Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1070700 | AES80834.1 | 79.598 | 348 | 40 | 4 | 1 | 345 | 1 | 320 | 0.0 | 544 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1070700 | sp|P49972|SR542_SOLLC | 63.664 | 333 | 101 | 6 | 1 | 323 | 1 | 323 | 1.06e-137 | 403 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1070700 | G7KZF7 | 79.598 | 348 | 40 | 4 | 1 | 345 | 1 | 320 | 0.0 | 544 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1028590 | Msa1070700 | 0.801242 | 9.875372e-49 | -8.615850e-47 |
| Msa1034310 | Msa1070700 | 0.803414 | 3.526237e-49 | -8.615850e-47 |
| Msa1042660 | Msa1070700 | 0.806701 | 7.238898e-50 | -8.615850e-47 |
| Msa1070680 | Msa1070700 | 0.868557 | 5.974871e-66 | -8.615850e-47 |
| Msa1070700 | Msa1072900 | 0.816699 | 4.834537e-52 | -8.615850e-47 |
| Msa1070700 | Msa1148980 | 0.803586 | 3.248438e-49 | -8.615850e-47 |
| Msa1070700 | Msa1428780 | 0.802015 | 6.855876e-49 | -8.615850e-47 |
| Msa0534050 | Msa1070700 | 0.810026 | 1.414036e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1070700 | MtrunA17_Chr4g0003161 | 63.385 | 325 | 105 | 5 | 1 | 321 | 1 | 315 | 3.23e-136 | 396 |
| Msa1070700 | MtrunA17_Chr2g0333241 | 61.656 | 326 | 111 | 5 | 1 | 322 | 1 | 316 | 4.71e-128 | 375 |
| Msa1070700 | MtrunA17_Chr7g0253251 | 57.101 | 345 | 85 | 7 | 17 | 347 | 1 | 296 | 1.60e-121 | 352 |
| Msa1070700 | MtrunA17_Chr7g0253151 | 94.479 | 163 | 9 | 0 | 183 | 345 | 5 | 167 | 7.02e-112 | 322 |
| Msa1070700 | MtrunA17_Chr7g0253161 | 74.233 | 163 | 20 | 2 | 1 | 163 | 1 | 141 | 6.91e-78 | 236 |
| Msa1070700 | MtrunA17_Chr7g0266491 | 29.739 | 306 | 205 | 5 | 13 | 316 | 78 | 375 | 3.04e-38 | 143 |
| Msa1070700 | MtrunA17_Chr8g0350161 | 29.870 | 308 | 191 | 11 | 10 | 301 | 70 | 368 | 3.70e-22 | 95.9 |
| Msa1070700 | MtrunA17_Chr4g0073891 | 25.373 | 201 | 133 | 4 | 112 | 301 | 436 | 630 | 2.13e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1070700 | AT1G48900.2 | 60.597 | 335 | 112 | 6 | 1 | 325 | 1 | 325 | 5.11e-134 | 389 |
| Msa1070700 | AT1G48900.1 | 60.597 | 335 | 112 | 6 | 1 | 325 | 1 | 325 | 1.72e-133 | 390 |
| Msa1070700 | AT1G15310.1 | 59.021 | 327 | 118 | 6 | 1 | 323 | 1 | 315 | 3.73e-125 | 368 |
| Msa1070700 | AT5G49500.1 | 54.386 | 342 | 134 | 7 | 1 | 330 | 1 | 332 | 4.66e-113 | 338 |
| Msa1070700 | AT5G49500.2 | 62.085 | 211 | 68 | 3 | 126 | 330 | 6 | 210 | 2.14e-82 | 255 |
| Msa1070700 | AT5G03940.1 | 28.254 | 315 | 218 | 4 | 3 | 316 | 78 | 385 | 1.92e-36 | 139 |
| Msa1070700 | AT2G45770.1 | 31.095 | 283 | 172 | 9 | 30 | 301 | 95 | 365 | 1.79e-26 | 108 |
| Msa1070700 | AT5G66970.1 | 34.911 | 169 | 95 | 6 | 1 | 163 | 1 | 160 | 3.24e-18 | 81.6 |
| Msa1070700 | AT4G30600.2 | 25.871 | 201 | 132 | 4 | 112 | 301 | 439 | 633 | 7.99e-14 | 72.8 |
| Msa1070700 | AT4G30600.1 | 25.871 | 201 | 132 | 4 | 112 | 301 | 439 | 633 | 7.99e-14 | 72.8 |
Find 88 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCTTTCCATCCCAAATT+AGG | 0.089150 | 7_2:-67023117 | Msa1070700:CDS |
| GACACTTGTATTCCCTAATT+TGG | 0.092925 | 7_2:+67023104 | None:intergenic |
| TACTATAGATTTAGGATTAA+AGG | 0.178022 | 7_2:+67021084 | None:intergenic |
| TTAGAAGTTACTATAGATTT+AGG | 0.190164 | 7_2:+67021076 | None:intergenic |
| TCTACGATCGATGAAGCTTT+AGG | 0.247113 | 7_2:+67023413 | None:intergenic |
| GAAACCAGATCTTGTTATAT+TGG | 0.248024 | 7_2:-67021830 | Msa1070700:CDS |
| CCGTTTGTTAGTCGTCTATT+AGG | 0.257109 | 7_2:-67021422 | Msa1070700:CDS |
| ACTCTGACTGAGACATTCTA+AGG | 0.267883 | 7_2:-67021271 | Msa1070700:exon |
| GATGAGTTTGGGTTCAATAA+TGG | 0.269931 | 7_2:+67023266 | None:intergenic |
| AGCTGTAATTGTTTCTAAAA+TGG | 0.274828 | 7_2:-67021722 | Msa1070700:CDS |
| CTTCTTTCCATCCCAAATTA+GGG | 0.277639 | 7_2:-67023116 | Msa1070700:CDS |
| TTAGAAATTCAGTATGAGTT+TGG | 0.298643 | 7_2:+67021199 | None:intergenic |
| AGAATGGGTCTCGCTGATTT+AGG | 0.298650 | 7_2:-67023393 | Msa1070700:CDS |
| CTACGATCGATGAAGCTTTA+GGG | 0.306857 | 7_2:+67023414 | None:intergenic |
| ACGCATGTCTCGGATGAGTT+TGG | 0.314921 | 7_2:+67023254 | None:intergenic |
| CGCATGTCTCGGATGAGTTT+GGG | 0.322064 | 7_2:+67023255 | None:intergenic |
| TACTCGATTTCGTCAGATTA+GGG | 0.322776 | 7_2:+67023448 | None:intergenic |
| TTCACCAGTTCCTATGAATA+TGG | 0.324024 | 7_2:+67021478 | None:intergenic |
| TTTATTAGCAACTGCACATC+TGG | 0.344921 | 7_2:-67021236 | Msa1070700:three_prime_UTR |
| ACACTTGTATTCCCTAATTT+GGG | 0.345584 | 7_2:+67023105 | None:intergenic |
| TAGAAATTCAGTATGAGTTT+GGG | 0.356630 | 7_2:+67021200 | None:intergenic |
| TCCTATTTCCTATCGGGTGT+CGG | 0.366990 | 7_2:+67023517 | None:intergenic |
| CTTTCTTTCCTATTTCCTAT+CGG | 0.375233 | 7_2:+67023510 | None:intergenic |
| CCCGACACCCGATAGGAAAT+AGG | 0.381345 | 7_2:-67023518 | Msa1070700:five_prime_UTR |
| GAAACTAACATCCCTTGTTA+TGG | 0.396955 | 7_2:-67022855 | Msa1070700:CDS |
| TTACTCGATTTCGTCAGATT+AGG | 0.399472 | 7_2:+67023447 | None:intergenic |
| CCTAATTTGGGATGGAAAGA+AGG | 0.409718 | 7_2:+67023117 | None:intergenic |
| TTGGTTATCGATGGCAATAT+TGG | 0.409844 | 7_2:-67021811 | Msa1070700:CDS |
| GCAAATTATTATCAGAAGAA+AGG | 0.415429 | 7_2:-67022951 | Msa1070700:CDS |
| TTTCTTTCCTATTTCCTATC+GGG | 0.415820 | 7_2:+67023511 | None:intergenic |
| AGATGTGCAGTTGCTAATAA+AGG | 0.425603 | 7_2:+67021238 | None:intergenic |
| GTCTATTAGGCATGGATGAC+TGG | 0.428294 | 7_2:-67021409 | Msa1070700:CDS |
| ATCCAACAAGTTGTGTTTGA+CGG | 0.430987 | 7_2:-67023165 | Msa1070700:CDS |
| CCTATTTCCTATCGGGTGTC+GGG | 0.440799 | 7_2:+67023518 | None:intergenic |
| CATAGGAACTGGTGAACATA+TGG | 0.442484 | 7_2:-67021471 | Msa1070700:CDS |
| AAGAGTCCGGCCATATTCAT+AGG | 0.449206 | 7_2:-67021488 | Msa1070700:CDS |
| GTCCGTCAAACACAACTTGT+TGG | 0.456424 | 7_2:+67023163 | None:intergenic |
| GATGGCTATGCCATGGGTGG+TGG | 0.461610 | 7_2:-67021700 | Msa1070700:CDS |
| AGCTTCATCGATCGTAGAAT+GGG | 0.462645 | 7_2:-67023408 | Msa1070700:exon |
| ATCATGTTTGTTGGTGCTCA+AGG | 0.462840 | 7_2:-67023081 | Msa1070700:intron |
| TGACGGACTCTGCAAATTGT+TGG | 0.465391 | 7_2:-67023148 | Msa1070700:CDS |
| ATAACCAATATAACAAGATC+TGG | 0.467853 | 7_2:+67021826 | None:intergenic |
| CCGGCCATATTCATAGGAAC+TGG | 0.473590 | 7_2:-67021482 | Msa1070700:CDS |
| AAGCTTCATCGATCGTAGAA+TGG | 0.476930 | 7_2:-67023409 | Msa1070700:exon |
| ACAAGTGTCATCATGTTTGT+TGG | 0.477640 | 7_2:-67023090 | Msa1070700:CDS |
| TTATAATTGTTGATGTGAGT+GGG | 0.478094 | 7_2:-67022000 | Msa1070700:CDS |
| TGTACAGATACACTTAGAAA+TGG | 0.490576 | 7_2:-67022909 | Msa1070700:CDS |
| TGATCATCGTAGTCTTAAGC+AGG | 0.492163 | 7_2:-67021776 | Msa1070700:CDS |
| CTAATTTGGGATGGAAAGAA+GGG | 0.511281 | 7_2:+67023118 | None:intergenic |
| CATACGCTAAAATAATCATA+AGG | 0.514497 | 7_2:+67021014 | None:intergenic |
| CTTGTTATATTGGTTATCGA+TGG | 0.521115 | 7_2:-67021820 | Msa1070700:CDS |
| GTAATTGTTTCTAAAATGGA+TGG | 0.523200 | 7_2:-67021718 | Msa1070700:CDS |
| TGTTAGTCGTCTATTAGGCA+TGG | 0.525929 | 7_2:-67021417 | Msa1070700:CDS |
| TGTTGCAGCAACAAAGAGTC+CGG | 0.530643 | 7_2:-67021501 | Msa1070700:CDS |
| TTGTATTCCCTAATTTGGGA+TGG | 0.531868 | 7_2:+67023109 | None:intergenic |
| TTTCCTATCGGGTGTCGGGT+CGG | 0.542192 | 7_2:+67023522 | None:intergenic |
| AGCAAGTGGTGCAACGATGG+AGG | 0.547702 | 7_2:+67021296 | None:intergenic |
| CTTATAATTGTTGATGTGAG+TGG | 0.555763 | 7_2:-67022001 | Msa1070700:CDS |
| CCTAATAGACGACTAACAAA+CGG | 0.558547 | 7_2:+67021422 | None:intergenic |
| TCAAGCAAGTGGTGCAACGA+TGG | 0.562761 | 7_2:+67021293 | None:intergenic |
| ATGGGTCTCGCTGATTTAGG+AGG | 0.563722 | 7_2:-67023390 | Msa1070700:CDS |
| CCAGTTCCTATGAATATGGC+CGG | 0.563818 | 7_2:+67021482 | None:intergenic |
| TCACCAAGTTTCAAAAGCAA+CGG | 0.573382 | 7_2:-67021939 | Msa1070700:intron |
| TGTATGTACCTTCCATAACA+AGG | 0.573963 | 7_2:+67022843 | None:intergenic |
| GCAAGTGGTGCAACGATGGA+GGG | 0.574180 | 7_2:+67021297 | None:intergenic |
| ATACCGACCCGACACCCGAT+AGG | 0.583431 | 7_2:-67023525 | Msa1070700:five_prime_UTR |
| TCTCATAGAGGCAACGCTTG+CGG | 0.583805 | 7_2:+67023310 | None:intergenic |
| TTTACACAGAGTGTTGACAT+TGG | 0.589679 | 7_2:-67021745 | Msa1070700:CDS |
| CATCTATAGCTACACAGAGT+CGG | 0.594105 | 7_2:-67022080 | Msa1070700:intron |
| CTCTGACTGAGACATTCTAA+GGG | 0.611328 | 7_2:-67021270 | Msa1070700:exon |
| GCTAAGAGAACCACCACCCA+TGG | 0.613918 | 7_2:+67021690 | None:intergenic |
| CTAACATCCCTTGTTATGGA+AGG | 0.615727 | 7_2:-67022851 | Msa1070700:intron |
| TGTGTCAAAATTGCTGTGAA+AGG | 0.627995 | 7_2:-67022055 | Msa1070700:CDS |
| AAAATGGATGGCTATGCCAT+GGG | 0.631223 | 7_2:-67021706 | Msa1070700:CDS |
| TAAAATGGATGGCTATGCCA+TGG | 0.631944 | 7_2:-67021707 | Msa1070700:CDS |
| CTCAGTCAGAGTCAAGCAAG+TGG | 0.633868 | 7_2:+67021282 | None:intergenic |
| TATGTTTATCGCATCCACAA+TGG | 0.634586 | 7_2:-67020991 | Msa1070700:three_prime_UTR |
| TGGGTCTCGCTGATTTAGGA+GGG | 0.636242 | 7_2:-67023389 | Msa1070700:CDS |
| AACACTCTGTGTAAATGCTG+TGG | 0.638282 | 7_2:+67021753 | None:intergenic |
| CAAAATTGCTGTGAAAGGTG+TGG | 0.644301 | 7_2:-67022050 | Msa1070700:CDS |
| TATAATTGTTGATGTGAGTG+GGG | 0.652165 | 7_2:-67021999 | Msa1070700:CDS |
| ATAATTGTTGATGTGAGTGG+GGG | 0.666172 | 7_2:-67021998 | Msa1070700:CDS |
| AAGCTCGAGTAATCTCATAG+AGG | 0.667280 | 7_2:+67023298 | None:intergenic |
| GTATGTACCTTCCATAACAA+GGG | 0.668068 | 7_2:+67022844 | None:intergenic |
| GAAAGGTGTGGACAGATGCA+AGG | 0.669438 | 7_2:-67022038 | Msa1070700:CDS |
| ATGGATGGCTATGCCATGGG+TGG | 0.678999 | 7_2:-67021703 | Msa1070700:CDS |
| TAATTGTTGATGTGAGTGGG+GGG | 0.704646 | 7_2:-67021997 | Msa1070700:CDS |
| AGGTGTGGACAGATGCAAGG+AGG | 0.736206 | 7_2:-67022035 | Msa1070700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAATAATTGAATTTTTAAA+CGG | + | chr7_2:67022801-67022820 | None:intergenic | 10.0% |
| !!! | TTGTTTTTTTAATAGTAATA+AGG | + | chr7_2:67023520-67023539 | None:intergenic | 10.0% |
| !! | ATAAATTATAACATGAATGA+AGG | + | chr7_2:67021835-67021854 | None:intergenic | 15.0% |
| !!! | TTTTTTTGTTAATTTCTAGT+AGG | - | chr7_2:67022140-67022159 | Msa1070700:intron | 15.0% |
| !!! | TTTTTTGTTAATTTCTAGTA+GGG | - | chr7_2:67022141-67022160 | Msa1070700:intron | 15.0% |
| !! | TAACAAGAACAAAAAAAAAA+AGG | + | chr7_2:67022182-67022201 | None:intergenic | 15.0% |
| !!! | ATTTGATACTTTTGTTATAT+TGG | - | chr7_2:67022529-67022548 | Msa1070700:intron | 15.0% |
| !!! | ACTTTAAATTTAAAGTGAAT+TGG | + | chr7_2:67022766-67022785 | None:intergenic | 15.0% |
| !! | CTATATGTAATGTTAAATTC+AGG | - | chr7_2:67021415-67021434 | Msa1070700:CDS | 20.0% |
| !! | TTTAACAATATACAAACCTT+TGG | - | chr7_2:67021756-67021775 | Msa1070700:CDS | 20.0% |
| !! | AAAGAATGATAATATTCTCA+CGG | - | chr7_2:67021856-67021875 | Msa1070700:intron | 20.0% |
| !!! | AAATAACTTGTATTCTGATA+GGG | + | chr7_2:67022011-67022030 | None:intergenic | 20.0% |
| !!! | AAAATAACTTGTATTCTGAT+AGG | + | chr7_2:67022012-67022031 | None:intergenic | 20.0% |
| !!! | TTTTTGTTAATTTCTAGTAG+GGG | - | chr7_2:67022142-67022161 | Msa1070700:intron | 20.0% |
| !! | AGAACAAAAAAAAAAAGGTT+GGG | + | chr7_2:67022177-67022196 | None:intergenic | 20.0% |
| !! | AAGAACAAAAAAAAAAAGGT+TGG | + | chr7_2:67022178-67022197 | None:intergenic | 20.0% |
| !! | GCAACGAAATAATAATTAAT+TGG | + | chr7_2:67022308-67022327 | None:intergenic | 20.0% |
| !!! | TTTGTTATATTGGTTATTGA+TGG | - | chr7_2:67022539-67022558 | Msa1070700:intron | 20.0% |
| !!! | TTAGATATTTTTCTGTGTTT+TGG | - | chr7_2:67022862-67022881 | Msa1070700:CDS | 20.0% |
| !!! | TAGATATTTTTCTGTGTTTT+GGG | - | chr7_2:67022863-67022882 | Msa1070700:CDS | 20.0% |
| !!! | TACTATAGATTTAGGATTAA+AGG | + | chr7_2:67023339-67023358 | None:intergenic | 20.0% |
| !! | TTAGAAGTTACTATAGATTT+AGG | + | chr7_2:67023347-67023366 | None:intergenic | 20.0% |
| ! | GCAAATTATTATCAGAAGAA+AGG | - | chr7_2:67021469-67021488 | Msa1070700:CDS | 25.0% |
| !! | TTTGTTGTCATATTGTTTGT+AGG | - | chr7_2:67021612-67021631 | Msa1070700:intron | 25.0% |
| ! | AACATTTCCTTAAAGAAGAT+AGG | + | chr7_2:67021700-67021719 | None:intergenic | 25.0% |
| ! | TAATTCAGAGTGATGATTAT+TGG | - | chr7_2:67021719-67021738 | Msa1070700:CDS | 25.0% |
| ! | ATGAAGGAAAACAATACAAA+GGG | + | chr7_2:67021819-67021838 | None:intergenic | 25.0% |
| ! | AATGAAGGAAAACAATACAA+AGG | + | chr7_2:67021820-67021839 | None:intergenic | 25.0% |
| ! | AAGTAAAATATATGCGATAC+AGG | + | chr7_2:67021940-67021959 | None:intergenic | 25.0% |
| ! | TTATAATTGTTGATGTGAGT+GGG | - | chr7_2:67022420-67022439 | Msa1070700:intron | 25.0% |
| ! | ATAACCAATATAACAAGATC+TGG | + | chr7_2:67022597-67022616 | None:intergenic | 25.0% |
| !!! | AGCTGTAATTGTTTCTAAAA+TGG | - | chr7_2:67022698-67022717 | Msa1070700:intron | 25.0% |
| !!! | GTAATTGTTTCTAAAATGGA+TGG | - | chr7_2:67022702-67022721 | Msa1070700:intron | 25.0% |
| ! | TAGAAATTCAGTATGAGTTT+GGG | + | chr7_2:67023223-67023242 | None:intergenic | 25.0% |
| ! | TTAGAAATTCAGTATGAGTT+TGG | + | chr7_2:67023224-67023243 | None:intergenic | 25.0% |
| ! | CATACGCTAAAATAATCATA+AGG | + | chr7_2:67023409-67023428 | None:intergenic | 25.0% |
| TTTCTTTCCTATTTCCTATC+GGG | + | chr7_2:67020912-67020931 | None:intergenic | 30.0% | |
| CTTTCTTTCCTATTTCCTAT+CGG | + | chr7_2:67020913-67020932 | None:intergenic | 30.0% | |
| ACACTTGTATTCCCTAATTT+GGG | + | chr7_2:67021318-67021337 | None:intergenic | 30.0% | |
| !! | GTAATGTTAAATTCAGGTTG+TGG | - | chr7_2:67021421-67021440 | Msa1070700:CDS | 30.0% |
| CAGAAGAAAGGATTAAAAAC+AGG | - | chr7_2:67021481-67021500 | Msa1070700:CDS | 30.0% | |
| TGTACAGATACACTTAGAAA+TGG | - | chr7_2:67021511-67021530 | Msa1070700:intron | 30.0% | |
| TCACCAATCTTCATCATATT+GGG | + | chr7_2:67021644-67021663 | None:intergenic | 30.0% | |
| ATCACCAATCTTCATCATAT+TGG | + | chr7_2:67021645-67021664 | None:intergenic | 30.0% | |
| ! | ATATGATGAAGATTGGTGAT+TGG | - | chr7_2:67021645-67021664 | Msa1070700:intron | 30.0% |
| ATAGGTAAGTGTTAAAAGCT+TGG | + | chr7_2:67021682-67021701 | None:intergenic | 30.0% | |
| ACACTTACCTATCTTCTTTA+AGG | - | chr7_2:67021690-67021709 | Msa1070700:CDS | 30.0% | |
| TGAAGGAAAACAATACAAAG+GGG | + | chr7_2:67021818-67021837 | None:intergenic | 30.0% | |
| GTATGTAACATTCCTTTGTT+TGG | - | chr7_2:67021891-67021910 | Msa1070700:intron | 30.0% | |
| ATTATCGCTCTCTTAATACA+GGG | + | chr7_2:67021981-67022000 | None:intergenic | 30.0% | |
| AATTATCGCTCTCTTAATAC+AGG | + | chr7_2:67021982-67022001 | None:intergenic | 30.0% | |
| TTCTCTTTATAGTTGCAATG+AGG | + | chr7_2:67022067-67022086 | None:intergenic | 30.0% | |
| !!! | AACATGACCTTATTTTTCCT+AGG | - | chr7_2:67022085-67022104 | Msa1070700:intron | 30.0% |
| !!! | ACATGACCTTATTTTTCCTA+GGG | - | chr7_2:67022086-67022105 | Msa1070700:intron | 30.0% |
| ATTATCAAAACTCATCTGCA+AGG | + | chr7_2:67022210-67022229 | None:intergenic | 30.0% | |
| TAATACCATTTGCTTGATCA+TGG | - | chr7_2:67022238-67022257 | Msa1070700:intron | 30.0% | |
| CTTATAATTGTTGATGTGAG+TGG | - | chr7_2:67022419-67022438 | Msa1070700:intron | 30.0% | |
| TATAATTGTTGATGTGAGTG+GGG | - | chr7_2:67022421-67022440 | Msa1070700:intron | 30.0% | |
| ! | GAAACCAGATCTTGTTATAT+TGG | - | chr7_2:67022590-67022609 | Msa1070700:intron | 30.0% |
| ! | CTTGTTATATTGGTTATCGA+TGG | - | chr7_2:67022600-67022619 | Msa1070700:intron | 30.0% |
| !!! | GGTATCCAGATTTTTGTTTT+TGG | + | chr7_2:67023088-67023107 | None:intergenic | 30.0% |
| AAAAATGGATATCTCCATTG+TGG | + | chr7_2:67023446-67023465 | None:intergenic | 30.0% | |
| !!! | TCCATTTTTGAGTACTTAAG+TGG | - | chr7_2:67023457-67023476 | Msa1070700:five_prime_UTR | 30.0% |
| !!! | CCATTTTTGAGTACTTAAGT+GGG | - | chr7_2:67023458-67023477 | Msa1070700:five_prime_UTR | 30.0% |
| TACTCGATTTCGTCAGATTA+GGG | + | chr7_2:67020975-67020994 | None:intergenic | 35.0% | |
| TTACTCGATTTCGTCAGATT+AGG | + | chr7_2:67020976-67020995 | None:intergenic | 35.0% | |
| ! | GATGAGTTTGGGTTCAATAA+TGG | + | chr7_2:67021157-67021176 | None:intergenic | 35.0% |
| ATCCAACAAGTTGTGTTTGA+CGG | - | chr7_2:67021255-67021274 | Msa1070700:three_prime_UTR | 35.0% | |
| ! | CTAATTTGGGATGGAAAGAA+GGG | + | chr7_2:67021305-67021324 | None:intergenic | 35.0% |
| CTTCTTTCCATCCCAAATTA+GGG | - | chr7_2:67021304-67021323 | Msa1070700:CDS | 35.0% | |
| TTGTATTCCCTAATTTGGGA+TGG | + | chr7_2:67021314-67021333 | None:intergenic | 35.0% | |
| GACACTTGTATTCCCTAATT+TGG | + | chr7_2:67021319-67021338 | None:intergenic | 35.0% | |
| ACAAGTGTCATCATGTTTGT+TGG | - | chr7_2:67021330-67021349 | Msa1070700:CDS | 35.0% | |
| GAAACTAACATCCCTTGTTA+TGG | - | chr7_2:67021565-67021584 | Msa1070700:intron | 35.0% | |
| GTATGTACCTTCCATAACAA+GGG | + | chr7_2:67021579-67021598 | None:intergenic | 35.0% | |
| TGTATGTACCTTCCATAACA+AGG | + | chr7_2:67021580-67021599 | None:intergenic | 35.0% | |
| GAACCCAATATGATGAAGAT+TGG | - | chr7_2:67021638-67021657 | Msa1070700:intron | 35.0% | |
| TAGTAATGTTTCAGGGAACT+GGG | + | chr7_2:67021795-67021814 | None:intergenic | 35.0% | |
| AAAGGGGTAGTAATGTTTCA+GGG | + | chr7_2:67021802-67021821 | None:intergenic | 35.0% | |
| TAAAAGCTTGCACCAAACAA+AGG | + | chr7_2:67021906-67021925 | None:intergenic | 35.0% | |
| TTATCGCTCTCTTAATACAG+GGG | + | chr7_2:67021980-67021999 | None:intergenic | 35.0% | |
| !!! | CATGACCTTATTTTTCCTAG+GGG | - | chr7_2:67022087-67022106 | Msa1070700:intron | 35.0% |
| AGTTTCCATGATCAAGCAAA+TGG | + | chr7_2:67022246-67022265 | None:intergenic | 35.0% | |
| TCTGTGTAGCTATAGATGAA+TGG | + | chr7_2:67022338-67022357 | None:intergenic | 35.0% | |
| TGTGTCAAAATTGCTGTGAA+AGG | - | chr7_2:67022365-67022384 | Msa1070700:intron | 35.0% | |
| ATAATTGTTGATGTGAGTGG+GGG | - | chr7_2:67022422-67022441 | Msa1070700:intron | 35.0% | |
| TCACCAAGTTTCAAAAGCAA+CGG | - | chr7_2:67022481-67022500 | Msa1070700:intron | 35.0% | |
| !!! | ATACCGTTGCTTTTGAAACT+TGG | + | chr7_2:67022487-67022506 | None:intergenic | 35.0% |
| TTGGTTATCGATGGCAATAT+TGG | - | chr7_2:67022609-67022628 | Msa1070700:intron | 35.0% | |
| !! | TTTACACAGAGTGTTGACAT+TGG | - | chr7_2:67022675-67022694 | Msa1070700:intron | 35.0% |
| !! | TCTGTGTTTTGGGTACATAT+TGG | - | chr7_2:67022873-67022892 | Msa1070700:CDS | 35.0% |
| TTCACCAGTTCCTATGAATA+TGG | + | chr7_2:67022945-67022964 | None:intergenic | 35.0% | |
| CCTAATAGACGACTAACAAA+CGG | + | chr7_2:67023001-67023020 | None:intergenic | 35.0% | |
| !!! | TTTGTTTTTGGCAGGTTTTG+AGG | + | chr7_2:67023076-67023095 | None:intergenic | 35.0% |
| ACCTGCCAAAAACAAAAATC+TGG | - | chr7_2:67023080-67023099 | Msa1070700:intron | 35.0% | |
| !!! | TCCAGATTTTTGTTTTTGGC+AGG | + | chr7_2:67023084-67023103 | None:intergenic | 35.0% |
| AGATGTGCAGTTGCTAATAA+AGG | + | chr7_2:67023185-67023204 | None:intergenic | 35.0% | |
| TTTATTAGCAACTGCACATC+TGG | - | chr7_2:67023184-67023203 | Msa1070700:CDS | 35.0% | |
| TATGTTTATCGCATCCACAA+TGG | - | chr7_2:67023429-67023448 | Msa1070700:five_prime_UTR | 35.0% | |
| CCCACTTAAGTACTCAAAAA+TGG | + | chr7_2:67023461-67023480 | None:intergenic | 35.0% | |
| CTACGATCGATGAAGCTTTA+GGG | + | chr7_2:67021009-67021028 | None:intergenic | 40.0% | |
| TCTACGATCGATGAAGCTTT+AGG | + | chr7_2:67021010-67021029 | None:intergenic | 40.0% | |
| AAGCTTCATCGATCGTAGAA+TGG | - | chr7_2:67021011-67021030 | Msa1070700:three_prime_UTR | 40.0% | |
| AGCTTCATCGATCGTAGAAT+GGG | - | chr7_2:67021012-67021031 | Msa1070700:three_prime_UTR | 40.0% | |
| AAGCTCGAGTAATCTCATAG+AGG | + | chr7_2:67021125-67021144 | None:intergenic | 40.0% | |
| !! | TGATTTTAGCACGCATGTCT+CGG | + | chr7_2:67021179-67021198 | None:intergenic | 40.0% |
| ! | CCTAATTTGGGATGGAAAGA+AGG | + | chr7_2:67021306-67021325 | None:intergenic | 40.0% |
| CCTTCTTTCCATCCCAAATT+AGG | - | chr7_2:67021303-67021322 | Msa1070700:CDS | 40.0% | |
| ! | ATCATGTTTGTTGGTGCTCA+AGG | - | chr7_2:67021339-67021358 | Msa1070700:CDS | 40.0% |
| ! | CTAACATCCCTTGTTATGGA+AGG | - | chr7_2:67021569-67021588 | Msa1070700:intron | 40.0% |
| GGGATTCAATGGTATACCAA+AGG | + | chr7_2:67021775-67021794 | None:intergenic | 40.0% | |
| GTAGTAATGTTTCAGGGAAC+TGG | + | chr7_2:67021796-67021815 | None:intergenic | 40.0% | |
| CAAAGGGGTAGTAATGTTTC+AGG | + | chr7_2:67021803-67021822 | None:intergenic | 40.0% | |
| ! | ATTCTCACGGAAGTGAGTTT+TGG | - | chr7_2:67021869-67021888 | Msa1070700:intron | 40.0% |
| TGAGAGTGGGAAGTTATAGT+TGG | + | chr7_2:67022044-67022063 | None:intergenic | 40.0% | |
| GATGACCCCTAGGAAAAATA+AGG | + | chr7_2:67022095-67022114 | None:intergenic | 40.0% | |
| GTGTAGCTATAGATGAATGG+AGG | + | chr7_2:67022335-67022354 | None:intergenic | 40.0% | |
| CATCTATAGCTACACAGAGT+CGG | - | chr7_2:67022340-67022359 | Msa1070700:intron | 40.0% | |
| CAAAATTGCTGTGAAAGGTG+TGG | - | chr7_2:67022370-67022389 | Msa1070700:intron | 40.0% | |
| TAATTGTTGATGTGAGTGGG+GGG | - | chr7_2:67022423-67022442 | Msa1070700:intron | 40.0% | |
| ! | TGATCATCGTAGTCTTAAGC+AGG | - | chr7_2:67022644-67022663 | Msa1070700:intron | 40.0% |
| AACACTCTGTGTAAATGCTG+TGG | + | chr7_2:67022670-67022689 | None:intergenic | 40.0% | |
| TAAAATGGATGGCTATGCCA+TGG | - | chr7_2:67022713-67022732 | Msa1070700:intron | 40.0% | |
| AAAATGGATGGCTATGCCAT+GGG | - | chr7_2:67022714-67022733 | Msa1070700:intron | 40.0% | |
| CATAGGAACTGGTGAACATA+TGG | - | chr7_2:67022949-67022968 | Msa1070700:CDS | 40.0% | |
| ! | CCGTTTGTTAGTCGTCTATT+AGG | - | chr7_2:67022998-67023017 | Msa1070700:intron | 40.0% |
| TGTTAGTCGTCTATTAGGCA+TGG | - | chr7_2:67023003-67023022 | Msa1070700:intron | 40.0% | |
| ACTCTGACTGAGACATTCTA+AGG | - | chr7_2:67023149-67023168 | Msa1070700:CDS | 40.0% | |
| CTCTGACTGAGACATTCTAA+GGG | - | chr7_2:67023150-67023169 | Msa1070700:CDS | 40.0% | |
| TCCTATTTCCTATCGGGTGT+CGG | + | chr7_2:67020906-67020925 | None:intergenic | 45.0% | |
| !! | AGAATGGGTCTCGCTGATTT+AGG | - | chr7_2:67021027-67021046 | Msa1070700:three_prime_UTR | 45.0% |
| GTCCGTCAAACACAACTTGT+TGG | + | chr7_2:67021260-67021279 | None:intergenic | 45.0% | |
| !! | TGACGGACTCTGCAAATTGT+TGG | - | chr7_2:67021272-67021291 | Msa1070700:exon | 45.0% |
| TTCAGGGAACTGGGATTCAA+TGG | + | chr7_2:67021786-67021805 | None:intergenic | 45.0% | |
| AGTTGCAATGAGGTGAGAGT+GGG | + | chr7_2:67022057-67022076 | None:intergenic | 45.0% | |
| TAGTTGCAATGAGGTGAGAG+TGG | + | chr7_2:67022058-67022077 | None:intergenic | 45.0% | |
| AGACTAAACAGATGACCCCT+AGG | + | chr7_2:67022105-67022124 | None:intergenic | 45.0% | |
| TGTTGCAGCAACAAAGAGTC+CGG | - | chr7_2:67022919-67022938 | Msa1070700:CDS | 45.0% | |
| AAGAGTCCGGCCATATTCAT+AGG | - | chr7_2:67022932-67022951 | Msa1070700:CDS | 45.0% | |
| CCAGTTCCTATGAATATGGC+CGG | + | chr7_2:67022941-67022960 | None:intergenic | 45.0% | |
| GTCTATTAGGCATGGATGAC+TGG | - | chr7_2:67023011-67023030 | Msa1070700:intron | 45.0% | |
| CCTATTTCCTATCGGGTGTC+GGG | + | chr7_2:67020905-67020924 | None:intergenic | 50.0% | |
| !! | ATGGGTCTCGCTGATTTAGG+AGG | - | chr7_2:67021030-67021049 | Msa1070700:three_prime_UTR | 50.0% |
| !! | TGGGTCTCGCTGATTTAGGA+GGG | - | chr7_2:67021031-67021050 | Msa1070700:three_prime_UTR | 50.0% |
| TCTCATAGAGGCAACGCTTG+CGG | + | chr7_2:67021113-67021132 | None:intergenic | 50.0% | |
| CGCATGTCTCGGATGAGTTT+GGG | + | chr7_2:67021168-67021187 | None:intergenic | 50.0% | |
| ACGCATGTCTCGGATGAGTT+TGG | + | chr7_2:67021169-67021188 | None:intergenic | 50.0% | |
| ! | GAAAGGTGTGGACAGATGCA+AGG | - | chr7_2:67022382-67022401 | Msa1070700:intron | 50.0% |
| CCGGCCATATTCATAGGAAC+TGG | - | chr7_2:67022938-67022957 | Msa1070700:CDS | 50.0% | |
| !!! | GGCAGGTTTTGAGGCAATTC+AGG | + | chr7_2:67023067-67023086 | None:intergenic | 50.0% |
| TCAAGCAAGTGGTGCAACGA+TGG | + | chr7_2:67023130-67023149 | None:intergenic | 50.0% | |
| CTCAGTCAGAGTCAAGCAAG+TGG | + | chr7_2:67023141-67023160 | None:intergenic | 50.0% | |
| !! | TTTCCTATCGGGTGTCGGGT+CGG | + | chr7_2:67020901-67020920 | None:intergenic | 55.0% |
| CCCGACACCCGATAGGAAAT+AGG | - | chr7_2:67020902-67020921 | Msa1070700:three_prime_UTR | 55.0% | |
| AGGTGTGGACAGATGCAAGG+AGG | - | chr7_2:67022385-67022404 | Msa1070700:intron | 55.0% | |
| ATGGATGGCTATGCCATGGG+TGG | - | chr7_2:67022717-67022736 | Msa1070700:intron | 55.0% | |
| GCTAAGAGAACCACCACCCA+TGG | + | chr7_2:67022733-67022752 | None:intergenic | 55.0% | |
| GATGGAGGGAAAAACGCACG+TGG | + | chr7_2:67023112-67023131 | None:intergenic | 55.0% | |
| GCAAGTGGTGCAACGATGGA+GGG | + | chr7_2:67023126-67023145 | None:intergenic | 55.0% | |
| AGCAAGTGGTGCAACGATGG+AGG | + | chr7_2:67023127-67023146 | None:intergenic | 55.0% | |
| ATACCGACCCGACACCCGAT+AGG | - | chr7_2:67020895-67020914 | Msa1070700:three_prime_UTR | 60.0% | |
| GATGGCTATGCCATGGGTGG+TGG | - | chr7_2:67022720-67022739 | Msa1070700:intron | 60.0% | |
| GGAGGGAAAAACGCACGTGG+AGG | + | chr7_2:67023109-67023128 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 67020895 | 67023547 | 67020895 | ID=Msa1070700;Name=Msa1070700 |
| chr7_2 | mRNA | 67020895 | 67023547 | 67020895 | ID=Msa1070700-mRNA-1;Parent=Msa1070700;Name=Msa1070700-mRNA-1;_AED=0.37;_eAED=0.37;_QI=135|1|1|1|1|1|5|388|347 |
| chr7_2 | exon | 67020895 | 67021523 | 67020895 | ID=Msa1070700-mRNA-1:exon:14482;Parent=Msa1070700-mRNA-1 |
| chr7_2 | exon | 67021688 | 67021851 | 67021688 | ID=Msa1070700-mRNA-1:exon:14481;Parent=Msa1070700-mRNA-1 |
| chr7_2 | exon | 67021940 | 67022093 | 67021940 | ID=Msa1070700-mRNA-1:exon:14480;Parent=Msa1070700-mRNA-1 |
| chr7_2 | exon | 67022852 | 67023005 | 67022852 | ID=Msa1070700-mRNA-1:exon:14479;Parent=Msa1070700-mRNA-1 |
| chr7_2 | exon | 67023082 | 67023547 | 67023082 | ID=Msa1070700-mRNA-1:exon:14478;Parent=Msa1070700-mRNA-1 |
| chr7_2 | five_prime_UTR | 67023413 | 67023547 | 67023413 | ID=Msa1070700-mRNA-1:five_prime_utr;Parent=Msa1070700-mRNA-1 |
| chr7_2 | CDS | 67023082 | 67023412 | 67023082 | ID=Msa1070700-mRNA-1:cds;Parent=Msa1070700-mRNA-1 |
| chr7_2 | CDS | 67022852 | 67023005 | 67022852 | ID=Msa1070700-mRNA-1:cds;Parent=Msa1070700-mRNA-1 |
| chr7_2 | CDS | 67021940 | 67022093 | 67021940 | ID=Msa1070700-mRNA-1:cds;Parent=Msa1070700-mRNA-1 |
| chr7_2 | CDS | 67021688 | 67021851 | 67021688 | ID=Msa1070700-mRNA-1:cds;Parent=Msa1070700-mRNA-1 |
| chr7_2 | CDS | 67021283 | 67021523 | 67021283 | ID=Msa1070700-mRNA-1:cds;Parent=Msa1070700-mRNA-1 |
| chr7_2 | three_prime_UTR | 67020895 | 67021282 | 67020895 | ID=Msa1070700-mRNA-1:three_prime_utr;Parent=Msa1070700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
