Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105020 | AES81238.1 | 94.241 | 191 | 9 | 1 | 1 | 191 | 427 | 615 | 1.11e-125 | 377 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105020 | sp|B8BHF1|GLO15_ORYSI | 55.615 | 187 | 81 | 2 | 1 | 185 | 432 | 618 | 7.32e-67 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105020 | G7KRL9 | 94.241 | 191 | 9 | 1 | 1 | 191 | 427 | 615 | 5.30e-126 | 377 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1033570 | Msa1105020 | 0.853228 | 2.744790e-61 | -8.615850e-47 |
| Msa1073330 | Msa1105020 | 0.841138 | 5.699443e-58 | -8.615850e-47 |
| Msa1105020 | Msa1160420 | 0.833875 | 4.147942e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105020 | MtrunA17_Chr7g0256371 | 94.241 | 191 | 9 | 1 | 1 | 191 | 436 | 624 | 1.46e-129 | 377 |
| Msa1105020 | MtrunA17_Chr7g0256391 | 89.005 | 191 | 21 | 0 | 1 | 191 | 427 | 617 | 9.36e-124 | 362 |
| Msa1105020 | MtrunA17_Chr7g0256411 | 83.770 | 191 | 29 | 2 | 1 | 191 | 458 | 646 | 3.50e-112 | 333 |
| Msa1105020 | MtrunA17_Chr4g0026761 | 76.344 | 186 | 44 | 0 | 1 | 186 | 427 | 612 | 6.30e-102 | 306 |
| Msa1105020 | MtrunA17_Chr8g0337081 | 62.032 | 187 | 70 | 1 | 1 | 186 | 430 | 616 | 3.70e-81 | 252 |
| Msa1105020 | MtrunA17_Chr8g0337101 | 58.065 | 186 | 77 | 1 | 1 | 185 | 467 | 652 | 3.22e-75 | 238 |
| Msa1105020 | MtrunA17_Chr4g0026821 | 72.222 | 90 | 25 | 0 | 46 | 135 | 4 | 93 | 1.19e-44 | 143 |
| Msa1105020 | MtrunA17_Chr2g0305451 | 31.795 | 195 | 125 | 3 | 1 | 187 | 25 | 219 | 8.89e-26 | 99.0 |
| Msa1105020 | MtrunA17_Chr4g0073231 | 32.308 | 195 | 124 | 3 | 1 | 187 | 432 | 626 | 4.71e-25 | 101 |
| Msa1105020 | MtrunA17_Chr4g0026831 | 84.091 | 44 | 7 | 0 | 143 | 186 | 1 | 44 | 1.03e-20 | 80.9 |
| Msa1105020 | MtrunA17_Chr4g0026811 | 78.261 | 46 | 10 | 0 | 1 | 46 | 413 | 458 | 9.45e-16 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105020 | AT1G02205.5 | 50.785 | 191 | 88 | 3 | 1 | 185 | 191 | 381 | 2.55e-65 | 206 |
| Msa1105020 | AT1G02205.1 | 50.785 | 191 | 88 | 3 | 1 | 185 | 266 | 456 | 2.76e-64 | 205 |
| Msa1105020 | AT1G02190.1 | 52.632 | 190 | 83 | 3 | 1 | 185 | 435 | 622 | 1.32e-63 | 207 |
| Msa1105020 | AT1G02190.2 | 52.632 | 190 | 83 | 3 | 1 | 185 | 431 | 618 | 1.59e-63 | 207 |
| Msa1105020 | AT1G02205.4 | 50.785 | 191 | 88 | 3 | 1 | 185 | 431 | 621 | 2.36e-62 | 204 |
| Msa1105020 | AT1G02205.2 | 50.785 | 191 | 88 | 3 | 1 | 185 | 430 | 620 | 3.80e-62 | 203 |
| Msa1105020 | AT1G02205.3 | 49.490 | 196 | 88 | 2 | 1 | 185 | 430 | 625 | 1.00e-61 | 202 |
| Msa1105020 | AT2G37700.4 | 52.381 | 189 | 86 | 2 | 1 | 185 | 390 | 578 | 8.45e-61 | 199 |
| Msa1105020 | AT2G37700.3 | 52.381 | 189 | 86 | 2 | 1 | 185 | 427 | 615 | 1.86e-60 | 199 |
| Msa1105020 | AT2G37700.1 | 51.323 | 189 | 79 | 3 | 1 | 185 | 427 | 606 | 7.46e-57 | 189 |
| Msa1105020 | AT5G57800.1 | 33.166 | 199 | 124 | 4 | 1 | 191 | 435 | 632 | 7.93e-23 | 95.5 |
Find 46 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTAGCACCGAGAAAGTA+TGG | 0.268407 | 7_3:+43143859 | Msa1105020:CDS |
| CATGCACTCATTACTCTTCT+TGG | 0.283707 | 7_3:-43143774 | None:intergenic |
| GTAGTAATTTCAACACATTT+TGG | 0.294781 | 7_3:-43144069 | None:intergenic |
| TTTGGAGGGAAATGAGAAAA+TGG | 0.296760 | 7_3:-43143557 | None:intergenic |
| TAGAGGAAGTATATCGATAA+TGG | 0.303413 | 7_3:-43143957 | None:intergenic |
| ATGAACATTCCATCCTTCTA+AGG | 0.317589 | 7_3:-43143820 | None:intergenic |
| AGCACTTGATTTGTCTCTTT+AGG | 0.336516 | 7_3:-43142270 | None:intergenic |
| ACTTGCTTCCCATACTTTCT+CGG | 0.360626 | 7_3:-43143868 | None:intergenic |
| GCAGGTGGCTGTATTATATA+AGG | 0.367330 | 7_3:+43143156 | Msa1105020:intron |
| TTTGTGAGAATATTCTTTAG+AGG | 0.382170 | 7_3:-43143909 | None:intergenic |
| GGAATAATTCATGCCTTAGA+AGG | 0.384364 | 7_3:+43143807 | Msa1105020:CDS |
| TCTTCGAGGCAAGTTCAATA+AGG | 0.388690 | 7_3:+43142293 | Msa1105020:CDS |
| TGAGAATATTCTTTAGAGGT+TGG | 0.401910 | 7_3:-43143905 | None:intergenic |
| TGGGAAGCAAGTATTCTTCA+TGG | 0.404509 | 7_3:+43143879 | Msa1105020:CDS |
| TGTGAATTCATGAATGTAGT+AGG | 0.418846 | 7_3:-43143629 | None:intergenic |
| ATGAGTGCATGGCGTATTGC+TGG | 0.430094 | 7_3:+43143786 | Msa1105020:CDS |
| AATTAACCAAGTGTGACAAA+TGG | 0.438907 | 7_3:+43143930 | Msa1105020:exon |
| AGAGGAAGTATATCGATAAT+GGG | 0.448082 | 7_3:-43143956 | None:intergenic |
| TATGGTTAGTTGGAGATGAA+TGG | 0.456856 | 7_3:+43143489 | Msa1105020:CDS |
| CCAACCTTTGGAGTATTGAT+TGG | 0.465706 | 7_3:-43143238 | None:intergenic |
| GTAGTAGGAGTAATCATTGC+TGG | 0.470094 | 7_3:-43143614 | None:intergenic |
| ATTAACCAAGTGTGACAAAT+GGG | 0.477221 | 7_3:+43143931 | Msa1105020:exon |
| ATCTAAAAGATATGGTTAGT+TGG | 0.480880 | 7_3:+43143479 | Msa1105020:intron |
| ATGGGATGAATATGAGCAAA+TGG | 0.495092 | 7_3:+43143508 | Msa1105020:CDS |
| GGGAACCCATTTGTCACACT+TGG | 0.495754 | 7_3:-43143936 | None:intergenic |
| ATGGTTAGTTGGAGATGAAT+GGG | 0.501106 | 7_3:+43143490 | Msa1105020:CDS |
| GGTATGAACAATGATCCTTT+CGG | 0.516935 | 7_3:-43143536 | None:intergenic |
| ACAAATCAAGTGCTTCTTCG+AGG | 0.524077 | 7_3:+43142279 | Msa1105020:CDS |
| GAAATTGAAACATGGATACA+TGG | 0.528938 | 7_3:-43144047 | None:intergenic |
| GCTTATAGATCTTAGACAAA+GGG | 0.537060 | 7_3:+43143183 | Msa1105020:CDS |
| AGCTTATAGATCTTAGACAA+AGG | 0.539004 | 7_3:+43143182 | Msa1105020:CDS |
| TAATCATTGCTGGTGTATAG+TGG | 0.543081 | 7_3:-43143604 | None:intergenic |
| CATCATGTCGAAAGAAAGCT+TGG | 0.558066 | 7_3:+43143207 | Msa1105020:CDS |
| TAATTCATGCCTTAGAAGGA+TGG | 0.560259 | 7_3:+43143811 | Msa1105020:CDS |
| TTCACCAATCAATACTCCAA+AGG | 0.582765 | 7_3:+43143234 | Msa1105020:CDS |
| TCTGCATAAAGCATTAGCAA+TGG | 0.584639 | 7_3:-43142325 | None:intergenic |
| CATGAATTCACACTCTTGTG+AGG | 0.587054 | 7_3:+43143640 | Msa1105020:CDS |
| GTTTGTTATGCATTAATACA+CGG | 0.587856 | 7_3:+43143990 | Msa1105020:three_prime_UTR |
| AACAAACTTTGTCAAAGTAG+AGG | 0.588982 | 7_3:-43143974 | None:intergenic |
| GCTTAGCACCGAGAAAGTAT+GGG | 0.590984 | 7_3:+43143860 | Msa1105020:CDS |
| CAAGAAGAGTAATGAGTGCA+TGG | 0.592300 | 7_3:+43143775 | Msa1105020:CDS |
| TCAACACAATGGCAGCAGCT+AGG | 0.603714 | 7_3:-43142239 | None:intergenic |
| GGATGGAATGTTCATGAATG+TGG | 0.610974 | 7_3:+43143828 | Msa1105020:CDS |
| AGGAATGTTGTTCAACACAA+TGG | 0.623600 | 7_3:-43142250 | None:intergenic |
| GAGCAAATGGAAGCACCGAA+AGG | 0.641337 | 7_3:+43143521 | Msa1105020:CDS |
| TCATTGCTGGTGTATAGTGG+TGG | 0.652055 | 7_3:-43143601 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | + | chr7_3:43142084-43142103 | Msa1105020:intron | 0.0% |
| !!! | ATTTATTTTGTTTAATCTAA+TGG | - | chr7_3:43142006-43142025 | None:intergenic | 10.0% |
| !! | ATATAAAATGAAATATATAG+TGG | - | chr7_3:43142468-43142487 | None:intergenic | 10.0% |
| !! | AAATTAATTAATTAACCATT+TGG | + | chr7_3:43142649-43142668 | Msa1105020:intron | 10.0% |
| !! | AATTAATTAATTAACCATTT+GGG | + | chr7_3:43142650-43142669 | Msa1105020:intron | 10.0% |
| !!! | AAACATACAATTTTTTTTTA+AGG | + | chr7_3:43142890-43142909 | Msa1105020:intron | 10.0% |
| !! | TATATATATATATATGAGTC+AGG | - | chr7_3:43142078-43142097 | None:intergenic | 15.0% |
| !! | TAAATAAACATTAGTTACTA+CGG | + | chr7_3:43142506-43142525 | Msa1105020:intron | 15.0% |
| !! | ATTAATTAATTAACCATTTG+GGG | + | chr7_3:43142651-43142670 | Msa1105020:intron | 15.0% |
| !! | CATTAAATATGAATACTTAA+GGG | - | chr7_3:43142819-43142838 | None:intergenic | 15.0% |
| !! | ACATTAAATATGAATACTTA+AGG | - | chr7_3:43142820-43142839 | None:intergenic | 15.0% |
| !!! | AATTTTTAGATTAGAAACTA+GGG | - | chr7_3:43144026-43144045 | None:intergenic | 15.0% |
| !!! | AAATTTTTAGATTAGAAACT+AGG | - | chr7_3:43144027-43144046 | None:intergenic | 15.0% |
| !!! | GTTAATTTTATTTTGTAAGA+AGG | + | chr7_3:43144104-43144123 | Msa1105020:three_prime_UTR | 15.0% |
| !!! | TGATTTTGAATTTTAGCATA+TGG | + | chr7_3:43141778-43141797 | Msa1105020:intron | 20.0% |
| !!! | TCTACTCAATTTAGTTTAAA+GGG | - | chr7_3:43141826-43141845 | None:intergenic | 20.0% |
| !!! | TTCTACTCAATTTAGTTTAA+AGG | - | chr7_3:43141827-43141846 | None:intergenic | 20.0% |
| !! | AAAAGTGATTTCATCTAATT+TGG | + | chr7_3:43141845-43141864 | Msa1105020:intron | 20.0% |
| !! | CAAAATAAATGATTGAGATT+TGG | + | chr7_3:43142016-43142035 | Msa1105020:intron | 20.0% |
| !!! | TTTGATTTGAATAACATTGA+TGG | + | chr7_3:43142130-43142149 | Msa1105020:intron | 20.0% |
| !!! | TTGATTTGAATAACATTGAT+GGG | + | chr7_3:43142131-43142150 | Msa1105020:intron | 20.0% |
| !! | TTAAAAAGTCAGTAATAAGA+AGG | - | chr7_3:43142763-43142782 | None:intergenic | 20.0% |
| !! | ACAAATTAATTATGAGTGAT+TGG | + | chr7_3:43142921-43142940 | Msa1105020:intron | 20.0% |
| !! | TTTATCTCATCTAAAAGATA+TGG | + | chr7_3:43143471-43143490 | Msa1105020:intron | 20.0% |
| !! | ATGTATTTATGTAACAGAAT+TGG | + | chr7_3:43143748-43143767 | Msa1105020:intron | 20.0% |
| !!! | ATGAGTTTTTTACTACTGAA+GGG | + | chr7_3:43141705-43141724 | Msa1105020:intron | 25.0% |
| ! | AAACGTGATTTCATCTAATT+TGG | + | chr7_3:43141881-43141900 | Msa1105020:intron | 25.0% |
| ! | TGGAATTCGAAGTAAAATAA+TGG | + | chr7_3:43142106-43142125 | Msa1105020:intron | 25.0% |
| ! | ACTGTGAACATTATATTCAA+AGG | + | chr7_3:43142178-43142197 | Msa1105020:intron | 25.0% |
| !! | CAACTTTTATGTTCAATTGT+GGG | - | chr7_3:43142206-43142225 | None:intergenic | 25.0% |
| !! | ACAACTTTTATGTTCAATTG+TGG | - | chr7_3:43142207-43142226 | None:intergenic | 25.0% |
| ! | TTGAACATAAAAGTTGTAGA+TGG | + | chr7_3:43142210-43142229 | Msa1105020:intron | 25.0% |
| ! | TTTATGCAGAAAAAATGTAC+AGG | + | chr7_3:43142338-43142357 | Msa1105020:CDS | 25.0% |
| ! | TCACTGTCTCATAATAAATA+TGG | - | chr7_3:43142596-43142615 | None:intergenic | 25.0% |
| ! | AATATGATTAACTCAAGTAG+AGG | + | chr7_3:43142852-43142871 | Msa1105020:intron | 25.0% |
| !! | ATATATTTCGAGTCGATATT+TGG | - | chr7_3:43142992-43143011 | None:intergenic | 25.0% |
| !! | AATTTGCTCTCTGAAAAAAT+TGG | - | chr7_3:43143040-43143059 | None:intergenic | 25.0% |
| !!! | TTTTTTGATAAATTGCAAGC+AGG | + | chr7_3:43143138-43143157 | Msa1105020:intron | 25.0% |
| ! | AAAAAACCGTCAAAGTTATA+TGG | + | chr7_3:43143279-43143298 | Msa1105020:intron | 25.0% |
| ! | CTAAATCCATATAACTTTGA+CGG | - | chr7_3:43143288-43143307 | None:intergenic | 25.0% |
| ! | GATTCCATAAAATTATCAAG+AGG | - | chr7_3:43143380-43143399 | None:intergenic | 25.0% |
| !!! | AGACATTGATTCATCATTTA+AGG | - | chr7_3:43143402-43143421 | None:intergenic | 25.0% |
| ! | TATTATGAGTCTAACATAAC+AGG | + | chr7_3:43143440-43143459 | Msa1105020:intron | 25.0% |
| ! | ATCTAAAAGATATGGTTAGT+TGG | + | chr7_3:43143479-43143498 | Msa1105020:intron | 25.0% |
| ! | TATAATAGGTACTATACTGA+AGG | - | chr7_3:43143690-43143709 | None:intergenic | 25.0% |
| ! | TTTGTGAGAATATTCTTTAG+AGG | - | chr7_3:43143912-43143931 | None:intergenic | 25.0% |
| !!! | GTTTGTTATGCATTAATACA+CGG | + | chr7_3:43143990-43144009 | Msa1105020:three_prime_UTR | 25.0% |
| !!! | ACATTTTGGAAATTGAAACA+TGG | - | chr7_3:43144058-43144077 | None:intergenic | 25.0% |
| !! | GTAGTAATTTCAACACATTT+TGG | - | chr7_3:43144072-43144091 | None:intergenic | 25.0% |
| TGAGAAGAAACATCATTTCA+AGG | + | chr7_3:43141751-43141770 | Msa1105020:intron | 30.0% | |
| !! | TCTAATTTGGTTTGTGTTGA+TGG | + | chr7_3:43141894-43141913 | Msa1105020:intron | 30.0% |
| ! | ATTAATTAACCATTTGGGGT+TGG | + | chr7_3:43142655-43142674 | Msa1105020:intron | 30.0% |
| ! | TTAATTAACCATTTGGGGTT+GGG | + | chr7_3:43142656-43142675 | Msa1105020:intron | 30.0% |
| !!! | TATTACACGTGATTTTTTGC+AGG | + | chr7_3:43143009-43143028 | Msa1105020:intron | 30.0% |
| AGCTTATAGATCTTAGACAA+AGG | + | chr7_3:43143182-43143201 | Msa1105020:CDS | 30.0% | |
| GCTTATAGATCTTAGACAAA+GGG | + | chr7_3:43143183-43143202 | Msa1105020:CDS | 30.0% | |
| TAAAATTATCAAGAGGTGGA+TGG | - | chr7_3:43143373-43143392 | None:intergenic | 30.0% | |
| !! | TCCACCTCTTGATAATTTTA+TGG | + | chr7_3:43143373-43143392 | Msa1105020:intron | 30.0% |
| TCCATAAAATTATCAAGAGG+TGG | - | chr7_3:43143377-43143396 | None:intergenic | 30.0% | |
| ! | CAATCTTTTCGCATTTTCTT+TGG | - | chr7_3:43143578-43143597 | None:intergenic | 30.0% |
| TGTGAATTCATGAATGTAGT+AGG | - | chr7_3:43143632-43143651 | None:intergenic | 30.0% | |
| ! | TGAGAATATTCTTTAGAGGT+TGG | - | chr7_3:43143908-43143927 | None:intergenic | 30.0% |
| AATTAACCAAGTGTGACAAA+TGG | + | chr7_3:43143930-43143949 | Msa1105020:exon | 30.0% | |
| ATTAACCAAGTGTGACAAAT+GGG | + | chr7_3:43143931-43143950 | Msa1105020:exon | 30.0% | |
| ! | AGAGGAAGTATATCGATAAT+GGG | - | chr7_3:43143959-43143978 | None:intergenic | 30.0% |
| ! | TAGAGGAAGTATATCGATAA+TGG | - | chr7_3:43143960-43143979 | None:intergenic | 30.0% |
| AACAAACTTTGTCAAAGTAG+AGG | - | chr7_3:43143977-43143996 | None:intergenic | 30.0% | |
| GAAATTGAAACATGGATACA+TGG | - | chr7_3:43144050-43144069 | None:intergenic | 30.0% | |
| AGGAATGTTGTTCAACACAA+TGG | - | chr7_3:43142253-43142272 | None:intergenic | 35.0% | |
| !! | AGCACTTGATTTGTCTCTTT+AGG | - | chr7_3:43142273-43142292 | None:intergenic | 35.0% |
| ! | TCTGCATAAAGCATTAGCAA+TGG | - | chr7_3:43142328-43142347 | None:intergenic | 35.0% |
| ! | ATTTTGTTGACGCAATGCAT+AGG | - | chr7_3:43142411-43142430 | None:intergenic | 35.0% |
| ACAAGCTGAGATTCAAACTT+TGG | - | chr7_3:43142719-43142738 | None:intergenic | 35.0% | |
| GTCAGTAATAAGAAGGTTGA+TGG | - | chr7_3:43142756-43142775 | None:intergenic | 35.0% | |
| TTTGATAAATTGCAAGCAGG+TGG | + | chr7_3:43143141-43143160 | Msa1105020:intron | 35.0% | |
| TTCACCAATCAATACTCCAA+AGG | + | chr7_3:43143234-43143253 | Msa1105020:CDS | 35.0% | |
| AAAGAAAATGGACCAACCTT+TGG | - | chr7_3:43143253-43143272 | None:intergenic | 35.0% | |
| ! | TATGGTTAGTTGGAGATGAA+TGG | + | chr7_3:43143489-43143508 | Msa1105020:CDS | 35.0% |
| ! | ATGGTTAGTTGGAGATGAAT+GGG | + | chr7_3:43143490-43143509 | Msa1105020:CDS | 35.0% |
| ATGGGATGAATATGAGCAAA+TGG | + | chr7_3:43143508-43143527 | Msa1105020:CDS | 35.0% | |
| GGTATGAACAATGATCCTTT+CGG | - | chr7_3:43143539-43143558 | None:intergenic | 35.0% | |
| TTTGGAGGGAAATGAGAAAA+TGG | - | chr7_3:43143560-43143579 | None:intergenic | 35.0% | |
| ! | CTTTTCGCATTTTCTTTGGA+GGG | - | chr7_3:43143574-43143593 | None:intergenic | 35.0% |
| ! | TCTTTTCGCATTTTCTTTGG+AGG | - | chr7_3:43143575-43143594 | None:intergenic | 35.0% |
| TAATCATTGCTGGTGTATAG+TGG | - | chr7_3:43143607-43143626 | None:intergenic | 35.0% | |
| GGAATAATTCATGCCTTAGA+AGG | + | chr7_3:43143807-43143826 | Msa1105020:CDS | 35.0% | |
| TAATTCATGCCTTAGAAGGA+TGG | + | chr7_3:43143811-43143830 | Msa1105020:CDS | 35.0% | |
| ATGAACATTCCATCCTTCTA+AGG | - | chr7_3:43143823-43143842 | None:intergenic | 35.0% | |
| AGTAGCAATCAGATGAGTTG+CGG | + | chr7_3:43141936-43141955 | Msa1105020:intron | 40.0% | |
| ACAAATCAAGTGCTTCTTCG+AGG | + | chr7_3:43142279-43142298 | Msa1105020:CDS | 40.0% | |
| TCTTCGAGGCAAGTTCAATA+AGG | + | chr7_3:43142293-43142312 | Msa1105020:CDS | 40.0% | |
| !! | GGGATACAACGTTGATTTGA+CGG | - | chr7_3:43142799-43142818 | None:intergenic | 40.0% |
| GCAGGTGGCTGTATTATATA+AGG | + | chr7_3:43143156-43143175 | Msa1105020:intron | 40.0% | |
| CATCATGTCGAAAGAAAGCT+TGG | + | chr7_3:43143207-43143226 | Msa1105020:CDS | 40.0% | |
| !! | CCAACCTTTGGAGTATTGAT+TGG | - | chr7_3:43143241-43143260 | None:intergenic | 40.0% |
| CCAATCAATACTCCAAAGGT+TGG | + | chr7_3:43143238-43143257 | Msa1105020:intron | 40.0% | |
| TGGATGGTGTGTTTAATGGT+GGG | - | chr7_3:43143357-43143376 | None:intergenic | 40.0% | |
| GTAGTAGGAGTAATCATTGC+TGG | - | chr7_3:43143617-43143636 | None:intergenic | 40.0% | |
| CATGAATTCACACTCTTGTG+AGG | + | chr7_3:43143640-43143659 | Msa1105020:CDS | 40.0% | |
| CATGCACTCATTACTCTTCT+TGG | - | chr7_3:43143777-43143796 | None:intergenic | 40.0% | |
| CAAGAAGAGTAATGAGTGCA+TGG | + | chr7_3:43143775-43143794 | Msa1105020:CDS | 40.0% | |
| GGATGGAATGTTCATGAATG+TGG | + | chr7_3:43143828-43143847 | Msa1105020:CDS | 40.0% | |
| ACTTGCTTCCCATACTTTCT+CGG | - | chr7_3:43143871-43143890 | None:intergenic | 40.0% | |
| TGGGAAGCAAGTATTCTTCA+TGG | + | chr7_3:43143879-43143898 | Msa1105020:CDS | 40.0% | |
| !! | TGGTTTGTGTTGATGGCAGA+TGG | + | chr7_3:43141901-43141920 | Msa1105020:intron | 45.0% |
| GTAGCAATCAGATGAGTTGC+GGG | + | chr7_3:43141937-43141956 | Msa1105020:intron | 45.0% | |
| !! | CGTTGATTTGACGGCTAGAA+TGG | - | chr7_3:43142790-43142809 | None:intergenic | 45.0% |
| GGATGGTGTGTTTAATGGTG+GGG | - | chr7_3:43143356-43143375 | None:intergenic | 45.0% | |
| GTGGATGGTGTGTTTAATGG+TGG | - | chr7_3:43143358-43143377 | None:intergenic | 45.0% | |
| GAGGTGGATGGTGTGTTTAA+TGG | - | chr7_3:43143361-43143380 | None:intergenic | 45.0% | |
| TCATTGCTGGTGTATAGTGG+TGG | - | chr7_3:43143604-43143623 | None:intergenic | 45.0% | |
| ! | TGCTTAGCACCGAGAAAGTA+TGG | + | chr7_3:43143859-43143878 | Msa1105020:CDS | 45.0% |
| ! | GCTTAGCACCGAGAAAGTAT+GGG | + | chr7_3:43143860-43143879 | Msa1105020:CDS | 45.0% |
| !!! | TTTTTTAAAATAAAAGAAAA+TGG | - | chr7_3:43143265-43143284 | None:intergenic | 5.0% |
| !!! | ATTTTAATTTATGTTATAAT+AGG | - | chr7_3:43143704-43143723 | None:intergenic | 5.0% |
| TCAACGAATCCGTTGACACC+TGG | + | chr7_3:43142041-43142060 | Msa1105020:intron | 50.0% | |
| TCAACACAATGGCAGCAGCT+AGG | - | chr7_3:43142242-43142261 | None:intergenic | 50.0% | |
| CCATGAAACCCAACCCCAAA+TGG | - | chr7_3:43142667-43142686 | None:intergenic | 50.0% | |
| ! | CCATTTGGGGTTGGGTTTCA+TGG | + | chr7_3:43142664-43142683 | Msa1105020:intron | 50.0% |
| !! | GAGCAAATGGAAGCACCGAA+AGG | + | chr7_3:43143521-43143540 | Msa1105020:CDS | 50.0% |
| ATGAGTGCATGGCGTATTGC+TGG | + | chr7_3:43143786-43143805 | Msa1105020:CDS | 50.0% | |
| GGGAACCCATTTGTCACACT+TGG | - | chr7_3:43143939-43143958 | None:intergenic | 50.0% | |
| CCGTTGACACCAGGTGTCAA+CGG | - | chr7_3:43142053-43142072 | None:intergenic | 55.0% | |
| ! | CCGTTGACACCTGGTGTCAA+CGG | + | chr7_3:43142050-43142069 | Msa1105020:intron | 55.0% |
| AGTCAGGATCCGTTGACACC+AGG | - | chr7_3:43142062-43142081 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 43141705 | 43144160 | 43141705 | ID=Msa1105020;Name=Msa1105020 |
| chr7_3 | mRNA | 43141705 | 43144160 | 43141705 | ID=Msa1105020-mRNA-1;Parent=Msa1105020;Name=Msa1105020-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.25|0.2|0.4|0.75|0.6|5|225|191 |
| chr7_3 | exon | 43141705 | 43141708 | 43141705 | ID=Msa1105020-mRNA-1:exon:8812;Parent=Msa1105020-mRNA-1 |
| chr7_3 | exon | 43142229 | 43142359 | 43142229 | ID=Msa1105020-mRNA-1:exon:8813;Parent=Msa1105020-mRNA-1 |
| chr7_3 | exon | 43143160 | 43143255 | 43143160 | ID=Msa1105020-mRNA-1:exon:8814;Parent=Msa1105020-mRNA-1 |
| chr7_3 | exon | 43143488 | 43143661 | 43143488 | ID=Msa1105020-mRNA-1:exon:8815;Parent=Msa1105020-mRNA-1 |
| chr7_3 | exon | 43143765 | 43144160 | 43143765 | ID=Msa1105020-mRNA-1:exon:8816;Parent=Msa1105020-mRNA-1 |
| chr7_3 | CDS | 43141705 | 43141708 | 43141705 | ID=Msa1105020-mRNA-1:cds;Parent=Msa1105020-mRNA-1 |
| chr7_3 | CDS | 43142229 | 43142359 | 43142229 | ID=Msa1105020-mRNA-1:cds;Parent=Msa1105020-mRNA-1 |
| chr7_3 | CDS | 43143160 | 43143255 | 43143160 | ID=Msa1105020-mRNA-1:cds;Parent=Msa1105020-mRNA-1 |
| chr7_3 | CDS | 43143488 | 43143661 | 43143488 | ID=Msa1105020-mRNA-1:cds;Parent=Msa1105020-mRNA-1 |
| chr7_3 | CDS | 43143765 | 43143935 | 43143765 | ID=Msa1105020-mRNA-1:cds;Parent=Msa1105020-mRNA-1 |
| chr7_3 | three_prime_UTR | 43143936 | 43144160 | 43143936 | ID=Msa1105020-mRNA-1:three_prime_utr;Parent=Msa1105020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
