCAAAAGTAGT+AGG - chr8_3:2799790-2799809 None:intergenic 30.0%
TAACCTTTGTTGATGTAACT+AGG + chr8_3:2800477-2800496 Msa1269580:intron 30.0%
CATATATGTTTCCCCAATAT+TGG + chr8_3:2800578-2800597 Msa1269580:intron 30.0%
TTTGAACCAAACCAATATTG+GGG - chr8_3:2800592-2800611 None:intergenic 30.0%
CTTTGAACCAAACCAATATT+GGG - chr8_3:2800593-2800612 None:intergenic 30.0%
ACTTTGAACCAAACCAATAT+TGG - chr8_3:2800594-2800613 None:intergenic 30.0%
CATCAAAAGAATTATGTGTC+TGG - chr8_3:2800641-2800660 None:intergenic 30.0%
!! TTTTGATGTTGAGGGTATAA+AGG + chr8_3:2800653-2800672 Msa1269580:intron 30.0%
AGGATACAATGAGTAAGAAT+GGG - chr8_3:2800724-2800743 None:intergenic 30.0%
GATTAGTGACTACACTTATA+TGG + chr8_3:2800831-2800850 Msa1269580:intron 30.0%
! AGCTTTTCATCTTATGCATT+AGG + chr8_3:2800944-2800963 Msa1269580:intron 30.0%
! TTTTCATCTTATGCATTAGG+TGG + chr8_3:2800947-2800966 Msa1269580:intron 30.0%
CCAAAATTCATGATTGTCAA+CGG - chr8_3:2801054-2801073 None:intergenic 30.0%
!!! GAGCTATTTTAGTATTGTGA+TGG + chr8_3:2801266-2801285 Msa1269580:three_prime_UTR 30.0%
GAAAGATCGTTGAATTGAAG+AGG + chr8_3:2796948-2796967 Msa1269580:five_prime_UTR 35.0%
TTCAGAGAAAACCATCAACT+TGG + chr8_3:2797081-2797100 Msa1269580:five_prime_UTR 35.0%
TCAGAGAAAACCATCAACTT+GGG + chr8_3:2797082-2797101 Msa1269580:five_prime_UTR 35.0%
! TCAATTCAAACCCAAGTTGA+TGG - chr8_3:2797095-2797114 None:intergenic 35.0%
!! CTACTCATATTGTTGACTTG+GGG - chr8_3:2797156-2797175 None:intergenic 35.0%
GTCAACAATATGAGTAGTAG+TGG + chr8_3:2797159-2797178 Msa1269580:exon 35.0%
GTTTGTGTTTGTGTTTGTGT+TGG - chr8_3:2797235-2797254 None:intergenic 35.0%
AGAGACATAGGGATTAGATT+CGG - chr8_3:2797409-2797428 None:intergenic 35.0%
GAAATTACTCTTAGCAGAAG+TGG - chr8_3:2797451-2797470 None:intergenic 35.0%
TTGTGATCAAGAGAAGATAG+AGG + chr8_3:2797856-2797875 Msa1269580:intron 35.0%
!! TTGTATGTGAAGGAAGTGTT+GGG + chr8_3:2797970-2797989 Msa1269580:intron 35.0%
AAATAAGTGTAGCAGAGATG+AGG + chr8_3:2798017-2798036 Msa1269580:intron 35.0%
ATATGCTAGAAACTAGGCTT+AGG + chr8_3:2798116-2798135 Msa1269580:intron 35.0%
TTTATCCAATTAAGTGGGGT+AGG - chr8_3:2798349-2798368 None:intergenic 35.0%
! CCAAGCTTTATCCAATTAAG+TGG - chr8_3:2798355-2798374 None:intergenic 35.0%
CCACTTAATTGGATAAAGCT+TGG + chr8_3:2798352-2798371 Msa1269580:intron 35.0%
! GACCTGTTTTCACTGTTTTA+TGG - chr8_3:2798528-2798547 None:intergenic 35.0%
!!! GTTTTAAGAAGTTGTTCCTC+TGG - chr8_3:2798652-2798671 None:intergenic 35.0%
TATAATAGCTCCATTGAGTC+TGG - chr8_3:2798786-2798805 None:intergenic 35.0%
GACTCAATGGAGCTATTATA+AGG + chr8_3:2798786-2798805 Msa1269580:CDS 35.0%
AAATTTCCGGGACACAAATT+GGG - chr8_3:2799013-2799032 None:intergenic 35.0%
TAAATTTCCGGGACACAAAT+TGG - chr8_3:2799014-2799033 None:intergenic 35.0%
ATGACTCCAACTAAATTTCC+GGG - chr8_3:2799025-2799044 None:intergenic 35.0%
! GATTGATATTTGAGGTTCCA+AGG - chr8_3:2799082-2799101 None:intergenic 35.0%
ACTAATATCACCAGCATTTG+AGG + chr8_3:2799118-2799137 Msa1269580:intron 35.0%
! GGTGCTTCCTGAAATTATTT+TGG + chr8_3:2799180-2799199 Msa1269580:intron 35.0%
CGTATTACTTAAGATCCCTA+AGG - chr8_3:2799214-2799233 None:intergenic 35.0%
AAGGCAACATAACTGAACAT+GGG - chr8_3:2799256-2799275 None:intergenic 35.0%
AAAGGCAACATAACTGAACA+TGG - chr8_3:2799257-2799276 None:intergenic 35.0%
TGTTGCCTTTCTTGAAATCA+AGG + chr8_3:2799267-2799286 Msa1269580:intron 35.0%
GGAATCCTTGATTTCAAGAA+AGG - chr8_3:2799275-2799294 None:intergenic 35.0%
! ACTTCAAATTTGGAGTACCT+GGG - chr8_3:2799330-2799349 None:intergenic 35.0%
! TACTTCAAATTTGGAGTACC+TGG - chr8_3:2799331-2799350 None:intergenic 35.0%
! CTCCAAATTTGAAGTATGAG+TGG + chr8_3:2799335-2799354 Msa1269580:intron 35.0%
ACCCACTCATACTTCAAATT+TGG - chr8_3:2799340-2799359 None:intergenic 35.0%
! ACATGTACTAGTATCGGATA+CGG - chr8_3:2799370-2799389 None:intergenic 35.0%
! GAGTAGTGTTTAAAATGTGG+CGG - chr8_3:2799502-2799521 None:intergenic 35.0%
AGACAACACCATGAAGAAAA+AGG - chr8_3:2799612-2799631 None:intergenic 35.0%
TCGTGATAAACTAAGAAGCA+TGG + chr8_3:2799631-2799650 Msa1269580:intron 35.0%
! CGTGATAAACTAAGAAGCAT+GGG + chr8_3:2799632-2799651 Msa1269580:intron 35.0%
AGCAAAGGCTTCTCTTAAAT+AGG + chr8_3:2799666-2799685 Msa1269580:intron 35.0%
TTATAACATTTGTTTGGGGG+GGG + chr8_3:2799709-2799728 Msa1269580:intron 35.0%
AGCCTAGTTACATCAACAAA+AGG - chr8_3:2799872-2799891 None:intergenic 35.0%
GGGGAAACATATATGAACTA+AGG - chr8_3:2799929-2799948 None:intergenic 35.0%
CATATATGTTTCCCCGATAT+TGG + chr8_3:2799934-2799953 Msa1269580:intron 35.0%
CATCAAAAGAATTATGCGTC+TGG - chr8_3:2799997-2800016 None:intergenic 35.0%
! GCATAATTCTTTTGATGTCG+AGG + chr8_3:2800000-2800019 Msa1269580:intron 35.0%
GCAAGAATATGATAGGGATT+AGG + chr8_3:2800055-2800074 Msa1269580:intron 35.0%
! TAGCGTAAACCTACTACTTT+TGG + chr8_3:2800391-2800410 Msa1269580:intron 35.0%
AAGGAACTCCTAAAAACTCA+GGG - chr8_3:2800520-2800539 None:intergenic 35.0%
GGGGAAACATATATGAACTA+AGG - chr8_3:2799929-2799948 None:intergenic 35.0%
! ATGTTTCCCCAATATTGGTT+TGG + chr8_3:2800583-2800602 Msa1269580:intron 35.0%
CAGGATACAATGAGTAAGAA+TGG - chr8_3:2800725-2800744 None:intergenic 35.0%
ACTCATTGTATCCTGAATTC+TGG + chr8_3:2800730-2800749 Msa1269580:intron 35.0%
CTCTTTAACTACCAGAATTC+AGG - chr8_3:2800744-2800763 None:intergenic 35.0%
! CCGTTGACAATCATGAATTT+TGG + chr8_3:2801051-2801070 Msa1269580:CDS 35.0%
CATGTAGTATACCAAACATG+AGG + chr8_3:2801162-2801181 Msa1269580:three_prime_UTR 35.0%
! TACTTCCTTAGTCTAGTTTG+TGG + chr8_3:2801244-2801263 Msa1269580:three_prime_UTR 35.0%
! CATTCGTTGTTACTTGTTTC+TGG + chr8_3:2801294-2801313 Msa1269580:three_prime_UTR 35.0%
!! TCGATCGATTTGTTGTAAGT+TGG + chr8_3:2801370-2801389 Msa1269580:three_prime_UTR 35.0%
AAATGTCAATCAGTGCCTTC+AGG + chr8_3:2796839-2796858 Msa1269580:five_prime_UTR 40.0%
AATGTCAATCAGTGCCTTCA+GGG + chr8_3:2796840-2796859 Msa1269580:five_prime_UTR 40.0%
!! TTCTCTGAAACGTGAATACG+TGG - chr8_3:2797070-2797089 None:intergenic 40.0%
TGAACATGAGGTTGAACTTG+AGG - chr8_3:2797195-2797214 None:intergenic 40.0%
! GTGTTTGTGTTTGTGTTGGT+GGG - chr8_3:2797231-2797250 None:intergenic 40.0%
TGTGTTTGTGTTTGTGTTGG+TGG - chr8_3:2797232-2797251 None:intergenic 40.0%
! AGAGTGAGAATCAGAGTGTT+GGG - chr8_3:2797271-2797290 None:intergenic 40.0%
! TTTAGGATACGGAGCGTAAT+CGG - chr8_3:2797301-2797320 None:intergenic 40.0%
! TTTGGGTCGAGTTTAGGATA+CGG - chr8_3:2797312-2797331 None:intergenic 40.0%
!! GATTCGGTGAAAGATGTTCT+TGG + chr8_3:2797562-2797581 Msa1269580:CDS 40.0%
AAGATCTTGCTGGAAACATG+TGG + chr8_3:2797626-2797645 Msa1269580:CDS 40.0%
TTACTTTGTATGTGCATGGC+TGG + chr8_3:2797805-2797824 Msa1269580:intron 40.0%
TACTTTGTATGTGCATGGCT+GGG + chr8_3:2797806-2797825 Msa1269580:intron 40.0%
AAGATAGAGGCCAATTAGAG+AGG + chr8_3:2797869-2797888 Msa1269580:intron 40.0%
GCAAACACATCCTCTCTAAT+TGG - chr8_3:2797882-2797901 None:intergenic 40.0%
AGAGGATGTGTTTGCATTTC+TGG + chr8_3:2797887-2797906 Msa1269580:intron 40.0%
! GTTGTATGTGAAGGAAGTGT+TGG + chr8_3:2797969-2797988 Msa1269580:intron 40.0%
AGGATCATGTGTTCAATGTG+TGG + chr8_3:2798037-2798056 Msa1269580:intron 40.0%
!!! AACTTTTGAGACTGTACCAG+AGG + chr8_3:2798633-2798652 Msa1269580:CDS 40.0%
AAATACAAGACTCCCATGAC+AGG - chr8_3:2798706-2798725 None:intergenic 40.0%
AACAAAGCGGTAACAAGCAA+AGG - chr8_3:2798828-2798847 None:intergenic 40.0%
AATTTCCGGGACACAAATTG+GGG - chr8_3:2799012-2799031 None:intergenic 40.0%
TTGTGTCCCGGAAATTTAGT+TGG + chr8_3:2799016-2799035 Msa1269580:intron 40.0%
AAAATCACACTCTCTTCCCT+TGG + chr8_3:2799062-2799081 Msa1269580:intron 40.0%
GCTGGTGATATTAGTCGTTA+AGG - chr8_3:2799113-2799132 None:intergenic 40.0%
CATGCAAGACTACCGTAAAA+GGG - chr8_3:2799296-2799315 None:intergenic 40.0%
ACATGCAAGACTACCGTAAA+AGG - chr8_3:2799297-2799316 None:intergenic 40.0%
TATAACATTTGTTTGGGGGG+GGG + chr8_3:2799710-2799729 Msa1269580:intron 40.0%
! ATGTTTCCCCGATATTGGTT+TGG + chr8_3:2799939-2799958 Msa1269580:intron 40.0%
TAGGGAAATGCTAAAGAGTG+CGG + chr8_3:2800273-2800292 Msa1269580:intron 40.0%
CAGCCTAGTTACATCAACAA+AGG - chr8_3:2799873-2799892 None:intergenic 40.0%
CAAGGAACTCCTAAAAACTC+AGG - chr8_3:2800521-2800540 None:intergenic 40.0%
GAATTTGAGAGAGAGATGCA+AGG - chr8_3:2800539-2800558 None:intergenic 40.0%
! ATGTTGAGGGTATAAAGGAG+TGG + chr8_3:2800658-2800677 Msa1269580:intron 40.0%
AAAGGAGTGGAAGCTAACTA+AGG + chr8_3:2800671-2800690 Msa1269580:intron 40.0%
GACTACACTTATATGGTGTG+TGG + chr8_3:2800838-2800857 Msa1269580:intron 40.0%
ATCAACACAGACCTCATGTT+TGG - chr8_3:2801176-2801195 None:intergenic 40.0%
TAGCTCCACAAACTAGACTA+AGG - chr8_3:2801252-2801271 None:intergenic 40.0%
!! ATTGTTGACTTGGGGAGGAT+CGG - chr8_3:2797148-2797167 None:intergenic 45.0%
!! CTCATATTGTTGACTTGGGG+AGG - chr8_3:2797153-2797172 None:intergenic 45.0%
ACATGAGGTTGAACTTGAGG+AGG - chr8_3:2797192-2797211 None:intergenic 45.0%
! TTGTGTTTGTGTTGGTGGGT+TGG - chr8_3:2797227-2797246 None:intergenic 45.0%
!! GAATCAGAGTGTTGGGGTTT+GGG - chr8_3:2797264-2797283 None:intergenic 45.0%
!! AGAATCAGAGTGTTGGGGTT+TGG - chr8_3:2797265-2797284 None:intergenic 45.0%
!! GAGTGAGAATCAGAGTGTTG+GGG - chr8_3:2797270-2797289 None:intergenic 45.0%
GAGAGTGAGAATCAGAGTGT+TGG - chr8_3:2797272-2797291 None:intergenic 45.0%
TTAGGATACGGAGCGTAATC+GGG - chr8_3:2797300-2797319 None:intergenic 45.0%
ACATAGGGATTAGATTCGGC+GGG - chr8_3:2797405-2797424 None:intergenic 45.0%
GACATAGGGATTAGATTCGG+CGG - chr8_3:2797406-2797425 None:intergenic 45.0%
! ACTCTTAGCAGAAGTGGGTT+CGG - chr8_3:2797445-2797464 None:intergenic 45.0%
AGCAAGATCTTCAGCCTTCT+TGG - chr8_3:2797617-2797636 None:intergenic 45.0%
AAGAAGGCTGAAGATCTTGC+TGG + chr8_3:2797616-2797635 Msa1269580:CDS 45.0%
ACTTTGTATGTGCATGGCTG+GGG + chr8_3:2797807-2797826 Msa1269580:intron 45.0%
ACCTGCGATGTTGTATGTGA+AGG + chr8_3:2797960-2797979 Msa1269580:intron 45.0%
TCCTTCACATACAACATCGC+AGG - chr8_3:2797964-2797983 None:intergenic 45.0%
GAAACTAGGCTTAGGTGCTT+TGG + chr8_3:2798124-2798143 Msa1269580:intron 45.0%
ATTAAGTGGGGTAGGCTACA+TGG - chr8_3:2798341-2798360 None:intergenic 45.0%
TGTAGCCTACCCCACTTAAT+TGG + chr8_3:2798341-2798360 Msa1269580:intron 45.0%
ACAGCAGCATCAGCAAAACT+AGG - chr8_3:2798550-2798569 None:intergenic 45.0%
!! TAGTTTTGCTGATGCTGCTG+TGG + chr8_3:2798549-2798568 Msa1269580:CDS 45.0%
! AGTTTTGCTGATGCTGCTGT+GGG + chr8_3:2798550-2798569 Msa1269580:CDS 45.0%
TGCTCAGGGAACAAAAGTTC+TGG + chr8_3:2798579-2798598 Msa1269580:CDS 45.0%
! GGAACAAAAGTTCTGGCAGA+AGG + chr8_3:2798586-2798605 Msa1269580:CDS 45.0%
! ACAAAAGTTCTGGCAGAAGG+TGG + chr8_3:2798589-2798608 Msa1269580:CDS 45.0%
AACCCACTTTCTTACCAGAC+TGG + chr8_3:2798757-2798776 Msa1269580:CDS 45.0%
CACCAGTCTGGTAAGAAAGT+GGG - chr8_3:2798762-2798781 None:intergenic 45.0%
TCACCAGTCTGGTAAGAAAG+TGG - chr8_3:2798763-2798782 None:intergenic 45.0%
TAAACCCCCAATTTGTGTCC+CGG + chr8_3:2799004-2799023 Msa1269580:intron 45.0%
ATTTCCGGGACACAAATTGG+GGG - chr8_3:2799011-2799030 None:intergenic 45.0%
TGCATGTTACCTATGAACCC+AGG + chr8_3:2799310-2799329 Msa1269580:intron 45.0%
! TTTGGAGTACCTGGGTTCAT+AGG - chr8_3:2799322-2799341 None:intergenic 45.0%
TGGTAGAGAAAGACTGTACG+AGG - chr8_3:2799567-2799586 None:intergenic 45.0%
TGGGCAACTGAATAGAGCAA+AGG + chr8_3:2799651-2799670 Msa1269580:intron 45.0%
ATAACATTTGTTTGGGGGGG+GGG + chr8_3:2799711-2799730 Msa1269580:intron 45.0%
AACAAGTGCCCTAAGGGTTA+GGG - chr8_3:2799827-2799846 None:intergenic 45.0%
TAACAAGTGCCCTAAGGGTT+AGG - chr8_3:2799828-2799847 None:intergenic 45.0%
CATGCTAACAAGTGCCCTAA+GGG - chr8_3:2799833-2799852 None:intergenic 45.0%
TCATGCTAACAAGTGCCCTA+AGG - chr8_3:2799834-2799853 None:intergenic 45.0%
ATTCTTGCAAGATGTGTGCG+AGG + chr8_3:2800032-2800051 Msa1269580:intron 45.0%
TTCTTGCAAGATGTGTGCGA+GGG + chr8_3:2800033-2800052 Msa1269580:intron 45.0%
TGCGAGGGCAAGAATATGAT+AGG + chr8_3:2800048-2800067 Msa1269580:intron 45.0%
GCGAGGGCAAGAATATGATA+GGG + chr8_3:2800049-2800068 Msa1269580:intron 45.0%
TAACAAGTGCCCTAAGGGTT+GGG - chr8_3:2799828-2799847 None:intergenic 45.0%
CATGCTAACAAGTGCCCTAA+GGG - chr8_3:2799833-2799852 None:intergenic 45.0%
TCATGCTAACAAGTGCCCTA+AGG - chr8_3:2799834-2799853 None:intergenic 45.0%
! AGCTCAAGCCCTGAGTTTTT+AGG + chr8_3:2799899-2799918 Msa1269580:intron 45.0%
GAGTGGAAGCTAACTAAGGT+GGG + chr8_3:2800675-2800694 Msa1269580:intron 45.0%
!!! ATATTTTTATAAATATTGAT+TGG + chr8_3:2800115-2800134 Msa1269580:intron 5.0%
!! AAAATAATATATTAAACTTT+AGG + chr8_3:2800254-2800273 Msa1269580:intron 5.0%
!! AAATAATATATTAAACTTTA+GGG + chr8_3:2800255-2800274 Msa1269580:intron 5.0%
TGGACTTGGGCTTGAACATG+AGG - chr8_3:2797207-2797226 None:intergenic 50.0%
!! TGTGTTGGTGGGTTGGACTT+GGG - chr8_3:2797220-2797239 None:intergenic 50.0%
!! TTGTGTTGGTGGGTTGGACT+TGG - chr8_3:2797221-2797240 None:intergenic 50.0%
!! AGAGTGTTGGGGTTTGGGAT+TGG - chr8_3:2797259-2797278 None:intergenic 50.0%
TAGGATACGGAGCGTAATCG+GGG - chr8_3:2797299-2797318 None:intergenic 50.0%
ACGTCGTTTGGGTCGAGTTT+AGG - chr8_3:2797318-2797337 None:intergenic 50.0%
GATTCAGTAGCAACAGGTGG+TGG - chr8_3:2797354-2797373 None:intergenic 50.0%
CGAGATTCAGTAGCAACAGG+TGG - chr8_3:2797357-2797376 None:intergenic 50.0%
ACTGGTGCAGGAGAGACATA+GGG - chr8_3:2797420-2797439 None:intergenic 50.0%
AACTGGTGCAGGAGAGACAT+AGG - chr8_3:2797421-2797440 None:intergenic 50.0%
! CTCTTAGCAGAAGTGGGTTC+GGG - chr8_3:2797444-2797463 None:intergenic 50.0%
AGCTGCTGAAGCTACCAAGA+AGG + chr8_3:2797600-2797619 Msa1269580:CDS 50.0%
ACTAGGCTTAGGTGCTTTGG+AGG + chr8_3:2798127-2798146 Msa1269580:intron 50.0%
TGCTGTGGGAAGAATTGCTC+AGG + chr8_3:2798564-2798583 Msa1269580:CDS 50.0%
GCTGTGGGAAGAATTGCTCA+GGG + chr8_3:2798565-2798584 Msa1269580:CDS 50.0%
ATTGAGTCTGGTCACCAGTC+TGG - chr8_3:2798774-2798793 None:intergenic 50.0%
AGACTGGTGACCAGACTCAA+TGG + chr8_3:2798773-2798792 Msa1269580:CDS 50.0%
TAACATTTGTTTGGGGGGGG+GGG + chr8_3:2799712-2799731 Msa1269580:intron 50.0%
ACAAGTGCCCTAAGGGTTAG+GGG - chr8_3:2799826-2799845 None:intergenic 50.0%
! TGCTAAAGAGTGCGGAGCAT+TGG + chr8_3:2800281-2800300 Msa1269580:intron 50.0%
CTAACAAGTGCCCTAAGGGT+TGG - chr8_3:2799829-2799848 None:intergenic 50.0%
GGAGTGGAAGCTAACTAAGG+TGG + chr8_3:2800674-2800693 Msa1269580:intron 50.0%
!! GGTTGGCTTTGCTTGTGGAT+GGG - chr8_3:2801004-2801023 None:intergenic 50.0%
!! AGTAGGGTTGGCTTTGCTTG+TGG - chr8_3:2801009-2801028 None:intergenic 50.0%
GCAGTCTCGCTGATACACTA+TGG + chr8_3:2801127-2801146 Msa1269580:exon 50.0%
AATCAGTGCCTTCAGGGCAG+AGG + chr8_3:2796846-2796865 Msa1269580:five_prime_UTR 55.0%
TAGCCTAACCTCTGCCCTGA+AGG - chr8_3:2796857-2796876 None:intergenic 55.0%
TTCAGGGCAGAGGTTAGGCT+AGG + chr8_3:2796856-2796875 Msa1269580:five_prime_UTR 55.0%
AGGATACGGAGCGTAATCGG+GGG - chr8_3:2797298-2797317 None:intergenic 55.0%
! TCAGTAGCAACAGGTGGTGG+TGG - chr8_3:2797351-2797370 None:intergenic 55.0%
GCGCGAGATTCAGTAGCAAC+AGG - chr8_3:2797360-2797379 None:intergenic 55.0%
ATTAGATTCGGCGGGCATGG+TGG - chr8_3:2797397-2797416 None:intergenic 55.0%
!! GGCTTAGGTGCTTTGGAGGT+TGG + chr8_3:2798131-2798150 Msa1269580:intron 55.0%
ACCTCTGCTGGACCTGTCAT+GGG + chr8_3:2798691-2798710 Msa1269580:CDS 55.0%
!! AGACTGTACGAGGAGCACTG+AGG - chr8_3:2799557-2799576 None:intergenic 55.0%
AACATTTGTTTGGGGGGGGG+GGG + chr8_3:2799713-2799732 Msa1269580:intron 55.0%
! GGGGCTTAGGGCACTTGTTA+AGG - chr8_3:2799807-2799826 None:intergenic 55.0%
CCCTAAGGGTTAGGGGCTTA+GGG - chr8_3:2799819-2799838 None:intergenic 55.0%
CCCTAAGCCCCTAACCCTTA+GGG + chr8_3:2799816-2799835 Msa1269580:intron 55.0%
ACTGCTCGCAGCTGATGCAA+TGG - chr8_3:2800978-2800997 None:intergenic 55.0%
!! GGGTTGGCTTTGCTTGTGGA+TGG - chr8_3:2801005-2801024 None:intergenic 55.0%
GTGCCTTCAGGGCAGAGGTT+AGG + chr8_3:2796851-2796870 Msa1269580:five_prime_UTR 60.0%
! GTGGTGGTGCGACGTCGTTT+GGG - chr8_3:2797329-2797348 None:intergenic 60.0%
!! GTAGCAACAGGTGGTGGTGG+TGG - chr8_3:2797348-2797367 None:intergenic 60.0%
GGGATTAGATTCGGCGGGCA+TGG - chr8_3:2797400-2797419 None:intergenic 60.0%
! GCAGAAGTGGGTTCGGGAAC+TGG - chr8_3:2797438-2797457 None:intergenic 60.0%
TGCTACCTCTCCACCTCTGC+TGG + chr8_3:2798679-2798698 Msa1269580:CDS 60.0%
CATGACAGGTCCAGCAGAGG+TGG - chr8_3:2798692-2798711 None:intergenic 60.0%
CACCTCTGCTGGACCTGTCA+TGG + chr8_3:2798690-2798709 Msa1269580:CDS 60.0%
TCCCATGACAGGTCCAGCAG+AGG - chr8_3:2798695-2798714 None:intergenic 60.0%
GCCCTAAGCCCCTAACCCTT+AGG + chr8_3:2799815-2799834 Msa1269580:intron 60.0%
GCCCTAAGGGTTAGGGGCTT+AGG - chr8_3:2799820-2799839 None:intergenic 60.0%
! TGGGCGTAGGGCGCTTGTTA+AGG - chr8_3:2800420-2800439 None:intergenic 60.0%
TGCCCTAAGGGTTGGGCGTA+GGG - chr8_3:2800432-2800451 None:intergenic 60.0%
! GGTGGTGGTGCGACGTCGTT+TGG - chr8_3:2797330-2797349 None:intergenic 65.0%
!! GCAACAGGTGGTGGTGGTGG+TGG - chr8_3:2797345-2797364 None:intergenic 65.0%
!! CATGGTGGTGGCAGCATCGG+TGG - chr8_3:2797382-2797401 None:intergenic 65.0%
!! GGGCATGGTGGTGGCAGCAT+CGG - chr8_3:2797385-2797404 None:intergenic 65.0%
AGATTCGGCGGGCATGGTGG+TGG - chr8_3:2797394-2797413 None:intergenic 65.0%
GTGGGTTCGGGAACTGGTGC+AGG - chr8_3:2797432-2797451 None:intergenic 65.0%
CAGGTCCAGCAGAGGTGGAG+AGG - chr8_3:2798687-2798706 None:intergenic 65.0%
CGCCCTACGCCCAACCCTTA+GGG + chr8_3:2800427-2800446 Msa1269580:intron 65.0%
GTGCCCTAAGGGTTGGGCGT+AGG - chr8_3:2800433-2800452 None:intergenic 65.0%
GCGCCCTACGCCCAACCCTT+AGG + chr8_3:2800426-2800445 Msa1269580:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 2796825 2801445 2796825 ID=Msa1269580;Name=Msa1269580
chr8_3 mRNA 2796825 2801445 2796825 ID=Msa1269580-mRNA-1;Parent=Msa1269580;Name=Msa1269580-mRNA-1;_AED=0.02;_eAED=0.02;_QI=343|1|1|1|1|1|4|306|280
chr8_3 exon 2796825 2797462 2796825 ID=Msa1269580-mRNA-1:exon:920;Parent=Msa1269580-mRNA-1
chr8_3 exon 2797554 2797655 2797554 ID=Msa1269580-mRNA-1:exon:921;Parent=Msa1269580-mRNA-1
chr8_3 exon 2798536 2798807 2798536 ID=Msa1269580-mRNA-1:exon:922;Parent=Msa1269580-mRNA-1
chr8_3 exon 2800966 2801445 2800966 ID=Msa1269580-mRNA-1:exon:923;Parent=Msa1269580-mRNA-1
chr8_3 five_prime_UTR 2796825 2797167 2796825 ID=Msa1269580-mRNA-1:five_prime_utr;Parent=Msa1269580-mRNA-1
chr8_3 CDS 2797168 2797462 2797168 ID=Msa1269580-mRNA-1:cds;Parent=Msa1269580-mRNA-1
chr8_3 CDS 2797554 2797655 2797554 ID=Msa1269580-mRNA-1:cds;Parent=Msa1269580-mRNA-1
chr8_3 CDS 2798536 2798807 2798536 ID=Msa1269580-mRNA-1:cds;Parent=Msa1269580-mRNA-1
chr8_3 CDS 2800966 2801139 2800966 ID=Msa1269580-mRNA-1:cds;Parent=Msa1269580-mRNA-1
chr8_3 three_prime_UTR 2801140 2801445 2801140 ID=Msa1269580-mRNA-1:three_prime_utr;Parent=Msa1269580-mRNA-1
Gene Sequence

>Msa1269580

ATGAGTAGTAGTGGTGATCAACCTCCTCAAGTTCAACCTCATGTTCAAGCCCAAGTCCAACCCACCAACACAAACACAAACACAAACACCAATCCCAAACCCCAACACTCTGATTCTCACTCTCACACCCCCGATTACGCTCCGTATCCTAAACTCGACCCAAACGACGTCGCACCACCACCACCACCACCTGTTGCTACTGAATCTCGCGCCACCGATGCTGCCACCACCATGCCCGCCGAATCTAATCCCTATGTCTCTCCTGCACCAGTTCCCGAACCCACTTCTGCTAAGAATACTTTAGATTCGGTGAAAGATGTTCTTGGAAAATGGGGTAAGAAAGCTGCTGAAGCTACCAAGAAGGCTGAAGATCTTGCTGGAAACATGTGGCAACACTTGAAAACAGGTCCTAGTTTTGCTGATGCTGCTGTGGGAAGAATTGCTCAGGGAACAAAAGTTCTGGCAGAAGGTGGCTACGAGAAGATCTTTAGACAAACTTTTGAGACTGTACCAGAGGAACAACTTCTTAAAACATATGCATGCTACCTCTCCACCTCTGCTGGACCTGTCATGGGAGTCTTGTATTTGTCAACTGCTAAGCTCGCATTCTGTAGCGACAACCCACTTTCTTACCAGACTGGTGACCAGACTCAATGGAGCTATTATAAGGTGGTCATTCCATTGCATCAGCTGCGAGCAGTGAACCCATCCACAAGCAAAGCCAACCCTACTGAAAAATTTATACAGATTATCTCCGTTGACAATCATGAATTTTGGTTTATGGGCTTTGTGTACTACGACAGCGCTGTTAAACATATTCAAGAAGCATTGCAGTCTCGCTGA

Protein sequence

>Msa1269580

MSSSGDQPPQVQPHVQAQVQPTNTNTNTNTNPKPQHSDSHSHTPDYAPYPKLDPNDVAPPPPPPVATESRATDAATTMPAESNPYVSPAPVPEPTSAKNTLDSVKDVLGKWGKKAAEATKKAEDLAGNMWQHLKTGPSFADAAVGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLLKTYACYLSTSAGPVMGVLYLSTAKLAFCSDNPLSYQTGDQTQWSYYKVVIPLHQLRAVNPSTSKANPTEKFIQIISVDNHEFWFMGFVYYDSAVKHIQEALQSR*