AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1072900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1072900 MtrunA17_Chr7g0255701 93.498 323 4 3 1 306 1 323 0.0 607
Msa1072900 MtrunA17_Chr1g0198481 35.754 358 145 12 21 302 48 396 5.45e-46 160
Msa1072900 MtrunA17_Chr1g0198461 52.288 153 63 6 21 164 68 219 2.40e-37 139
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1072900 AT3G56680.1 48.534 307 129 8 21 306 24 322 4.36e-85 259
Msa1072900 AT2G40960.1 47.385 325 140 11 1 303 1 316 7.99e-77 238
Msa1072900 AT2G40960.2 47.385 325 140 11 1 303 1 316 7.99e-77 238
Msa1072900 AT3G10770.1 47.840 324 128 12 11 306 1 311 2.77e-70 221
Msa1072900 AT3G10770.2 47.222 324 122 12 11 306 1 303 1.73e-69 219
Msa1072900 AT5G05100.1 45.141 319 126 10 17 306 7 305 9.14e-68 214

Find 89 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATATTTCCAATGTAAAA+AGG 0.166426 7_2:-70153447 None:intergenic
TCTAACAACGATGTTGCTTC+TGG 0.187278 7_2:+70153720 Msa1072900:CDS
CAGCATTGTTCATAAATTTC+TGG 0.204149 7_2:-70155197 None:intergenic
ACCACGGGATACTTGCTTTC+AGG 0.210785 7_2:-70155363 None:intergenic
CAAACAATGGTTCAAGATAT+TGG 0.232345 7_2:+70155303 Msa1072900:CDS
GCAAATGAAGGTTGAGCTTT+TGG 0.265227 7_2:-70156460 None:intergenic
GTTCAAGATATTGGCTTAGA+TGG 0.302395 7_2:+70155312 Msa1072900:CDS
TTCAATCCTGGGGTACAAAA+AGG 0.312586 7_2:-70156574 None:intergenic
AATGAGGGAAAGGAATAATA+AGG 0.335513 7_2:-70153569 None:intergenic
TTCCTTTCCCTCATTCTTAG+AGG 0.344963 7_2:+70153577 Msa1072900:five_prime_UTR
CCAGGATTGAATCCGGCATC+TGG 0.345187 7_2:+70156586 Msa1072900:CDS
GCTCAAGCTTCACTTGGATA+TGG 0.375325 7_2:+70156526 Msa1072900:CDS
AGATGGACAGAGTAAAATTC+TGG 0.392158 7_2:+70155329 Msa1072900:CDS
CTAACAACGATGTTGCTTCT+GGG 0.405297 7_2:+70153721 Msa1072900:CDS
ATCAGCCTCTGCTGTTAACC+TGG 0.414771 7_2:+70156423 Msa1072900:CDS
TGTTGCTTCTGGGTTTGTTA+AGG 0.414998 7_2:+70153731 Msa1072900:CDS
CCCTTCTTCTTATCTCCGAC+TGG 0.419347 7_2:+70155248 Msa1072900:CDS
CATCGTGTTGCTCAACACTA+TGG 0.421269 7_2:+70155276 Msa1072900:CDS
CCATAGCTACGATCATAATC+TGG 0.422944 7_2:-70155768 None:intergenic
CCAGATGCCGGATTCAATCC+TGG 0.425232 7_2:-70156586 None:intergenic
TGGGTTTGTTAAGGAGTCAA+TGG 0.434010 7_2:+70153740 Msa1072900:CDS
GAATGAGCATACATCATTGT+AGG 0.437582 7_2:-70156637 None:intergenic
CCTCATAAAACTAGTTTGAA+TGG 0.441449 7_2:+70155462 Msa1072900:CDS
TCATTGTCCAACTGTTTAGC+AGG 0.448582 7_2:-70155402 None:intergenic
GGACTCATCATCGGGGTTGA+AGG 0.450195 7_2:-70156553 None:intergenic
AAAGAATTCTTCCCATCTGT+TGG 0.459105 7_2:-70155618 None:intergenic
TTGTAGGACTTGGCCATTGT+AGG 0.459952 7_2:-70156621 None:intergenic
GAGTTGCCATTATCAGAGAT+AGG 0.468549 7_2:+70155727 Msa1072900:CDS
TTGTACCCCAGGATTGAATC+CGG 0.472293 7_2:+70156579 Msa1072900:CDS
AAGAATTCTTCCCATCTGTT+GGG 0.474533 7_2:-70155617 None:intergenic
TTCCTTCCCTCTAAGAATGA+GGG 0.486448 7_2:-70153584 None:intergenic
TTTCCTTCCCTCTAAGAATG+AGG 0.486744 7_2:-70153585 None:intergenic
AGAGGAAGGAGGAGTATGAT+CGG 0.490303 7_2:+70155532 Msa1072900:CDS
TTCCCTCATTCTTAGAGGGA+AGG 0.500262 7_2:+70153582 Msa1072900:five_prime_UTR
TCTCTTCCACACTTCTCAGA+GGG 0.503169 7_2:-70155512 None:intergenic
AAGAACCATGGATTCATCGT+TGG 0.505075 7_2:+70153695 Msa1072900:exon
CAGATGCCGGATTCAATCCT+GGG 0.507037 7_2:-70156585 None:intergenic
CCACAAGCTCAAGCTTCACT+TGG 0.508990 7_2:+70156520 Msa1072900:CDS
CCAGATTATGATCGTAGCTA+TGG 0.509780 7_2:+70155768 Msa1072900:CDS
CTTCCCATCTGTTGGGACCA+TGG 0.514650 7_2:-70155610 None:intergenic
GCATACATCATTGTAGGACT+TGG 0.514708 7_2:-70156631 None:intergenic
TCATCCATGGTCCCAACAGA+TGG 0.519489 7_2:+70155606 Msa1072900:CDS
CAGGATTGAATCCGGCATCT+GGG 0.521389 7_2:+70156587 Msa1072900:CDS
CCAAGTGAAGCTTGAGCTTG+TGG 0.521619 7_2:-70156520 None:intergenic
GAGAAGTGTGGAAGAGAGGA+AGG 0.522947 7_2:+70155518 Msa1072900:CDS
CTCTCTTCCACACTTCTCAG+AGG 0.523726 7_2:-70155513 None:intergenic
ATCTGTTGGGACCATGGATG+AGG 0.524522 7_2:-70155604 None:intergenic
GAGGAAGGAGGAGTATGATC+GGG 0.524661 7_2:+70155533 Msa1072900:CDS
CTCTGAGAAGTGTGGAAGAG+AGG 0.524774 7_2:+70155514 Msa1072900:CDS
GTTTCATACGGAGCAAATGA+AGG 0.532517 7_2:-70156472 None:intergenic
TCCTTTCCCTCATTCTTAGA+GGG 0.535819 7_2:+70153578 Msa1072900:five_prime_UTR
GCCAGTCGGAGATAAGAAGA+AGG 0.539797 7_2:-70155249 None:intergenic
AAATCTTTCTGAATCAGCCA+TGG 0.544821 7_2:-70155676 None:intergenic
TTCAGTTGATACCTCATCCA+TGG 0.550395 7_2:+70155593 Msa1072900:intron
TCCCTCTAAGAATGAGGGAA+AGG 0.550797 7_2:-70153579 None:intergenic
AATCTTTCTGAATCAGCCAT+GGG 0.552116 7_2:-70155675 None:intergenic
CATTATCAGAGATAGGGAAA+AGG 0.556313 7_2:+70155734 Msa1072900:CDS
AAGTGTGGAAGAGAGGAAGG+AGG 0.557123 7_2:+70155521 Msa1072900:CDS
TGAAATACCTGCTAAACAGT+TGG 0.557642 7_2:+70155395 Msa1072900:CDS
ACTTTGTATCTTTAGTTCTG+CGG 0.558741 7_2:+70155160 Msa1072900:intron
TGTATCTTTAGTTCTGCGGA+TGG 0.560070 7_2:+70155164 Msa1072900:intron
TAAGCACCATCCCCAGATGC+CGG 0.560221 7_2:-70156598 None:intergenic
AGTTGCCATTATCAGAGATA+GGG 0.562784 7_2:+70155728 Msa1072900:CDS
TTGAATCCGGCATCTGGGGA+TGG 0.572223 7_2:+70156592 Msa1072900:CDS
TGATTAAAAGTAGTTTCATA+CGG 0.575270 7_2:-70156484 None:intergenic
AGAAACCAACGATGAATCCA+TGG 0.575372 7_2:-70153700 None:intergenic
AGGATTGAATCCGGCATCTG+GGG 0.586030 7_2:+70156588 Msa1072900:CDS
CATCCATGGTCCCAACAGAT+GGG 0.589398 7_2:+70155607 Msa1072900:CDS
GAGGGAAAGGAATAATAAGG+AGG 0.594577 7_2:-70153566 None:intergenic
ATTTCAGATAAGCGAACCAC+GGG 0.595439 7_2:-70155378 None:intergenic
TTGGCAAATTAAAAGGCACC+AGG 0.598139 7_2:-70156441 None:intergenic
AGGGAAAGGAATAATAAGGA+GGG 0.609509 7_2:-70153565 None:intergenic
CTCATCATCGGGGTTGAAGG+CGG 0.611755 7_2:-70156550 None:intergenic
GGGATGGTGCTTACCTACAA+TGG 0.618223 7_2:+70156608 Msa1072900:CDS
ATTATGATCGTAGCTATGGA+AGG 0.624886 7_2:+70155772 Msa1072900:CDS
AGGAAACCCTCTGAGAAGTG+TGG 0.625906 7_2:+70155506 Msa1072900:CDS
AGGCACCAGGTTAACAGCAG+AGG 0.634836 7_2:-70156428 None:intergenic
CCAGTCGGAGATAAGAAGAA+GGG 0.638620 7_2:-70155248 None:intergenic
ACACTATGGTATGCAAACAA+TGG 0.654903 7_2:+70155290 Msa1072900:CDS
CAACACGATGTGCAGCCAGT+CGG 0.657431 7_2:-70155263 None:intergenic
ACCTGAAAGCAAGTATCCCG+TGG 0.660921 7_2:+70155362 Msa1072900:CDS
ATCTTTCTGAATCAGCCATG+GGG 0.669707 7_2:-70155674 None:intergenic
TATTTCAGATAAGCGAACCA+CGG 0.680806 7_2:-70155379 None:intergenic
TGAAACTAGCAAAATCCCCA+TGG 0.683008 7_2:+70155659 Msa1072900:CDS
ACCGTACAAAGAAGATAATG+CGG 0.700433 7_2:+70153420 None:intergenic
GAAACTAACTGGTTAGACGA+TGG 0.703806 7_2:-70153800 None:intergenic
TCTCTGATAATGGCAACTCG+AGG 0.704401 7_2:-70155723 None:intergenic
TAACTGGTTAGACGATGGCG+AGG 0.708532 7_2:-70153795 None:intergenic
AGATGCCGGATTCAATCCTG+GGG 0.714738 7_2:-70156584 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATTTCCAATGTAAAAA+GGG - chr7_2:70153449-70153468 None:intergenic 15.0%
!! ATTATATTTCCAATGTAAAA+AGG - chr7_2:70153450-70153469 None:intergenic 15.0%
!!! TTATTTTTGTTGAATTTTCA+TGG + chr7_2:70153851-70153870 Msa1072900:intron 15.0%
!!! TATTTTTGTTGAATTTTCAT+GGG + chr7_2:70153852-70153871 Msa1072900:intron 15.0%
!! AACATGAAATTTGAATAAAT+TGG - chr7_2:70154156-70154175 None:intergenic 15.0%
!! AATTTATTCAAATTTCATGT+TGG + chr7_2:70154155-70154174 Msa1072900:intron 15.0%
!!! GTTTAATTTTTACACAAAAA+TGG - chr7_2:70154749-70154768 None:intergenic 15.0%
!! TTTGTGTAAAAATTAAACTT+AGG + chr7_2:70154751-70154770 Msa1072900:intron 15.0%
!!! ATCAAATTGAATTTTATTGT+TGG + chr7_2:70156380-70156399 Msa1072900:intron 15.0%
!!! TGGTTCTTCTTTTTTTTTTA+GGG - chr7_2:70153683-70153702 None:intergenic 20.0%
!!! ATGGTTCTTCTTTTTTTTTT+AGG - chr7_2:70153684-70153703 None:intergenic 20.0%
!! TAAAAAAAAAAGAAGAACCA+TGG + chr7_2:70153683-70153702 Msa1072900:exon 20.0%
!! ATCACTAAAAAAATCCAAAA+AGG - chr7_2:70153918-70153937 None:intergenic 20.0%
!!! TGTTAATTTGATGTTAAAGT+TGG + chr7_2:70154068-70154087 Msa1072900:intron 20.0%
!!! GTTAATTTGATGTTAAAGTT+GGG + chr7_2:70154069-70154088 Msa1072900:intron 20.0%
!! ATTATCTTCAAACAAACTTA+GGG - chr7_2:70154201-70154220 None:intergenic 20.0%
!! TATTATCTTCAAACAAACTT+AGG - chr7_2:70154202-70154221 None:intergenic 20.0%
!!! ATTTTTTTATCCTTTGATAG+AGG - chr7_2:70154226-70154245 None:intergenic 20.0%
!!! AAGTTTACAAACTATGTTTT+AGG + chr7_2:70154334-70154353 Msa1072900:intron 20.0%
!!! AGTTTACAAACTATGTTTTA+GGG + chr7_2:70154335-70154354 Msa1072900:intron 20.0%
!! AAAAAATTGTCATACAATCT+AGG + chr7_2:70155439-70155458 Msa1072900:CDS 20.0%
!! AATAACTATGTTTGCAATTA+CGG - chr7_2:70155833-70155852 None:intergenic 20.0%
!!! TAGTTATTTTGCTATTTTGT+TGG + chr7_2:70155845-70155864 Msa1072900:intron 20.0%
!!! AGTTATTTTGCTATTTTGTT+GGG + chr7_2:70155846-70155865 Msa1072900:intron 20.0%
!!! TTGTATTGGTTTAAACTTTA+AGG + chr7_2:70156069-70156088 Msa1072900:intron 20.0%
!!! TGTATTGGTTTAAACTTTAA+GGG + chr7_2:70156070-70156089 Msa1072900:intron 20.0%
!! TGATTAAAAGTAGTTTCATA+CGG - chr7_2:70156487-70156506 None:intergenic 20.0%
!!! TTTTTTTGTTTCACCCAAAA+GGG - chr7_2:70153659-70153678 None:intergenic 25.0%
!!! GGTTCTTCTTTTTTTTTTAG+GGG - chr7_2:70153682-70153701 None:intergenic 25.0%
!!! ATTTTGAAGAAGAAACTAAC+TGG - chr7_2:70153814-70153833 None:intergenic 25.0%
! AAGATAATATCCTCTATCAA+AGG + chr7_2:70154213-70154232 Msa1072900:intron 25.0%
!! GCAAAAAATAACAGTTTGTT+CGG - chr7_2:70154484-70154503 None:intergenic 25.0%
!! CGATTCATATTTGATAACAT+TGG + chr7_2:70154503-70154522 Msa1072900:intron 25.0%
!!! ATTTTTTTTACATAAGACCG+TGG + chr7_2:70154798-70154817 Msa1072900:intron 25.0%
! TTAGTATATTAGCATGAATC+AGG + chr7_2:70155111-70155130 Msa1072900:intron 25.0%
!!! TATGACAATTTTTTTCAGCT+CGG - chr7_2:70155433-70155452 None:intergenic 25.0%
! TGTAGTTTATGCATTTGTAT+TGG + chr7_2:70156055-70156074 Msa1072900:intron 25.0%
! TCAAATAAGTCAACCTAAAT+AGG - chr7_2:70156096-70156115 None:intergenic 25.0%
! ATAAGCTGAAAACAACTTAT+AGG - chr7_2:70156186-70156205 None:intergenic 25.0%
!! TTAAGGTATTTATCCTAACA+GGG + chr7_2:70156332-70156351 Msa1072900:intron 25.0%
!!! TGAAACTACTTTTAATCAGT+TGG + chr7_2:70156489-70156508 Msa1072900:CDS 25.0%
!!! GAAACTACTTTTAATCAGTT+GGG + chr7_2:70156490-70156509 Msa1072900:CDS 25.0%
TTTCTTCACCCAATCAAAAA+AGG + chr7_2:70153476-70153495 Msa1072900:five_prime_UTR 30.0%
TTCTTCACCCAATCAAAAAA+GGG + chr7_2:70153477-70153496 Msa1072900:five_prime_UTR 30.0%
!!! AACCAAACCCTTTTTTGATT+GGG - chr7_2:70153487-70153506 None:intergenic 30.0%
!!! AAACCAAACCCTTTTTTGAT+TGG - chr7_2:70153488-70153507 None:intergenic 30.0%
AATGAGGGAAAGGAATAATA+AGG - chr7_2:70153572-70153591 None:intergenic 30.0%
!!! TCTTTTTTGTTTTCCCCTTT+TGG + chr7_2:70153642-70153661 Msa1072900:five_prime_UTR 30.0%
!!! CTTTTTTGTTTTCCCCTTTT+GGG + chr7_2:70153643-70153662 Msa1072900:five_prime_UTR 30.0%
!!! TTTTTTGTTTCACCCAAAAG+GGG - chr7_2:70153658-70153677 None:intergenic 30.0%
!!! GTTTTTTTGTTTCACCCAAA+AGG - chr7_2:70153660-70153679 None:intergenic 30.0%
! ATTGCATAGATTTTGCATCA+AGG + chr7_2:70153948-70153967 Msa1072900:intron 30.0%
! TAGATTTTGCATCAAGGTTT+TGG + chr7_2:70153954-70153973 Msa1072900:intron 30.0%
! GTTTGGATTAGAATTTGTCT+AGG + chr7_2:70153976-70153995 Msa1072900:intron 30.0%
GAAATGAAATCATTGAAGCT+AGG + chr7_2:70154108-70154127 Msa1072900:intron 30.0%
ATTGAAGCTAGGTGTTAATT+GGG + chr7_2:70154119-70154138 Msa1072900:intron 30.0%
CATGAATTTGAATGTCTATG+CGG + chr7_2:70154258-70154277 Msa1072900:intron 30.0%
! TCTATGCGGTTGAATTTTAA+GGG + chr7_2:70154272-70154291 Msa1072900:intron 30.0%
ACACTTTATAGTACAAAGAG+TGG + chr7_2:70154411-70154430 Msa1072900:intron 30.0%
! ATAACATTGGTTGTTTACCA+TGG + chr7_2:70154516-70154535 Msa1072900:intron 30.0%
!! TTTTTAAGCCATGAAAAGCA+GGG - chr7_2:70154579-70154598 None:intergenic 30.0%
AAATTAAACTTAGGCATGTG+AGG + chr7_2:70154760-70154779 Msa1072900:intron 30.0%
!!! TTGTAATCTATTTTTACCCC+TGG + chr7_2:70154889-70154908 Msa1072900:intron 30.0%
!! ACTTTGTATCTTTAGTTCTG+CGG + chr7_2:70155160-70155179 Msa1072900:intron 30.0%
CAGCATTGTTCATAAATTTC+TGG - chr7_2:70155200-70155219 None:intergenic 30.0%
CAAACAATGGTTCAAGATAT+TGG + chr7_2:70155303-70155322 Msa1072900:CDS 30.0%
!!! CCATTCAAACTAGTTTTATG+AGG - chr7_2:70155465-70155484 None:intergenic 30.0%
! CCTCATAAAACTAGTTTGAA+TGG + chr7_2:70155462-70155481 Msa1072900:CDS 30.0%
!!! TCCTTTTTTTGAGGAATCAT+TGG - chr7_2:70155490-70155509 None:intergenic 30.0%
! GAAGAATTCTTTTATGAGCA+AGG + chr7_2:70155629-70155648 Msa1072900:CDS 30.0%
!!! GCTGATTCAGAAAGATTTTT+TGG + chr7_2:70155681-70155700 Msa1072900:CDS 30.0%
!!! AGAAAGATTTTTTGGTGTCA+GGG + chr7_2:70155689-70155708 Msa1072900:CDS 30.0%
! TAAACTTTAAGGGCCTATTT+AGG + chr7_2:70156080-70156099 Msa1072900:intron 30.0%
ATGCTATGAACACTTAGTTA+AGG + chr7_2:70156315-70156334 Msa1072900:intron 30.0%
! GTTAAGGTATTTATCCTAAC+AGG + chr7_2:70156331-70156350 Msa1072900:intron 30.0%
ATAAGCCAGCTATTATATCT+AGG - chr7_2:70156358-70156377 None:intergenic 30.0%
! TGAGCTTTTGGCAAATTAAA+AGG - chr7_2:70156451-70156470 None:intergenic 30.0%
AGGGAAAGGAATAATAAGGA+GGG - chr7_2:70153568-70153587 None:intergenic 35.0%
! TCATGGGTTTGCTTCAAAAT+TGG + chr7_2:70153868-70153887 Msa1072900:intron 35.0%
! TTGGTACTTTAGCTCGATTT+AGG + chr7_2:70153887-70153906 Msa1072900:intron 35.0%
!! CGATTTAGGTTTGACCTTTT+TGG + chr7_2:70153901-70153920 Msa1072900:intron 35.0%
!!! TTTGCATCAAGGTTTTGGTT+TGG + chr7_2:70153959-70153978 Msa1072900:intron 35.0%
CATTGAAGCTAGGTGTTAAT+TGG + chr7_2:70154118-70154137 Msa1072900:intron 35.0%
TTGAAGCTAGGTGTTAATTG+GGG + chr7_2:70154120-70154139 Msa1072900:intron 35.0%
GACATTCAAATTCATGGTCA+TGG - chr7_2:70154254-70154273 None:intergenic 35.0%
CGCATAGACATTCAAATTCA+TGG - chr7_2:70154260-70154279 None:intergenic 35.0%
! GTCTATGCGGTTGAATTTTA+AGG + chr7_2:70154271-70154290 Msa1072900:intron 35.0%
! GATTAGCTCGTAATGATGAA+GGG + chr7_2:70154294-70154313 Msa1072900:intron 35.0%
CAAGTTCCACTATAGCTATT+CGG - chr7_2:70154368-70154387 None:intergenic 35.0%
ATAAAGTGTATCGCCAACAA+TGG - chr7_2:70154400-70154419 None:intergenic 35.0%
TACAAAGAGTGGTCAAATAG+CGG + chr7_2:70154422-70154441 Msa1072900:intron 35.0%
AGTGCATCAATGATAAACCA+TGG - chr7_2:70154536-70154555 None:intergenic 35.0%
! TTTTAAGCCATGAAAAGCAG+GGG - chr7_2:70154578-70154597 None:intergenic 35.0%
!! CTTTTTAAGCCATGAAAAGC+AGG - chr7_2:70154580-70154599 None:intergenic 35.0%
TGTTGATGCAAAACATTGTC+TGG + chr7_2:70154631-70154650 Msa1072900:intron 35.0%
!!! CATTTTAACTTCCCCTTTTC+TGG + chr7_2:70155056-70155075 Msa1072900:intron 35.0%
ACCAAAATACAGCCAGAAAA+GGG - chr7_2:70155071-70155090 None:intergenic 35.0%
AACCAAAATACAGCCAGAAA+AGG - chr7_2:70155072-70155091 None:intergenic 35.0%
ACACTATGGTATGCAAACAA+TGG + chr7_2:70155290-70155309 Msa1072900:CDS 35.0%
!! GTTCAAGATATTGGCTTAGA+TGG + chr7_2:70155312-70155331 Msa1072900:CDS 35.0%
AGATGGACAGAGTAAAATTC+TGG + chr7_2:70155329-70155348 Msa1072900:CDS 35.0%
TATTTCAGATAAGCGAACCA+CGG - chr7_2:70155382-70155401 None:intergenic 35.0%
TGAAATACCTGCTAAACAGT+TGG + chr7_2:70155395-70155414 Msa1072900:CDS 35.0%
GCCAATGATTCCTCAAAAAA+AGG + chr7_2:70155486-70155505 Msa1072900:CDS 35.0%
AAGAATTCTTCCCATCTGTT+GGG - chr7_2:70155620-70155639 None:intergenic 35.0%
AAAGAATTCTTCCCATCTGT+TGG - chr7_2:70155621-70155640 None:intergenic 35.0%
AATCTTTCTGAATCAGCCAT+GGG - chr7_2:70155678-70155697 None:intergenic 35.0%
AAATCTTTCTGAATCAGCCA+TGG - chr7_2:70155679-70155698 None:intergenic 35.0%
!!! CAGAAAGATTTTTTGGTGTC+AGG + chr7_2:70155688-70155707 Msa1072900:CDS 35.0%
AGTTGCCATTATCAGAGATA+GGG + chr7_2:70155728-70155747 Msa1072900:CDS 35.0%
! CTTTTCCCTATCTCTGATAA+TGG - chr7_2:70155736-70155755 None:intergenic 35.0%
CATTATCAGAGATAGGGAAA+AGG + chr7_2:70155734-70155753 Msa1072900:CDS 35.0%
ATTATGATCGTAGCTATGGA+AGG + chr7_2:70155772-70155791 Msa1072900:CDS 35.0%
TCTGTGTTTGTGAGAGATAA+AGG + chr7_2:70155917-70155936 Msa1072900:intron 35.0%
TTGTGAGAGATAAAGGATGT+TGG + chr7_2:70155924-70155943 Msa1072900:intron 35.0%
TGTGAGAGATAAAGGATGTT+GGG + chr7_2:70155925-70155944 Msa1072900:intron 35.0%
AACACTTATGAGACTGTTTG+AGG + chr7_2:70156133-70156152 Msa1072900:intron 35.0%
ACACTTATGAGACTGTTTGA+GGG + chr7_2:70156134-70156153 Msa1072900:intron 35.0%
TATTATATCTAGGCCCTGTT+AGG - chr7_2:70156348-70156367 None:intergenic 35.0%
!! ATTGTTGGTTCAGATATGCT+AGG + chr7_2:70156395-70156414 Msa1072900:intron 35.0%
TACAAAAAGGACTCATCATC+GGG - chr7_2:70156564-70156583 None:intergenic 35.0%
GTACAAAAAGGACTCATCAT+CGG - chr7_2:70156565-70156584 None:intergenic 35.0%
CACCCAATCAAAAAAGGGTT+TGG + chr7_2:70153482-70153501 Msa1072900:five_prime_UTR 40.0%
GAGGGAAAGGAATAATAAGG+AGG - chr7_2:70153569-70153588 None:intergenic 40.0%
TTCCTTTCCCTCATTCTTAG+AGG + chr7_2:70153577-70153596 Msa1072900:five_prime_UTR 40.0%
TCCTTTCCCTCATTCTTAGA+GGG + chr7_2:70153578-70153597 Msa1072900:five_prime_UTR 40.0%
! TTCCTTCCCTCTAAGAATGA+GGG - chr7_2:70153587-70153606 None:intergenic 40.0%
! TTTCCTTCCCTCTAAGAATG+AGG - chr7_2:70153588-70153607 None:intergenic 40.0%
AAGAACCATGGATTCATCGT+TGG + chr7_2:70153695-70153714 Msa1072900:exon 40.0%
AGAAACCAACGATGAATCCA+TGG - chr7_2:70153703-70153722 None:intergenic 40.0%
! TCTAACAACGATGTTGCTTC+TGG + chr7_2:70153720-70153739 Msa1072900:CDS 40.0%
! CTAACAACGATGTTGCTTCT+GGG + chr7_2:70153721-70153740 Msa1072900:CDS 40.0%
!! TGTTGCTTCTGGGTTTGTTA+AGG + chr7_2:70153731-70153750 Msa1072900:CDS 40.0%
!! TGGGTTTGTTAAGGAGTCAA+TGG + chr7_2:70153740-70153759 Msa1072900:CDS 40.0%
!!! GTCAATGGTTGACCCTTTTT+TGG + chr7_2:70153755-70153774 Msa1072900:CDS 40.0%
GAAGAGCCTCAACCAAAAAA+GGG - chr7_2:70153770-70153789 None:intergenic 40.0%
TGAAGAGCCTCAACCAAAAA+AGG - chr7_2:70153771-70153790 None:intergenic 40.0%
GAAACTAACTGGTTAGACGA+TGG - chr7_2:70153803-70153822 None:intergenic 40.0%
!! GTTGGGATTGTTTGTTTCTG+TGG + chr7_2:70154086-70154105 Msa1072900:intron 40.0%
TGAAGCTAGGTGTTAATTGG+GGG + chr7_2:70154121-70154140 Msa1072900:intron 40.0%
CTTCAAACAAACTTAGGGCT+AGG - chr7_2:70154196-70154215 None:intergenic 40.0%
!! GGATTAGCTCGTAATGATGA+AGG + chr7_2:70154293-70154312 Msa1072900:intron 40.0%
TTGTTGCCGAATAGCTATAG+TGG + chr7_2:70154359-70154378 Msa1072900:intron 40.0%
CTTGAACAAATCGCCATTGT+TGG + chr7_2:70154384-70154403 Msa1072900:intron 40.0%
TTTAAGCCATGAAAAGCAGG+GGG - chr7_2:70154577-70154596 None:intergenic 40.0%
AGACTTAAGCTACTGTCTGA+TGG + chr7_2:70154659-70154678 Msa1072900:intron 40.0%
GACTTAAGCTACTGTCTGAT+GGG + chr7_2:70154660-70154679 Msa1072900:intron 40.0%
CAAAAATGGACACTTGACAC+TGG - chr7_2:70154735-70154754 None:intergenic 40.0%
AGCAACTCAATCACAATCTC+AGG - chr7_2:70154854-70154873 None:intergenic 40.0%
TCAACTCATCAACTACTCCA+GGG - chr7_2:70154909-70154928 None:intergenic 40.0%
ATCAACTCATCAACTACTCC+AGG - chr7_2:70154910-70154929 None:intergenic 40.0%
CCAAAATACAGCCAGAAAAG+GGG - chr7_2:70155070-70155089 None:intergenic 40.0%
!! TGTATCTTTAGTTCTGCGGA+TGG + chr7_2:70155164-70155183 Msa1072900:intron 40.0%
ATTTCAGATAAGCGAACCAC+GGG - chr7_2:70155381-70155400 None:intergenic 40.0%
TCATTGTCCAACTGTTTAGC+AGG - chr7_2:70155405-70155424 None:intergenic 40.0%
!!! CAGAGGGTTTCCTTTTTTTG+AGG - chr7_2:70155499-70155518 None:intergenic 40.0%
! GCAAGAGCACGTATCTTTAA+TGG + chr7_2:70155555-70155574 Msa1072900:intron 40.0%
! TTCAGTTGATACCTCATCCA+TGG + chr7_2:70155593-70155612 Msa1072900:intron 40.0%
TGAAACTAGCAAAATCCCCA+TGG + chr7_2:70155659-70155678 Msa1072900:CDS 40.0%
ATCTTTCTGAATCAGCCATG+GGG - chr7_2:70155677-70155696 None:intergenic 40.0%
GAGTTGCCATTATCAGAGAT+AGG + chr7_2:70155727-70155746 Msa1072900:CDS 40.0%
CCATAGCTACGATCATAATC+TGG - chr7_2:70155771-70155790 None:intergenic 40.0%
CCAGATTATGATCGTAGCTA+TGG + chr7_2:70155768-70155787 Msa1072900:CDS 40.0%
!! TGACATGTCTTTTGTTTCGC+TGG + chr7_2:70155957-70155976 Msa1072900:intron 40.0%
TGTTTCGCTGGCATGTTAAA+TGG + chr7_2:70155969-70155988 Msa1072900:intron 40.0%
TGGCATGTTAAATGGAACTC+TGG + chr7_2:70155977-70155996 Msa1072900:intron 40.0%
TAAACTATCCTGAGAGCTGA+TGG - chr7_2:70156211-70156230 None:intergenic 40.0%
!! TTGGCAAATTAAAAGGCACC+AGG - chr7_2:70156444-70156463 None:intergenic 40.0%
! GCAAATGAAGGTTGAGCTTT+TGG - chr7_2:70156463-70156482 None:intergenic 40.0%
GTTTCATACGGAGCAAATGA+AGG - chr7_2:70156475-70156494 None:intergenic 40.0%
ACAAAAAGGACTCATCATCG+GGG - chr7_2:70156563-70156582 None:intergenic 40.0%
TTCAATCCTGGGGTACAAAA+AGG - chr7_2:70156577-70156596 None:intergenic 40.0%
! TGCGGTGACCCTTTTTACAT+TGG + chr7_2:70153438-70153457 Msa1072900:five_prime_UTR 45.0%
! TCCCTCTAAGAATGAGGGAA+AGG - chr7_2:70153582-70153601 None:intergenic 45.0%
TTCCCTCATTCTTAGAGGGA+AGG + chr7_2:70153582-70153601 Msa1072900:five_prime_UTR 45.0%
!!! GGTTGACCCTTTTTTGGTTG+AGG + chr7_2:70153761-70153780 Msa1072900:CDS 45.0%
AGTGGTCAAATAGCGGCTAT+AGG + chr7_2:70154429-70154448 Msa1072900:intron 45.0%
GCTATAGCACTCTAGCATAG+TGG + chr7_2:70154455-70154474 Msa1072900:intron 45.0%
TTTACATAAGACCGTGGAGC+TGG + chr7_2:70154804-70154823 Msa1072900:intron 45.0%
CAACTCATCAACTACTCCAG+GGG - chr7_2:70154908-70154927 None:intergenic 45.0%
!!! CCCCTTTTCTGGCTGTATTT+TGG + chr7_2:70155067-70155086 Msa1072900:intron 45.0%
CCAGTCGGAGATAAGAAGAA+GGG - chr7_2:70155251-70155270 None:intergenic 45.0%
! CATCGTGTTGCTCAACACTA+TGG + chr7_2:70155276-70155295 Msa1072900:CDS 45.0%
TCTCTTCCACACTTCTCAGA+GGG - chr7_2:70155515-70155534 None:intergenic 45.0%
! AGAGGAAGGAGGAGTATGAT+CGG + chr7_2:70155532-70155551 Msa1072900:CDS 45.0%
!! TCTCTGATAATGGCAACTCG+AGG - chr7_2:70155726-70155745 None:intergenic 45.0%
GCTTATTTCCATCAGCTCTC+AGG + chr7_2:70156200-70156219 Msa1072900:intron 45.0%
CAGGGCCTAGATATAATAGC+TGG + chr7_2:70156350-70156369 Msa1072900:intron 45.0%
GCTCAAGCTTCACTTGGATA+TGG + chr7_2:70156526-70156545 Msa1072900:CDS 45.0%
! ATGAGTCCTTTTTGTACCCC+AGG + chr7_2:70156568-70156587 Msa1072900:CDS 45.0%
TTGTACCCCAGGATTGAATC+CGG + chr7_2:70156579-70156598 Msa1072900:CDS 45.0%
TTGTAGGACTTGGCCATTGT+AGG - chr7_2:70156624-70156643 None:intergenic 45.0%
TAACTGGTTAGACGATGGCG+AGG - chr7_2:70153798-70153817 None:intergenic 50.0%
AAGCTACTGTCTGATGGGAC+TGG + chr7_2:70154665-70154684 Msa1072900:intron 50.0%
TCGTACAATTGCCAGCTCCA+CGG - chr7_2:70154818-70154837 None:intergenic 50.0%
TCAGACTAGTAGCCATTCCG+TGG + chr7_2:70154968-70154987 Msa1072900:intron 50.0%
AATCCAACTGCCATCCTCCA+CGG - chr7_2:70154988-70155007 None:intergenic 50.0%
CCCTTCTTCTTATCTCCGAC+TGG + chr7_2:70155248-70155267 Msa1072900:CDS 50.0%
GCCAGTCGGAGATAAGAAGA+AGG - chr7_2:70155252-70155271 None:intergenic 50.0%
ACCTGAAAGCAAGTATCCCG+TGG + chr7_2:70155362-70155381 Msa1072900:CDS 50.0%
ACCACGGGATACTTGCTTTC+AGG - chr7_2:70155366-70155385 None:intergenic 50.0%
! AGGAAACCCTCTGAGAAGTG+TGG + chr7_2:70155506-70155525 Msa1072900:CDS 50.0%
CTCTCTTCCACACTTCTCAG+AGG - chr7_2:70155516-70155535 None:intergenic 50.0%
! CTCTGAGAAGTGTGGAAGAG+AGG + chr7_2:70155514-70155533 Msa1072900:CDS 50.0%
! GAGAAGTGTGGAAGAGAGGA+AGG + chr7_2:70155518-70155537 Msa1072900:CDS 50.0%
AAGTGTGGAAGAGAGGAAGG+AGG + chr7_2:70155521-70155540 Msa1072900:CDS 50.0%
! GAGGAAGGAGGAGTATGATC+GGG + chr7_2:70155533-70155552 Msa1072900:CDS 50.0%
ATCTGTTGGGACCATGGATG+AGG - chr7_2:70155607-70155626 None:intergenic 50.0%
TCATCCATGGTCCCAACAGA+TGG + chr7_2:70155606-70155625 Msa1072900:CDS 50.0%
CATCCATGGTCCCAACAGAT+GGG + chr7_2:70155607-70155626 Msa1072900:CDS 50.0%
ATCAGCCTCTGCTGTTAACC+TGG + chr7_2:70156423-70156442 Msa1072900:CDS 50.0%
CCAAGTGAAGCTTGAGCTTG+TGG - chr7_2:70156523-70156542 None:intergenic 50.0%
CCACAAGCTCAAGCTTCACT+TGG + chr7_2:70156520-70156539 Msa1072900:CDS 50.0%
AGATGCCGGATTCAATCCTG+GGG - chr7_2:70156587-70156606 None:intergenic 50.0%
CAGATGCCGGATTCAATCCT+GGG - chr7_2:70156588-70156607 None:intergenic 50.0%
CAGGATTGAATCCGGCATCT+GGG + chr7_2:70156587-70156606 Msa1072900:CDS 50.0%
AGGATTGAATCCGGCATCTG+GGG + chr7_2:70156588-70156607 Msa1072900:CDS 50.0%
GGGATGGTGCTTACCTACAA+TGG + chr7_2:70156608-70156627 Msa1072900:CDS 50.0%
CCATGAAAAGCAGGGGGAAG+GGG - chr7_2:70154571-70154590 None:intergenic 55.0%
GCCATGAAAAGCAGGGGGAA+GGG - chr7_2:70154572-70154591 None:intergenic 55.0%
AGCCATGAAAAGCAGGGGGA+AGG - chr7_2:70154573-70154592 None:intergenic 55.0%
!! GTCTGATGGGACTGGTTGTG+AGG + chr7_2:70154673-70154692 Msa1072900:intron 55.0%
GACTAGTAGCCATTCCGTGG+AGG + chr7_2:70154971-70154990 Msa1072900:intron 55.0%
AGTAGCCATTCCGTGGAGGA+TGG + chr7_2:70154975-70154994 Msa1072900:intron 55.0%
AACTGCCATCCTCCACGGAA+TGG - chr7_2:70154983-70155002 None:intergenic 55.0%
ATTCCGTGGAGGATGGCAGT+TGG + chr7_2:70154982-70155001 Msa1072900:intron 55.0%
CAACACGATGTGCAGCCAGT+CGG - chr7_2:70155266-70155285 None:intergenic 55.0%
CTTCCCATCTGTTGGGACCA+TGG - chr7_2:70155613-70155632 None:intergenic 55.0%
AGGCACCAGGTTAACAGCAG+AGG - chr7_2:70156431-70156450 None:intergenic 55.0%
CTCATCATCGGGGTTGAAGG+CGG - chr7_2:70156553-70156572 None:intergenic 55.0%
GGACTCATCATCGGGGTTGA+AGG - chr7_2:70156556-70156575 None:intergenic 55.0%
CCAGATGCCGGATTCAATCC+TGG - chr7_2:70156589-70156608 None:intergenic 55.0%
CCAGGATTGAATCCGGCATC+TGG + chr7_2:70156586-70156605 Msa1072900:CDS 55.0%
TTGAATCCGGCATCTGGGGA+TGG + chr7_2:70156592-70156611 Msa1072900:CDS 55.0%
TAAGCACCATCCCCAGATGC+CGG - chr7_2:70156601-70156620 None:intergenic 55.0%
GCAGGGGGAAGGGGAAAGTA+GGG - chr7_2:70154562-70154581 None:intergenic 60.0%
AGCAGGGGGAAGGGGAAAGT+AGG - chr7_2:70154563-70154582 None:intergenic 60.0%
!! CCCCTTCCCCCTGCTTTTCA+TGG + chr7_2:70154568-70154587 Msa1072900:intron 60.0%
GGGGGAAGGGGAAAGTAGGG+AGG - chr7_2:70154559-70154578 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 70153432 70156645 70153432 ID=Msa1072900;Name=Msa1072900
chr7_2 mRNA 70153432 70156645 70153432 ID=Msa1072900-mRNA-1;Parent=Msa1072900;Name=Msa1072900-mRNA-1;_AED=0.15;_eAED=0.15;_QI=270|0.25|0.2|1|0.25|0.2|5|0|306
chr7_2 exon 70153432 70153813 70153432 ID=Msa1072900-mRNA-1:exon:15700;Parent=Msa1072900-mRNA-1
chr7_2 exon 70155175 70155350 70155175 ID=Msa1072900-mRNA-1:exon:15701;Parent=Msa1072900-mRNA-1
chr7_2 exon 70155360 70155564 70155360 ID=Msa1072900-mRNA-1:exon:15702;Parent=Msa1072900-mRNA-1
chr7_2 exon 70155598 70155793 70155598 ID=Msa1072900-mRNA-1:exon:15703;Parent=Msa1072900-mRNA-1
chr7_2 exon 70156417 70156645 70156417 ID=Msa1072900-mRNA-1:exon:15704;Parent=Msa1072900-mRNA-1
chr7_2 five_prime_UTR 70153432 70153701 70153432 ID=Msa1072900-mRNA-1:five_prime_utr;Parent=Msa1072900-mRNA-1
chr7_2 CDS 70153702 70153813 70153702 ID=Msa1072900-mRNA-1:cds;Parent=Msa1072900-mRNA-1
chr7_2 CDS 70155175 70155350 70155175 ID=Msa1072900-mRNA-1:cds;Parent=Msa1072900-mRNA-1
chr7_2 CDS 70155360 70155564 70155360 ID=Msa1072900-mRNA-1:cds;Parent=Msa1072900-mRNA-1
chr7_2 CDS 70155598 70155793 70155598 ID=Msa1072900-mRNA-1:cds;Parent=Msa1072900-mRNA-1
chr7_2 CDS 70156417 70156645 70156417 ID=Msa1072900-mRNA-1:cds;Parent=Msa1072900-mRNA-1
Gene Sequence

>Msa1072900

ATGGATTCATCGTTGGTTTCTAACAACGATGTTGCTTCTGGGTTTGTTAAGGAGTCAATGGTTGACCCTTTTTTGGTTGAGGCTCTTCAGAATCCTCGCCATCGTCTAACCATTCTGCGGATGGAGCTAGATATCCAGAAATTTATGAACAATGCTGATCAGCAGCATTTTGAGTTTCAACATTTCCCTTCTTCTTATCTCCGACTGGCTGCACATCGTGTTGCTCAACACTATGGTATGCAAACAATGGTTCAAGATATTGGCTTAGATGGACAGAGTAAAATTCTGTTACCTGAAAGCAAGTATCCCGTGGTTCGCTTATCTGAAATACCTGCTAAACAGTTGGACAATGAGAAATCCGAGCTGAAAAAAATTGTCATACAATCTAGGCCTCATAAAACTAGTTTGAATGGAGCCAATGATTCCTCAAAAAAAGGAAACCCTCTGAGAAGTGTGGAAGAGAGGAAGGAGGAGTATGATCGGGCAAGAGCACTTGATACCTCATCCATGGTCCCAACAGATGGGAAGAATTCTTTTATGAGCAAGGATGAGAGTGAAACTAGCAAAATCCCCATGGCTGATTCAGAAAGATTTTTTGGTGTCAGGGATAATAGTTATCCTCGAGTTGCCATTATCAGAGATAGGGAAAAGGATCGAAGTGATCCAGATTATGATCGTAGCTATGGAAGGAGTTTATCAGCCTCTGCTGTTAACCTGGTGCCTTTTAATTTGCCAAAAGCTCAACCTTCATTTGCTCCGTATGAAACTACTTTTAATCAGTTGGGTCAGATGCCACAAGCTCAAGCTTCACTTGGATATGGACCGCCTTCAACCCCGATGATGAGTCCTTTTTGTACCCCAGGATTGAATCCGGCATCTGGGGATGGTGCTTACCTACAATGGCCAAGTCCTACAATG

Protein sequence

>Msa1072900

MDSSLVSNNDVASGFVKESMVDPFLVEALQNPRHRLTILRMELDIQKFMNNADQQHFEFQHFPSSYLRLAAHRVAQHYGMQTMVQDIGLDGQSKILLPESKYPVVRLSEIPAKQLDNEKSELKKIVIQSRPHKTSLNGANDSSKKGNPLRSVEERKEEYDRARALDTSSMVPTDGKNSFMSKDESETSKIPMADSERFFGVRDNSYPRVAIIRDREKDRSDPDYDRSYGRSLSASAVNLVPFNLPKAQPSFAPYETTFNQLGQMPQAQASLGYGPPSTPMMSPFCTPGLNPASGDGAYLQWPSPTM