AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1042660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1042660 MtrunA17_Chr7g0254541 97.799 318 7 0 1 318 1 318 0.0 647
Msa1042660 MtrunA17_Chr4g0022101 61.215 214 82 1 105 317 19 232 3.83e-91 271
Msa1042660 MtrunA17_Chr8g0335681 55.328 244 93 3 81 317 26 260 3.85e-89 267
Msa1042660 MtrunA17_Chr7g0250291 54.008 237 108 1 81 317 29 264 4.91e-82 249
Msa1042660 MtrunA17_Chr3g0122601 57.277 213 90 1 106 317 48 260 2.35e-76 234
Msa1042660 MtrunA17_Chr0c29g0494021 53.933 89 41 0 229 317 1 89 1.05e-23 92.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1042660 AT3G03610.1 70.370 324 86 2 1 317 1 321 1.62e-170 476
Msa1042660 AT3G03610.3 70.370 324 86 2 1 317 1 321 1.62e-170 476
Msa1042660 AT3G03610.2 70.370 324 86 2 1 317 1 321 1.62e-170 476
Msa1042660 AT3G03610.4 70.370 324 86 2 1 317 13 333 2.04e-170 476
Msa1042660 AT1G03620.12 56.863 255 100 4 70 317 44 295 2.20e-94 282
Msa1042660 AT1G03620.3 59.149 235 91 2 84 317 1 231 2.67e-94 279
Msa1042660 AT1G03620.6 59.149 235 91 2 84 317 1 231 2.67e-94 279
Msa1042660 AT1G03620.2 59.149 235 91 2 84 317 1 231 2.67e-94 279
Msa1042660 AT1G03620.8 58.824 238 93 2 81 317 30 263 3.68e-94 280
Msa1042660 AT1G03620.10 58.824 238 93 2 81 317 30 263 3.68e-94 280
Msa1042660 AT1G03620.9 58.824 238 93 2 81 317 30 263 3.68e-94 280
Msa1042660 AT1G03620.1 58.824 238 93 2 81 317 30 263 3.68e-94 280
Msa1042660 AT1G03620.7 58.824 238 93 2 81 317 30 263 3.68e-94 280
Msa1042660 AT1G03620.4 58.824 238 93 2 81 317 30 263 3.68e-94 280
Msa1042660 AT1G03620.5 58.824 238 93 2 81 317 30 263 3.68e-94 280
Msa1042660 AT1G03620.11 58.824 238 93 2 81 317 30 263 3.68e-94 280
Msa1042660 AT1G03620.13 58.824 238 93 2 81 317 30 263 3.68e-94 280
Msa1042660 AT3G60260.3 57.083 240 98 2 80 317 6 242 1.50e-91 273
Msa1042660 AT3G60260.2 57.500 240 95 3 81 317 29 264 1.56e-91 273
Msa1042660 AT3G60260.4 57.500 240 95 3 81 317 29 264 1.56e-91 273
Msa1042660 AT3G60260.1 57.500 240 95 3 81 317 29 264 1.56e-91 273
Msa1042660 AT1G67400.1 59.615 208 84 0 110 317 73 280 7.63e-89 267
Msa1042660 AT2G44770.1 55.696 237 104 1 81 317 29 264 8.27e-88 264
Msa1042660 AT3G43400.1 62.590 139 48 1 152 290 73 207 5.11e-55 178

Find 83 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAAGATTATTCTGATATT+TGG 0.132675 7_1:-80620465 None:intergenic
CTAACAAATGCTTAAATAAA+AGG 0.136455 7_1:-80620503 None:intergenic
CGTTTCACTCGTTGAAATTC+AGG 0.193695 7_1:+80615244 Msa1042660:five_prime_UTR
TTTGCAGCAAACATTGTTCT+AGG 0.245670 7_1:+80617011 Msa1042660:intron
CAGGAACATTTGGATACTTC+TGG 0.260450 7_1:+80615791 Msa1042660:CDS
ACGAGTGAAACGAATCTCTT+TGG 0.304602 7_1:-80615233 None:intergenic
TTCATTGAATGAACCGTTGC+TGG 0.321817 7_1:+80615820 Msa1042660:CDS
ATCAGATTGTTGGAAGGAAA+TGG 0.322781 7_1:+80618672 Msa1042660:CDS
AGCAAAGCGTGCTACATATA+TGG 0.332900 7_1:+80620103 Msa1042660:CDS
CATGTAAATCACAAGTGAAA+TGG 0.357229 7_1:+80620437 Msa1042660:three_prime_UTR
ATGTAAATCACAAGTGAAAT+GGG 0.362888 7_1:+80620438 Msa1042660:three_prime_UTR
TGGAAAACGGCAGGAACATT+TGG 0.381041 7_1:+80615781 Msa1042660:CDS
ACCATGGTTTGCAGGGGTGG+AGG 0.391694 7_1:+80619148 Msa1042660:intron
CTCCACTTAAATCAGATTGT+TGG 0.392141 7_1:+80618662 Msa1042660:CDS
ATACTATAATTCTTTACTAT+AGG 0.396867 7_1:-80615709 None:intergenic
CGGCTTGAAGTTCCCTTTGA+CGG 0.402080 7_1:+80617874 Msa1042660:CDS
TAACAAATGCTTAAATAAAA+GGG 0.404789 7_1:-80620502 None:intergenic
GCAAACATTGTTCTAGGGTC+TGG 0.406999 7_1:+80617017 Msa1042660:intron
TTCGAACCTCATTGCGCAAT+GGG 0.413507 7_1:+80616037 Msa1042660:CDS
CCATGGTTTGCAGGGGTGGA+GGG 0.415346 7_1:+80619149 Msa1042660:intron
TTGATTCCAGCTACTGCAAA+TGG 0.423995 7_1:-80619392 None:intergenic
ATTTATGTTGGTGCAGATGC+TGG 0.425464 7_1:+80619421 Msa1042660:CDS
GAAAGAAGGCGCAAATTCAT+TGG 0.426457 7_1:+80616003 Msa1042660:CDS
GAATACTTTACATACACTTA+AGG 0.426614 7_1:-80620391 None:intergenic
TTGCATTGCCTTTCAAATGA+TGG 0.429352 7_1:+80620067 Msa1042660:CDS
ACACACCTAAAATCTGTTGA+TGG 0.432758 7_1:-80618712 None:intergenic
TCAGATTGTTGGAAGGAAAT+GGG 0.433239 7_1:+80618673 Msa1042660:CDS
TTCCAACAATCTGATTTAAG+TGG 0.437679 7_1:-80618664 None:intergenic
GCGCAATGGGCACAGTGGTT+AGG 0.448913 7_1:+80616050 Msa1042660:CDS
GTTGTTCCATCTTCTTCGTC+GGG 0.460134 7_1:+80619990 Msa1042660:intron
ATCTCTATACATACCTGCAC+AGG 0.463215 7_1:-80617122 None:intergenic
AGTTGTTCCATCTTCTTCGT+CGG 0.478166 7_1:+80619989 Msa1042660:intron
CTTGTTTGTGCAATAATCGC+TGG 0.486929 7_1:-80619343 None:intergenic
GCTGCTTGAGGAGGATGAAA+TGG 0.495909 7_1:+80620028 Msa1042660:CDS
TTCCATCGACATCCCCGTGA+TGG 0.495966 7_1:-80615763 None:intergenic
CAGATGCTGGATCTTCAATC+AGG 0.501555 7_1:+80619434 Msa1042660:CDS
GAATATCCATTTGCAGTAGC+TGG 0.503288 7_1:+80619386 Msa1042660:CDS
CATATTCCCGACGAAGAAGA+TGG 0.508986 7_1:-80619996 None:intergenic
CTCCAGTATAAAAGATATAC+CGG 0.509227 7_1:+80620291 Msa1042660:CDS
TTGCAGCAAACATTGTTCTA+GGG 0.514573 7_1:+80617012 Msa1042660:intron
AGTGGAGGAAGCTCTCGGTC+AGG 0.522963 7_1:-80618646 None:intergenic
TATGTACGCTTGAAGATTTG+TGG 0.524001 7_1:+80615970 Msa1042660:CDS
AATCAATATCTCATTTATGT+TGG 0.524266 7_1:+80619409 Msa1042660:CDS
CGATTATTGCACAAACAAGA+TGG 0.527326 7_1:+80619347 Msa1042660:CDS
TCCAACACTTAGCCCTGTGC+AGG 0.527434 7_1:+80617109 Msa1042660:CDS
ACGGGGATGTCGATGGAAAA+CGG 0.534153 7_1:+80615768 Msa1042660:CDS
CAACAATCTGATTTAAGTGG+AGG 0.536607 7_1:-80618661 None:intergenic
TGCACAGGGCTAAGTGTTGG+AGG 0.541071 7_1:-80617107 None:intergenic
CTCCATCACGGGGATGTCGA+TGG 0.541121 7_1:+80615761 Msa1042660:CDS
TTTCGAACCTCATTGCGCAA+TGG 0.542371 7_1:+80616036 Msa1042660:CDS
AACAGCTCAAACGTGTGCTG+TGG 0.546422 7_1:-80615054 None:intergenic
ACCTGCACAGGGCTAAGTGT+TGG 0.548439 7_1:-80617110 None:intergenic
ATGGATATTCCCACTCTGCT+CGG 0.549193 7_1:-80619373 None:intergenic
TTACTTGCAAAACAATAGGA+TGG 0.554335 7_1:+80617082 Msa1042660:CDS
CACACCTAAAATCTGTTGAT+GGG 0.557506 7_1:-80618711 None:intergenic
TGAGGAGAAGACTCCATCAC+GGG 0.558881 7_1:+80615750 Msa1042660:CDS
CATCTCAACATGTTGTGAGC+CGG 0.561847 7_1:-80620310 None:intergenic
TCATTGAATGAACCGTTGCT+GGG 0.564464 7_1:+80615821 Msa1042660:CDS
CTGAGCATCCATCATTTGAA+AGG 0.566308 7_1:-80620075 None:intergenic
GACTGAGAAACTTAAAGCAA+CGG 0.567027 7_1:+80617854 Msa1042660:CDS
ATGTACGCTTGAAGATTTGT+GGG 0.575791 7_1:+80615971 Msa1042660:CDS
TGGAAGGAAATGGGATGGCA+AGG 0.585634 7_1:+80618682 Msa1042660:CDS
GGATGTCGATGGAAAACGGC+AGG 0.585718 7_1:+80615772 Msa1042660:CDS
AAAATAAAGAAATAAATGAA+AGG 0.593271 7_1:-80615108 None:intergenic
GTGGGATGATGAGAGAAAGA+AGG 0.593292 7_1:+80615989 Msa1042660:CDS
ACAGCTCAAACGTGTGCTGT+GGG 0.595203 7_1:-80615053 None:intergenic
AACAAATGCTTAAATAAAAG+GGG 0.595384 7_1:-80620501 None:intergenic
TGATTATATTGAGAGTAAGA+AGG 0.599715 7_1:+80615850 Msa1042660:CDS
ATTTAAGTGGAGGAAGCTCT+CGG 0.606705 7_1:-80618651 None:intergenic
ACTTAAATCAGATTGTTGGA+AGG 0.607130 7_1:+80618666 Msa1042660:CDS
AGATGGAATCCGAGCAGAGT+GGG 0.614159 7_1:+80619364 Msa1042660:CDS
TGTAAATCACAAGTGAAATG+GGG 0.618313 7_1:+80620439 Msa1042660:three_prime_UTR
TAATCATCACCTCCCAGCAA+CGG 0.628970 7_1:-80615833 None:intergenic
ACTGTGCCCATTGCGCAATG+AGG 0.645478 7_1:-80616043 None:intergenic
ATTGTTGGAAGGAAATGGGA+TGG 0.650850 7_1:+80618677 Msa1042660:CDS
GTAAATCACAAGTGAAATGG+GGG 0.654503 7_1:+80620440 Msa1042660:three_prime_UTR
TTGAGGAGAAGACTCCATCA+CGG 0.656992 7_1:+80615749 Msa1042660:CDS
TTCAAATGATGGATGCTCAG+TGG 0.679437 7_1:+80620078 Msa1042660:CDS
TCTCTATACATACCTGCACA+GGG 0.703300 7_1:-80617121 None:intergenic
GAGGAGAAGACTCCATCACG+GGG 0.729277 7_1:+80615751 Msa1042660:CDS
AAGATGGAATCCGAGCAGAG+TGG 0.735731 7_1:+80619363 Msa1042660:CDS
TCATTGCGCAATGGGCACAG+TGG 0.737416 7_1:+80616045 Msa1042660:CDS
TTGAATGAACCGTTGCTGGG+AGG 0.740209 7_1:+80615824 Msa1042660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+GGG - chr7_1:80617965-80617984 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG - chr7_1:80617966-80617985 None:intergenic 0.0%
!! AAAATAAAGAAATAAATGAA+AGG - chr7_1:80615111-80615130 None:intergenic 10.0%
!!! CAATTTTAAACAATTTTTTA+GGG - chr7_1:80620707-80620726 None:intergenic 10.0%
!!! AATAACTGAATTTTTCAAAA+GGG - chr7_1:80615391-80615410 None:intergenic 15.0%
!!! AAATAACTGAATTTTTCAAA+AGG - chr7_1:80615392-80615411 None:intergenic 15.0%
!! ATACTATAATTCTTTACTAT+AGG - chr7_1:80615712-80615731 None:intergenic 15.0%
!! TAAGAATTGAATAAAAATCA+TGG - chr7_1:80616839-80616858 None:intergenic 15.0%
!! ATATATATAAAGACAAATGT+CGG - chr7_1:80617954-80617973 None:intergenic 15.0%
!!! TATTTTTAATATCTGAATTG+TGG + chr7_1:80618364-80618383 Msa1042660:intron 15.0%
!!! ATTTTTAATATCTGAATTGT+GGG + chr7_1:80618365-80618384 Msa1042660:intron 15.0%
!!! TGTTTAATTGTTTTACTTTA+AGG + chr7_1:80618732-80618751 Msa1042660:intron 15.0%
!! AGAAATATTAAATGTATCTT+AGG - chr7_1:80619874-80619893 None:intergenic 15.0%
!!! AAAATTTTGCTATTTTCTTT+AGG + chr7_1:80620213-80620232 Msa1042660:intron 15.0%
!!! AAAATTTTCTAACTACAAAA+TGG - chr7_1:80620370-80620389 None:intergenic 15.0%
!! TAACAAATGCTTAAATAAAA+GGG - chr7_1:80620505-80620524 None:intergenic 15.0%
!!! CCAATTTTAAACAATTTTTT+AGG - chr7_1:80620708-80620727 None:intergenic 15.0%
!!! CCTAAAAAATTGTTTAAAAT+TGG + chr7_1:80620705-80620724 Msa1042660:intron 15.0%
!! GAAGTAACAAACAAAAATTA+GGG - chr7_1:80615206-80615225 None:intergenic 20.0%
!! TTCAAATCAAGAAAAACAAA+GGG - chr7_1:80615282-80615301 None:intergenic 20.0%
!! ATTCAAATCAAGAAAAACAA+AGG - chr7_1:80615283-80615302 None:intergenic 20.0%
!!! GTTTTTCTTGATTTGAATTT+CGG + chr7_1:80615285-80615304 Msa1042660:intron 20.0%
!! AATTTATTGAGTAATTGAAC+AGG + chr7_1:80615437-80615456 Msa1042660:intron 20.0%
!! AAACTAACTGAATTTCAAAA+GGG - chr7_1:80615464-80615483 None:intergenic 20.0%
!! TGTTTATCAAAATCTGAAAA+TGG + chr7_1:80615523-80615542 Msa1042660:intron 20.0%
!!! AAATATATTAAAGTGTTAGC+TGG + chr7_1:80615574-80615593 Msa1042660:intron 20.0%
!!! TGTATTTTTTTGACTTGTAT+AGG + chr7_1:80615682-80615701 Msa1042660:intron 20.0%
!! TATTAGTGTACTACATATTA+GGG + chr7_1:80616494-80616513 Msa1042660:intron 20.0%
!! TCAAAATGACAAAAAAATTG+TGG - chr7_1:80616726-80616745 None:intergenic 20.0%
!! AAATAAGAAGAAAATGCAAA+TGG + chr7_1:80616937-80616956 Msa1042660:intron 20.0%
!! GTTAAACTTAAAGTTGAAAT+TGG - chr7_1:80617195-80617214 None:intergenic 20.0%
!!! ATCAATTGTATTTTCAGATA+GGG - chr7_1:80617217-80617236 None:intergenic 20.0%
!!! ATATCATTTTCAAAAGACAA+AGG - chr7_1:80617315-80617334 None:intergenic 20.0%
!!! CTTTTGATTATAAATATCAC+AGG - chr7_1:80617590-80617609 None:intergenic 20.0%
!!! GAACAATCAATTTTAAATTG+TGG + chr7_1:80617619-80617638 Msa1042660:intron 20.0%
!! GATAATTATTGTTTGATATG+AGG - chr7_1:80617666-80617685 None:intergenic 20.0%
!! TATTTCTTTCTTTCTTTCTT+AGG + chr7_1:80617825-80617844 Msa1042660:intron 20.0%
!! AAATGCATTAAATACATACT+TGG - chr7_1:80617915-80617934 None:intergenic 20.0%
!!! TTTATTTATTTCTTTGTTGC+AGG + chr7_1:80618591-80618610 Msa1042660:intron 20.0%
!!! AAGTATTCTTTAGAAATACT+TGG + chr7_1:80618983-80619002 Msa1042660:intron 20.0%
!! TAATTTCAAAAAAACAGAGT+TGG - chr7_1:80619107-80619126 None:intergenic 20.0%
!!! CTGTTTTTTTGAAATTATGA+AGG + chr7_1:80619110-80619129 Msa1042660:intron 20.0%
!! TATACATACAAATGCAAATA+CGG - chr7_1:80619234-80619253 None:intergenic 20.0%
!! TTTAATTACTAAGCACATTA+TGG - chr7_1:80619266-80619285 None:intergenic 20.0%
!! TAATGTGCTTAGTAATTAAA+TGG + chr7_1:80619266-80619285 Msa1042660:intron 20.0%
!! AATCAATATCTCATTTATGT+TGG + chr7_1:80619409-80619428 Msa1042660:CDS 20.0%
!!! GTGTTATTATGTTTTTAGAT+TGG - chr7_1:80619607-80619626 None:intergenic 20.0%
!!! TACATTTAATATTTCTGTAG+CGG + chr7_1:80619878-80619897 Msa1042660:intron 20.0%
!!! ATGATTTTACATGAAAAATG+AGG - chr7_1:80619947-80619966 None:intergenic 20.0%
!! AACAAATGCTTAAATAAAAG+GGG - chr7_1:80620504-80620523 None:intergenic 20.0%
!! CTAACAAATGCTTAAATAAA+AGG - chr7_1:80620506-80620525 None:intergenic 20.0%
!! TCACAAAAGTTGTTAAAAAT+TGG - chr7_1:80620588-80620607 None:intergenic 20.0%
!! AAAATTGTAATTGTTGAAAG+AGG - chr7_1:80620747-80620766 None:intergenic 20.0%
! CGAAGTAACAAACAAAAATT+AGG - chr7_1:80615207-80615226 None:intergenic 25.0%
! GATTTGAATTTCGGTTTATT+CGG + chr7_1:80615294-80615313 Msa1042660:intron 25.0%
! GGTTAAATTTGTCAACTTTA+GGG + chr7_1:80615345-80615364 Msa1042660:intron 25.0%
! CAAACTAACTGAATTTCAAA+AGG - chr7_1:80615465-80615484 None:intergenic 25.0%
! TAATGTCTTCAAAAACATTG+AGG + chr7_1:80615732-80615751 Msa1042660:exon 25.0%
! TGATTATATTGAGAGTAAGA+AGG + chr7_1:80615850-80615869 Msa1042660:CDS 25.0%
!!! AATCGTCGTTATTTTGTATT+TGG + chr7_1:80615878-80615897 Msa1042660:intron 25.0%
! TAGTGAAAAACAATGTTAGA+TGG + chr7_1:80616161-80616180 Msa1042660:intron 25.0%
!! TTTTCCGTTAGTAATAGTTA+TGG + chr7_1:80616224-80616243 Msa1042660:intron 25.0%
! AAAAGAATCATTCTTAGGAT+TGG + chr7_1:80616353-80616372 Msa1042660:intron 25.0%
! GTATTAGTGTACTACATATT+AGG + chr7_1:80616493-80616512 Msa1042660:intron 25.0%
!!! ATTGTTTTGCAAGTAAAAAC+CGG - chr7_1:80617078-80617097 None:intergenic 25.0%
!! GTTTTTACTTGCAAAACAAT+AGG + chr7_1:80617078-80617097 Msa1042660:CDS 25.0%
!! TGAAATTGGTTACATGATTT+TGG - chr7_1:80617181-80617200 None:intergenic 25.0%
!! GATCAATTGTATTTTCAGAT+AGG - chr7_1:80617218-80617237 None:intergenic 25.0%
!!! AACACTTACTTGATAATGAT+AGG + chr7_1:80617368-80617387 Msa1042660:intron 25.0%
! TAATGATAGGATATTATCAC+TGG + chr7_1:80617381-80617400 Msa1042660:intron 25.0%
!! GGAGTTTGATGATATATATT+TGG + chr7_1:80617486-80617505 Msa1042660:intron 25.0%
!! GAAAACAACGAGTAATTTTA+TGG - chr7_1:80617528-80617547 None:intergenic 25.0%
! ATAAAAGACACCTTCATAAA+AGG + chr7_1:80618148-80618167 Msa1042660:intron 25.0%
! TATAACAAAATGGTATCAAG+AGG - chr7_1:80618292-80618311 None:intergenic 25.0%
!! GACATGTATAGCAATTTTAT+TGG - chr7_1:80618447-80618466 None:intergenic 25.0%
!!! ATTGTTTTACTTTAAGGAGA+TGG + chr7_1:80618738-80618757 Msa1042660:intron 25.0%
!!! TTGTTTTACTTTAAGGAGAT+GGG + chr7_1:80618739-80618758 Msa1042660:intron 25.0%
!!! AGGATTCATTGACTTAATAA+TGG + chr7_1:80618817-80618836 Msa1042660:intron 25.0%
!!! GGATTCATTGACTTAATAAT+GGG + chr7_1:80618818-80618837 Msa1042660:intron 25.0%
! GAATACTTGTGACATATATA+TGG - chr7_1:80618971-80618990 None:intergenic 25.0%
! ACTAAAAGTTTCATCAAACT+TGG + chr7_1:80619066-80619085 Msa1042660:intron 25.0%
! CTAAAAGTTTCATCAAACTT+GGG + chr7_1:80619067-80619086 Msa1042660:intron 25.0%
!! TTTCAACCATTATTTTCACT+CGG - chr7_1:80619630-80619649 None:intergenic 25.0%
! AATAATGGTTGAAATCAAGT+TGG + chr7_1:80619636-80619655 Msa1042660:intron 25.0%
! CCAAACATAATAAATGAATG+TGG - chr7_1:80619712-80619731 None:intergenic 25.0%
! CCACATTCATTTATTATGTT+TGG + chr7_1:80619709-80619728 Msa1042660:intron 25.0%
! ATTAAACTGTGTTTGTTCAT+TGG + chr7_1:80620144-80620163 Msa1042660:intron 25.0%
! TTATTAGCATTATTCTGTGA+TGG + chr7_1:80620176-80620195 Msa1042660:intron 25.0%
! GAATACTTTACATACACTTA+AGG - chr7_1:80620394-80620413 None:intergenic 25.0%
! ATGTAAATCACAAGTGAAAT+GGG + chr7_1:80620438-80620457 Msa1042660:three_prime_UTR 25.0%
! CAGAAGATTATTCTGATATT+TGG - chr7_1:80620468-80620487 None:intergenic 25.0%
!! AAGTTTATGTTTTCAACAAG+AGG + chr7_1:80620546-80620565 Msa1042660:intron 25.0%
! AAAAGGAAGAAAGAGAATAA+AGG - chr7_1:80620637-80620656 None:intergenic 25.0%
! ATAACAATAGAGAGAGAAAA+AGG - chr7_1:80620654-80620673 None:intergenic 25.0%
!! TTGTTATTGTCCAATAAGAA+TGG + chr7_1:80620667-80620686 Msa1042660:intron 25.0%
GGGTTAAATTTGTCAACTTT+AGG + chr7_1:80615344-80615363 Msa1042660:intron 30.0%
TTGATAAACACCAAACCATA+GGG - chr7_1:80615513-80615532 None:intergenic 30.0%
TTTGATAAACACCAAACCAT+AGG - chr7_1:80615514-80615533 None:intergenic 30.0%
! TTCTTGAACTTGATGGTTAT+GGG + chr7_1:80615648-80615667 Msa1042660:intron 30.0%
!! GTCGTTATTTTGTATTTGGA+GGG + chr7_1:80615882-80615901 Msa1042660:intron 30.0%
CGAATAAAATCCTATTCCAA+TGG + chr7_1:80616249-80616268 Msa1042660:intron 30.0%
CATAAGACTTCAGATTCATA+GGG - chr7_1:80616318-80616337 None:intergenic 30.0%
ACATAAGACTTCAGATTCAT+AGG - chr7_1:80616319-80616338 None:intergenic 30.0%
AATGACAAAAAAATTGTGGC+TGG - chr7_1:80616722-80616741 None:intergenic 30.0%
TTTCACAAGCTACATAAATG+AGG - chr7_1:80616865-80616884 None:intergenic 30.0%
! TATGTAGCTTGTGAAAAATC+CGG + chr7_1:80616869-80616888 Msa1042660:intron 30.0%
! CTATTTTCTTCATTGTTGAC+TGG + chr7_1:80616909-80616928 Msa1042660:intron 30.0%
TTACTTGCAAAACAATAGGA+TGG + chr7_1:80617082-80617101 Msa1042660:CDS 30.0%
! CATTTTCAAAAGACAAAGGA+TGG - chr7_1:80617311-80617330 None:intergenic 30.0%
CACGTGATCTTTAGTTAAAA+AGG - chr7_1:80617553-80617572 None:intergenic 30.0%
AAATGTCGGTAATGTGATTA+GGG - chr7_1:80617940-80617959 None:intergenic 30.0%
! TTTTATCAAGTCACACCTTA+AGG + chr7_1:80618033-80618052 Msa1042660:intron 30.0%
AAAGTGAAAATCACACCTTA+AGG - chr7_1:80618051-80618070 None:intergenic 30.0%
!! AAAGACACCAACTTACTTTT+AGG - chr7_1:80618103-80618122 None:intergenic 30.0%
! ATAGAAGACACCTTTTATGA+AGG - chr7_1:80618161-80618180 None:intergenic 30.0%
! AGAGCATCACTATAACAAAA+TGG - chr7_1:80618302-80618321 None:intergenic 30.0%
TAATATCTGAATTGTGGGTA+CGG + chr7_1:80618370-80618389 Msa1042660:intron 30.0%
! TCTTTTACAACTGTGGAAAT+TGG + chr7_1:80618618-80618637 Msa1042660:CDS 30.0%
TTCCAACAATCTGATTTAAG+TGG - chr7_1:80618667-80618686 None:intergenic 30.0%
ACTTAAATCAGATTGTTGGA+AGG + chr7_1:80618666-80618685 Msa1042660:CDS 30.0%
!! TGTTTTACTTTAAGGAGATG+GGG + chr7_1:80618740-80618759 Msa1042660:intron 30.0%
TACTGTAAGACCATTAAGTA+AGG + chr7_1:80618797-80618816 Msa1042660:intron 30.0%
GTCAATGAATCCTTACTTAA+TGG - chr7_1:80618810-80618829 None:intergenic 30.0%
!! TTCATTGACTTAATAATGGG+AGG + chr7_1:80618821-80618840 Msa1042660:intron 30.0%
GATGTATGTCAAACCTATAA+GGG - chr7_1:80618865-80618884 None:intergenic 30.0%
AGATGTATGTCAAACCTATA+AGG - chr7_1:80618866-80618885 None:intergenic 30.0%
ACATACATCTACTTGTTTGA+TGG + chr7_1:80618876-80618895 Msa1042660:intron 30.0%
!! CTTGTTTGATGGTTTGATTT+TGG + chr7_1:80618887-80618906 Msa1042660:intron 30.0%
!!! TGGTTTGATTTTGGTTCTTT+AGG + chr7_1:80618896-80618915 Msa1042660:intron 30.0%
!!! GGTTTGATTTTGGTTCTTTA+GGG + chr7_1:80618897-80618916 Msa1042660:intron 30.0%
!!! GTTTGATTTTGGTTCTTTAG+GGG + chr7_1:80618898-80618917 Msa1042660:intron 30.0%
GACATATATATGGTACATGT+GGG - chr7_1:80618961-80618980 None:intergenic 30.0%
TGACATATATATGGTACATG+TGG - chr7_1:80618962-80618981 None:intergenic 30.0%
! AGTCTTTATAAAGAGTATGC+AGG - chr7_1:80619045-80619064 None:intergenic 30.0%
AATTCTCTTGAGAAATTCAG+TGG + chr7_1:80619464-80619483 Msa1042660:intron 30.0%
! TTCAACCATTATTTTCACTC+GGG - chr7_1:80619629-80619648 None:intergenic 30.0%
! ATCAACACTTGCTGAAAATA+AGG - chr7_1:80619910-80619929 None:intergenic 30.0%
CTCCAGTATAAAAGATATAC+CGG + chr7_1:80620291-80620310 Msa1042660:CDS 30.0%
!! TGCTCATTTTAGTGTAACAT+TGG + chr7_1:80620338-80620357 Msa1042660:three_prime_UTR 30.0%
CATGTAAATCACAAGTGAAA+TGG + chr7_1:80620437-80620456 Msa1042660:three_prime_UTR 30.0%
TGTAAATCACAAGTGAAATG+GGG + chr7_1:80620439-80620458 Msa1042660:three_prime_UTR 30.0%
TTATTGTCCAATAAGAATGG+AGG + chr7_1:80620670-80620689 Msa1042660:intron 30.0%
!!! CTTTTTTCCTCCATTCTTAT+TGG - chr7_1:80620680-80620699 None:intergenic 30.0%
! TACACTTTTCGTGCTTCATA+AGG - chr7_1:80615148-80615167 None:intergenic 35.0%
GAATTTCGGTTTATTCGGTT+TGG + chr7_1:80615299-80615318 Msa1042660:intron 35.0%
TTTCAGTTGAGAGGTGAAAA+TGG + chr7_1:80615322-80615341 Msa1042660:intron 35.0%
TTCAGTTGAGAGGTGAAAAT+GGG + chr7_1:80615323-80615342 Msa1042660:intron 35.0%
!! TGTTGATTTGAGTAACCCTA+TGG + chr7_1:80615495-80615514 Msa1042660:intron 35.0%
ATTTGAGTAACCCTATGGTT+TGG + chr7_1:80615500-80615519 Msa1042660:intron 35.0%
GGAGTGATGAATGAAAAGAA+TGG + chr7_1:80615595-80615614 Msa1042660:intron 35.0%
GATGATGTTCTTGAACTTGA+TGG + chr7_1:80615641-80615660 Msa1042660:intron 35.0%
! GTTCTTGAACTTGATGGTTA+TGG + chr7_1:80615647-80615666 Msa1042660:intron 35.0%
!! CGTCGTTATTTTGTATTTGG+AGG + chr7_1:80615881-80615900 Msa1042660:intron 35.0%
TATGTACGCTTGAAGATTTG+TGG + chr7_1:80615970-80615989 Msa1042660:CDS 35.0%
ATGTACGCTTGAAGATTTGT+GGG + chr7_1:80615971-80615990 Msa1042660:CDS 35.0%
AGGTATGTTTACGATTGAGT+TGG + chr7_1:80616070-80616089 Msa1042660:intron 35.0%
TAGTTCATACGTTCTATGCT+TGG + chr7_1:80616189-80616208 Msa1042660:intron 35.0%
CGCTCCATAACTATTACTAA+CGG - chr7_1:80616231-80616250 None:intergenic 35.0%
! CTGAAGTCTTATGTTTAGAG+TGG + chr7_1:80616325-80616344 Msa1042660:intron 35.0%
! AAGTCTTATGTTTAGAGTGG+CGG + chr7_1:80616328-80616347 Msa1042660:intron 35.0%
CGGCTAAAAGAATCATTCTT+AGG + chr7_1:80616348-80616367 Msa1042660:intron 35.0%
GTATTAGTGGAGTGAATTGA+TGG + chr7_1:80616407-80616426 Msa1042660:intron 35.0%
! AATTGGCACTGAACTTTATG+AGG + chr7_1:80616445-80616464 Msa1042660:intron 35.0%
! ATTGGCACTGAACTTTATGA+GGG + chr7_1:80616446-80616465 Msa1042660:intron 35.0%
ATTAGGGTTGAATCTCACTA+AGG + chr7_1:80616510-80616529 Msa1042660:intron 35.0%
! GGCTGGCTATACAAAATTTA+GGG - chr7_1:80616705-80616724 None:intergenic 35.0%
! TGGCTGGCTATACAAAATTT+AGG - chr7_1:80616706-80616725 None:intergenic 35.0%
! ATGTAGCTTGTGAAAAATCC+GGG + chr7_1:80616870-80616889 Msa1042660:intron 35.0%
AGAGATATATACGTAAGACC+CGG - chr7_1:80616891-80616910 None:intergenic 35.0%
! TAGAACAATGTTTGCTGCAA+AGG - chr7_1:80617012-80617031 None:intergenic 35.0%
TTTGCAGCAAACATTGTTCT+AGG + chr7_1:80617011-80617030 Msa1042660:intron 35.0%
TTGCAGCAAACATTGTTCTA+GGG + chr7_1:80617012-80617031 Msa1042660:intron 35.0%
! TGTGATGGAGTTCAATTCAA+AGG - chr7_1:80617275-80617294 None:intergenic 35.0%
TTTGAAAATGATATGCTGCC+AGG + chr7_1:80617321-80617340 Msa1042660:intron 35.0%
TTGAAAATGATATGCTGCCA+GGG + chr7_1:80617322-80617341 Msa1042660:intron 35.0%
ATCACAAATCAGAATATCCC+TGG - chr7_1:80617342-80617361 None:intergenic 35.0%
! TACCTCACTGTATTGTGTTT+TGG + chr7_1:80617433-80617452 Msa1042660:intron 35.0%
TTCCAAAACACAATACAGTG+AGG - chr7_1:80617438-80617457 None:intergenic 35.0%
!! TCACTGTATTGTGTTTTGGA+AGG + chr7_1:80617437-80617456 Msa1042660:intron 35.0%
! GAACTTCTGTAGTCTCTTTT+TGG + chr7_1:80617739-80617758 Msa1042660:intron 35.0%
TCTCAATAATCTGCTACATG+TGG + chr7_1:80617784-80617803 Msa1042660:intron 35.0%
GACTGAGAAACTTAAAGCAA+CGG + chr7_1:80617854-80617873 Msa1042660:CDS 35.0%
!!! TCTGTTTTAGAACCGTCAAA+GGG - chr7_1:80617889-80617908 None:intergenic 35.0%
!!! ATCTGTTTTAGAACCGTCAA+AGG - chr7_1:80617890-80617909 None:intergenic 35.0%
CAAATGTCGGTAATGTGATT+AGG - chr7_1:80617941-80617960 None:intergenic 35.0%
TGATAAAAGACACCACCAAA+GGG - chr7_1:80618021-80618040 None:intergenic 35.0%
TTGATAAAAGACACCACCAA+AGG - chr7_1:80618022-80618041 None:intergenic 35.0%
ACACCTTCCTAAAAGTAAGT+TGG + chr7_1:80618093-80618112 Msa1042660:intron 35.0%
!! ACACCAACTTACTTTTAGGA+AGG - chr7_1:80618099-80618118 None:intergenic 35.0%
AAATTGAACAGGCAGAATAC+AGG - chr7_1:80618249-80618268 None:intergenic 35.0%
AAATGACAGCGAAATTGAAC+AGG - chr7_1:80618260-80618279 None:intergenic 35.0%
AATATCTGAATTGTGGGTAC+GGG + chr7_1:80618371-80618390 Msa1042660:intron 35.0%
CGGGGTTGTCAATTTATAAA+TGG + chr7_1:80618390-80618409 Msa1042660:intron 35.0%
ATAAATGGAATGTCCTTCCA+TGG + chr7_1:80618405-80618424 Msa1042660:intron 35.0%
CCTTTAAATTCATCCATGGA+AGG - chr7_1:80618421-80618440 None:intergenic 35.0%
CCTTCCATGGATGAATTTAA+AGG + chr7_1:80618418-80618437 Msa1042660:intron 35.0%
GTCACCTTTAAATTCATCCA+TGG - chr7_1:80618425-80618444 None:intergenic 35.0%
AGATGCTCAAAAGCAAGATA+TGG - chr7_1:80618496-80618515 None:intergenic 35.0%
CAACAATCTGATTTAAGTGG+AGG - chr7_1:80618664-80618683 None:intergenic 35.0%
CTCCACTTAAATCAGATTGT+TGG + chr7_1:80618662-80618681 Msa1042660:CDS 35.0%
ATCAGATTGTTGGAAGGAAA+TGG + chr7_1:80618672-80618691 Msa1042660:CDS 35.0%
TCAGATTGTTGGAAGGAAAT+GGG + chr7_1:80618673-80618692 Msa1042660:CDS 35.0%
CACACCTAAAATCTGTTGAT+GGG - chr7_1:80618714-80618733 None:intergenic 35.0%
ACACACCTAAAATCTGTTGA+TGG - chr7_1:80618715-80618734 None:intergenic 35.0%
CTCTAACCTTATCCATATTC+AGG - chr7_1:80618771-80618790 None:intergenic 35.0%
CAAAATAGTCTGACCCTTAT+AGG + chr7_1:80618849-80618868 Msa1042660:intron 35.0%
ATACGGTAGAAGAAACTTAC+TGG - chr7_1:80619217-80619236 None:intergenic 35.0%
CGATTATTGCACAAACAAGA+TGG + chr7_1:80619347-80619366 Msa1042660:CDS 35.0%
TAACACCCGAGTGAAAATAA+TGG + chr7_1:80619621-80619640 Msa1042660:intron 35.0%
AGGGAACTGTATAGATAGTT+TGG + chr7_1:80619778-80619797 Msa1042660:intron 35.0%
GGGAACTGTATAGATAGTTT+GGG + chr7_1:80619779-80619798 Msa1042660:intron 35.0%
! CTAGTTAGATAAGGTTTGGT+TGG - chr7_1:80619837-80619856 None:intergenic 35.0%
CAACCAAACCTTATCTAACT+AGG + chr7_1:80619835-80619854 Msa1042660:intron 35.0%
TTGCATTGCCTTTCAAATGA+TGG + chr7_1:80620067-80620086 Msa1042660:CDS 35.0%
! CGGTATATCTTTTATACTGG+AGG - chr7_1:80620293-80620312 None:intergenic 35.0%
! AGCCGGTATATCTTTTATAC+TGG - chr7_1:80620296-80620315 None:intergenic 35.0%
GTAAATCACAAGTGAAATGG+GGG + chr7_1:80620440-80620459 Msa1042660:three_prime_UTR 35.0%
ACGAGTGAAACGAATCTCTT+TGG - chr7_1:80615236-80615255 None:intergenic 40.0%
CGTTTCACTCGTTGAAATTC+AGG + chr7_1:80615244-80615263 Msa1042660:five_prime_UTR 40.0%
TCAGTTGAGAGGTGAAAATG+GGG + chr7_1:80615324-80615343 Msa1042660:intron 40.0%
CAGGAACATTTGGATACTTC+TGG + chr7_1:80615791-80615810 Msa1042660:CDS 40.0%
TTCATTGAATGAACCGTTGC+TGG + chr7_1:80615820-80615839 Msa1042660:CDS 40.0%
TCATTGAATGAACCGTTGCT+GGG + chr7_1:80615821-80615840 Msa1042660:CDS 40.0%
! GAAAGAAGGCGCAAATTCAT+TGG + chr7_1:80616003-80616022 Msa1042660:CDS 40.0%
!! CGTTCTATGCTTGGTTTTTG+TGG + chr7_1:80616198-80616217 Msa1042660:intron 40.0%
AGTGGCAAATCCATTGGAAT+AGG - chr7_1:80616262-80616281 None:intergenic 40.0%
ATTTGCCACTCTTGCAAACA+AGG + chr7_1:80616272-80616291 Msa1042660:intron 40.0%
! ACTTTCCTTGTTTGCAAGAG+TGG - chr7_1:80616280-80616299 None:intergenic 40.0%
! GTATGATCAAGCACGTCTTT+TGG + chr7_1:80616375-80616394 Msa1042660:intron 40.0%
TTAGTGGAGTGAATTGATGG+AGG + chr7_1:80616410-80616429 Msa1042660:intron 40.0%
! TTTATGAGGGTGCAATCACA+AGG + chr7_1:80616459-80616478 Msa1042660:intron 40.0%
! TGCAAATGGCATGCTTTTAG+TGG + chr7_1:80616951-80616970 Msa1042660:intron 40.0%
! CTTTTATCGCATTCTACTGC+CGG + chr7_1:80617056-80617075 Msa1042660:CDS 40.0%
TCTCTATACATACCTGCACA+GGG - chr7_1:80617124-80617143 None:intergenic 40.0%
ATCTCTATACATACCTGCAC+AGG - chr7_1:80617125-80617144 None:intergenic 40.0%
ACAAAGGATGGTTGAGTTAC+GGG - chr7_1:80617299-80617318 None:intergenic 40.0%
GACAAAGGATGGTTGAGTTA+CGG - chr7_1:80617300-80617319 None:intergenic 40.0%
AGACTACAGAAGTTCAGCAA+AGG - chr7_1:80617734-80617753 None:intergenic 40.0%
!!! CTGTAGTCTCTTTTTGGAGT+TGG + chr7_1:80617745-80617764 Msa1042660:intron 40.0%
TTATGTTACAAGCCACCCTT+TGG + chr7_1:80618003-80618022 Msa1042660:intron 40.0%
ATATCTGAATTGTGGGTACG+GGG + chr7_1:80618372-80618391 Msa1042660:intron 40.0%
ATTTAAGTGGAGGAAGCTCT+CGG - chr7_1:80618654-80618673 None:intergenic 40.0%
ATTGTTGGAAGGAAATGGGA+TGG + chr7_1:80618677-80618696 Msa1042660:CDS 40.0%
! CAGACCCATCAACAGATTTT+AGG + chr7_1:80618707-80618726 Msa1042660:CDS 40.0%
! TTTACTTTAAGGAGATGGGG+AGG + chr7_1:80618743-80618762 Msa1042660:intron 40.0%
! TTACTTTAAGGAGATGGGGA+GGG + chr7_1:80618744-80618763 Msa1042660:intron 40.0%
CCCAAAAACTAGCTCAAGAA+GGG - chr7_1:80619019-80619038 None:intergenic 40.0%
!!! CCCTTCTTGAGCTAGTTTTT+GGG + chr7_1:80619016-80619035 Msa1042660:intron 40.0%
GAGCTCATTAGATCTAACCA+TGG + chr7_1:80619132-80619151 Msa1042660:intron 40.0%
! TAGATCTAACCATGGTTTGC+AGG + chr7_1:80619140-80619159 Msa1042660:intron 40.0%
! AGATCTAACCATGGTTTGCA+GGG + chr7_1:80619141-80619160 Msa1042660:intron 40.0%
ACTTCTGCGCAAAAAAGATG+AGG - chr7_1:80619192-80619211 None:intergenic 40.0%
TAGCCTACCACATTTCTACT+TGG + chr7_1:80619301-80619320 Msa1042660:intron 40.0%
TTGCCAAGTAGAAATGTGGT+AGG - chr7_1:80619307-80619326 None:intergenic 40.0%
TTTCTACTTGGCAATGCCAT+AGG + chr7_1:80619313-80619332 Msa1042660:intron 40.0%
CTTGTTTGTGCAATAATCGC+TGG - chr7_1:80619346-80619365 None:intergenic 40.0%
GAATATCCATTTGCAGTAGC+TGG + chr7_1:80619386-80619405 Msa1042660:CDS 40.0%
TTGATTCCAGCTACTGCAAA+TGG - chr7_1:80619395-80619414 None:intergenic 40.0%
ATTTATGTTGGTGCAGATGC+TGG + chr7_1:80619421-80619440 Msa1042660:CDS 40.0%
GACCATATCTCATCCAATGT+GGG - chr7_1:80619516-80619535 None:intergenic 40.0%
AGACCATATCTCATCCAATG+TGG - chr7_1:80619517-80619536 None:intergenic 40.0%
AAAACAAGCGTACGAGATAG+AGG - chr7_1:80619567-80619586 None:intergenic 40.0%
!!! CTTGTTTTGTTACGATGAGC+TGG + chr7_1:80619579-80619598 Msa1042660:intron 40.0%
GACTCGATTGTACTTTGCAA+TGG - chr7_1:80619739-80619758 None:intergenic 40.0%
CTATCTATACAGTTCCCTTG+AGG - chr7_1:80619776-80619795 None:intergenic 40.0%
CCACCTAGTTAGATAAGGTT+TGG - chr7_1:80619841-80619860 None:intergenic 40.0%
CCAAACCTTATCTAACTAGG+TGG + chr7_1:80619838-80619857 Msa1042660:intron 40.0%
GTTCTCCACCTAGTTAGATA+AGG - chr7_1:80619846-80619865 None:intergenic 40.0%
AGAAGATGGAACAACTGCAA+CGG - chr7_1:80619985-80620004 None:intergenic 40.0%
AGTTGTTCCATCTTCTTCGT+CGG + chr7_1:80619989-80620008 Msa1042660:intron 40.0%
! CGTCGGGAATATGTTTTCTA+CGG + chr7_1:80620006-80620025 Msa1042660:CDS 40.0%
CTGAGCATCCATCATTTGAA+AGG - chr7_1:80620078-80620097 None:intergenic 40.0%
!! TTCAAATGATGGATGCTCAG+TGG + chr7_1:80620078-80620097 Msa1042660:CDS 40.0%
AGCAAAGCGTGCTACATATA+TGG + chr7_1:80620103-80620122 Msa1042660:CDS 40.0%
!! TCGGTTTGGTTTCAGTTGAG+AGG + chr7_1:80615313-80615332 Msa1042660:intron 45.0%
TTGAGGAGAAGACTCCATCA+CGG + chr7_1:80615749-80615768 Msa1042660:CDS 45.0%
TGGAAAACGGCAGGAACATT+TGG + chr7_1:80615781-80615800 Msa1042660:CDS 45.0%
TAATCATCACCTCCCAGCAA+CGG - chr7_1:80615836-80615855 None:intergenic 45.0%
GTGGGATGATGAGAGAAAGA+AGG + chr7_1:80615989-80616008 Msa1042660:CDS 45.0%
TTTCGAACCTCATTGCGCAA+TGG + chr7_1:80616036-80616055 Msa1042660:CDS 45.0%
TTCGAACCTCATTGCGCAAT+GGG + chr7_1:80616037-80616056 Msa1042660:CDS 45.0%
TGCAAGAGTGGCAAATCCAT+TGG - chr7_1:80616268-80616287 None:intergenic 45.0%
!!! AAGCACGTCTTTTGGAGCTT+GGG + chr7_1:80616383-80616402 Msa1042660:intron 45.0%
!! TTGGAGCTTGGGAGTATTAG+TGG + chr7_1:80616394-80616413 Msa1042660:intron 45.0%
TGGAGTGAATTGATGGAGGA+GGG + chr7_1:80616414-80616433 Msa1042660:intron 45.0%
GGAGGAGGGTGATTGAAAAT+TGG + chr7_1:80616428-80616447 Msa1042660:intron 45.0%
!! GCAAACATTGTTCTAGGGTC+TGG + chr7_1:80617017-80617036 Msa1042660:intron 45.0%
CAAAGGATGGTTGAGTTACG+GGG - chr7_1:80617298-80617317 None:intergenic 45.0%
! CAGTGAGGTATTCGAGAAAC+TGG - chr7_1:80617423-80617442 None:intergenic 45.0%
!!! TGTGTTTTGGAAGGCATCAG+TGG + chr7_1:80617446-80617465 Msa1042660:intron 45.0%
!!! GTGTTTTGGAAGGCATCAGT+GGG + chr7_1:80617447-80617466 Msa1042660:intron 45.0%
GTGGGCAACGGATATTTCTT+TGG + chr7_1:80617465-80617484 Msa1042660:intron 45.0%
TAAAAGACACCACCAAAGGG+TGG - chr7_1:80618018-80618037 None:intergenic 45.0%
! AGGACGCTCTTTTACAACTG+TGG + chr7_1:80618611-80618630 Msa1042660:intron 45.0%
! TACTTTAAGGAGATGGGGAG+GGG + chr7_1:80618745-80618764 Msa1042660:intron 45.0%
!!! GCCCTTCTTGAGCTAGTTTT+TGG + chr7_1:80619015-80619034 Msa1042660:intron 45.0%
GCCCAAAAACTAGCTCAAGA+AGG - chr7_1:80619020-80619039 None:intergenic 45.0%
! GATCTAACCATGGTTTGCAG+GGG + chr7_1:80619142-80619161 Msa1042660:intron 45.0%
GGCATTGCCAAGTAGAAATG+TGG - chr7_1:80619311-80619330 None:intergenic 45.0%
AATCGCTGGAATGAGACCTA+TGG - chr7_1:80619332-80619351 None:intergenic 45.0%
ATGGATATTCCCACTCTGCT+CGG - chr7_1:80619376-80619395 None:intergenic 45.0%
CAGATGCTGGATCTTCAATC+AGG + chr7_1:80619434-80619453 Msa1042660:CDS 45.0%
ACATGTTGAGAGTCCCACAT+TGG + chr7_1:80619500-80619519 Msa1042660:intron 45.0%
GTCCCACATTGGATGAGATA+TGG + chr7_1:80619511-80619530 Msa1042660:intron 45.0%
TGAAAGCCTGTTTGCCTCAA+GGG + chr7_1:80619759-80619778 Msa1042660:intron 45.0%
AAGATGGAACAACTGCAACG+GGG - chr7_1:80619983-80620002 None:intergenic 45.0%
GAAGATGGAACAACTGCAAC+GGG - chr7_1:80619984-80620003 None:intergenic 45.0%
GTTGTTCCATCTTCTTCGTC+GGG + chr7_1:80619990-80620009 Msa1042660:intron 45.0%
CATATTCCCGACGAAGAAGA+TGG - chr7_1:80619999-80620018 None:intergenic 45.0%
! ATGTTTTCTACGGCTGCTTG+AGG + chr7_1:80620016-80620035 Msa1042660:CDS 45.0%
CATCTCAACATGTTGTGAGC+CGG - chr7_1:80620313-80620332 None:intergenic 45.0%
!! TATATATATATATATGTATA+TGG + chr7_1:80617979-80617998 Msa1042660:intron 5.0%
!! ATATATATATATATGTATAT+GGG + chr7_1:80617980-80617999 Msa1042660:intron 5.0%
TGAGGAGAAGACTCCATCAC+GGG + chr7_1:80615750-80615769 Msa1042660:CDS 50.0%
ACGGGGATGTCGATGGAAAA+CGG + chr7_1:80615768-80615787 Msa1042660:CDS 50.0%
TTGAATGAACCGTTGCTGGG+AGG + chr7_1:80615824-80615843 Msa1042660:CDS 50.0%
!!! CAAGCACGTCTTTTGGAGCT+TGG + chr7_1:80616382-80616401 Msa1042660:intron 50.0%
GTGGAGTGAATTGATGGAGG+AGG + chr7_1:80616413-80616432 Msa1042660:intron 50.0%
! ATGAGGGTGCAATCACAAGG+TGG + chr7_1:80616462-80616481 Msa1042660:intron 50.0%
CGGCTTGAAGTTCCCTTTGA+CGG + chr7_1:80617874-80617893 Msa1042660:CDS 50.0%
TGTTACAAGCCACCCTTTGG+TGG + chr7_1:80618006-80618025 Msa1042660:intron 50.0%
TGGAAGGAAATGGGATGGCA+AGG + chr7_1:80618682-80618701 Msa1042660:CDS 50.0%
GAGGGGCCTGAATATGGATA+AGG + chr7_1:80618762-80618781 Msa1042660:intron 50.0%
AGCTCAAGAAGGGCGATGAT+TGG - chr7_1:80619009-80619028 None:intergenic 50.0%
AAGATGGAATCCGAGCAGAG+TGG + chr7_1:80619363-80619382 Msa1042660:CDS 50.0%
AGATGGAATCCGAGCAGAGT+GGG + chr7_1:80619364-80619383 Msa1042660:CDS 50.0%
CTGAAAGCCTGTTTGCCTCA+AGG + chr7_1:80619758-80619777 Msa1042660:intron 50.0%
ACAGTTCCCTTGAGGCAAAC+AGG - chr7_1:80619768-80619787 None:intergenic 50.0%
! TTTTCTACGGCTGCTTGAGG+AGG + chr7_1:80620019-80620038 Msa1042660:CDS 50.0%
GCTGCTTGAGGAGGATGAAA+TGG + chr7_1:80620028-80620047 Msa1042660:CDS 50.0%
GAGGAGAAGACTCCATCACG+GGG + chr7_1:80615751-80615770 Msa1042660:CDS 55.0%
TTCCATCGACATCCCCGTGA+TGG - chr7_1:80615766-80615785 None:intergenic 55.0%
GGATGTCGATGGAAAACGGC+AGG + chr7_1:80615772-80615791 Msa1042660:CDS 55.0%
ACTGTGCCCATTGCGCAATG+AGG - chr7_1:80616046-80616065 None:intergenic 55.0%
TCATTGCGCAATGGGCACAG+TGG + chr7_1:80616045-80616064 Msa1042660:CDS 55.0%
GGGTGCAATCACAAGGTGGT+TGG + chr7_1:80616466-80616485 Msa1042660:intron 55.0%
!! TGCACAGGGCTAAGTGTTGG+AGG - chr7_1:80617110-80617129 None:intergenic 55.0%
TCCAACACTTAGCCCTGTGC+AGG + chr7_1:80617109-80617128 Msa1042660:CDS 55.0%
ACCTGCACAGGGCTAAGTGT+TGG - chr7_1:80617113-80617132 None:intergenic 55.0%
GGTTGAGTTACGGGGTGTGA+TGG - chr7_1:80617290-80617309 None:intergenic 55.0%
!! TGGAAGGCATCAGTGGGCAA+CGG + chr7_1:80617453-80617472 Msa1042660:intron 55.0%
! CTAACCATGGTTTGCAGGGG+TGG + chr7_1:80619145-80619164 Msa1042660:intron 55.0%
CTCCATCACGGGGATGTCGA+TGG + chr7_1:80615761-80615780 Msa1042660:CDS 60.0%
GCGCAATGGGCACAGTGGTT+AGG + chr7_1:80616050-80616069 Msa1042660:CDS 60.0%
AGTGGAGGAAGCTCTCGGTC+AGG - chr7_1:80618649-80618668 None:intergenic 60.0%
GATGGGGAGGGGCCTGAATA+TGG + chr7_1:80618756-80618775 Msa1042660:intron 60.0%
! ACCATGGTTTGCAGGGGTGG+AGG + chr7_1:80619148-80619167 Msa1042660:intron 60.0%
! CCATGGTTTGCAGGGGTGGA+GGG + chr7_1:80619149-80619168 Msa1042660:intron 60.0%
CCCTCCACCCCTGCAAACCA+TGG - chr7_1:80619152-80619171 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 80615055 80620782 80615055 ID=Msa1042660;Name=Msa1042660
chr7_1 mRNA 80615055 80620782 80615055 ID=Msa1042660-mRNA-1;Parent=Msa1042660;Name=Msa1042660-mRNA-1;_AED=0.07;_eAED=0.07;_QI=241|1|1|1|0.8|0.63|11|257|318
chr7_1 exon 80615055 80615265 80615055 ID=Msa1042660-mRNA-1:exon:22017;Parent=Msa1042660-mRNA-1
chr7_1 exon 80615704 80615871 80615704 ID=Msa1042660-mRNA-1:exon:22018;Parent=Msa1042660-mRNA-1
chr7_1 exon 80615969 80616071 80615969 ID=Msa1042660-mRNA-1:exon:22019;Parent=Msa1042660-mRNA-1
chr7_1 exon 80617018 80617130 80617018 ID=Msa1042660-mRNA-1:exon:22020;Parent=Msa1042660-mRNA-1
chr7_1 exon 80617847 80617915 80617847 ID=Msa1042660-mRNA-1:exon:22021;Parent=Msa1042660-mRNA-1
chr7_1 exon 80618613 80618728 80618613 ID=Msa1042660-mRNA-1:exon:22022;Parent=Msa1042660-mRNA-1
chr7_1 exon 80619162 80619216 80619162 ID=Msa1042660-mRNA-1:exon:22023;Parent=Msa1042660-mRNA-1
chr7_1 exon 80619335 80619455 80619335 ID=Msa1042660-mRNA-1:exon:22024;Parent=Msa1042660-mRNA-1
chr7_1 exon 80619991 80620133 80619991 ID=Msa1042660-mRNA-1:exon:22025;Parent=Msa1042660-mRNA-1
chr7_1 exon 80620235 80620564 80620235 ID=Msa1042660-mRNA-1:exon:22026;Parent=Msa1042660-mRNA-1
chr7_1 exon 80620757 80620782 80620757 ID=Msa1042660-mRNA-1:exon:22027;Parent=Msa1042660-mRNA-1
chr7_1 five_prime_UTR 80615055 80615265 80615055 ID=Msa1042660-mRNA-1:five_prime_utr;Parent=Msa1042660-mRNA-1
chr7_1 five_prime_UTR 80615704 80615733 80615704 ID=Msa1042660-mRNA-1:five_prime_utr;Parent=Msa1042660-mRNA-1
chr7_1 CDS 80615734 80615871 80615734 ID=Msa1042660-mRNA-1:cds;Parent=Msa1042660-mRNA-1
chr7_1 CDS 80615969 80616071 80615969 ID=Msa1042660-mRNA-1:cds;Parent=Msa1042660-mRNA-1
chr7_1 CDS 80617018 80617130 80617018 ID=Msa1042660-mRNA-1:cds;Parent=Msa1042660-mRNA-1
chr7_1 CDS 80617847 80617915 80617847 ID=Msa1042660-mRNA-1:cds;Parent=Msa1042660-mRNA-1
chr7_1 CDS 80618613 80618728 80618613 ID=Msa1042660-mRNA-1:cds;Parent=Msa1042660-mRNA-1
chr7_1 CDS 80619162 80619216 80619162 ID=Msa1042660-mRNA-1:cds;Parent=Msa1042660-mRNA-1
chr7_1 CDS 80619335 80619455 80619335 ID=Msa1042660-mRNA-1:cds;Parent=Msa1042660-mRNA-1
chr7_1 CDS 80619991 80620133 80619991 ID=Msa1042660-mRNA-1:cds;Parent=Msa1042660-mRNA-1
chr7_1 CDS 80620235 80620333 80620235 ID=Msa1042660-mRNA-1:cds;Parent=Msa1042660-mRNA-1
chr7_1 three_prime_UTR 80620334 80620564 80620334 ID=Msa1042660-mRNA-1:three_prime_utr;Parent=Msa1042660-mRNA-1
chr7_1 three_prime_UTR 80620757 80620782 80620757 ID=Msa1042660-mRNA-1:three_prime_utr;Parent=Msa1042660-mRNA-1
Gene Sequence

>Msa1042660

ATGTCTTCAAAAACATTGAGGAGAAGACTCCATCACGGGGATGTCGATGGAAAACGGCAGGAACATTTGGATACTTCTGGATTAGATTCATTGAATGAACCGTTGCTGGGAGGTGATGATTATATTGAGAGTAAGAAGATATGTACGCTTGAAGATTTGTGGGATGATGAGAGAAAGAAGGCGCAAATTCATTGGACATTCTTATTTTCGAACCTCATTGCGCAATGGGCACAGTGGTTAGCAAACATTGTTCTAGGGTCTGGATCTCTTCTTAGTCGTCTTTTATCGCATTCTACTGCCGGTTTTTACTTGCAAAACAATAGGATGGTTCCTCCAACACTTAGCCCTGTGCAGGAAGAAAGACTGAGAAACTTAAAGCAACGGCTTGAAGTTCCCTTTGACGGTTCTAAAACAGATCACCAAGACGCTCTTTTACAACTGTGGAAATTGGCTTATCCTGACCGAGAGCTTCCTCCACTTAAATCAGATTGTTGGAAGGAAATGGGATGGCAAGGTTCAGACCCATCAACAGATTTTAGGGGTGGAGGGTTTATATCATTAGAGAACCTCATCTTTTTTGCGCAGAAGTATCCAGTCTCATTCCAGCGATTATTGCACAAACAAGATGGAATCCGAGCAGAGTGGGAATATCCATTTGCAGTAGCTGGAATCAATATCTCATTTATGTTGGTGCAGATGCTGGATCTTCAATCAGTTGTTCCATCTTCTTCGTCGGGAATATGTTTTCTACGGCTGCTTGAGGAGGATGAAATGGCATTTGATGTTCTTTTTTGCATTGCCTTTCAAATGATGGATGCTCAGTGGCTAGCAAAGCGTGCTACATATATGGAATTTAACGATGTTTTGAAGTCAACAAGAATACAATTAGAGCGCGAGCTTGCTCTTGAAGACACCTCCAGTATAAAAGATATACCGGCTCACAACATGTTGAGATGA

Protein sequence

>Msa1042660

MSSKTLRRRLHHGDVDGKRQEHLDTSGLDSLNEPLLGGDDYIESKKICTLEDLWDDERKKAQIHWTFLFSNLIAQWAQWLANIVLGSGSLLSRLLSHSTAGFYLQNNRMVPPTLSPVQEERLRNLKQRLEVPFDGSKTDHQDALLQLWKLAYPDRELPPLKSDCWKEMGWQGSDPSTDFRGGGFISLENLIFFAQKYPVSFQRLLHKQDGIRAEWEYPFAVAGINISFMLVQMLDLQSVVPSSSSGICFLRLLEEDEMAFDVLFCIAFQMMDAQWLAKRATYMEFNDVLKSTRIQLERELALEDTSSIKDIPAHNMLR*