AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1073330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1073330 MtrunA17_Chr7g0256371 96.120 567 20 1 1 567 60 624 0.0 1109
Msa1073330 MtrunA17_Chr7g0256391 89.065 567 62 0 1 567 51 617 0.0 1036
Msa1073330 MtrunA17_Chr7g0256411 88.693 566 62 2 2 567 83 646 0.0 1019
Msa1073330 MtrunA17_Chr4g0026761 80.961 562 107 0 1 562 51 612 0.0 939
Msa1073330 MtrunA17_Chr8g0337081 66.607 563 187 1 1 562 54 616 0.0 765
Msa1073330 MtrunA17_Chr8g0337101 61.812 563 213 2 1 561 90 652 0.0 733
Msa1073330 MtrunA17_Chr4g0026811 83.452 423 70 0 1 423 37 459 0.0 715
Msa1073330 MtrunA17_Chr4g0073231 32.867 572 373 4 3 563 55 626 2.18e-109 340
Msa1073330 MtrunA17_Chr2g0305431 35.146 239 148 1 3 234 54 292 4.19e-51 177
Msa1073330 MtrunA17_Chr4g0026821 72.222 90 25 0 422 511 4 93 3.12e-41 144
Msa1073330 MtrunA17_Chr2g0305451 31.651 218 141 3 354 563 2 219 6.40e-28 111
Msa1073330 MtrunA17_Chr4g0026831 84.091 44 7 0 519 562 1 44 9.71e-20 82.8
Msa1073330 MtrunA17_Chr2g0305441 28.571 119 85 0 239 357 43 161 5.97e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1073330 AT1G02205.4 58.554 567 229 2 1 561 55 621 0.0 682
Msa1073330 AT1G02205.2 58.554 567 229 2 1 561 54 620 0.0 681
Msa1073330 AT1G02205.3 58.217 572 228 2 1 561 54 625 0.0 678
Msa1073330 AT1G02190.1 58.494 571 225 6 1 561 54 622 0.0 660
Msa1073330 AT1G02190.2 58.144 571 223 7 1 561 54 618 0.0 652
Msa1073330 AT2G37700.3 56.661 563 239 3 4 561 53 615 0.0 643
Msa1073330 AT2G37700.1 56.306 563 232 4 4 561 53 606 0.0 634
Msa1073330 AT2G37700.4 52.575 563 225 4 4 561 53 578 0.0 577
Msa1073330 AT1G02205.1 54.566 449 198 2 119 561 8 456 6.80e-179 513
Msa1073330 AT2G37700.2 57.619 420 177 1 4 422 53 472 9.18e-170 491
Msa1073330 AT1G02205.5 52.406 374 172 2 194 561 8 381 1.85e-142 417
Msa1073330 AT5G57800.1 34.079 581 366 8 3 567 53 632 9.78e-105 328

Find 143 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTATTTATGACTACATTTA+TGG 0.042810 7_2:+70782374 Msa1073330:CDS
TGGAAGCCATATTATGAATT+TGG 0.112185 7_2:-70780050 None:intergenic
GCCTAAACGCATTTGATAAA+TGG 0.206081 7_2:-70782498 None:intergenic
TTCATCCCAAATTCATAATA+TGG 0.212635 7_2:+70780044 Msa1073330:five_prime_UTR
CATTGATTTCATGAACAATA+TGG 0.227693 7_2:+70781742 Msa1073330:CDS
TGCTTAGCACCGAGAAAGTA+TGG 0.268407 7_2:+70785521 Msa1073330:CDS
AAGTAAGAGAGGAGTTTCTT+AGG 0.281109 7_2:-70781788 None:intergenic
CATGCACTCATTACTCTTCT+TGG 0.283707 7_2:-70785436 None:intergenic
CTTGATTGAAGAAACAATTA+TGG 0.293400 7_2:+70782931 Msa1073330:CDS
GTAGTAATTTCAACACATTT+TGG 0.294781 7_2:-70785731 None:intergenic
TTTGGAGGGAAATGAGAAAA+TGG 0.296760 7_2:-70785219 None:intergenic
CACTCCATCACACCAAATTC+AGG 0.298150 7_2:+70782330 Msa1073330:CDS
TAGAGGAAGTATATCGATAA+TGG 0.303413 7_2:-70785619 None:intergenic
CCAACCCTCAAACATCTAAA+TGG 0.304289 7_2:+70782537 Msa1073330:CDS
GAATGCTACACAACCAGATT+TGG 0.313054 7_2:+70780477 Msa1073330:CDS
CCATAAATGTAGTCATAAAT+AGG 0.314825 7_2:-70782374 None:intergenic
TCTTCTGTGGCTGCACTATA+TGG 0.315140 7_2:+70781707 Msa1073330:CDS
ATGAACATTCCATCCTTCTA+AGG 0.317589 7_2:-70785482 None:intergenic
GGAAGCCATATTATGAATTT+GGG 0.323479 7_2:-70780049 None:intergenic
GATGAAAATAATGTAGTATA+TGG 0.326327 7_2:-70780027 None:intergenic
TGAGTAGTTAGCCCTGAATT+TGG 0.328701 7_2:-70782342 None:intergenic
AGCACTTGATTTGTCTCTTT+AGG 0.336516 7_2:-70783936 None:intergenic
AGCTTATGACTTGGATTTGT+GGG 0.338978 7_2:+70782597 Msa1073330:CDS
TCTTTGATGTGACTTGGTTA+TGG 0.351802 7_2:+70780341 Msa1073330:five_prime_UTR
GGAGCAAAGGTGATAAGTTT+AGG 0.355246 7_2:+70782968 Msa1073330:CDS
TATCGACTTGTTCGAATTCA+AGG 0.358353 7_2:-70780556 None:intergenic
ACTTGCTTCCCATACTTTCT+CGG 0.360626 7_2:-70785530 None:intergenic
AGCATTCTGATCAACATAAA+AGG 0.365500 7_2:-70780461 None:intergenic
GCAGGTGGCTGTATTATATA+AGG 0.367330 7_2:+70784818 Msa1073330:intron
TTTGTGAGAATATTCTTTAG+AGG 0.382170 7_2:-70785571 None:intergenic
GGAATAATTCATGCCTTAGA+AGG 0.384364 7_2:+70785469 Msa1073330:CDS
ATTATGGAGGCTGAGTTAAA+TGG 0.386727 7_2:+70782947 Msa1073330:CDS
TCTTCGAGGCAAGTTCAATA+AGG 0.388690 7_2:+70783959 Msa1073330:CDS
TCCATTTATCAAATGCGTTT+AGG 0.391416 7_2:+70782497 Msa1073330:CDS
TATGACAAATGCTCCGCAAA+TGG 0.395402 7_2:-70781635 None:intergenic
GAAACCTCTGGGGAGCTTCA+AGG 0.397370 7_2:+70780101 Msa1073330:five_prime_UTR
GTCTGTAAGGATGCCTGGTT+TGG 0.397427 7_2:-70780070 None:intergenic
CTCTTTCATATGGGGTGAAA+GGG 0.398310 7_2:+70780415 Msa1073330:five_prime_UTR
TGAGAATATTCTTTAGAGGT+TGG 0.401910 7_2:-70785567 None:intergenic
TGGGAAGCAAGTATTCTTCA+TGG 0.404509 7_2:+70785541 Msa1073330:CDS
TGTTTGAGGGTTGGAAGCTA+AGG 0.406043 7_2:-70782528 None:intergenic
GCATCCTTACAGACTGGCCT+TGG 0.407256 7_2:+70780079 Msa1073330:five_prime_UTR
ATTGATTTCATGAACAATAT+GGG 0.407915 7_2:+70781743 Msa1073330:CDS
ACCACATCTGGTGACTCCTT+TGG 0.410013 7_2:-70782446 None:intergenic
GGAACTCTTTATATAGTGCT+TGG 0.410899 7_2:-70780006 None:intergenic
ATAGCATATACTCTTTCATA+TGG 0.411100 7_2:+70780405 Msa1073330:five_prime_UTR
AAAAGCAAGATTGTTGATAA+AGG 0.411329 7_2:+70780533 Msa1073330:CDS
TTGTAGCTTAAGATCATTGA+AGG 0.414295 7_2:-70782645 None:intergenic
TGTGAATTCATGAATGTAGT+AGG 0.418846 7_2:-70785291 None:intergenic
GTATGAGAGATACTTCAAAA+TGG 0.422668 7_2:-70781813 None:intergenic
GTGAAATAGAAATCCAAATC+TGG 0.423701 7_2:-70780490 None:intergenic
AAAGAGTTCATACAAGTGAT+AGG 0.424171 7_2:-70780923 None:intergenic
ATGAGTGCATGGCGTATTGC+TGG 0.430094 7_2:+70785448 Msa1073330:CDS
AAGTTTAGGACTTCTAAATC+AGG 0.430707 7_2:+70782982 Msa1073330:CDS
TTGAAGATAAAAGTTGTAGA+TGG 0.435173 7_2:+70783876 Msa1073330:CDS
TCACGTTACCAAACTGCTAA+AGG 0.436168 7_2:+70780509 Msa1073330:CDS
AATTAACCAAGTGTGACAAA+TGG 0.438907 7_2:+70785592 Msa1073330:exon
ACTGCACTAGTATATTATAT+AGG 0.441560 7_2:+70780719 Msa1073330:CDS
ATGATCTTAAGCTACAAAGT+TGG 0.442074 7_2:+70782651 Msa1073330:CDS
AGAGGAAGTATATCGATAAT+GGG 0.448082 7_2:-70785618 None:intergenic
GATACCATTTAGATGTTTGA+GGG 0.449852 7_2:-70782541 None:intergenic
GATAACGAGAGTATAAATAA+TGG 0.451529 7_2:-70780868 None:intergenic
TAGCATATACTCTTTCATAT+GGG 0.452930 7_2:+70780406 Msa1073330:five_prime_UTR
CATAATATGGCTTCCAAACC+AGG 0.454942 7_2:+70780057 Msa1073330:five_prime_UTR
TATGAGAGATACTTCAAAAT+GGG 0.456294 7_2:-70781812 None:intergenic
TATGGTTAGTTGGAGATGAA+TGG 0.456856 7_2:+70785151 Msa1073330:CDS
AGCTTAGAGAACATTGTAAA+GGG 0.462318 7_2:-70782578 None:intergenic
GGAAATATAGCTTGGTACAC+TGG 0.463338 7_2:-70780440 None:intergenic
CCAACCTTTGGAGTATTGAT+TGG 0.465706 7_2:-70784900 None:intergenic
AGGATACATGATATTTCCTA+TGG 0.467393 7_2:+70780739 Msa1073330:CDS
GTTTCCAAGGCCAGTCTGTA+AGG 0.467818 7_2:-70780083 None:intergenic
AAGCTTATGACTTGGATTTG+TGG 0.468355 7_2:+70782596 Msa1073330:CDS
GTAGTAGGAGTAATCATTGC+TGG 0.470094 7_2:-70785276 None:intergenic
GGTGTTGCTTTCTAAAACAA+AGG 0.470122 7_2:-70782624 None:intergenic
TCTTTGTCTTTGATGTGACT+TGG 0.472617 7_2:+70780335 Msa1073330:five_prime_UTR
GGCCAGTCTGTAAGGATGCC+TGG 0.476832 7_2:-70780075 None:intergenic
ATTAACCAAGTGTGACAAAT+GGG 0.477221 7_2:+70785593 Msa1073330:exon
TGTGTTAAATGCACCACATC+TGG 0.479074 7_2:-70782458 None:intergenic
ATCTAAAAGATATGGTTAGT+TGG 0.480880 7_2:+70785141 Msa1073330:intron
AGATACCATTTAGATGTTTG+AGG 0.483611 7_2:-70782542 None:intergenic
AGACTGGCCTTGGAAACCTC+TGG 0.487844 7_2:+70780089 Msa1073330:five_prime_UTR
GACTGGCCTTGGAAACCTCT+GGG 0.488240 7_2:+70780090 Msa1073330:five_prime_UTR
ACTCTTTCATATGGGGTGAA+AGG 0.491070 7_2:+70780414 Msa1073330:five_prime_UTR
CCATTTAGATGTTTGAGGGT+TGG 0.492002 7_2:-70782537 None:intergenic
ATGGGATGAATATGAGCAAA+TGG 0.495092 7_2:+70785170 Msa1073330:CDS
GGGAACCCATTTGTCACACT+TGG 0.495754 7_2:-70785598 None:intergenic
AAGCTTAGAGAACATTGTAA+AGG 0.498475 7_2:-70782579 None:intergenic
ATGGTTAGTTGGAGATGAAT+GGG 0.501106 7_2:+70785152 Msa1073330:CDS
CTATGGCTTCTAATTTACCA+TGG 0.513639 7_2:+70780756 Msa1073330:CDS
ATAAACAATGTTGTTAACAT+TGG 0.513902 7_2:-70781677 None:intergenic
ATGACAAATGCTCCGCAAAT+GGG 0.515132 7_2:-70781634 None:intergenic
GGTATGAACAATGATCCTTT+CGG 0.516935 7_2:-70785198 None:intergenic
ACAAATCAAGTGCTTCTTCG+AGG 0.524077 7_2:+70783945 Msa1073330:CDS
GAAATTGAAACATGGATACA+TGG 0.528938 7_2:-70785709 None:intergenic
GCTTATAGATCTTAGACAAA+GGG 0.537060 7_2:+70784845 Msa1073330:CDS
AGCTTATAGATCTTAGACAA+AGG 0.539004 7_2:+70784844 Msa1073330:CDS
TGTTCTCTAAGCTTATGACT+TGG 0.540236 7_2:+70782588 Msa1073330:CDS
ACTGTGAACATTATATTCAA+AGG 0.541828 7_2:+70783844 Msa1073330:CDS
TAATCATTGCTGGTGTATAG+TGG 0.543081 7_2:-70785266 None:intergenic
AGCTGTGACACACCCATTTG+CGG 0.546338 7_2:+70781622 Msa1073330:intron
AAGTCGATAGAGAAACCAAT+TGG 0.548372 7_2:+70780570 Msa1073330:CDS
TAGCCCTGAATTTGGTGTGA+TGG 0.550314 7_2:-70782334 None:intergenic
ACTCCATCACACCAAATTCA+GGG 0.553923 7_2:+70782331 Msa1073330:CDS
CATCATGTCGAAAGAAAGCT+TGG 0.558066 7_2:+70784869 Msa1073330:CDS
TAATTCATGCCTTAGAAGGA+TGG 0.560259 7_2:+70785473 Msa1073330:CDS
ACATAAAAGGAAATATAGCT+TGG 0.563782 7_2:-70780448 None:intergenic
CTCCTTTGGTCTAATCAATG+AGG 0.565009 7_2:-70782432 None:intergenic
CTTACAGCAATATTGCATGC+TGG 0.570938 7_2:+70780800 Msa1073330:CDS
GCTCAGTGACAATTGAAGAA+TGG 0.571470 7_2:-70780901 None:intergenic
GGCTGAGTTAAATGGAGCAA+AGG 0.578535 7_2:+70782955 Msa1073330:CDS
TTCACCAATCAATACTCCAA+AGG 0.582765 7_2:+70784896 Msa1073330:CDS
TCTGCATAAAGCATTAGCAA+TGG 0.584639 7_2:-70783991 None:intergenic
CATGAATTCACACTCTTGTG+AGG 0.587054 7_2:+70785302 Msa1073330:CDS
GTTTGTTATGCATTAATACA+CGG 0.587856 7_2:+70785652 Msa1073330:three_prime_UTR
AAGCTCCCCAGAGGTTTCCA+AGG 0.587944 7_2:-70780096 None:intergenic
AACAAACTTTGTCAAAGTAG+AGG 0.588982 7_2:-70785636 None:intergenic
ACCAAAGGAGTCACCAGATG+TGG 0.589164 7_2:+70782445 Msa1073330:CDS
GGCTTCATATGTAGCATCTG+TGG 0.589327 7_2:-70782411 None:intergenic
AGCCTCATTGATTAGACCAA+AGG 0.589348 7_2:+70782430 Msa1073330:CDS
GCTTAGCACCGAGAAAGTAT+GGG 0.590984 7_2:+70785522 Msa1073330:CDS
CAAGAAGAGTAATGAGTGCA+TGG 0.592300 7_2:+70785437 Msa1073330:CDS
AACCAGGCATCCTTACAGAC+TGG 0.594883 7_2:+70780073 Msa1073330:five_prime_UTR
TTACCATGGTGGAGAACAGA+TGG 0.597460 7_2:+70780770 Msa1073330:CDS
CATGGTAAATTAGAAGCCAT+AGG 0.599980 7_2:-70780755 None:intergenic
ATATGCTATGAGCAATCCAC+GGG 0.601636 7_2:-70780391 None:intergenic
AGCATATACTCTTTCATATG+GGG 0.606631 7_2:+70780407 Msa1073330:five_prime_UTR
GGATGGAATGTTCATGAATG+TGG 0.610974 7_2:+70785490 Msa1073330:CDS
AGTTCGTGATTCTAAGCCCG+TGG 0.612195 7_2:+70780375 Msa1073330:five_prime_UTR
TTTAGGAATGTTGTTCAACA+CGG 0.612745 7_2:-70783919 None:intergenic
AATGGTATCTACATTTAATG+TGG 0.614475 7_2:+70782555 Msa1073330:CDS
TCAAAATGGGAAAGTAAGAG+AGG 0.615999 7_2:-70781799 None:intergenic
TCAACACGGTTGCAGCAGCT+AGG 0.626529 7_2:-70783905 None:intergenic
GATTGAAGAAACAATTATGG+AGG 0.627286 7_2:+70782934 Msa1073330:CDS
TGGCTTCTAATTTACCATGG+TGG 0.628032 7_2:+70780759 Msa1073330:CDS
TATATGCTATGAGCAATCCA+CGG 0.638673 7_2:-70780392 None:intergenic
AATATTGCATGCTGGACCAG+TGG 0.640771 7_2:+70780808 Msa1073330:CDS
GAGCAAATGGAAGCACCGAA+AGG 0.641337 7_2:+70785183 Msa1073330:CDS
TCATTGCTGGTGTATAGTGG+TGG 0.652055 7_2:-70785263 None:intergenic
TATACCAAGATTTAAAACAC+AGG 0.658845 7_2:+70782676 Msa1073330:CDS
ACACCATCTGTTCTCCACCA+TGG 0.679185 7_2:-70780773 None:intergenic
ACTGGCCTTGGAAACCTCTG+GGG 0.699980 7_2:+70780091 Msa1073330:five_prime_UTR
AGAACCTTGAAGCTCCCCAG+AGG 0.725693 7_2:-70780105 None:intergenic
ATGGTGGAGAACAGATGGTG+TGG 0.733193 7_2:+70780775 Msa1073330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAAATATTCTTTTTTAC+AGG - chr7_2:70781950-70781969 None:intergenic 10.0%
!!! AAATGTTATGAAATTTTATA+GGG + chr7_2:70782150-70782169 Msa1073330:intron 10.0%
!! TATTTACTAAATTAATAGAA+GGG - chr7_2:70783021-70783040 None:intergenic 10.0%
!! ATATTTACTAAATTAATAGA+AGG - chr7_2:70783022-70783041 None:intergenic 10.0%
!!! TTTTTCTATTGTTTTTTTAA+AGG + chr7_2:70783106-70783125 Msa1073330:intron 10.0%
!!! TTTTCTATTGTTTTTTTAAA+GGG + chr7_2:70783107-70783126 Msa1073330:intron 10.0%
!!! AACTTTTATATATATCTTTA+TGG + chr7_2:70783752-70783771 Msa1073330:intron 10.0%
!! ATATAAAATGAAATATATAG+TGG - chr7_2:70784134-70784153 None:intergenic 10.0%
!! AAATTAATTAATTAACCATT+TGG + chr7_2:70784315-70784334 Msa1073330:intron 10.0%
!! AATTAATTAATTAACCATTT+GGG + chr7_2:70784316-70784335 Msa1073330:intron 10.0%
!!! AAACATACAATTTTTTTTTA+AGG + chr7_2:70784556-70784575 Msa1073330:intron 10.0%
!! GATAAAGAGAAATATTTAAA+GGG - chr7_2:70780606-70780625 None:intergenic 15.0%
!! AGATAAAGAGAAATATTTAA+AGG - chr7_2:70780607-70780626 None:intergenic 15.0%
!!! GTCAAATTTGTTTATAATTA+GGG - chr7_2:70781009-70781028 None:intergenic 15.0%
!!! AGTCAAATTTGTTTATAATT+AGG - chr7_2:70781010-70781029 None:intergenic 15.0%
!!! ATAAACAAATTTGACTTTTT+TGG + chr7_2:70781014-70781033 Msa1073330:intron 15.0%
!!! AAAAATGTTGTTTATAAATG+TGG + chr7_2:70781194-70781213 Msa1073330:intron 15.0%
!! TAGGTTTAGTAAATTAAATA+CGG + chr7_2:70781222-70781241 Msa1073330:intron 15.0%
!!! ATGTATTTTTTAATGTCTAA+AGG - chr7_2:70781307-70781326 None:intergenic 15.0%
!! CTATAAAATTTCATAACATT+TGG - chr7_2:70782151-70782170 None:intergenic 15.0%
!!! CAAATGTTATGAAATTTTAT+AGG + chr7_2:70782149-70782168 Msa1073330:intron 15.0%
!! ATTTACTAAATTAATAGAAG+GGG - chr7_2:70783020-70783039 None:intergenic 15.0%
!! TAAATAAACATTAGTTACTA+CGG + chr7_2:70784172-70784191 Msa1073330:intron 15.0%
!! ATTAATTAATTAACCATTTG+GGG + chr7_2:70784317-70784336 Msa1073330:intron 15.0%
!! CATTAAATATGAATACTTAA+GGG - chr7_2:70784485-70784504 None:intergenic 15.0%
!! ACATTAAATATGAATACTTA+AGG - chr7_2:70784486-70784505 None:intergenic 15.0%
!!! AATTTTTAGATTAGAAACTA+GGG - chr7_2:70785688-70785707 None:intergenic 15.0%
!!! AAATTTTTAGATTAGAAACT+AGG - chr7_2:70785689-70785708 None:intergenic 15.0%
!!! GTTAATTTTATTTTGTAAGA+AGG + chr7_2:70785766-70785785 Msa1073330:three_prime_UTR 15.0%
!! GATGAAAATAATGTAGTATA+TGG - chr7_2:70780030-70780049 None:intergenic 20.0%
!!! AATTTGTTTATAATTAGGGA+CGG - chr7_2:70781005-70781024 None:intergenic 20.0%
!!! ATATGCAAATTTGACTTTTT+TGG - chr7_2:70781103-70781122 None:intergenic 20.0%
!! AGTCAAATTTGCATATAATT+AGG + chr7_2:70781107-70781126 Msa1073330:intron 20.0%
!! GTCAAATTTGCATATAATTA+GGG + chr7_2:70781108-70781127 Msa1073330:intron 20.0%
!! ATAATATAGACAGACTATAA+TGG + chr7_2:70781142-70781161 Msa1073330:intron 20.0%
!! TCTTGTACTTAAACATAATT+TGG - chr7_2:70781348-70781367 None:intergenic 20.0%
!! GTATATTTGAACATAAATTG+TGG - chr7_2:70781389-70781408 None:intergenic 20.0%
!! TATAAATTCTTGTCCAAATT+TGG + chr7_2:70781548-70781567 Msa1073330:intron 20.0%
!! AAATTAATTGAGACCAAATT+TGG - chr7_2:70781564-70781583 None:intergenic 20.0%
!! AAATTTGGTCTCAATTAATT+TGG + chr7_2:70781563-70781582 Msa1073330:intron 20.0%
!!! ACAACTTTCTTATGTTTTTT+TGG + chr7_2:70781598-70781617 Msa1073330:intron 20.0%
!! ATAAACAATGTTGTTAACAT+TGG - chr7_2:70781680-70781699 None:intergenic 20.0%
!!! ATTGATTTCATGAACAATAT+GGG + chr7_2:70781743-70781762 Msa1073330:CDS 20.0%
!! TAAGAAGTGATATAATTGAA+GGG - chr7_2:70781918-70781937 None:intergenic 20.0%
!! ATAAGAAGTGATATAATTGA+AGG - chr7_2:70781919-70781938 None:intergenic 20.0%
!!! TACATGTTATTTTTTACCAT+TGG + chr7_2:70781989-70782008 Msa1073330:intron 20.0%
!! TTTGAGAAATACTACAAAAT+AGG - chr7_2:70782887-70782906 None:intergenic 20.0%
!!! ATTTTGTAGTATTTCTCAAA+AGG + chr7_2:70782887-70782906 Msa1073330:intron 20.0%
!!! TTTTGTAGTATTTCTCAAAA+GGG + chr7_2:70782888-70782907 Msa1073330:intron 20.0%
!! TCATGATTATATAATCTGAA+CGG + chr7_2:70783468-70783487 Msa1073330:intron 20.0%
!!! TTTTTTGTGCTAAAATCTAT+CGG - chr7_2:70783658-70783677 None:intergenic 20.0%
!! TTCAGATTTATCCTATTTAT+CGG - chr7_2:70783731-70783750 None:intergenic 20.0%
!!! TTTGATTTGAATAACATTGA+TGG + chr7_2:70783796-70783815 Msa1073330:intron 20.0%
!!! TTGATTTGAATAACATTGAT+GGG + chr7_2:70783797-70783816 Msa1073330:intron 20.0%
!! TTAAAAAGTCAGTAATAAGA+AGG - chr7_2:70784429-70784448 None:intergenic 20.0%
!! ACAAATTAATTATGAGTGAT+TGG + chr7_2:70784587-70784606 Msa1073330:intron 20.0%
!! TTTATCTCATCTAAAAGATA+TGG + chr7_2:70785133-70785152 Msa1073330:intron 20.0%
!! ATGTATTTATGTAACAGAAT+TGG + chr7_2:70785410-70785429 Msa1073330:intron 20.0%
! TTCATCCCAAATTCATAATA+TGG + chr7_2:70780044-70780063 Msa1073330:five_prime_UTR 25.0%
! ATAGCATATACTCTTTCATA+TGG + chr7_2:70780405-70780424 Msa1073330:five_prime_UTR 25.0%
! TAGCATATACTCTTTCATAT+GGG + chr7_2:70780406-70780425 Msa1073330:five_prime_UTR 25.0%
! ACATAAAAGGAAATATAGCT+TGG - chr7_2:70780451-70780470 None:intergenic 25.0%
!! AAAAGCAAGATTGTTGATAA+AGG + chr7_2:70780533-70780552 Msa1073330:CDS 25.0%
! ACTGCACTAGTATATTATAT+AGG + chr7_2:70780719-70780738 Msa1073330:CDS 25.0%
!! GATAACGAGAGTATAAATAA+TGG - chr7_2:70780871-70780890 None:intergenic 25.0%
! CATTCAATTATTGATGTATG+TGG + chr7_2:70781039-70781058 Msa1073330:intron 25.0%
! AATTTGCATATAATTAGGGA+CGG + chr7_2:70781112-70781131 Msa1073330:intron 25.0%
! GTTTATAAATGTGGTTAACT+AGG + chr7_2:70781203-70781222 Msa1073330:intron 25.0%
! GTAAATCACATTCAAAATTG+TGG - chr7_2:70781285-70781304 None:intergenic 25.0%
! GTACTTAAACATAATTTGGA+TGG - chr7_2:70781344-70781363 None:intergenic 25.0%
!!! GATTAATTGTGTTATTTGCA+TGG + chr7_2:70781442-70781461 Msa1073330:intron 25.0%
! GTTTATCAAAAAATCTTCTG+TGG + chr7_2:70781694-70781713 Msa1073330:CDS 25.0%
!!! CATTGATTTCATGAACAATA+TGG + chr7_2:70781742-70781761 Msa1073330:CDS 25.0%
! TATGAGAGATACTTCAAAAT+GGG - chr7_2:70781815-70781834 None:intergenic 25.0%
! TAAGTTTACAATGTTACTGT+TGG + chr7_2:70781845-70781864 Msa1073330:intron 25.0%
! GAACTAAAACAAAATTCCAA+TGG - chr7_2:70782008-70782027 None:intergenic 25.0%
! TTGTGCAACTTATATTTAAG+GGG - chr7_2:70782084-70782103 None:intergenic 25.0%
! GTTGTGCAACTTATATTTAA+GGG - chr7_2:70782085-70782104 None:intergenic 25.0%
! ATACAAATTTATTTGCTCCA+TGG + chr7_2:70782290-70782309 Msa1073330:intron 25.0%
! CCATAAATGTAGTCATAAAT+AGG - chr7_2:70782377-70782396 None:intergenic 25.0%
! CCTATTTATGACTACATTTA+TGG + chr7_2:70782374-70782393 Msa1073330:CDS 25.0%
! AATGGTATCTACATTTAATG+TGG + chr7_2:70782555-70782574 Msa1073330:CDS 25.0%
!! TATACCAAGATTTAAAACAC+AGG + chr7_2:70782676-70782695 Msa1073330:CDS 25.0%
!!! AATACCTGTGTTTTAAATCT+TGG - chr7_2:70782683-70782702 None:intergenic 25.0%
!! ATCTAAAATCACAAATGAGA+AGG - chr7_2:70782715-70782734 None:intergenic 25.0%
!!! TTTTTAACTGAATCAAGAGA+AGG - chr7_2:70782797-70782816 None:intergenic 25.0%
! TAAAAAATTTGCATTCTCTG+TGG + chr7_2:70782821-70782840 Msa1073330:intron 25.0%
! CTTGATTGAAGAAACAATTA+TGG + chr7_2:70782931-70782950 Msa1073330:CDS 25.0%
! AGGGAAAATATTAGTATTGT+TGG + chr7_2:70783126-70783145 Msa1073330:intron 25.0%
! ATTCGGAAGTTATAATTGAT+TGG - chr7_2:70783301-70783320 None:intergenic 25.0%
! TGGTTGGAAATAAAATCATT+CGG - chr7_2:70783318-70783337 None:intergenic 25.0%
! AGCAATCATCAAAATCTTAT+GGG + chr7_2:70783364-70783383 Msa1073330:intron 25.0%
!!! ATTCAAATGGCTTTTTTTTG+GGG - chr7_2:70783627-70783646 None:intergenic 25.0%
!!! CATTCAAATGGCTTTTTTTT+GGG - chr7_2:70783628-70783647 None:intergenic 25.0%
!!! TCATTCAAATGGCTTTTTTT+TGG - chr7_2:70783629-70783648 None:intergenic 25.0%
! AAAAAAAGCCATTTGAATGA+TGG + chr7_2:70783629-70783648 Msa1073330:intron 25.0%
!!! GATAGATTTTAGCACAAAAA+AGG + chr7_2:70783657-70783676 Msa1073330:intron 25.0%
! AAAAATACGTTCCGATAAAT+AGG + chr7_2:70783717-70783736 Msa1073330:intron 25.0%
! TGGAATTCGAAGTAAAATAA+TGG + chr7_2:70783772-70783791 Msa1073330:intron 25.0%
! ACTGTGAACATTATATTCAA+AGG + chr7_2:70783844-70783863 Msa1073330:CDS 25.0%
!! CAACTTTTATCTTCAATTGT+GGG - chr7_2:70783872-70783891 None:intergenic 25.0%
!! ACAACTTTTATCTTCAATTG+TGG - chr7_2:70783873-70783892 None:intergenic 25.0%
! TTGAAGATAAAAGTTGTAGA+TGG + chr7_2:70783876-70783895 Msa1073330:CDS 25.0%
! TTTATGCAGAAAAAATGTAC+AGG + chr7_2:70784004-70784023 Msa1073330:CDS 25.0%
! TCACTGTCTCATAATAAATA+TGG - chr7_2:70784262-70784281 None:intergenic 25.0%
! AATATGATTAACTCAAGTAG+AGG + chr7_2:70784518-70784537 Msa1073330:intron 25.0%
!! ATATATTTCGAGTCGATATT+TGG - chr7_2:70784658-70784677 None:intergenic 25.0%
!! AATTTGCTCTCTGAAAAAAT+TGG - chr7_2:70784706-70784725 None:intergenic 25.0%
!!! TTTTTTGATAAATTGCAAGC+AGG + chr7_2:70784800-70784819 Msa1073330:intron 25.0%
! AAAAAACCGTCAAAGTTATA+TGG + chr7_2:70784941-70784960 Msa1073330:intron 25.0%
! CTAAATCCATATAACTTTGA+CGG - chr7_2:70784950-70784969 None:intergenic 25.0%
! GATTCCATAAAATTATCAAG+AGG - chr7_2:70785042-70785061 None:intergenic 25.0%
!!! AGACATTGATTCATCATTTA+AGG - chr7_2:70785064-70785083 None:intergenic 25.0%
! TATTATGAGTCTAACATAAC+AGG + chr7_2:70785102-70785121 Msa1073330:intron 25.0%
! ATCTAAAAGATATGGTTAGT+TGG + chr7_2:70785141-70785160 Msa1073330:intron 25.0%
! TATAATAGGTACTATACTGA+AGG - chr7_2:70785352-70785371 None:intergenic 25.0%
! TTTGTGAGAATATTCTTTAG+AGG - chr7_2:70785574-70785593 None:intergenic 25.0%
!!! GTTTGTTATGCATTAATACA+CGG + chr7_2:70785652-70785671 Msa1073330:three_prime_UTR 25.0%
!!! ACATTTTGGAAATTGAAACA+TGG - chr7_2:70785720-70785739 None:intergenic 25.0%
!! GTAGTAATTTCAACACATTT+TGG - chr7_2:70785734-70785753 None:intergenic 25.0%
GGAAGCCATATTATGAATTT+GGG - chr7_2:70780052-70780071 None:intergenic 30.0%
TGGAAGCCATATTATGAATT+TGG - chr7_2:70780053-70780072 None:intergenic 30.0%
AGCATATACTCTTTCATATG+GGG + chr7_2:70780407-70780426 Msa1073330:five_prime_UTR 30.0%
AGCATTCTGATCAACATAAA+AGG - chr7_2:70780464-70780483 None:intergenic 30.0%
GTGAAATAGAAATCCAAATC+TGG - chr7_2:70780493-70780512 None:intergenic 30.0%
AAGGGAAATAACTAACCAAT+TGG - chr7_2:70780588-70780607 None:intergenic 30.0%
AGGATACATGATATTTCCTA+TGG + chr7_2:70780739-70780758 Msa1073330:CDS 30.0%
CAATAGTATAAAAACTCCAC+TGG - chr7_2:70780827-70780846 None:intergenic 30.0%
! CAGTGGAGTTTTTATACTAT+TGG + chr7_2:70780825-70780844 Msa1073330:CDS 30.0%
AAAGAGTTCATACAAGTGAT+AGG - chr7_2:70780926-70780945 None:intergenic 30.0%
GATGTATGTGGTTCATATTA+TGG + chr7_2:70781051-70781070 Msa1073330:intron 30.0%
GTATGAGAGATACTTCAAAA+TGG - chr7_2:70781816-70781835 None:intergenic 30.0%
GTAACATTGTAAACTTACGA+TGG - chr7_2:70781842-70781861 None:intergenic 30.0%
CGTTGTGCAACTTATATTTA+AGG - chr7_2:70782086-70782105 None:intergenic 30.0%
!! ATCACTCTACTTTTGATCAT+TGG - chr7_2:70782220-70782239 None:intergenic 30.0%
AGACTCTGATTAATGTAGAA+AGG - chr7_2:70782270-70782289 None:intergenic 30.0%
TCCATTTATCAAATGCGTTT+AGG + chr7_2:70782497-70782516 Msa1073330:CDS 30.0%
GATACCATTTAGATGTTTGA+GGG - chr7_2:70782544-70782563 None:intergenic 30.0%
AGATACCATTTAGATGTTTG+AGG - chr7_2:70782545-70782564 None:intergenic 30.0%
AGCTTAGAGAACATTGTAAA+GGG - chr7_2:70782581-70782600 None:intergenic 30.0%
AAGCTTAGAGAACATTGTAA+AGG - chr7_2:70782582-70782601 None:intergenic 30.0%
TTGTAGCTTAAGATCATTGA+AGG - chr7_2:70782648-70782667 None:intergenic 30.0%
ATGATCTTAAGCTACAAAGT+TGG + chr7_2:70782651-70782670 Msa1073330:CDS 30.0%
TTACCAATGAAATACTCGTT+TGG + chr7_2:70782858-70782877 Msa1073330:intron 30.0%
AAACCAAACGAGTATTTCAT+TGG - chr7_2:70782864-70782883 None:intergenic 30.0%
GATTGAAGAAACAATTATGG+AGG + chr7_2:70782934-70782953 Msa1073330:CDS 30.0%
! AAGTTTAGGACTTCTAAATC+AGG + chr7_2:70782982-70783001 Msa1073330:CDS 30.0%
TATGAGTGTTAGTTCATACT+AGG + chr7_2:70783070-70783089 Msa1073330:intron 30.0%
GAGCAATCATCAAAATCTTA+TGG + chr7_2:70783363-70783382 Msa1073330:intron 30.0%
TCAGATCTTAGAATCAGAAT+AGG + chr7_2:70783533-70783552 Msa1073330:intron 30.0%
CAGATCTTAGAATCAGAATA+GGG + chr7_2:70783534-70783553 Msa1073330:intron 30.0%
AGCAATGAACTTATTTGCTT+AGG + chr7_2:70783584-70783603 Msa1073330:intron 30.0%
GCAATGAACTTATTTGCTTA+GGG + chr7_2:70783585-70783604 Msa1073330:intron 30.0%
CAATGAACTTATTTGCTTAG+GGG + chr7_2:70783586-70783605 Msa1073330:intron 30.0%
AATGAACTTATTTGCTTAGG+GGG + chr7_2:70783587-70783606 Msa1073330:intron 30.0%
TTTAGCACAAAAAAGGCAAT+CGG + chr7_2:70783664-70783683 Msa1073330:intron 30.0%
TTTAGGAATGTTGTTCAACA+CGG - chr7_2:70783922-70783941 None:intergenic 30.0%
! ATTAATTAACCATTTGGGGT+TGG + chr7_2:70784321-70784340 Msa1073330:intron 30.0%
! TTAATTAACCATTTGGGGTT+GGG + chr7_2:70784322-70784341 Msa1073330:intron 30.0%
!!! TATTACACGTGATTTTTTGC+AGG + chr7_2:70784675-70784694 Msa1073330:intron 30.0%
AGCTTATAGATCTTAGACAA+AGG + chr7_2:70784844-70784863 Msa1073330:CDS 30.0%
GCTTATAGATCTTAGACAAA+GGG + chr7_2:70784845-70784864 Msa1073330:CDS 30.0%
TAAAATTATCAAGAGGTGGA+TGG - chr7_2:70785035-70785054 None:intergenic 30.0%
!! TCCACCTCTTGATAATTTTA+TGG + chr7_2:70785035-70785054 Msa1073330:intron 30.0%
TCCATAAAATTATCAAGAGG+TGG - chr7_2:70785039-70785058 None:intergenic 30.0%
! CAATCTTTTCGCATTTTCTT+TGG - chr7_2:70785240-70785259 None:intergenic 30.0%
TGTGAATTCATGAATGTAGT+AGG - chr7_2:70785294-70785313 None:intergenic 30.0%
! TGAGAATATTCTTTAGAGGT+TGG - chr7_2:70785570-70785589 None:intergenic 30.0%
AATTAACCAAGTGTGACAAA+TGG + chr7_2:70785592-70785611 Msa1073330:exon 30.0%
ATTAACCAAGTGTGACAAAT+GGG + chr7_2:70785593-70785612 Msa1073330:exon 30.0%
! AGAGGAAGTATATCGATAAT+GGG - chr7_2:70785621-70785640 None:intergenic 30.0%
! TAGAGGAAGTATATCGATAA+TGG - chr7_2:70785622-70785641 None:intergenic 30.0%
AACAAACTTTGTCAAAGTAG+AGG - chr7_2:70785639-70785658 None:intergenic 30.0%
GAAATTGAAACATGGATACA+TGG - chr7_2:70785712-70785731 None:intergenic 30.0%
GGAACTCTTTATATAGTGCT+TGG - chr7_2:70780009-70780028 None:intergenic 35.0%
TCTTTGTCTTTGATGTGACT+TGG + chr7_2:70780335-70780354 Msa1073330:five_prime_UTR 35.0%
!! TCTTTGATGTGACTTGGTTA+TGG + chr7_2:70780341-70780360 Msa1073330:five_prime_UTR 35.0%
TATATGCTATGAGCAATCCA+CGG - chr7_2:70780395-70780414 None:intergenic 35.0%
!!! TGCTTTTTCCTTTAGCAGTT+TGG - chr7_2:70780520-70780539 None:intergenic 35.0%
!! TATCGACTTGTTCGAATTCA+AGG - chr7_2:70780559-70780578 None:intergenic 35.0%
AAGTCGATAGAGAAACCAAT+TGG + chr7_2:70780570-70780589 Msa1073330:CDS 35.0%
TTTGATTGTGTGACATTTGC+AGG + chr7_2:70780678-70780697 Msa1073330:intron 35.0%
TTGATTGTGTGACATTTGCA+GGG + chr7_2:70780679-70780698 Msa1073330:intron 35.0%
CATGGTAAATTAGAAGCCAT+AGG - chr7_2:70780758-70780777 None:intergenic 35.0%
CTATGGCTTCTAATTTACCA+TGG + chr7_2:70780756-70780775 Msa1073330:CDS 35.0%
TGTTTATAATTAGGGACGGA+GGG - chr7_2:70781001-70781020 None:intergenic 35.0%
TTGTTTATAATTAGGGACGG+AGG - chr7_2:70781002-70781021 None:intergenic 35.0%
AAGTAAGAGAGGAGTTTCTT+AGG - chr7_2:70781791-70781810 None:intergenic 35.0%
TCAAAATGGGAAAGTAAGAG+AGG - chr7_2:70781802-70781821 None:intergenic 35.0%
GCCTAAACGCATTTGATAAA+TGG - chr7_2:70782501-70782520 None:intergenic 35.0%
TGTTCTCTAAGCTTATGACT+TGG + chr7_2:70782588-70782607 Msa1073330:CDS 35.0%
! AAGCTTATGACTTGGATTTG+TGG + chr7_2:70782596-70782615 Msa1073330:CDS 35.0%
! AGCTTATGACTTGGATTTGT+GGG + chr7_2:70782597-70782616 Msa1073330:CDS 35.0%
!! GGTGTTGCTTTCTAAAACAA+AGG - chr7_2:70782627-70782646 None:intergenic 35.0%
AAAACATAGACATGCCAACT+AGG - chr7_2:70782760-70782779 None:intergenic 35.0%
ATTATGGAGGCTGAGTTAAA+TGG + chr7_2:70782947-70782966 Msa1073330:CDS 35.0%
! GATCAGATACAATGTTGACT+TGG - chr7_2:70783239-70783258 None:intergenic 35.0%
AGTCAACATTGTATCTGATC+AGG + chr7_2:70783239-70783258 Msa1073330:intron 35.0%
CTTAAAATTGCACACTTGGT+TGG - chr7_2:70783334-70783353 None:intergenic 35.0%
! CAACCAAGTGTGCAATTTTA+AGG + chr7_2:70783332-70783351 Msa1073330:intron 35.0%
ACACCTTAAAATTGCACACT+TGG - chr7_2:70783338-70783357 None:intergenic 35.0%
TCATCAAAATCTTATGGGCT+AGG + chr7_2:70783369-70783388 Msa1073330:intron 35.0%
!!! TGAAATGTTTTAACGTGTGC+TGG - chr7_2:70783516-70783535 None:intergenic 35.0%
ATCGGATTCCATCATTCAAA+TGG - chr7_2:70783640-70783659 None:intergenic 35.0%
!! AGCACTTGATTTGTCTCTTT+AGG - chr7_2:70783939-70783958 None:intergenic 35.0%
! TCTGCATAAAGCATTAGCAA+TGG - chr7_2:70783994-70784013 None:intergenic 35.0%
! ATTTTGTTGACGCAATGCAT+AGG - chr7_2:70784077-70784096 None:intergenic 35.0%
ACAAGCTGAGATTCAAACTT+TGG - chr7_2:70784385-70784404 None:intergenic 35.0%
GTCAGTAATAAGAAGGTTGA+TGG - chr7_2:70784422-70784441 None:intergenic 35.0%
TTTGATAAATTGCAAGCAGG+TGG + chr7_2:70784803-70784822 Msa1073330:intron 35.0%
TTCACCAATCAATACTCCAA+AGG + chr7_2:70784896-70784915 Msa1073330:CDS 35.0%
AAAGAAAATGGACCAACCTT+TGG - chr7_2:70784915-70784934 None:intergenic 35.0%
! TATGGTTAGTTGGAGATGAA+TGG + chr7_2:70785151-70785170 Msa1073330:CDS 35.0%
! ATGGTTAGTTGGAGATGAAT+GGG + chr7_2:70785152-70785171 Msa1073330:CDS 35.0%
ATGGGATGAATATGAGCAAA+TGG + chr7_2:70785170-70785189 Msa1073330:CDS 35.0%
GGTATGAACAATGATCCTTT+CGG - chr7_2:70785201-70785220 None:intergenic 35.0%
TTTGGAGGGAAATGAGAAAA+TGG - chr7_2:70785222-70785241 None:intergenic 35.0%
! CTTTTCGCATTTTCTTTGGA+GGG - chr7_2:70785236-70785255 None:intergenic 35.0%
! TCTTTTCGCATTTTCTTTGG+AGG - chr7_2:70785237-70785256 None:intergenic 35.0%
TAATCATTGCTGGTGTATAG+TGG - chr7_2:70785269-70785288 None:intergenic 35.0%
GGAATAATTCATGCCTTAGA+AGG + chr7_2:70785469-70785488 Msa1073330:CDS 35.0%
TAATTCATGCCTTAGAAGGA+TGG + chr7_2:70785473-70785492 Msa1073330:CDS 35.0%
ATGAACATTCCATCCTTCTA+AGG - chr7_2:70785485-70785504 None:intergenic 35.0%
CATAATATGGCTTCCAAACC+AGG + chr7_2:70780057-70780076 Msa1073330:five_prime_UTR 40.0%
ATATGCTATGAGCAATCCAC+GGG - chr7_2:70780394-70780413 None:intergenic 40.0%
ACTCTTTCATATGGGGTGAA+AGG + chr7_2:70780414-70780433 Msa1073330:five_prime_UTR 40.0%
CTCTTTCATATGGGGTGAAA+GGG + chr7_2:70780415-70780434 Msa1073330:five_prime_UTR 40.0%
GGAAATATAGCTTGGTACAC+TGG - chr7_2:70780443-70780462 None:intergenic 40.0%
GAATGCTACACAACCAGATT+TGG + chr7_2:70780477-70780496 Msa1073330:CDS 40.0%
TCACGTTACCAAACTGCTAA+AGG + chr7_2:70780509-70780528 Msa1073330:CDS 40.0%
TGGCTTCTAATTTACCATGG+TGG + chr7_2:70780759-70780778 Msa1073330:CDS 40.0%
CTTACAGCAATATTGCATGC+TGG + chr7_2:70780800-70780819 Msa1073330:CDS 40.0%
GCTCAGTGACAATTGAAGAA+TGG - chr7_2:70780904-70780923 None:intergenic 40.0%
TTGCATATAATTAGGGACGG+AGG + chr7_2:70781115-70781134 Msa1073330:intron 40.0%
TGCATATAATTAGGGACGGA+GGG + chr7_2:70781116-70781135 Msa1073330:intron 40.0%
ATGACAAATGCTCCGCAAAT+GGG - chr7_2:70781637-70781656 None:intergenic 40.0%
TATGACAAATGCTCCGCAAA+TGG - chr7_2:70781638-70781657 None:intergenic 40.0%
ACTCCATCACACCAAATTCA+GGG + chr7_2:70782331-70782350 Msa1073330:CDS 40.0%
TGAGTAGTTAGCCCTGAATT+TGG - chr7_2:70782345-70782364 None:intergenic 40.0%
! AGCCTCATTGATTAGACCAA+AGG + chr7_2:70782430-70782449 Msa1073330:CDS 40.0%
CTCCTTTGGTCTAATCAATG+AGG - chr7_2:70782435-70782454 None:intergenic 40.0%
TGTGTTAAATGCACCACATC+TGG - chr7_2:70782461-70782480 None:intergenic 40.0%
CCATTTAGATGTTTGAGGGT+TGG - chr7_2:70782540-70782559 None:intergenic 40.0%
CCAACCCTCAAACATCTAAA+TGG + chr7_2:70782537-70782556 Msa1073330:CDS 40.0%
GGAGCAAAGGTGATAAGTTT+AGG + chr7_2:70782968-70782987 Msa1073330:CDS 40.0%
AGTGTTAGTTCATACTAGGC+TGG + chr7_2:70783074-70783093 Msa1073330:intron 40.0%
!! TGTTGACTTGGTGGTTTAGA+TGG - chr7_2:70783227-70783246 None:intergenic 40.0%
!! CAGATACAATGTTGACTTGG+TGG - chr7_2:70783236-70783255 None:intergenic 40.0%
AAAAAACTAATAGGGCCCCA+AGG - chr7_2:70783400-70783419 None:intergenic 40.0%
!!! AATGTTTTAACGTGTGCTGG+AGG - chr7_2:70783513-70783532 None:intergenic 40.0%
ACAAATCAAGTGCTTCTTCG+AGG + chr7_2:70783945-70783964 Msa1073330:CDS 40.0%
TCTTCGAGGCAAGTTCAATA+AGG + chr7_2:70783959-70783978 Msa1073330:CDS 40.0%
!! GGGATACAACGTTGATTTGA+CGG - chr7_2:70784465-70784484 None:intergenic 40.0%
GCAGGTGGCTGTATTATATA+AGG + chr7_2:70784818-70784837 Msa1073330:intron 40.0%
CATCATGTCGAAAGAAAGCT+TGG + chr7_2:70784869-70784888 Msa1073330:CDS 40.0%
!! CCAACCTTTGGAGTATTGAT+TGG - chr7_2:70784903-70784922 None:intergenic 40.0%
CCAATCAATACTCCAAAGGT+TGG + chr7_2:70784900-70784919 Msa1073330:intron 40.0%
TGGATGGTGTGTTTAATGGT+GGG - chr7_2:70785019-70785038 None:intergenic 40.0%
GTAGTAGGAGTAATCATTGC+TGG - chr7_2:70785279-70785298 None:intergenic 40.0%
CATGAATTCACACTCTTGTG+AGG + chr7_2:70785302-70785321 Msa1073330:CDS 40.0%
CATGCACTCATTACTCTTCT+TGG - chr7_2:70785439-70785458 None:intergenic 40.0%
CAAGAAGAGTAATGAGTGCA+TGG + chr7_2:70785437-70785456 Msa1073330:CDS 40.0%
GGATGGAATGTTCATGAATG+TGG + chr7_2:70785490-70785509 Msa1073330:CDS 40.0%
ACTTGCTTCCCATACTTTCT+CGG - chr7_2:70785533-70785552 None:intergenic 40.0%
TGGGAAGCAAGTATTCTTCA+TGG + chr7_2:70785541-70785560 Msa1073330:CDS 40.0%
! TTACCATGGTGGAGAACAGA+TGG + chr7_2:70780770-70780789 Msa1073330:CDS 45.0%
AATATTGCATGCTGGACCAG+TGG + chr7_2:70780808-70780827 Msa1073330:CDS 45.0%
TCTTCTGTGGCTGCACTATA+TGG + chr7_2:70781707-70781726 Msa1073330:CDS 45.0%
CACTCCATCACACCAAATTC+AGG + chr7_2:70782330-70782349 Msa1073330:CDS 45.0%
!! TAGCCCTGAATTTGGTGTGA+TGG - chr7_2:70782337-70782356 None:intergenic 45.0%
GGCTTCATATGTAGCATCTG+TGG - chr7_2:70782414-70782433 None:intergenic 45.0%
TGTTTGAGGGTTGGAAGCTA+AGG - chr7_2:70782531-70782550 None:intergenic 45.0%
! TGGCATGTCTATGTTTTCCC+TGG + chr7_2:70782763-70782782 Msa1073330:intron 45.0%
AAGAGAAGGACATGCATCCA+GGG - chr7_2:70782783-70782802 None:intergenic 45.0%
GGCTGAGTTAAATGGAGCAA+AGG + chr7_2:70782955-70782974 Msa1073330:CDS 45.0%
!! CAAAATCTTATGGGCTAGGC+TGG + chr7_2:70783373-70783392 Msa1073330:intron 45.0%
AGGGCATGCGAGAAATTCAT+AGG + chr7_2:70783553-70783572 Msa1073330:intron 45.0%
GGGCATGCGAGAAATTCATA+GGG + chr7_2:70783554-70783573 Msa1073330:intron 45.0%
!! CGTTGATTTGACGGCTAGAA+TGG - chr7_2:70784456-70784475 None:intergenic 45.0%
GGATGGTGTGTTTAATGGTG+GGG - chr7_2:70785018-70785037 None:intergenic 45.0%
GTGGATGGTGTGTTTAATGG+TGG - chr7_2:70785020-70785039 None:intergenic 45.0%
GAGGTGGATGGTGTGTTTAA+TGG - chr7_2:70785023-70785042 None:intergenic 45.0%
TCATTGCTGGTGTATAGTGG+TGG - chr7_2:70785266-70785285 None:intergenic 45.0%
! TGCTTAGCACCGAGAAAGTA+TGG + chr7_2:70785521-70785540 Msa1073330:CDS 45.0%
! GCTTAGCACCGAGAAAGTAT+GGG + chr7_2:70785522-70785541 Msa1073330:CDS 45.0%
!! ATTAAAAAAAAAAACTAATA+GGG - chr7_2:70783408-70783427 None:intergenic 5.0%
!! TATTAAAAAAAAAAACTAAT+AGG - chr7_2:70783409-70783428 None:intergenic 5.0%
!!! TTTTTTAAAATAAAAGAAAA+TGG - chr7_2:70784927-70784946 None:intergenic 5.0%
!!! ATTTTAATTTATGTTATAAT+AGG - chr7_2:70785366-70785385 None:intergenic 5.0%
GTCTGTAAGGATGCCTGGTT+TGG - chr7_2:70780073-70780092 None:intergenic 50.0%
AACCAGGCATCCTTACAGAC+TGG + chr7_2:70780073-70780092 Msa1073330:five_prime_UTR 50.0%
GTTTCCAAGGCCAGTCTGTA+AGG - chr7_2:70780086-70780105 None:intergenic 50.0%
AGTTCGTGATTCTAAGCCCG+TGG + chr7_2:70780375-70780394 Msa1073330:five_prime_UTR 50.0%
ACACCATCTGTTCTCCACCA+TGG - chr7_2:70780776-70780795 None:intergenic 50.0%
! ATGGTGGAGAACAGATGGTG+TGG + chr7_2:70780775-70780794 Msa1073330:CDS 50.0%
AGCTGTGACACACCCATTTG+CGG + chr7_2:70781622-70781641 Msa1073330:intron 50.0%
ATTTGCTCCATGGCATCCAC+AGG + chr7_2:70782300-70782319 Msa1073330:intron 50.0%
AGTGAAACCTGTGGATGCCA+TGG - chr7_2:70782310-70782329 None:intergenic 50.0%
GATGGAGTGAGTGAAACCTG+TGG - chr7_2:70782319-70782338 None:intergenic 50.0%
ACCAAAGGAGTCACCAGATG+TGG + chr7_2:70782445-70782464 Msa1073330:CDS 50.0%
ACCACATCTGGTGACTCCTT+TGG - chr7_2:70782449-70782468 None:intergenic 50.0%
CGCAAAAGTGACGACCTAGT+TGG + chr7_2:70782743-70782762 Msa1073330:intron 50.0%
CAAGAGAAGGACATGCATCC+AGG - chr7_2:70782784-70782803 None:intergenic 50.0%
! GTGTGCTGGAGGTTTTTACG+AGG - chr7_2:70783502-70783521 None:intergenic 50.0%
CCATGAAACCCAACCCCAAA+TGG - chr7_2:70784333-70784352 None:intergenic 50.0%
! CCATTTGGGGTTGGGTTTCA+TGG + chr7_2:70784330-70784349 Msa1073330:intron 50.0%
!! GAGCAAATGGAAGCACCGAA+AGG + chr7_2:70785183-70785202 Msa1073330:CDS 50.0%
ATGAGTGCATGGCGTATTGC+TGG + chr7_2:70785448-70785467 Msa1073330:CDS 50.0%
GGGAACCCATTTGTCACACT+TGG - chr7_2:70785601-70785620 None:intergenic 50.0%
!! GCATCCTTACAGACTGGCCT+TGG + chr7_2:70780079-70780098 Msa1073330:five_prime_UTR 55.0%
!! AGACTGGCCTTGGAAACCTC+TGG + chr7_2:70780089-70780108 Msa1073330:five_prime_UTR 55.0%
!! GACTGGCCTTGGAAACCTCT+GGG + chr7_2:70780090-70780109 Msa1073330:five_prime_UTR 55.0%
!! ACTGGCCTTGGAAACCTCTG+GGG + chr7_2:70780091-70780110 Msa1073330:five_prime_UTR 55.0%
AAGCTCCCCAGAGGTTTCCA+AGG - chr7_2:70780099-70780118 None:intergenic 55.0%
! GAAACCTCTGGGGAGCTTCA+AGG + chr7_2:70780101-70780120 Msa1073330:five_prime_UTR 55.0%
AGAACCTTGAAGCTCCCCAG+AGG - chr7_2:70780108-70780127 None:intergenic 55.0%
!! TTATGGGCTAGGCTGGACCT+TGG + chr7_2:70783380-70783399 Msa1073330:intron 55.0%
!! TATGGGCTAGGCTGGACCTT+GGG + chr7_2:70783381-70783400 Msa1073330:intron 55.0%
TCAACACGGTTGCAGCAGCT+AGG - chr7_2:70783908-70783927 None:intergenic 55.0%
GGCCAGTCTGTAAGGATGCC+TGG - chr7_2:70780078-70780097 None:intergenic 60.0%
!! ATGGGCTAGGCTGGACCTTG+GGG + chr7_2:70783382-70783401 Msa1073330:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 70779999 70785828 70779999 ID=Msa1073330;Name=Msa1073330
chr7_2 mRNA 70779999 70785828 70779999 ID=Msa1073330-mRNA-1;Parent=Msa1073330;Name=Msa1073330-mRNA-1;_AED=0.13;_eAED=0.13;_QI=442|1|1|1|0.8|0.63|11|207|567
chr7_2 exon 70779999 70780206 70779999 ID=Msa1073330-mRNA-1:exon:15962;Parent=Msa1073330-mRNA-1
chr7_2 exon 70780233 70780591 70780233 ID=Msa1073330-mRNA-1:exon:15963;Parent=Msa1073330-mRNA-1
chr7_2 exon 70780700 70780932 70780700 ID=Msa1073330-mRNA-1:exon:15964;Parent=Msa1073330-mRNA-1
chr7_2 exon 70781624 70781843 70781624 ID=Msa1073330-mRNA-1:exon:15965;Parent=Msa1073330-mRNA-1
chr7_2 exon 70782322 70782697 70782322 ID=Msa1073330-mRNA-1:exon:15966;Parent=Msa1073330-mRNA-1
chr7_2 exon 70782896 70783003 70782896 ID=Msa1073330-mRNA-1:exon:15967;Parent=Msa1073330-mRNA-1
chr7_2 exon 70783825 70784025 70783825 ID=Msa1073330-mRNA-1:exon:15968;Parent=Msa1073330-mRNA-1
chr7_2 exon 70784822 70784917 70784822 ID=Msa1073330-mRNA-1:exon:15969;Parent=Msa1073330-mRNA-1
chr7_2 exon 70785150 70785323 70785150 ID=Msa1073330-mRNA-1:exon:15970;Parent=Msa1073330-mRNA-1
chr7_2 exon 70785427 70785787 70785427 ID=Msa1073330-mRNA-1:exon:15971;Parent=Msa1073330-mRNA-1
chr7_2 exon 70785812 70785828 70785812 ID=Msa1073330-mRNA-1:exon:15972;Parent=Msa1073330-mRNA-1
chr7_2 five_prime_UTR 70779999 70780206 70779999 ID=Msa1073330-mRNA-1:five_prime_utr;Parent=Msa1073330-mRNA-1
chr7_2 five_prime_UTR 70780233 70780466 70780233 ID=Msa1073330-mRNA-1:five_prime_utr;Parent=Msa1073330-mRNA-1
chr7_2 CDS 70780467 70780591 70780467 ID=Msa1073330-mRNA-1:cds;Parent=Msa1073330-mRNA-1
chr7_2 CDS 70780700 70780932 70780700 ID=Msa1073330-mRNA-1:cds;Parent=Msa1073330-mRNA-1
chr7_2 CDS 70781624 70781843 70781624 ID=Msa1073330-mRNA-1:cds;Parent=Msa1073330-mRNA-1
chr7_2 CDS 70782322 70782697 70782322 ID=Msa1073330-mRNA-1:cds;Parent=Msa1073330-mRNA-1
chr7_2 CDS 70782896 70783003 70782896 ID=Msa1073330-mRNA-1:cds;Parent=Msa1073330-mRNA-1
chr7_2 CDS 70783825 70784025 70783825 ID=Msa1073330-mRNA-1:cds;Parent=Msa1073330-mRNA-1
chr7_2 CDS 70784822 70784917 70784822 ID=Msa1073330-mRNA-1:cds;Parent=Msa1073330-mRNA-1
chr7_2 CDS 70785150 70785323 70785150 ID=Msa1073330-mRNA-1:cds;Parent=Msa1073330-mRNA-1
chr7_2 CDS 70785427 70785597 70785427 ID=Msa1073330-mRNA-1:cds;Parent=Msa1073330-mRNA-1
chr7_2 three_prime_UTR 70785598 70785787 70785598 ID=Msa1073330-mRNA-1:three_prime_utr;Parent=Msa1073330-mRNA-1
chr7_2 three_prime_UTR 70785812 70785828 70785812 ID=Msa1073330-mRNA-1:three_prime_utr;Parent=Msa1073330-mRNA-1
Gene Sequence

>Msa1073330

ATGTTGATCAGAATGCTACACAACCAGATTTGGATTTCTATTTCACGTTACCAAACTGCTAAAGGAAAAAGCAAGATTGTTGATAAAGGCCTTGAATTCGAACAAGTCGATAGAGAAACCAATTGGGATGATCAAATATTATTCACTGCACTAGTATATTATATAGGATACATGATATTTCCTATGGCTTCTAATTTACCATGGTGGAGAACAGATGGTGTGGTTCTTACAGCAATATTGCATGCTGGACCAGTGGAGTTTTTATACTATTGGCTACATAGAGCACTTCATCACCATTATTTATACTCTCGTTATCATTCTCATCACCATTCTTCAATTGTCACTGAGCCTATCACTTCTGTGACACACCCATTTGCGGAGCATTTGTCATATTTTACACTTTTTGCTATACCAATGTTAACAACATTGTTTATCAAAAAATCTTCTGTGGCTGCACTATATGGCTATATCTTTTACATTGATTTCATGAACAATATGGGTCATTGCAACTTTGAGTTCTTTCCTAAGAAACTCCTCTCTTACTTTCCCATTTTGAAGTATCTCTCATACACACCATCGTTTCACTCACTCCATCACACCAAATTCAGGGCTAACTACTCACTTTTCATGCCTATTTATGACTACATTTATGGTACAGTGCATAAATCCACAGATGCTACATATGAAGCCTCATTGATTAGACCAAAGGAGTCACCAGATGTGGTGCATTTAACACATTTAACTACACTTGATTCCATTTATCAAATGCGTTTAGGCTTTGCTTCCTTAGCTTCCAACCCTCAAACATCTAAATGGTATCTACATTTAATGTGGCCCTTTACAATGTTCTCTAAGCTTATGACTTGGATTTGTGGGCGTGCCTTTGTTTTAGAAAGCAACACCTTCAATGATCTTAAGCTACAAAGTTGGATTATACCAAGATTTAAAACACAGTATTTCTCAAAAGGGCAGAGCATAACATTGAACAACTTGATTGAAGAAACAATTATGGAGGCTGAGTTAAATGGAGCAAAGGTGATAAGTTTAGGACTTCTAAATCAGAAACATCAGCTGAATGCACACTGTGAACATTATATTCAAAGGTTCCCACAATTGAAGATAAAAGTTGTAGATGGAAGTAGCCTAGCTGCTGCAACCGTGTTGAACAACATTCCTAAAGAGACAAATCAAGTGCTTCTTCGAGGCAAGTTCAATAAGGTTGCGTTTGCCATTGCTAATGCTTTATGCAGAAAAAATGTACAGGTGGCTGTATTATATAAGGATGAGCTTATAGATCTTAGACAAAGGGTCATCATGTCGAAAGAAAGCTTGGTTGTTTCACCAATCAATACTCCAAAGATATGGTTAGTTGGAGATGAATGGGATGAATATGAGCAAATGGAAGCACCGAAAGGATCATTGTTCATACCATTTTCTCATTTCCCTCCAAAGAAAATGCGAAAAGATTGCTTCCACCACTATACACCAGCAATGATTACTCCTACTACATTCATGAATTCACACTCTTGTGAGAATTGGCTTCCAAGAAGAGTAATGAGTGCATGGCGTATTGCTGGAATAATTCATGCCTTAGAAGGATGGAATGTTCATGAATGTGGTGACACTATGCTTAGCACCGAGAAAGTATGGGAAGCAAGTATTCTTCATGGTTTCCAACCTCTAAAGAATATTCTCACAAATTAA

Protein sequence

>Msa1073330

MLIRMLHNQIWISISRYQTAKGKSKIVDKGLEFEQVDRETNWDDQILFTALVYYIGYMIFPMASNLPWWRTDGVVLTAILHAGPVEFLYYWLHRALHHHYLYSRYHSHHHSSIVTEPITSVTHPFAEHLSYFTLFAIPMLTTLFIKKSSVAALYGYIFYIDFMNNMGHCNFEFFPKKLLSYFPILKYLSYTPSFHSLHHTKFRANYSLFMPIYDYIYGTVHKSTDATYEASLIRPKESPDVVHLTHLTTLDSIYQMRLGFASLASNPQTSKWYLHLMWPFTMFSKLMTWICGRAFVLESNTFNDLKLQSWIIPRFKTQYFSKGQSITLNNLIEETIMEAELNGAKVISLGLLNQKHQLNAHCEHYIQRFPQLKIKVVDGSSLAAATVLNNIPKETNQVLLRGKFNKVAFAIANALCRKNVQVAVLYKDELIDLRQRVIMSKESLVVSPINTPKIWLVGDEWDEYEQMEAPKGSLFIPFSHFPPKKMRKDCFHHYTPAMITPTTFMNSHSCENWLPRRVMSAWRIAGIIHALEGWNVHECGDTMLSTEKVWEASILHGFQPLKNILTN*