AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1074090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1074090 MtrunA17_Chr7g0257181 100.000 68 0 0 38 105 1 68 1.74e-44 138
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1074090 AT2G43780.4 66.197 71 23 1 35 105 24 93 4.13e-26 93.2
Msa1074090 AT2G43780.3 68.657 67 20 1 38 104 1 66 9.19e-26 91.7
Msa1074090 AT2G43780.1 68.657 67 20 1 38 104 1 66 9.19e-26 91.7
Msa1074090 AT2G43780.2 68.657 67 20 1 38 104 1 66 9.19e-26 91.7

Find 48 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTAATACTCCAGCCATTT+TGG 0.197201 7_2:-71812141 None:intergenic
CGAGGTGGACGCGGCGGTCT+TGG 0.201704 7_2:-71810593 None:intergenic
TTCTTTATAGTTTACCAAAA+TGG 0.227595 7_2:+71812127 Msa1074090:intron
AATGCTTGATTCGCCTTCTT+TGG 0.262054 7_2:-71812315 None:intergenic
GTCGCTTTCTCTTTCTCTTC+TGG 0.274508 7_2:+71810618 Msa1074090:CDS
CCTTGTATTTAATAAAGTTT+AGG 0.300367 7_2:+71812465 Msa1074090:three_prime_UTR
ACTATGAAATTCTTTGTCTT+AGG 0.312137 7_2:-71812179 None:intergenic
ACCAAAATGGCTGGAGTATT+AGG 0.318096 7_2:+71812140 Msa1074090:CDS
GCCTTCTTTGGTGCTCTTGT+CGG 0.348229 7_2:-71812303 None:intergenic
AACGGTTATTATGTTTCAAT+TGG 0.349565 7_2:-71812525 None:intergenic
GAGGTGGACGCGGCGGTCTT+GGG 0.355664 7_2:-71810592 None:intergenic
TTTGGTTGTACGCAATGTTT+TGG 0.369171 7_2:+71812384 Msa1074090:three_prime_UTR
ACAAAGAATTTCATAGTTGC+CGG 0.374694 7_2:+71812185 Msa1074090:CDS
ACTAAGCTCTAGGCCTTTGA+TGG 0.419130 7_2:-71812338 None:intergenic
CCTAAACTTTATTAAATACA+AGG 0.423444 7_2:-71812465 None:intergenic
AATAACATGAACAGTACTTA+AGG 0.452950 7_2:-71812500 None:intergenic
TTATAGTTTACCAAAATGGC+TGG 0.453643 7_2:+71812131 Msa1074090:intron
TACTTTAACTATTTCCATGC+TGG 0.453656 7_2:-71812432 None:intergenic
ACAGTACACAAATAATACTT+TGG 0.456449 7_2:+71812366 Msa1074090:three_prime_UTR
ACGTGAGACTCAATATCTCT+TGG 0.468646 7_2:+71812562 Msa1074090:three_prime_UTR
AAGCGACGGCGAGGTGGACG+CGG 0.486196 7_2:-71810602 None:intergenic
CAAAGAATTTCATAGTTGCC+GGG 0.488180 7_2:+71812186 Msa1074090:CDS
AATTCTTTGTCTTAGGCGCC+AGG 0.505757 7_2:-71812172 None:intergenic
AGTACCTCCAACTGCTCTCA+TGG 0.506868 7_2:-71812246 None:intergenic
GCTGGAGTATTAGGATATAG+TGG 0.507617 7_2:+71812149 Msa1074090:CDS
CGAATCAAGCATTCCATCAA+AGG 0.507874 7_2:+71812325 Msa1074090:CDS
GCCGACAAGAGCACCAAAGA+AGG 0.517286 7_2:+71812302 Msa1074090:CDS
TTCTACACCATGAGAGCAGT+TGG 0.517929 7_2:+71812239 Msa1074090:CDS
AATTGAAACATAATAACCGT+TGG 0.524572 7_2:+71812527 Msa1074090:three_prime_UTR
TGGAGGTACTGATGAACTAC+AGG 0.526085 7_2:+71812259 Msa1074090:CDS
TTAACTATTTCCATGCTGGA+AGG 0.544751 7_2:-71812428 None:intergenic
TCACTAAAACGCCGCCGTAG+AGG 0.561288 7_2:+71810568 Msa1074090:CDS
GTAATATGTAAGACGATGAA+AGG 0.564304 7_2:-71812647 None:intergenic
ACTGTAAGCAACTAAGCTCT+AGG 0.568639 7_2:-71812348 None:intergenic
CGGCGGTCTTGGGTCCTCTA+CGG 0.574685 7_2:-71810582 None:intergenic
GACAAAAGTTGTCAAACCCC+CGG 0.577777 7_2:-71812204 None:intergenic
TAACTATTTCCATGCTGGAA+GGG 0.584018 7_2:-71812427 None:intergenic
AAGAGAAAGCGACGGCGAGG+TGG 0.591651 7_2:-71810608 None:intergenic
AGAAGAGAAAGAGAAAGCGA+CGG 0.598553 7_2:-71810616 None:intergenic
AGAAAGAGAAAGCGACGGCG+AGG 0.608606 7_2:-71810611 None:intergenic
TACACCATGAGAGCAGTTGG+AGG 0.610981 7_2:+71812242 Msa1074090:CDS
AGTATTAGGATATAGTGGCC+TGG 0.611243 7_2:+71812154 Msa1074090:CDS
AAAGAATTTCATAGTTGCCG+GGG 0.615205 7_2:+71812187 Msa1074090:CDS
ACGTGAAATACTTAATCCAA+CGG 0.624324 7_2:-71812543 None:intergenic
CGACGGCGAGGTGGACGCGG+CGG 0.634918 7_2:-71810599 None:intergenic
AAGAATTTCATAGTTGCCGG+GGG 0.655049 7_2:+71812188 Msa1074090:CDS
AAAATGAAGTGCGACAAATG+GGG 0.685319 7_2:-71812623 None:intergenic
CGGTCTTGGGTCCTCTACGG+CGG 0.699173 7_2:-71810579 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTGAAAGAAAAAAAAATA+GGG - chr7_2:71810844-71810863 None:intergenic 10.0%
!! AATTTGAAAGAAAAAAAAAT+AGG - chr7_2:71810845-71810864 None:intergenic 10.0%
!!! TTTTTTTTTCTTTCAAATTT+CGG + chr7_2:71810846-71810865 Msa1074090:intron 10.0%
!! ATTTGAAAGAAAAAAAAATA+GGG - chr7_2:71810844-71810863 None:intergenic 10.0%
!! AATTTGAAAGAAAAAAAAAT+AGG - chr7_2:71810845-71810864 None:intergenic 10.0%
!!! TTTTTTTTTCTTTCAAATTT+CGG + chr7_2:71810846-71810865 Msa1074090:intron 10.0%
!!! TTCTACAATTTCTAAAAAAA+GGG - chr7_2:71811845-71811864 None:intergenic 15.0%
!!! TTTCTACAATTTCTAAAAAA+AGG - chr7_2:71811846-71811865 None:intergenic 15.0%
!! TAGATTGTGTTAAAAAAAAT+TGG + chr7_2:71812722-71812741 Msa1074090:three_prime_UTR 15.0%
!! AGATTGTGTTAAAAAAAATT+GGG + chr7_2:71812723-71812742 Msa1074090:three_prime_UTR 15.0%
!!! TTCTACAATTTCTAAAAAAA+GGG - chr7_2:71811845-71811864 None:intergenic 15.0%
!!! TTTCTACAATTTCTAAAAAA+AGG - chr7_2:71811846-71811865 None:intergenic 15.0%
!! TAGATTGTGTTAAAAAAAAT+TGG + chr7_2:71812722-71812741 Msa1074090:three_prime_UTR 15.0%
!! AGATTGTGTTAAAAAAAATT+GGG + chr7_2:71812723-71812742 Msa1074090:three_prime_UTR 15.0%
!! TTTGCTAATATTCCAATTTA+AGG + chr7_2:71811004-71811023 Msa1074090:intron 20.0%
!! AAGCTTAAAAGATTTCAAAA+TGG - chr7_2:71811228-71811247 None:intergenic 20.0%
!! TGTAAATCATAAAAGTTGTT+AGG + chr7_2:71811315-71811334 Msa1074090:intron 20.0%
!! AACTTAGTTTAAAAAACAAG+AGG + chr7_2:71811429-71811448 Msa1074090:intron 20.0%
!!! GAGATTTTAATTGTATTATG+TGG + chr7_2:71811589-71811608 Msa1074090:intron 20.0%
!! TATATCTACAAGATTAGATT+AGG + chr7_2:71811728-71811747 Msa1074090:intron 20.0%
!! AAATAGTTAAAATACTGCAT+TGG - chr7_2:71811895-71811914 None:intergenic 20.0%
!!! ATGCAGTATTTTAACTATTT+AGG + chr7_2:71811895-71811914 Msa1074090:intron 20.0%
!!! TGATTTGTAATCTTTTTACA+AGG + chr7_2:71812001-71812020 Msa1074090:intron 20.0%
!! TGATATATATTACAATCCAA+TGG - chr7_2:71812042-71812061 None:intergenic 20.0%
!! TTCTTTATAGTTTACCAAAA+TGG + chr7_2:71812127-71812146 Msa1074090:intron 20.0%
!! CCTAAACTTTATTAAATACA+AGG - chr7_2:71812468-71812487 None:intergenic 20.0%
!! CCTTGTATTTAATAAAGTTT+AGG + chr7_2:71812465-71812484 Msa1074090:three_prime_UTR 20.0%
!! TTTGCTAATATTCCAATTTA+AGG + chr7_2:71811004-71811023 Msa1074090:intron 20.0%
!! AAGCTTAAAAGATTTCAAAA+TGG - chr7_2:71811228-71811247 None:intergenic 20.0%
!! TGTAAATCATAAAAGTTGTT+AGG + chr7_2:71811315-71811334 Msa1074090:intron 20.0%
!! AACTTAGTTTAAAAAACAAG+AGG + chr7_2:71811429-71811448 Msa1074090:intron 20.0%
!!! GAGATTTTAATTGTATTATG+TGG + chr7_2:71811589-71811608 Msa1074090:intron 20.0%
!! TATATCTACAAGATTAGATT+AGG + chr7_2:71811728-71811747 Msa1074090:intron 20.0%
!! AAATAGTTAAAATACTGCAT+TGG - chr7_2:71811895-71811914 None:intergenic 20.0%
!!! ATGCAGTATTTTAACTATTT+AGG + chr7_2:71811895-71811914 Msa1074090:intron 20.0%
!!! TGATTTGTAATCTTTTTACA+AGG + chr7_2:71812001-71812020 Msa1074090:intron 20.0%
!! TGATATATATTACAATCCAA+TGG - chr7_2:71812042-71812061 None:intergenic 20.0%
!! TTCTTTATAGTTTACCAAAA+TGG + chr7_2:71812127-71812146 Msa1074090:intron 20.0%
!! CCTAAACTTTATTAAATACA+AGG - chr7_2:71812468-71812487 None:intergenic 20.0%
!! CCTTGTATTTAATAAAGTTT+AGG + chr7_2:71812465-71812484 Msa1074090:three_prime_UTR 20.0%
! AATTTAACCGAATAAAACAG+AGG + chr7_2:71810385-71810404 Msa1074090:intron 25.0%
! GAACAAAAGATATAATCCAA+AGG - chr7_2:71810411-71810430 None:intergenic 25.0%
! ATTCAAGTATCAGAACTATA+GGG - chr7_2:71810696-71810715 None:intergenic 25.0%
!! GAATGTTTTTCTTTCAATCT+AGG + chr7_2:71810718-71810737 Msa1074090:intron 25.0%
!! TTTTCTTTCAATCTAGGAAA+TGG + chr7_2:71810724-71810743 Msa1074090:intron 25.0%
! TGATTGTTAGAATCTCTAAT+TGG + chr7_2:71810882-71810901 Msa1074090:intron 25.0%
! TTGAATAGGAATATGATTTC+TGG - chr7_2:71811081-71811100 None:intergenic 25.0%
! ATCATAAAAGTTGTTAGGTA+AGG + chr7_2:71811320-71811339 Msa1074090:intron 25.0%
! CAATATTTCGATCTTACAAA+GGG + chr7_2:71811799-71811818 Msa1074090:intron 25.0%
!! TAACTATTTAGGACTATTTG+AGG + chr7_2:71811906-71811925 Msa1074090:intron 25.0%
!! TTTGTAATCTTTTTACAAGG+TGG + chr7_2:71812004-71812023 Msa1074090:intron 25.0%
!! TTGTAATCTTTTTACAAGGT+GGG + chr7_2:71812005-71812024 Msa1074090:intron 25.0%
! ACTATGAAATTCTTTGTCTT+AGG - chr7_2:71812182-71812201 None:intergenic 25.0%
! ACAGTACACAAATAATACTT+TGG + chr7_2:71812366-71812385 Msa1074090:three_prime_UTR 25.0%
! AATAACATGAACAGTACTTA+AGG - chr7_2:71812503-71812522 None:intergenic 25.0%
! AACGGTTATTATGTTTCAAT+TGG - chr7_2:71812528-71812547 None:intergenic 25.0%
! AATTGAAACATAATAACCGT+TGG + chr7_2:71812527-71812546 Msa1074090:three_prime_UTR 25.0%
! AATTTAACCGAATAAAACAG+AGG + chr7_2:71810385-71810404 Msa1074090:intron 25.0%
! GAACAAAAGATATAATCCAA+AGG - chr7_2:71810411-71810430 None:intergenic 25.0%
! ATTCAAGTATCAGAACTATA+GGG - chr7_2:71810696-71810715 None:intergenic 25.0%
!! GAATGTTTTTCTTTCAATCT+AGG + chr7_2:71810718-71810737 Msa1074090:intron 25.0%
!! TTTTCTTTCAATCTAGGAAA+TGG + chr7_2:71810724-71810743 Msa1074090:intron 25.0%
! TGATTGTTAGAATCTCTAAT+TGG + chr7_2:71810882-71810901 Msa1074090:intron 25.0%
! TTGAATAGGAATATGATTTC+TGG - chr7_2:71811081-71811100 None:intergenic 25.0%
! ATCATAAAAGTTGTTAGGTA+AGG + chr7_2:71811320-71811339 Msa1074090:intron 25.0%
! CAATATTTCGATCTTACAAA+GGG + chr7_2:71811799-71811818 Msa1074090:intron 25.0%
!! TAACTATTTAGGACTATTTG+AGG + chr7_2:71811906-71811925 Msa1074090:intron 25.0%
!! TTTGTAATCTTTTTACAAGG+TGG + chr7_2:71812004-71812023 Msa1074090:intron 25.0%
!! TTGTAATCTTTTTACAAGGT+GGG + chr7_2:71812005-71812024 Msa1074090:intron 25.0%
! ACTATGAAATTCTTTGTCTT+AGG - chr7_2:71812182-71812201 None:intergenic 25.0%
! ACAGTACACAAATAATACTT+TGG + chr7_2:71812366-71812385 Msa1074090:three_prime_UTR 25.0%
! AATAACATGAACAGTACTTA+AGG - chr7_2:71812503-71812522 None:intergenic 25.0%
! AACGGTTATTATGTTTCAAT+TGG - chr7_2:71812528-71812547 None:intergenic 25.0%
! AATTGAAACATAATAACCGT+TGG + chr7_2:71812527-71812546 Msa1074090:three_prime_UTR 25.0%
!! TCCAAAAGTATTACATCCAA+GGG - chr7_2:71810438-71810457 None:intergenic 30.0%
!! ATCCAAAAGTATTACATCCA+AGG - chr7_2:71810439-71810458 None:intergenic 30.0%
!!! GAGTTTTTTGTGAAATGAAG+TGG - chr7_2:71810550-71810569 None:intergenic 30.0%
GTACAAAATAGCGAAAAGAA+GGG - chr7_2:71810660-71810679 None:intergenic 30.0%
GATTCAAGTATCAGAACTAT+AGG - chr7_2:71810697-71810716 None:intergenic 30.0%
TAGTAGACTGTCCAATTTAT+TGG + chr7_2:71810939-71810958 Msa1074090:intron 30.0%
ATTCGATGTCATAAACAGTT+TGG + chr7_2:71811124-71811143 Msa1074090:intron 30.0%
! TGTCTTTTGTGTATATGACT+TGG + chr7_2:71811193-71811212 Msa1074090:intron 30.0%
TTGATTACAGCTTGTATGTT+TGG + chr7_2:71811253-71811272 Msa1074090:intron 30.0%
AACGACAATCGAAATCATAA+TGG + chr7_2:71811285-71811304 Msa1074090:intron 30.0%
CATATATACACATACCACTT+TGG - chr7_2:71811381-71811400 None:intergenic 30.0%
AGTGGTATGTGTATATATGT+AGG + chr7_2:71811382-71811401 Msa1074090:intron 30.0%
ATGTGTATATATGTAGGTAC+AGG + chr7_2:71811388-71811407 Msa1074090:intron 30.0%
TGTGTATATATGTAGGTACA+GGG + chr7_2:71811389-71811408 Msa1074090:intron 30.0%
ATTTCTTACTGCTCTCAATT+TGG - chr7_2:71811509-71811528 None:intergenic 30.0%
TAATCTACTTAAGCACACTT+TGG - chr7_2:71811686-71811705 None:intergenic 30.0%
AAAGTGTGCTTAAGTAGATT+AGG + chr7_2:71811685-71811704 Msa1074090:intron 30.0%
CCTTTGTAAGATCGAAATAT+TGG - chr7_2:71811801-71811820 None:intergenic 30.0%
CCAATATTTCGATCTTACAA+AGG + chr7_2:71811798-71811817 Msa1074090:intron 30.0%
TGTAGAAAGAATTATGCATG+AGG + chr7_2:71811858-71811877 Msa1074090:intron 30.0%
AAAGATGGTGACAATTGAAT+GGG + chr7_2:71811938-71811957 Msa1074090:intron 30.0%
GAATTAAACATTCATGTTGC+TGG + chr7_2:71811978-71811997 Msa1074090:intron 30.0%
TTATAGTTTACCAAAATGGC+TGG + chr7_2:71812131-71812150 Msa1074090:intron 30.0%
ACAAAGAATTTCATAGTTGC+CGG + chr7_2:71812185-71812204 Msa1074090:CDS 30.0%
! GTTTGACAACTTTTGTCTTT+GGG + chr7_2:71812210-71812229 Msa1074090:CDS 30.0%
! TTTGACAACTTTTGTCTTTG+GGG + chr7_2:71812211-71812230 Msa1074090:CDS 30.0%
TACTTTAACTATTTCCATGC+TGG - chr7_2:71812435-71812454 None:intergenic 30.0%
ACGTGAAATACTTAATCCAA+CGG - chr7_2:71812546-71812565 None:intergenic 30.0%
AAAAATGAAGTGCGACAAAT+GGG - chr7_2:71812627-71812646 None:intergenic 30.0%
GTAATATGTAAGACGATGAA+AGG - chr7_2:71812650-71812669 None:intergenic 30.0%
!! TCCAAAAGTATTACATCCAA+GGG - chr7_2:71810438-71810457 None:intergenic 30.0%
!! ATCCAAAAGTATTACATCCA+AGG - chr7_2:71810439-71810458 None:intergenic 30.0%
!!! GAGTTTTTTGTGAAATGAAG+TGG - chr7_2:71810550-71810569 None:intergenic 30.0%
GTACAAAATAGCGAAAAGAA+GGG - chr7_2:71810660-71810679 None:intergenic 30.0%
GATTCAAGTATCAGAACTAT+AGG - chr7_2:71810697-71810716 None:intergenic 30.0%
TAGTAGACTGTCCAATTTAT+TGG + chr7_2:71810939-71810958 Msa1074090:intron 30.0%
ATTCGATGTCATAAACAGTT+TGG + chr7_2:71811124-71811143 Msa1074090:intron 30.0%
! TGTCTTTTGTGTATATGACT+TGG + chr7_2:71811193-71811212 Msa1074090:intron 30.0%
TTGATTACAGCTTGTATGTT+TGG + chr7_2:71811253-71811272 Msa1074090:intron 30.0%
AACGACAATCGAAATCATAA+TGG + chr7_2:71811285-71811304 Msa1074090:intron 30.0%
CATATATACACATACCACTT+TGG - chr7_2:71811381-71811400 None:intergenic 30.0%
AGTGGTATGTGTATATATGT+AGG + chr7_2:71811382-71811401 Msa1074090:intron 30.0%
ATGTGTATATATGTAGGTAC+AGG + chr7_2:71811388-71811407 Msa1074090:intron 30.0%
TGTGTATATATGTAGGTACA+GGG + chr7_2:71811389-71811408 Msa1074090:intron 30.0%
ATTTCTTACTGCTCTCAATT+TGG - chr7_2:71811509-71811528 None:intergenic 30.0%
TAATCTACTTAAGCACACTT+TGG - chr7_2:71811686-71811705 None:intergenic 30.0%
AAAGTGTGCTTAAGTAGATT+AGG + chr7_2:71811685-71811704 Msa1074090:intron 30.0%
CCTTTGTAAGATCGAAATAT+TGG - chr7_2:71811801-71811820 None:intergenic 30.0%
CCAATATTTCGATCTTACAA+AGG + chr7_2:71811798-71811817 Msa1074090:intron 30.0%
TGTAGAAAGAATTATGCATG+AGG + chr7_2:71811858-71811877 Msa1074090:intron 30.0%
AAAGATGGTGACAATTGAAT+GGG + chr7_2:71811938-71811957 Msa1074090:intron 30.0%
GAATTAAACATTCATGTTGC+TGG + chr7_2:71811978-71811997 Msa1074090:intron 30.0%
TTATAGTTTACCAAAATGGC+TGG + chr7_2:71812131-71812150 Msa1074090:intron 30.0%
ACAAAGAATTTCATAGTTGC+CGG + chr7_2:71812185-71812204 Msa1074090:CDS 30.0%
! GTTTGACAACTTTTGTCTTT+GGG + chr7_2:71812210-71812229 Msa1074090:CDS 30.0%
! TTTGACAACTTTTGTCTTTG+GGG + chr7_2:71812211-71812230 Msa1074090:CDS 30.0%
TACTTTAACTATTTCCATGC+TGG - chr7_2:71812435-71812454 None:intergenic 30.0%
ACGTGAAATACTTAATCCAA+CGG - chr7_2:71812546-71812565 None:intergenic 30.0%
AAAAATGAAGTGCGACAAAT+GGG - chr7_2:71812627-71812646 None:intergenic 30.0%
GTAATATGTAAGACGATGAA+AGG - chr7_2:71812650-71812669 None:intergenic 30.0%
!! AAAAGTATTACATCCAAGGG+TGG - chr7_2:71810435-71810454 None:intergenic 35.0%
! ACCCTTGGATGTAATACTTT+TGG + chr7_2:71810434-71810453 Msa1074090:intron 35.0%
TTACAGGTAGAGTACAGAAA+GGG - chr7_2:71810464-71810483 None:intergenic 35.0%
TTTACAGGTAGAGTACAGAA+AGG - chr7_2:71810465-71810484 None:intergenic 35.0%
! TCTTCTCAGTTTTTGTGTTG+TGG - chr7_2:71810496-71810515 None:intergenic 35.0%
CGTACAAAATAGCGAAAAGA+AGG - chr7_2:71810661-71810680 None:intergenic 35.0%
!! GCTATTTTGTACGTTGAACA+CGG + chr7_2:71810668-71810687 Msa1074090:intron 35.0%
ATAGGGTTTATGCGAAAAGA+GGG - chr7_2:71810827-71810846 None:intergenic 35.0%
AATAGGGTTTATGCGAAAAG+AGG - chr7_2:71810828-71810847 None:intergenic 35.0%
ACTAGGAGCAACCAATAAAT+TGG - chr7_2:71810953-71810972 None:intergenic 35.0%
AACACACAGACTCCTTAAAT+TGG - chr7_2:71811019-71811038 None:intergenic 35.0%
TCAAACCTAATAGACCATAG+AGG - chr7_2:71811051-71811070 None:intergenic 35.0%
CTATTCAATTGTCCTTGATC+CGG + chr7_2:71811093-71811112 Msa1074090:intron 35.0%
TGACATCGAATTCAAAAGAC+CGG - chr7_2:71811115-71811134 None:intergenic 35.0%
!! TGTCATAAACAGTTTGGTGT+TGG + chr7_2:71811130-71811149 Msa1074090:intron 35.0%
! TGGTGTTGGAATTATACTCT+TGG + chr7_2:71811144-71811163 Msa1074090:intron 35.0%
!! TTTGGTTTGGGAAAACTAGT+GGG - chr7_2:71811363-71811382 None:intergenic 35.0%
! TACACATACCACTTTGGTTT+GGG - chr7_2:71811375-71811394 None:intergenic 35.0%
ATACACATACCACTTTGGTT+TGG - chr7_2:71811376-71811395 None:intergenic 35.0%
GTGTATATATGTAGGTACAG+GGG + chr7_2:71811390-71811409 Msa1074090:intron 35.0%
GGAAAAGGAATGCTAAAGAA+AGG + chr7_2:71811463-71811482 Msa1074090:intron 35.0%
GCTAAAGAAAGGATAAGACA+CGG + chr7_2:71811474-71811493 Msa1074090:intron 35.0%
TTACTGCTCTCAATTTGGTT+TGG - chr7_2:71811504-71811523 None:intergenic 35.0%
TCGTATGATTTCAATGAGAG+TGG + chr7_2:71811544-71811563 Msa1074090:intron 35.0%
TTGAGGTGTATTCAGAAAGA+TGG + chr7_2:71811923-71811942 Msa1074090:intron 35.0%
GAAAGATGGTGACAATTGAA+TGG + chr7_2:71811937-71811956 Msa1074090:intron 35.0%
GTGGGAATAATTTGATCCAT+TGG + chr7_2:71812023-71812042 Msa1074090:intron 35.0%
CAAAGAATTTCATAGTTGCC+GGG + chr7_2:71812186-71812205 Msa1074090:CDS 35.0%
AAAGAATTTCATAGTTGCCG+GGG + chr7_2:71812187-71812206 Msa1074090:CDS 35.0%
! GGTTTGACAACTTTTGTCTT+TGG + chr7_2:71812209-71812228 Msa1074090:CDS 35.0%
! TTTGGTTGTACGCAATGTTT+TGG + chr7_2:71812384-71812403 Msa1074090:three_prime_UTR 35.0%
!!! TTGTACGCAATGTTTTGGTT+TGG + chr7_2:71812389-71812408 Msa1074090:three_prime_UTR 35.0%
!!! TGTACGCAATGTTTTGGTTT+GGG + chr7_2:71812390-71812409 Msa1074090:three_prime_UTR 35.0%
TAACTATTTCCATGCTGGAA+GGG - chr7_2:71812430-71812449 None:intergenic 35.0%
TTAACTATTTCCATGCTGGA+AGG - chr7_2:71812431-71812450 None:intergenic 35.0%
CGACAAATGGGGAAAAATAA+TGG - chr7_2:71812615-71812634 None:intergenic 35.0%
AAAATGAAGTGCGACAAATG+GGG - chr7_2:71812626-71812645 None:intergenic 35.0%
GAAAAATGAAGTGCGACAAA+TGG - chr7_2:71812628-71812647 None:intergenic 35.0%
!! AAAAGTATTACATCCAAGGG+TGG - chr7_2:71810435-71810454 None:intergenic 35.0%
! ACCCTTGGATGTAATACTTT+TGG + chr7_2:71810434-71810453 Msa1074090:intron 35.0%
TTACAGGTAGAGTACAGAAA+GGG - chr7_2:71810464-71810483 None:intergenic 35.0%
TTTACAGGTAGAGTACAGAA+AGG - chr7_2:71810465-71810484 None:intergenic 35.0%
! TCTTCTCAGTTTTTGTGTTG+TGG - chr7_2:71810496-71810515 None:intergenic 35.0%
CGTACAAAATAGCGAAAAGA+AGG - chr7_2:71810661-71810680 None:intergenic 35.0%
!! GCTATTTTGTACGTTGAACA+CGG + chr7_2:71810668-71810687 Msa1074090:intron 35.0%
ATAGGGTTTATGCGAAAAGA+GGG - chr7_2:71810827-71810846 None:intergenic 35.0%
AATAGGGTTTATGCGAAAAG+AGG - chr7_2:71810828-71810847 None:intergenic 35.0%
ACTAGGAGCAACCAATAAAT+TGG - chr7_2:71810953-71810972 None:intergenic 35.0%
AACACACAGACTCCTTAAAT+TGG - chr7_2:71811019-71811038 None:intergenic 35.0%
TCAAACCTAATAGACCATAG+AGG - chr7_2:71811051-71811070 None:intergenic 35.0%
CTATTCAATTGTCCTTGATC+CGG + chr7_2:71811093-71811112 Msa1074090:intron 35.0%
TGACATCGAATTCAAAAGAC+CGG - chr7_2:71811115-71811134 None:intergenic 35.0%
!! TGTCATAAACAGTTTGGTGT+TGG + chr7_2:71811130-71811149 Msa1074090:intron 35.0%
! TGGTGTTGGAATTATACTCT+TGG + chr7_2:71811144-71811163 Msa1074090:intron 35.0%
!! TTTGGTTTGGGAAAACTAGT+GGG - chr7_2:71811363-71811382 None:intergenic 35.0%
! TACACATACCACTTTGGTTT+GGG - chr7_2:71811375-71811394 None:intergenic 35.0%
ATACACATACCACTTTGGTT+TGG - chr7_2:71811376-71811395 None:intergenic 35.0%
GTGTATATATGTAGGTACAG+GGG + chr7_2:71811390-71811409 Msa1074090:intron 35.0%
GGAAAAGGAATGCTAAAGAA+AGG + chr7_2:71811463-71811482 Msa1074090:intron 35.0%
GCTAAAGAAAGGATAAGACA+CGG + chr7_2:71811474-71811493 Msa1074090:intron 35.0%
TTACTGCTCTCAATTTGGTT+TGG - chr7_2:71811504-71811523 None:intergenic 35.0%
TCGTATGATTTCAATGAGAG+TGG + chr7_2:71811544-71811563 Msa1074090:intron 35.0%
TTGAGGTGTATTCAGAAAGA+TGG + chr7_2:71811923-71811942 Msa1074090:intron 35.0%
GAAAGATGGTGACAATTGAA+TGG + chr7_2:71811937-71811956 Msa1074090:intron 35.0%
GTGGGAATAATTTGATCCAT+TGG + chr7_2:71812023-71812042 Msa1074090:intron 35.0%
CAAAGAATTTCATAGTTGCC+GGG + chr7_2:71812186-71812205 Msa1074090:CDS 35.0%
AAAGAATTTCATAGTTGCCG+GGG + chr7_2:71812187-71812206 Msa1074090:CDS 35.0%
! GGTTTGACAACTTTTGTCTT+TGG + chr7_2:71812209-71812228 Msa1074090:CDS 35.0%
! TTTGGTTGTACGCAATGTTT+TGG + chr7_2:71812384-71812403 Msa1074090:three_prime_UTR 35.0%
!!! TTGTACGCAATGTTTTGGTT+TGG + chr7_2:71812389-71812408 Msa1074090:three_prime_UTR 35.0%
!!! TGTACGCAATGTTTTGGTTT+GGG + chr7_2:71812390-71812409 Msa1074090:three_prime_UTR 35.0%
TAACTATTTCCATGCTGGAA+GGG - chr7_2:71812430-71812449 None:intergenic 35.0%
TTAACTATTTCCATGCTGGA+AGG - chr7_2:71812431-71812450 None:intergenic 35.0%
CGACAAATGGGGAAAAATAA+TGG - chr7_2:71812615-71812634 None:intergenic 35.0%
AAAATGAAGTGCGACAAATG+GGG - chr7_2:71812626-71812645 None:intergenic 35.0%
GAAAAATGAAGTGCGACAAA+TGG - chr7_2:71812628-71812647 None:intergenic 35.0%
!! CCAAAGGCCTCTGTTTTATT+CGG - chr7_2:71810395-71810414 None:intergenic 40.0%
! TATCTTTTGTTCTCCACCCT+TGG + chr7_2:71810419-71810438 Msa1074090:intron 40.0%
! TCTCAGTTTTTGTGTTGTGG+CGG - chr7_2:71810493-71810512 None:intergenic 40.0%
AGAAGAGAAAGAGAAAGCGA+CGG - chr7_2:71810619-71810638 None:intergenic 40.0%
TAGGGTTTATGCGAAAAGAG+GGG - chr7_2:71810826-71810845 None:intergenic 40.0%
TCAACCACAGACAACAAACT+AGG - chr7_2:71810970-71810989 None:intergenic 40.0%
GTGTTAGAATCAGACCTCTA+TGG + chr7_2:71811034-71811053 Msa1074090:intron 40.0%
TCAGACCTCTATGGTCTATT+AGG + chr7_2:71811043-71811062 Msa1074090:intron 40.0%
CGGATCAAGGACAATTGAAT+AGG - chr7_2:71811095-71811114 None:intergenic 40.0%
GAATTCAAAAGACCGGATCA+AGG - chr7_2:71811108-71811127 None:intergenic 40.0%
!! TTGGTTTGGGAAAACTAGTG+GGG - chr7_2:71811362-71811381 None:intergenic 40.0%
!! CTTTGGTTTGGGAAAACTAG+TGG - chr7_2:71811364-71811383 None:intergenic 40.0%
!! CTAGTTTTCCCAAACCAAAG+TGG + chr7_2:71811364-71811383 Msa1074090:intron 40.0%
AAACAAGAGGCTAAGATGTG+AGG + chr7_2:71811442-71811461 Msa1074090:intron 40.0%
AGATTAGGAAAGCAACTGTG+AGG + chr7_2:71811700-71811719 Msa1074090:intron 40.0%
! ACCAAAATGGCTGGAGTATT+AGG + chr7_2:71812140-71812159 Msa1074090:CDS 40.0%
! TCCTAATACTCCAGCCATTT+TGG - chr7_2:71812144-71812163 None:intergenic 40.0%
! GCTGGAGTATTAGGATATAG+TGG + chr7_2:71812149-71812168 Msa1074090:CDS 40.0%
AGTATTAGGATATAGTGGCC+TGG + chr7_2:71812154-71812173 Msa1074090:CDS 40.0%
AAGAATTTCATAGTTGCCGG+GGG + chr7_2:71812188-71812207 Msa1074090:CDS 40.0%
! AATGCTTGATTCGCCTTCTT+TGG - chr7_2:71812318-71812337 None:intergenic 40.0%
CGAATCAAGCATTCCATCAA+AGG + chr7_2:71812325-71812344 Msa1074090:CDS 40.0%
ACTGTAAGCAACTAAGCTCT+AGG - chr7_2:71812351-71812370 None:intergenic 40.0%
ACGTGAGACTCAATATCTCT+TGG + chr7_2:71812562-71812581 Msa1074090:three_prime_UTR 40.0%
!! CCAAAGGCCTCTGTTTTATT+CGG - chr7_2:71810395-71810414 None:intergenic 40.0%
! TATCTTTTGTTCTCCACCCT+TGG + chr7_2:71810419-71810438 Msa1074090:intron 40.0%
! TCTCAGTTTTTGTGTTGTGG+CGG - chr7_2:71810493-71810512 None:intergenic 40.0%
AGAAGAGAAAGAGAAAGCGA+CGG - chr7_2:71810619-71810638 None:intergenic 40.0%
TAGGGTTTATGCGAAAAGAG+GGG - chr7_2:71810826-71810845 None:intergenic 40.0%
TCAACCACAGACAACAAACT+AGG - chr7_2:71810970-71810989 None:intergenic 40.0%
GTGTTAGAATCAGACCTCTA+TGG + chr7_2:71811034-71811053 Msa1074090:intron 40.0%
TCAGACCTCTATGGTCTATT+AGG + chr7_2:71811043-71811062 Msa1074090:intron 40.0%
CGGATCAAGGACAATTGAAT+AGG - chr7_2:71811095-71811114 None:intergenic 40.0%
GAATTCAAAAGACCGGATCA+AGG - chr7_2:71811108-71811127 None:intergenic 40.0%
!! TTGGTTTGGGAAAACTAGTG+GGG - chr7_2:71811362-71811381 None:intergenic 40.0%
!! CTTTGGTTTGGGAAAACTAG+TGG - chr7_2:71811364-71811383 None:intergenic 40.0%
!! CTAGTTTTCCCAAACCAAAG+TGG + chr7_2:71811364-71811383 Msa1074090:intron 40.0%
AAACAAGAGGCTAAGATGTG+AGG + chr7_2:71811442-71811461 Msa1074090:intron 40.0%
AGATTAGGAAAGCAACTGTG+AGG + chr7_2:71811700-71811719 Msa1074090:intron 40.0%
! ACCAAAATGGCTGGAGTATT+AGG + chr7_2:71812140-71812159 Msa1074090:CDS 40.0%
! TCCTAATACTCCAGCCATTT+TGG - chr7_2:71812144-71812163 None:intergenic 40.0%
! GCTGGAGTATTAGGATATAG+TGG + chr7_2:71812149-71812168 Msa1074090:CDS 40.0%
AGTATTAGGATATAGTGGCC+TGG + chr7_2:71812154-71812173 Msa1074090:CDS 40.0%
AAGAATTTCATAGTTGCCGG+GGG + chr7_2:71812188-71812207 Msa1074090:CDS 40.0%
! AATGCTTGATTCGCCTTCTT+TGG - chr7_2:71812318-71812337 None:intergenic 40.0%
CGAATCAAGCATTCCATCAA+AGG + chr7_2:71812325-71812344 Msa1074090:CDS 40.0%
ACTGTAAGCAACTAAGCTCT+AGG - chr7_2:71812351-71812370 None:intergenic 40.0%
ACGTGAGACTCAATATCTCT+TGG + chr7_2:71812562-71812581 Msa1074090:three_prime_UTR 40.0%
CCGAATAAAACAGAGGCCTT+TGG + chr7_2:71810392-71810411 Msa1074090:intron 45.0%
TGTGAAATGAAGTGGCAGCT+TGG - chr7_2:71810542-71810561 None:intergenic 45.0%
! GTCGCTTTCTCTTTCTCTTC+TGG + chr7_2:71810618-71810637 Msa1074090:CDS 45.0%
!! TGCTCCTAGTTTGTTGTCTG+TGG + chr7_2:71810963-71810982 Msa1074090:intron 45.0%
GAGGCTAAGATGTGAGGAAA+AGG + chr7_2:71811448-71811467 Msa1074090:intron 45.0%
AATTCTTTGTCTTAGGCGCC+AGG - chr7_2:71812175-71812194 None:intergenic 45.0%
GACAAAAGTTGTCAAACCCC+CGG - chr7_2:71812207-71812226 None:intergenic 45.0%
TTCTACACCATGAGAGCAGT+TGG + chr7_2:71812239-71812258 Msa1074090:CDS 45.0%
!! TGGAGGTACTGATGAACTAC+AGG + chr7_2:71812259-71812278 Msa1074090:CDS 45.0%
!! ACTAAGCTCTAGGCCTTTGA+TGG - chr7_2:71812341-71812360 None:intergenic 45.0%
! AGCTTTTAACCCTTCCAGCA+TGG + chr7_2:71812418-71812437 Msa1074090:three_prime_UTR 45.0%
CCGAATAAAACAGAGGCCTT+TGG + chr7_2:71810392-71810411 Msa1074090:intron 45.0%
TGTGAAATGAAGTGGCAGCT+TGG - chr7_2:71810542-71810561 None:intergenic 45.0%
! GTCGCTTTCTCTTTCTCTTC+TGG + chr7_2:71810618-71810637 Msa1074090:CDS 45.0%
!! TGCTCCTAGTTTGTTGTCTG+TGG + chr7_2:71810963-71810982 Msa1074090:intron 45.0%
GAGGCTAAGATGTGAGGAAA+AGG + chr7_2:71811448-71811467 Msa1074090:intron 45.0%
AATTCTTTGTCTTAGGCGCC+AGG - chr7_2:71812175-71812194 None:intergenic 45.0%
GACAAAAGTTGTCAAACCCC+CGG - chr7_2:71812207-71812226 None:intergenic 45.0%
TTCTACACCATGAGAGCAGT+TGG + chr7_2:71812239-71812258 Msa1074090:CDS 45.0%
!! TGGAGGTACTGATGAACTAC+AGG + chr7_2:71812259-71812278 Msa1074090:CDS 45.0%
!! ACTAAGCTCTAGGCCTTTGA+TGG - chr7_2:71812341-71812360 None:intergenic 45.0%
! AGCTTTTAACCCTTCCAGCA+TGG + chr7_2:71812418-71812437 Msa1074090:three_prime_UTR 45.0%
GTAGGTACAGGGGTAGTTCA+AGG + chr7_2:71811400-71811419 Msa1074090:intron 50.0%
TACACCATGAGAGCAGTTGG+AGG + chr7_2:71812242-71812261 Msa1074090:CDS 50.0%
AGTACCTCCAACTGCTCTCA+TGG - chr7_2:71812249-71812268 None:intergenic 50.0%
!! GCCTTCTTTGGTGCTCTTGT+CGG - chr7_2:71812306-71812325 None:intergenic 50.0%
GTAGGTACAGGGGTAGTTCA+AGG + chr7_2:71811400-71811419 Msa1074090:intron 50.0%
TACACCATGAGAGCAGTTGG+AGG + chr7_2:71812242-71812261 Msa1074090:CDS 50.0%
AGTACCTCCAACTGCTCTCA+TGG - chr7_2:71812249-71812268 None:intergenic 50.0%
!! GCCTTCTTTGGTGCTCTTGT+CGG - chr7_2:71812306-71812325 None:intergenic 50.0%
!! GTTGTGGCGGTGCTGTTTAC+AGG - chr7_2:71810480-71810499 None:intergenic 55.0%
TCACTAAAACGCCGCCGTAG+AGG + chr7_2:71810568-71810587 Msa1074090:CDS 55.0%
AGAAAGAGAAAGCGACGGCG+AGG - chr7_2:71810614-71810633 None:intergenic 55.0%
!! GCCGACAAGAGCACCAAAGA+AGG + chr7_2:71812302-71812321 Msa1074090:CDS 55.0%
!! GTTGTGGCGGTGCTGTTTAC+AGG - chr7_2:71810480-71810499 None:intergenic 55.0%
TCACTAAAACGCCGCCGTAG+AGG + chr7_2:71810568-71810587 Msa1074090:CDS 55.0%
AGAAAGAGAAAGCGACGGCG+AGG - chr7_2:71810614-71810633 None:intergenic 55.0%
!! GCCGACAAGAGCACCAAAGA+AGG + chr7_2:71812302-71812321 Msa1074090:CDS 55.0%
AAGAGAAAGCGACGGCGAGG+TGG - chr7_2:71810611-71810630 None:intergenic 60.0%
AAGAGAAAGCGACGGCGAGG+TGG - chr7_2:71810611-71810630 None:intergenic 60.0%
CGGTCTTGGGTCCTCTACGG+CGG - chr7_2:71810582-71810601 None:intergenic 65.0%
CGGCGGTCTTGGGTCCTCTA+CGG - chr7_2:71810585-71810604 None:intergenic 65.0%
CGGTCTTGGGTCCTCTACGG+CGG - chr7_2:71810582-71810601 None:intergenic 65.0%
CGGCGGTCTTGGGTCCTCTA+CGG - chr7_2:71810585-71810604 None:intergenic 65.0%
GAGGTGGACGCGGCGGTCTT+GGG - chr7_2:71810595-71810614 None:intergenic 70.0%
AAGCGACGGCGAGGTGGACG+CGG - chr7_2:71810605-71810624 None:intergenic 70.0%
GAGGTGGACGCGGCGGTCTT+GGG - chr7_2:71810595-71810614 None:intergenic 70.0%
AAGCGACGGCGAGGTGGACG+CGG - chr7_2:71810605-71810624 None:intergenic 70.0%
CGAGGTGGACGCGGCGGTCT+TGG - chr7_2:71810596-71810615 None:intergenic 75.0%
CGAGGTGGACGCGGCGGTCT+TGG - chr7_2:71810596-71810615 None:intergenic 75.0%
! CGACGGCGAGGTGGACGCGG+CGG - chr7_2:71810602-71810621 None:intergenic 80.0%
! CGACGGCGAGGTGGACGCGG+CGG - chr7_2:71810602-71810621 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 71810364 71812751 71810364 ID=Msa1074090;Name=Msa1074090
chr7_2 mRNA 71810364 71812751 71810364 ID=Msa1074090-mRNA-1;Parent=Msa1074090;Name=Msa1074090-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.5|0.33|0.66|0|0.33|3|399|105
chr7_2 exon 71810364 71810369 71810364 ID=Msa1074090-mRNA-1:exon:16378;Parent=Msa1074090-mRNA-1
chr7_2 exon 71810544 71810639 71810544 ID=Msa1074090-mRNA-1:exon:16379;Parent=Msa1074090-mRNA-1
chr7_2 exon 71812137 71812751 71812137 ID=Msa1074090-mRNA-1:exon:16380;Parent=Msa1074090-mRNA-1
chr7_2 CDS 71810364 71810369 71810364 ID=Msa1074090-mRNA-1:cds;Parent=Msa1074090-mRNA-1
chr7_2 CDS 71810544 71810639 71810544 ID=Msa1074090-mRNA-1:cds;Parent=Msa1074090-mRNA-1
chr7_2 CDS 71812137 71812352 71812137 ID=Msa1074090-mRNA-1:cds;Parent=Msa1074090-mRNA-1
chr7_2 three_prime_UTR 71812353 71812751 71812353 ID=Msa1074090-mRNA-1:three_prime_utr;Parent=Msa1074090-mRNA-1
Gene Sequence

>Msa1074090

GTCATTCTGCCACTTCATTTCACAAAAAACTCACTAAAACGCCGCCGTAGAGGACCCAAGACCGCCGCGTCCACCTCGCCGTCGCTTTCTCTTTCTCTTCTGTTTACCAAAATGGCTGGAGTATTAGGATATAGTGGCCTGGCGCCTAAGACAAAGAATTTCATAGTTGCCGGGGGTTTGACAACTTTTGTCTTTGGGGCATACTTCTACACCATGAGAGCAGTTGGAGGTACTGATGAACTACAGGTAGCAATAGATAAGTTTGAAGCCGACAAGAGCACCAAAGAAGGCGAATCAAGCATTCCATCAAAGGCCTAG
Protein sequence

>Msa1074090

VILPLHFTKNSLKRRRRGPKTAASTSPSLSLSLLFTKMAGVLGYSGLAPKTKNFIVAGGLTTFVFGAYFYTMRAVGGTDELQVAIDKFEADKSTKEGESSIPSKA*