AlfalfaGEDB | Msa1033570

M. sativa cultivar zhongmu-4 / Msa1033570

KEGG: K15404
GO: -
PFAM: PF12076.11

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1033570	XP_003625020.2	86.548	617	23	4	1	559	10	624	0.0	1085

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1033570	sp\|F4HVY0\|CER1_ARATH	51.452	620	234	6	1	553	1	620	0.0	655

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1033570	A0A396H383	86.548	617	23	4	1	559	10	624	0.0	1085

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0212150	Msa1033570	0.803155	3.988720e-49	-8.615850e-47
Msa0298240	Msa1033570	0.804445	2.153028e-49	-8.615850e-47
Msa0451400	Msa1033570	0.800165	1.638142e-48	-8.615850e-47
Msa0538220	Msa1033570	0.800008	1.762994e-48	-8.615850e-47
Msa0591790	Msa1033570	0.803054	4.186069e-49	-8.615850e-47
Msa0669840	Msa1033570	0.814722	1.333187e-51	-8.615850e-47
Msa0688500	Msa1033570	0.808993	2.356728e-50	-8.615850e-47
Msa0851020	Msa1033570	0.806831	6.795594e-50	-8.615850e-47
Msa1033570	Msa1073330	0.842003	3.372011e-58	-8.615850e-47
Msa1033570	Msa1105020	0.853228	2.744790e-61	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1033570	MtrunA17_Chr7g0256371	86.548	617	23	4	1	559	10	624	0.0	1085
Msa1033570	MtrunA17_Chr7g0256391	80.227	617	64	3	1	559	1	617	0.0	1006
Msa1033570	MtrunA17_Chr7g0256411	79.417	617	67	5	1	559	32	646	0.0	993
Msa1033570	MtrunA17_Chr4g0026761	73.529	612	104	3	1	554	1	612	0.0	918
Msa1033570	MtrunA17_Chr8g0337081	59.091	616	190	5	1	554	1	616	0.0	720
Msa1033570	MtrunA17_Chr8g0337101	55.357	616	212	6	1	553	37	652	0.0	702
Msa1033570	MtrunA17_Chr4g0026811	71.806	454	70	3	20	415	6	459	0.0	650
Msa1033570	MtrunA17_Chr4g0073231	28.846	624	366	9	8	555	5	626	8.95e-91	291
Msa1033570	MtrunA17_Chr4g0026821	72.527	91	25	0	413	503	3	93	8.45e-42	145
Msa1033570	MtrunA17_Chr2g0305431	26.736	288	144	5	8	228	5	292	7.44e-36	136

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1033570	AT1G02205.2	51.452	620	234	6	1	553	1	620	0.0	655
Msa1033570	AT1G02205.3	51.200	625	233	6	1	553	1	625	0.0	652
Msa1033570	AT1G02205.4	50.416	601	231	6	20	553	21	621	0.0	618
Msa1033570	AT1G02190.1	50.160	624	238	10	1	553	1	622	0.0	608
Msa1033570	AT2G37700.3	50.000	616	244	7	1	553	1	615	0.0	601
Msa1033570	AT1G02190.2	49.840	624	236	11	1	553	1	618	0.0	600
Msa1033570	AT2G37700.1	49.675	616	237	8	1	553	1	606	0.0	592
Msa1033570	AT2G37700.4	49.914	579	263	7	1	553	1	578	0.0	563
Msa1033570	AT1G02205.1	52.506	419	181	4	153	553	38	456	1.94e-155	453
Msa1033570	AT2G37700.2	48.414	473	184	5	1	414	1	472	1.09e-151	444

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Find 128 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAAGATTGTTGATAA+AGG	0.411329	7_1:-68767891	Msa1033570:CDS
AACAAACTTTGTCAAAGTAG+AGG	0.588982	7_1:+68763059	None:intergenic
AACCAGGCATCCTTACAGAC+TGG	0.594883	7_1:-68768318	Msa1033570:CDS
AAGCATAGAGAACATTGTAA+AGG	0.498475	7_1:+68766252	None:intergenic
AAGCTCCCCAGAGGTTTCCA+AGG	0.587944	7_1:+68768295	None:intergenic
AAGTAAGAGAGGAGTTTCTT+AGG	0.281109	7_1:+68766784	None:intergenic
AAGTCGATAGAGAAACCAAT+TGG	0.548372	7_1:-68767854	Msa1033570:intron
AAGTTTAGGACTTCTAAATC+AGG	0.430707	7_1:-68765843	Msa1033570:intron
AATATTGCATGCTGGACCAG+TGG	0.640771	7_1:-68767605	Msa1033570:CDS
AATGGTATCTACATTTAATG+TGG	0.614475	7_1:-68766276	Msa1033570:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCATCCCAAATCCATAATA+TGG	-	chr7_1:68762941-68762960	Msa1033570:three_prime_UTR	30.0%
AGCATATACTCTTTCATATG+GGG	-	chr7_1:68763271-68763290	Msa1033570:CDS	30.0%
AGCATTCTGATCAACATAAA+AGG	+	chr7_1:68763328-68763347	None:intergenic	30.0%
GTGAAATAGAAATCCAAATC+TGG	+	chr7_1:68763357-68763376	None:intergenic	30.0%
AGGATACATGATATTTCCTA+TGG	-	chr7_1:68763614-68763633	Msa1033570:intron	30.0%
CAATAGTATAAAAACTCCAC+TGG	+	chr7_1:68763702-68763721	None:intergenic	30.0%
AAAGAGTTCATACAAGTGAT+AGG	+	chr7_1:68763801-68763820	None:intergenic	30.0%
CATATACTCTTGTCCAAATT+TGG	-	chr7_1:68764270-68764289	Msa1033570:intron	30.0%
GTATGAGAGATACTTCAAAA+TGG	+	chr7_1:68764532-68764551	None:intergenic	30.0%
GGAGCAAATAAATTAGCATA+TGG	+	chr7_1:68764746-68764765	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	68762896	68768414	68762896	ID=Msa1033570;Name=Msa1033570
chr7_1	mRNA	68762896	68768414	68762896	ID=Msa1033570-mRNA-1;Parent=Msa1033570;Name=Msa1033570-mRNA-1;_AED=0.38;_eAED=0.38;_QI=64\|0.7\|0.63\|1\|0.7\|0.63\|11\|224\|559
chr7_1	exon	68762896	68763290	68762896	ID=Msa1033570-mRNA-1:exon:16139;Parent=Msa1033570-mRNA-1
chr7_1	exon	68763398	68763571	68763398	ID=Msa1033570-mRNA-1:exon:16138;Parent=Msa1033570-mRNA-1
chr7_1	exon	68763805	68763900	68763805	ID=Msa1033570-mRNA-1:exon:16137;Parent=Msa1033570-mRNA-1
chr7_1	exon	68764672	68764872	68764672	ID=Msa1033570-mRNA-1:exon:16136;Parent=Msa1033570-mRNA-1
chr7_1	exon	68765844	68765951	68765844	ID=Msa1033570-mRNA-1:exon:16135;Parent=Msa1033570-mRNA-1
chr7_1	exon	68766156	68766334	68766156	ID=Msa1033570-mRNA-1:exon:16134;Parent=Msa1033570-mRNA-1
chr7_1	exon	68766341	68766501	68766341	ID=Msa1033570-mRNA-1:exon:16133;Parent=Msa1033570-mRNA-1
chr7_1	exon	68766751	68766880	68766751	ID=Msa1033570-mRNA-1:exon:16132;Parent=Msa1033570-mRNA-1
chr7_1	exon	68767551	68767735	68767551	ID=Msa1033570-mRNA-1:exon:16131;Parent=Msa1033570-mRNA-1
chr7_1	exon	68767855	68768069	68767855	ID=Msa1033570-mRNA-1:exon:16130;Parent=Msa1033570-mRNA-1
chr7_1	exon	68768291	68768414	68768291	ID=Msa1033570-mRNA-1:exon:16129;Parent=Msa1033570-mRNA-1
chr7_1	five_prime_UTR	68768351	68768414	68768351	ID=Msa1033570-mRNA-1:five_prime_utr;Parent=Msa1033570-mRNA-1
chr7_1	CDS	68768291	68768350	68768291	ID=Msa1033570-mRNA-1:cds;Parent=Msa1033570-mRNA-1
chr7_1	CDS	68767855	68768069	68767855	ID=Msa1033570-mRNA-1:cds;Parent=Msa1033570-mRNA-1
chr7_1	CDS	68767551	68767735	68767551	ID=Msa1033570-mRNA-1:cds;Parent=Msa1033570-mRNA-1
chr7_1	CDS	68766751	68766880	68766751	ID=Msa1033570-mRNA-1:cds;Parent=Msa1033570-mRNA-1
chr7_1	CDS	68766341	68766501	68766341	ID=Msa1033570-mRNA-1:cds;Parent=Msa1033570-mRNA-1
chr7_1	CDS	68766156	68766334	68766156	ID=Msa1033570-mRNA-1:cds;Parent=Msa1033570-mRNA-1
chr7_1	CDS	68765844	68765951	68765844	ID=Msa1033570-mRNA-1:cds;Parent=Msa1033570-mRNA-1
chr7_1	CDS	68764672	68764872	68764672	ID=Msa1033570-mRNA-1:cds;Parent=Msa1033570-mRNA-1
chr7_1	CDS	68763805	68763900	68763805	ID=Msa1033570-mRNA-1:cds;Parent=Msa1033570-mRNA-1
chr7_1	CDS	68763398	68763571	68763398	ID=Msa1033570-mRNA-1:cds;Parent=Msa1033570-mRNA-1
chr7_1	CDS	68763120	68763290	68763120	ID=Msa1033570-mRNA-1:cds;Parent=Msa1033570-mRNA-1
chr7_1	three_prime_UTR	68762896	68763119	68762896	ID=Msa1033570-mRNA-1:three_prime_utr;Parent=Msa1033570-mRNA-1

Gene Sequence

>Msa1033570

ATGGCTTCCAAACCAGGCATCCTTACAGACTGGCCTTGGAAACCTCTGGGGAGCTTCAAGTTCGTGATTCTAAGCCCGTGGATTGCTCATAGCATATACTCTTTCATATGGGGTGAAAGGGATCCAGTGTACCAAGCTATATTTCCTTTTATGTTGATCAGAATGCTACACAACCAGATTTGGATTTCTATTTCACGTTACCAAACTGCTAAAGGAAAAAGCAAGATTGTTGATAAAGGCCTTGAATTCGAACAAGTCGATAGAGAAACCAATTGGGATGATCAAATATTATTCACTGCATTACTATATTATATAGGATACATGATATTTCCTATGGCCTCTAACTTACCATGGTGGAGAACAGATGGTGTGGTTCTTACAGCAATATTGCATGCTGGACCAGTGGAGTTTTTATACTATTGGCTACATAGAGCACTTCATCATCATTATTTATACTCGCTGGCTGCACTATATGGCTATATATTTTACATTGATTTCATGAACAACATGGGTCATTGCAACTTTGAGTTCTTTCCTAAGAAACTCCTCTCTTACTTTCCCATTTTGAAGTATCTCTCATACACACCATCGGCTAATTACTCACTTTTCATGCCAATGTATGACTACATTTATGGTACAGTGCATAAATCCACAGATGCTACATATGAAGCCTCATTGATTAGACCAAAGGAGTCACCAGATGTGGTTCACTTAACACATTTAACAACACTTGATTCCATTTATCAATTACGCTTTGCTTCATTAGCTTCCAACCCTCAAACATCTAAATGGTATCTACATTTAATGTGGCCCTTTACAATGTTCTCTATGCTTATGACTTGGATTTGTGGGCGTGCCTTTGTTTTAGAAAGCAACACCTTCAATGATCTTAAGCTACAAAGTTGGATTATACCAAGATTTAAAACACAGTATTTCTCAAAAGGGCAGAGCATAACATTGAACAACTTGATTGAAGAAACAATTATGGAGGCTGAGTTAAATGGAGCAAAGGTGATAAGTTTAGGACTTCTAAATCAGAAACATCAGCTGAATGCACACTGTGAACATTATATTCAAAGGTTCCCACAATTGAAGATAAAAGTTGTAGATGGAAGTAGCCTAGCTGCTGCAACCGTGTTGAACAACATTCCTAAAGAGACAAATCAAGTGCTTCTTCGAGGCAAGTTCAATAAGGTTGCGTTTGCCATTGCTAATGCTTTATGCAGAAAAAATGTACAGGTGGCTGTATTATATAAGGATGAGCTTATAGATCTTAGACAAAGGGTCATCATGTCGAAAGAAAGCTTGGTTGTTTCACCAATCAATACTCCAAAGATATGGTTAGTTGGAGATGAATGGGATGAATATGAGCAAATGGAAGCACCGAAAGGATCATTGTTCATACCATTTTCTCATTTCCCTCCAAAGAAAATGCGAAAAGATTGCTTCTACCACTATACACCAGCAATGATTACTCCTACTACATTCATGAATTCACACTCTTGTGAGAATTGGCTTCCAAGAAGAGTAATGAGTGCATGGCGTATTGCTGGAATAATTCATGCCTTAGAAGGATGGAATGTTCATGAATGTGGTGACACTATGCTTAGCACTGAGAAAGTATGGGAAGCAAGTATTCGTCATGGTTTCCAACCTCTAAAGAATATTCTCACAAATTAA

Protein sequence

>Msa1033570

MASKPGILTDWPWKPLGSFKFVILSPWIAHSIYSFIWGERDPVYQAIFPFMLIRMLHNQIWISISRYQTAKGKSKIVDKGLEFEQVDRETNWDDQILFTALLYYIGYMIFPMASNLPWWRTDGVVLTAILHAGPVEFLYYWLHRALHHHYLYSLAALYGYIFYIDFMNNMGHCNFEFFPKKLLSYFPILKYLSYTPSANYSLFMPMYDYIYGTVHKSTDATYEASLIRPKESPDVVHLTHLTTLDSIYQLRFASLASNPQTSKWYLHLMWPFTMFSMLMTWICGRAFVLESNTFNDLKLQSWIIPRFKTQYFSKGQSITLNNLIEETIMEAELNGAKVISLGLLNQKHQLNAHCEHYIQRFPQLKIKVVDGSSLAAATVLNNIPKETNQVLLRGKFNKVAFAIANALCRKNVQVAVLYKDELIDLRQRVIMSKESLVVSPINTPKIWLVGDEWDEYEQMEAPKGSLFIPFSHFPPKKMRKDCFYHYTPAMITPTTFMNSHSCENWLPRRVMSAWRIAGIIHALEGWNVHECGDTMLSTEKVWEASIRHGFQPLKNILTN*