AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1075230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1075230 MtrunA17_Chr7g0258621 93.333 105 7 0 1 105 1 105 4.15e-57 171
Msa1075230 MtrunA17_Chr7g0258631 91.089 101 9 0 1 101 1 101 6.25e-51 155
Msa1075230 MtrunA17_Chr7g0258641 83.562 73 12 0 4 76 3 75 8.50e-36 120
Msa1075230 MtrunA17_Chr1g0175211 67.500 80 23 1 5 81 4 83 4.86e-30 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1075230 AT5G06760.1 64.179 67 24 0 10 76 2 68 1.55e-24 91.3

Find 54 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACCCTTTCTTCTTTCTTT+TGG 0.103265 7_2:+73399892 None:intergenic
TACCTTATCAATCAATTATT+TGG 0.132508 7_2:+73401274 None:intergenic
TTTGGGTTGCCATCTCCTTT+TGG 0.220100 7_2:+73399910 None:intergenic
GTTGGCAGCTGTCTCCTTAA+TGG 0.241135 7_2:+73401197 None:intergenic
CTTCTCTTGAACAGTGGCCT+TGG 0.334474 7_2:+73401140 None:intergenic
AGCCACCACCGGGCACCAAT+TGG 0.345146 7_2:-73399823 Msa1075230:CDS
GCCACCACCGGGCACCAATT+GGG 0.352332 7_2:-73399822 Msa1075230:CDS
GGACACCACACCACGGGAAC+TGG 0.359178 7_2:-73399792 Msa1075230:CDS
GCTCAAACGAGGAGTCAGTT+TGG 0.390088 7_2:-73399762 Msa1075230:CDS
CTCAAACGAGGAGTCAGTTT+GGG 0.391807 7_2:-73399761 Msa1075230:CDS
ATTGGTGCTTCAGCCAAATC+TGG 0.410427 7_2:-73401174 Msa1075230:CDS
GGTGTCCACCCTGCCCCAAT+TGG 0.432127 7_2:+73399808 None:intergenic
CCCCAATTGGTGCCCGGTGG+TGG 0.440868 7_2:+73399821 None:intergenic
CCTCTTTATCAAGCTCAGTC+TGG 0.456118 7_2:+73399868 None:intergenic
GTACCCTAGCGTAGTGTGTA+TGG 0.460570 7_2:-73399655 Msa1075230:three_prime_UTR
GGCCAAATAATTGATTGATA+AGG 0.475678 7_2:-73401276 Msa1075230:five_prime_UTR
ATCAATAAAGTAACATAAGA+AGG 0.476965 7_2:-73399682 Msa1075230:three_prime_UTR
CACCACACCACGGGAACTGG+TGG 0.486869 7_2:-73399789 Msa1075230:CDS
CAGGGTGGACACCACACCAC+GGG 0.488696 7_2:-73399798 Msa1075230:CDS
AAAGAAAAGAAACTCATAAG+AGG 0.491810 7_2:-73401297 Msa1075230:five_prime_UTR
GCATGTGGTCTTCAACATCC+TGG 0.506941 7_2:-73401322 None:intergenic
CCCCACCAGTTCCCGTGGTG+TGG 0.523168 7_2:+73399787 None:intergenic
CCAGACTGAGCTTGATAAAG+AGG 0.529874 7_2:-73399868 Msa1075230:CDS
TTTGGCTGAAGCACCAATGT+TGG 0.533030 7_2:+73401179 None:intergenic
AACCCAAAAGAAAGAAGAAA+GGG 0.533989 7_2:-73399895 Msa1075230:CDS
CACAACGCTGCAGCCACCAC+CGG 0.534674 7_2:-73399834 Msa1075230:CDS
GGGCTGTGAGTCACATGGTA+TGG 0.542076 7_2:-73399741 Msa1075230:exon
AGCAGCCCCACCAGTTCCCG+TGG 0.542543 7_2:+73399782 None:intergenic
CCACACCACGGGAACTGGTG+GGG 0.542809 7_2:-73399787 Msa1075230:CDS
ATCACATGATCCCATCCAAA+AGG 0.545171 7_2:-73399925 Msa1075230:CDS
ACAACCATACACACTACGCT+AGG 0.545992 7_2:+73399651 None:intergenic
CAACCCAAAAGAAAGAAGAA+AGG 0.548482 7_2:-73399896 Msa1075230:CDS
CCACCACCGGGCACCAATTG+GGG 0.551603 7_2:-73399821 Msa1075230:CDS
AGAACAATCCACGTAAAAGT+AGG 0.562079 7_2:+73399560 None:intergenic
ACCACACCACGGGAACTGGT+GGG 0.566675 7_2:-73399788 Msa1075230:CDS
AAGGAGACAGCTGCCAACAT+TGG 0.570685 7_2:-73401192 Msa1075230:CDS
ACAACGCTGCAGCCACCACC+GGG 0.572456 7_2:-73399833 Msa1075230:CDS
TATGGAACTAGTGGTACTTA+CGG 0.577593 7_2:-73399723 Msa1075230:three_prime_UTR
TGCTTCAGCCAAATCTGGCA+TGG 0.578401 7_2:-73401169 Msa1075230:CDS
CAAGGCCACTGTTCAAGAGA+AGG 0.599228 7_2:-73401139 Msa1075230:intron
AATTACCTTCTCTTGAACAG+TGG 0.606946 7_2:+73401134 None:intergenic
TGATCCCATCCAAAAGGAGA+TGG 0.612267 7_2:-73399919 Msa1075230:CDS
CTGGTGGGGCTGCTCAAACG+AGG 0.620605 7_2:-73399773 Msa1075230:CDS
GCAGGGTGGACACCACACCA+CGG 0.630908 7_2:-73399799 Msa1075230:CDS
GTCACATGGTATGGAACTAG+TGG 0.632095 7_2:-73399732 Msa1075230:three_prime_UTR
ACCGGGCACCAATTGGGGCA+GGG 0.632230 7_2:-73399816 Msa1075230:CDS
CAACCATACACACTACGCTA+GGG 0.636498 7_2:+73399652 None:intergenic
TAGGAACTTCCACAAACTCA+TGG 0.649815 7_2:+73399579 None:intergenic
GACTGAGCTTGATAAAGAGG+CGG 0.655380 7_2:-73399865 Msa1075230:CDS
ATCTGGCATGGAAAAGACCA+AGG 0.660335 7_2:-73401157 Msa1075230:CDS
GGGCACCAATTGGGGCAGGG+TGG 0.662871 7_2:-73399813 Msa1075230:CDS
AGTTTGGGCTGTGAGTCACA+TGG 0.670533 7_2:-73399746 Msa1075230:exon
CTGCCCCAATTGGTGCCCGG+TGG 0.696266 7_2:+73399818 None:intergenic
GGAACTAGTGGTACTTACGG+TGG 0.732249 7_2:-73399720 Msa1075230:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTCATTTTATATAAATAA+GGG - chr7_2:73399708-73399727 Msa1075230:three_prime_UTR 10.0%
!!! AAATGTGATTTATTTTTATA+AGG + chr7_2:73400328-73400347 None:intergenic 10.0%
!!! AAACAAATTTTAATTTAACA+GGG + chr7_2:73400249-73400268 None:intergenic 10.0%
!!! TAAACAAATTTTAATTTAAC+AGG + chr7_2:73400248-73400267 None:intergenic 10.0%
!!! AAATTTTCATTAATTTTGTA+GGG + chr7_2:73399903-73399922 None:intergenic 10.0%
!!! AATTTGAAATTTTTTTTGTA+GGG + chr7_2:73400082-73400101 None:intergenic 10.0%
!!! TAATTTGAAATTTTTTTTGT+AGG + chr7_2:73400083-73400102 None:intergenic 10.0%
!!! TAAACAAATTTTAATTTAAC+AGG - chr7_2:73400248-73400267 Msa1075230:intron 10.0%
!!! AAACAAATTTTAATTTAACA+GGG - chr7_2:73400249-73400268 Msa1075230:intron 10.0%
!!! AAAATGTGATTTATTTTTAT+AGG - chr7_2:73400327-73400346 Msa1075230:intron 10.0%
!!! AAATGTGATTTATTTTTATA+GGG - chr7_2:73400328-73400347 Msa1075230:intron 10.0%
!!! CTTTCATTTTATATAAATAA+GGG - chr7_2:73399708-73399727 Msa1075230:three_prime_UTR 10.0%
!!! AAATGTGATTTATTTTTATA+AGG + chr7_2:73400328-73400347 None:intergenic 10.0%
!!! AAACAAATTTTAATTTAACA+GGG + chr7_2:73400249-73400268 None:intergenic 10.0%
!!! TAAACAAATTTTAATTTAAC+AGG + chr7_2:73400248-73400267 None:intergenic 10.0%
!!! AAATTTTCATTAATTTTGTA+GGG + chr7_2:73399903-73399922 None:intergenic 10.0%
!!! AATTTGAAATTTTTTTTGTA+GGG + chr7_2:73400082-73400101 None:intergenic 10.0%
!!! TAATTTGAAATTTTTTTTGT+AGG + chr7_2:73400083-73400102 None:intergenic 10.0%
!!! TAAACAAATTTTAATTTAAC+AGG - chr7_2:73400248-73400267 Msa1075230:intron 10.0%
!!! AAACAAATTTTAATTTAACA+GGG - chr7_2:73400249-73400268 Msa1075230:intron 10.0%
!!! AAAATGTGATTTATTTTTAT+AGG - chr7_2:73400327-73400346 Msa1075230:intron 10.0%
!!! AAATGTGATTTATTTTTATA+GGG - chr7_2:73400328-73400347 Msa1075230:intron 10.0%
!!! CCTTATTTATATAAAATGAA+AGG + chr7_2:73399710-73399729 None:intergenic 15.0%
!!! CCTTTCATTTTATATAAATA+AGG - chr7_2:73399707-73399726 Msa1075230:three_prime_UTR 15.0%
!!! CAAATTTTCATTAATTTTGT+AGG + chr7_2:73399904-73399923 None:intergenic 15.0%
!! CTACAAAATTAATGAAAATT+TGG - chr7_2:73399902-73399921 Msa1075230:CDS 15.0%
!!! TATGTTTTATCTTGAAATTT+TGG - chr7_2:73399936-73399955 Msa1075230:CDS 15.0%
!!! TATGTTTTATCTTGAAATTT+TGG - chr7_2:73399936-73399955 Msa1075230:CDS 15.0%
!!! AGTTAACATTTTTTTTTTGT+TGG - chr7_2:73400590-73400609 Msa1075230:intron 15.0%
!!! TTAGTTATAGCATATTTTTT+TGG - chr7_2:73400727-73400746 Msa1075230:intron 15.0%
!!! CCTTATTTATATAAAATGAA+AGG + chr7_2:73399710-73399729 None:intergenic 15.0%
!!! CCTTTCATTTTATATAAATA+AGG - chr7_2:73399707-73399726 Msa1075230:three_prime_UTR 15.0%
!!! CAAATTTTCATTAATTTTGT+AGG + chr7_2:73399904-73399923 None:intergenic 15.0%
!! CTACAAAATTAATGAAAATT+TGG - chr7_2:73399902-73399921 Msa1075230:CDS 15.0%
!!! TATGTTTTATCTTGAAATTT+TGG - chr7_2:73399936-73399955 Msa1075230:CDS 15.0%
!!! TATGTTTTATCTTGAAATTT+TGG - chr7_2:73399936-73399955 Msa1075230:CDS 15.0%
!!! AGTTAACATTTTTTTTTTGT+TGG - chr7_2:73400590-73400609 Msa1075230:intron 15.0%
!!! TTAGTTATAGCATATTTTTT+TGG - chr7_2:73400727-73400746 Msa1075230:intron 15.0%
!! TACCTTATCAATCAATTATT+TGG + chr7_2:73399547-73399566 None:intergenic 20.0%
!! CTTCAAAAATTTAGAAGTTT+AGG - chr7_2:73400219-73400238 Msa1075230:intron 20.0%
!! ACAAAACTGCAAATATTTAT+AGG - chr7_2:73400358-73400377 Msa1075230:intron 20.0%
!! CAAAACTGCAAATATTTATA+GGG - chr7_2:73400359-73400378 Msa1075230:intron 20.0%
!!! TATAGGGTTAATTAAGTTTT+TGG + chr7_2:73400386-73400405 None:intergenic 20.0%
!! ATTATTTACCAAAAAGATTG+CGG + chr7_2:73400416-73400435 None:intergenic 20.0%
!! ATCAATAAAGTAACATAAGA+AGG - chr7_2:73401136-73401155 Msa1075230:intron 20.0%
!! TACCTTATCAATCAATTATT+TGG + chr7_2:73399547-73399566 None:intergenic 20.0%
!! CTTCAAAAATTTAGAAGTTT+AGG - chr7_2:73400219-73400238 Msa1075230:intron 20.0%
!! ACAAAACTGCAAATATTTAT+AGG - chr7_2:73400358-73400377 Msa1075230:intron 20.0%
!! CAAAACTGCAAATATTTATA+GGG - chr7_2:73400359-73400378 Msa1075230:intron 20.0%
!!! TATAGGGTTAATTAAGTTTT+TGG + chr7_2:73400386-73400405 None:intergenic 20.0%
!! ATTATTTACCAAAAAGATTG+CGG + chr7_2:73400416-73400435 None:intergenic 20.0%
!! ATCAATAAAGTAACATAAGA+AGG - chr7_2:73401136-73401155 Msa1075230:intron 20.0%
! AAAGAAAAGAAACTCATAAG+AGG - chr7_2:73399521-73399540 Msa1075230:three_prime_UTR 25.0%
! AGATTGCGGAATTATTTATA+GGG + chr7_2:73400402-73400421 None:intergenic 25.0%
! AAGATTGCGGAATTATTTAT+AGG + chr7_2:73400403-73400422 None:intergenic 25.0%
!! AAATAATTCCGCAATCTTTT+TGG - chr7_2:73400405-73400424 Msa1075230:intron 25.0%
!! GTTTTGTCACTAAAATTATG+AGG + chr7_2:73400514-73400533 None:intergenic 25.0%
! AAAGAAAAGAAACTCATAAG+AGG - chr7_2:73399521-73399540 Msa1075230:three_prime_UTR 25.0%
! AGATTGCGGAATTATTTATA+GGG + chr7_2:73400402-73400421 None:intergenic 25.0%
! AAGATTGCGGAATTATTTAT+AGG + chr7_2:73400403-73400422 None:intergenic 25.0%
!! AAATAATTCCGCAATCTTTT+TGG - chr7_2:73400405-73400424 Msa1075230:intron 25.0%
!! GTTTTGTCACTAAAATTATG+AGG + chr7_2:73400514-73400533 None:intergenic 25.0%
! TGAGTTTCTTTTCTTTTTCC+AGG + chr7_2:73399517-73399536 None:intergenic 30.0%
GGCCAAATAATTGATTGATA+AGG - chr7_2:73399542-73399561 Msa1075230:three_prime_UTR 30.0%
AAAACCAAACCAAAAATGCA+AGG - chr7_2:73399575-73399594 Msa1075230:three_prime_UTR 30.0%
ACAAAACTGCAGATATTTAC+AGG + chr7_2:73399737-73399756 None:intergenic 30.0%
! ACACTAACGGAAAATTTTGT+AGG + chr7_2:73400298-73400317 None:intergenic 30.0%
ACAGGGAATAAAAACACTAA+CGG + chr7_2:73399810-73399829 None:intergenic 30.0%
! ACACTAACGGAAAATTTTGT+AGG - chr7_2:73400298-73400317 Msa1075230:intron 30.0%
! CACTAACGGAAAATTTTGTA+GGG - chr7_2:73400299-73400318 Msa1075230:intron 30.0%
AACCCAAAAGAAAGAAGAAA+GGG - chr7_2:73400923-73400942 Msa1075230:intron 30.0%
! AACCCTTTCTTCTTTCTTTT+GGG + chr7_2:73400928-73400947 None:intergenic 30.0%
! TAACCCTTTCTTCTTTCTTT+TGG + chr7_2:73400929-73400948 None:intergenic 30.0%
!! GTGTATGGTTGTTTTCATAT+CGG - chr7_2:73401178-73401197 Msa1075230:CDS 30.0%
!! TGTATGGTTGTTTTCATATC+GGG - chr7_2:73401179-73401198 Msa1075230:CDS 30.0%
! TGAGTTTCTTTTCTTTTTCC+AGG + chr7_2:73399517-73399536 None:intergenic 30.0%
GGCCAAATAATTGATTGATA+AGG - chr7_2:73399542-73399561 Msa1075230:three_prime_UTR 30.0%
AAAACCAAACCAAAAATGCA+AGG - chr7_2:73399575-73399594 Msa1075230:three_prime_UTR 30.0%
ACAAAACTGCAGATATTTAC+AGG + chr7_2:73399737-73399756 None:intergenic 30.0%
! ACACTAACGGAAAATTTTGT+AGG + chr7_2:73400298-73400317 None:intergenic 30.0%
ACAGGGAATAAAAACACTAA+CGG + chr7_2:73399810-73399829 None:intergenic 30.0%
! ACACTAACGGAAAATTTTGT+AGG - chr7_2:73400298-73400317 Msa1075230:intron 30.0%
! CACTAACGGAAAATTTTGTA+GGG - chr7_2:73400299-73400318 Msa1075230:intron 30.0%
AACCCAAAAGAAAGAAGAAA+GGG - chr7_2:73400923-73400942 Msa1075230:intron 30.0%
! AACCCTTTCTTCTTTCTTTT+GGG + chr7_2:73400928-73400947 None:intergenic 30.0%
! TAACCCTTTCTTCTTTCTTT+TGG + chr7_2:73400929-73400948 None:intergenic 30.0%
!! GTGTATGGTTGTTTTCATAT+CGG - chr7_2:73401178-73401197 Msa1075230:CDS 30.0%
!! TGTATGGTTGTTTTCATATC+GGG - chr7_2:73401179-73401198 Msa1075230:CDS 30.0%
AAAAACAGGAGAGTCCATTA+AGG - chr7_2:73399607-73399626 Msa1075230:three_prime_UTR 35.0%
AATTACCTTCTCTTGAACAG+TGG + chr7_2:73399687-73399706 None:intergenic 35.0%
AGGGACTAAAAACACTAACA+GGG - chr7_2:73400268-73400287 Msa1075230:intron 35.0%
ACAGGGACTAAAAACACTAA+CGG - chr7_2:73400266-73400285 Msa1075230:intron 35.0%
CACGAGGCTAATTATTATTG+AGG - chr7_2:73400542-73400561 Msa1075230:intron 35.0%
CAACCCAAAAGAAAGAAGAA+AGG - chr7_2:73400922-73400941 Msa1075230:intron 35.0%
TATGGAACTAGTGGTACTTA+CGG - chr7_2:73401095-73401114 Msa1075230:intron 35.0%
AGAACAATCCACGTAAAAGT+AGG + chr7_2:73401261-73401280 None:intergenic 35.0%
AAAAACAGGAGAGTCCATTA+AGG - chr7_2:73399607-73399626 Msa1075230:three_prime_UTR 35.0%
AATTACCTTCTCTTGAACAG+TGG + chr7_2:73399687-73399706 None:intergenic 35.0%
AGGGACTAAAAACACTAACA+GGG - chr7_2:73400268-73400287 Msa1075230:intron 35.0%
ACAGGGACTAAAAACACTAA+CGG - chr7_2:73400266-73400285 Msa1075230:intron 35.0%
CACGAGGCTAATTATTATTG+AGG - chr7_2:73400542-73400561 Msa1075230:intron 35.0%
CAACCCAAAAGAAAGAAGAA+AGG - chr7_2:73400922-73400941 Msa1075230:intron 35.0%
TATGGAACTAGTGGTACTTA+CGG - chr7_2:73401095-73401114 Msa1075230:intron 35.0%
AGAACAATCCACGTAAAAGT+AGG + chr7_2:73401261-73401280 None:intergenic 35.0%
ACCAAACCAAAAATGCAAGG+AGG - chr7_2:73399578-73399597 Msa1075230:three_prime_UTR 40.0%
!!! TCCTCCTTGCATTTTTGGTT+TGG + chr7_2:73399582-73399601 None:intergenic 40.0%
! TTTGCTCCTCCTTGCATTTT+TGG + chr7_2:73399587-73399606 None:intergenic 40.0%
CAAGGAGGAGCAAAAAAAAC+AGG - chr7_2:73399593-73399612 Msa1075230:three_prime_UTR 40.0%
CAGGGACTAAAAACACTAAC+AGG - chr7_2:73400267-73400286 Msa1075230:intron 40.0%
TCAACAACTCTTCACTCATG+TGG - chr7_2:73400565-73400584 Msa1075230:intron 40.0%
ATCACATGATCCCATCCAAA+AGG - chr7_2:73400893-73400912 Msa1075230:intron 40.0%
! TCTCTTTTGCCATGAGTTTG+TGG - chr7_2:73401230-73401249 Msa1075230:CDS 40.0%
TAGGAACTTCCACAAACTCA+TGG + chr7_2:73401242-73401261 None:intergenic 40.0%
!! TGGAAGTTCCTACTTTTACG+TGG - chr7_2:73401250-73401269 Msa1075230:exon 40.0%
ACCAAACCAAAAATGCAAGG+AGG - chr7_2:73399578-73399597 Msa1075230:three_prime_UTR 40.0%
!!! TCCTCCTTGCATTTTTGGTT+TGG + chr7_2:73399582-73399601 None:intergenic 40.0%
! TTTGCTCCTCCTTGCATTTT+TGG + chr7_2:73399587-73399606 None:intergenic 40.0%
CAAGGAGGAGCAAAAAAAAC+AGG - chr7_2:73399593-73399612 Msa1075230:three_prime_UTR 40.0%
CAGGGACTAAAAACACTAAC+AGG - chr7_2:73400267-73400286 Msa1075230:intron 40.0%
TCAACAACTCTTCACTCATG+TGG - chr7_2:73400565-73400584 Msa1075230:intron 40.0%
ATCACATGATCCCATCCAAA+AGG - chr7_2:73400893-73400912 Msa1075230:intron 40.0%
! TCTCTTTTGCCATGAGTTTG+TGG - chr7_2:73401230-73401249 Msa1075230:CDS 40.0%
TAGGAACTTCCACAAACTCA+TGG + chr7_2:73401242-73401261 None:intergenic 40.0%
!! TGGAAGTTCCTACTTTTACG+TGG - chr7_2:73401250-73401269 Msa1075230:exon 40.0%
! TTTGGCTGAAGCACCAATGT+TGG + chr7_2:73399642-73399661 None:intergenic 45.0%
! ATTGGTGCTTCAGCCAAATC+TGG - chr7_2:73399644-73399663 Msa1075230:three_prime_UTR 45.0%
! GGTCTTTTCCATGCCAGATT+TGG + chr7_2:73399660-73399679 None:intergenic 45.0%
ATCTGGCATGGAAAAGACCA+AGG - chr7_2:73399661-73399680 Msa1075230:three_prime_UTR 45.0%
GACAAAACTCTTTGCTCACG+AGG - chr7_2:73400526-73400545 Msa1075230:intron 45.0%
TGATCCCATCCAAAAGGAGA+TGG - chr7_2:73400899-73400918 Msa1075230:intron 45.0%
! GTTGCCATCTCCTTTTGGAT+GGG + chr7_2:73400906-73400925 None:intergenic 45.0%
!!! TTTGGGTTGCCATCTCCTTT+TGG + chr7_2:73400911-73400930 None:intergenic 45.0%
CCTCTTTATCAAGCTCAGTC+TGG + chr7_2:73400953-73400972 None:intergenic 45.0%
CCAGACTGAGCTTGATAAAG+AGG - chr7_2:73400950-73400969 Msa1075230:intron 45.0%
GACTGAGCTTGATAAAGAGG+CGG - chr7_2:73400953-73400972 Msa1075230:intron 45.0%
CTCAAACGAGGAGTCAGTTT+GGG - chr7_2:73401057-73401076 Msa1075230:intron 45.0%
GTCACATGGTATGGAACTAG+TGG - chr7_2:73401086-73401105 Msa1075230:intron 45.0%
CAACCATACACACTACGCTA+GGG + chr7_2:73401169-73401188 None:intergenic 45.0%
ACAACCATACACACTACGCT+AGG + chr7_2:73401170-73401189 None:intergenic 45.0%
! TTTGGCTGAAGCACCAATGT+TGG + chr7_2:73399642-73399661 None:intergenic 45.0%
! ATTGGTGCTTCAGCCAAATC+TGG - chr7_2:73399644-73399663 Msa1075230:three_prime_UTR 45.0%
! GGTCTTTTCCATGCCAGATT+TGG + chr7_2:73399660-73399679 None:intergenic 45.0%
ATCTGGCATGGAAAAGACCA+AGG - chr7_2:73399661-73399680 Msa1075230:three_prime_UTR 45.0%
GACAAAACTCTTTGCTCACG+AGG - chr7_2:73400526-73400545 Msa1075230:intron 45.0%
TGATCCCATCCAAAAGGAGA+TGG - chr7_2:73400899-73400918 Msa1075230:intron 45.0%
! GTTGCCATCTCCTTTTGGAT+GGG + chr7_2:73400906-73400925 None:intergenic 45.0%
!!! TTTGGGTTGCCATCTCCTTT+TGG + chr7_2:73400911-73400930 None:intergenic 45.0%
CCTCTTTATCAAGCTCAGTC+TGG + chr7_2:73400953-73400972 None:intergenic 45.0%
CCAGACTGAGCTTGATAAAG+AGG - chr7_2:73400950-73400969 Msa1075230:intron 45.0%
GACTGAGCTTGATAAAGAGG+CGG - chr7_2:73400953-73400972 Msa1075230:intron 45.0%
CTCAAACGAGGAGTCAGTTT+GGG - chr7_2:73401057-73401076 Msa1075230:intron 45.0%
GTCACATGGTATGGAACTAG+TGG - chr7_2:73401086-73401105 Msa1075230:intron 45.0%
CAACCATACACACTACGCTA+GGG + chr7_2:73401169-73401188 None:intergenic 45.0%
ACAACCATACACACTACGCT+AGG + chr7_2:73401170-73401189 None:intergenic 45.0%
GTTGGCAGCTGTCTCCTTAA+TGG + chr7_2:73399624-73399643 None:intergenic 50.0%
AAGGAGACAGCTGCCAACAT+TGG - chr7_2:73399626-73399645 Msa1075230:three_prime_UTR 50.0%
TGCTTCAGCCAAATCTGGCA+TGG - chr7_2:73399649-73399668 Msa1075230:three_prime_UTR 50.0%
CTTCTCTTGAACAGTGGCCT+TGG + chr7_2:73399681-73399700 None:intergenic 50.0%
CAAGGCCACTGTTCAAGAGA+AGG - chr7_2:73399679-73399698 Msa1075230:three_prime_UTR 50.0%
! GGTTGCCATCTCCTTTTGGA+TGG + chr7_2:73400907-73400926 None:intergenic 50.0%
GCTCAAACGAGGAGTCAGTT+TGG - chr7_2:73401056-73401075 Msa1075230:intron 50.0%
AGTTTGGGCTGTGAGTCACA+TGG - chr7_2:73401072-73401091 Msa1075230:intron 50.0%
GGAACTAGTGGTACTTACGG+TGG - chr7_2:73401098-73401117 Msa1075230:intron 50.0%
GTACCCTAGCGTAGTGTGTA+TGG - chr7_2:73401163-73401182 Msa1075230:CDS 50.0%
GTTGGCAGCTGTCTCCTTAA+TGG + chr7_2:73399624-73399643 None:intergenic 50.0%
AAGGAGACAGCTGCCAACAT+TGG - chr7_2:73399626-73399645 Msa1075230:three_prime_UTR 50.0%
TGCTTCAGCCAAATCTGGCA+TGG - chr7_2:73399649-73399668 Msa1075230:three_prime_UTR 50.0%
CTTCTCTTGAACAGTGGCCT+TGG + chr7_2:73399681-73399700 None:intergenic 50.0%
CAAGGCCACTGTTCAAGAGA+AGG - chr7_2:73399679-73399698 Msa1075230:three_prime_UTR 50.0%
! GGTTGCCATCTCCTTTTGGA+TGG + chr7_2:73400907-73400926 None:intergenic 50.0%
GCTCAAACGAGGAGTCAGTT+TGG - chr7_2:73401056-73401075 Msa1075230:intron 50.0%
AGTTTGGGCTGTGAGTCACA+TGG - chr7_2:73401072-73401091 Msa1075230:intron 50.0%
GGAACTAGTGGTACTTACGG+TGG - chr7_2:73401098-73401117 Msa1075230:intron 50.0%
GTACCCTAGCGTAGTGTGTA+TGG - chr7_2:73401163-73401182 Msa1075230:CDS 50.0%
GGGCTGTGAGTCACATGGTA+TGG - chr7_2:73401077-73401096 Msa1075230:intron 55.0%
GGGCTGTGAGTCACATGGTA+TGG - chr7_2:73401077-73401096 Msa1075230:intron 55.0%
ACCACACCACGGGAACTGGT+GGG - chr7_2:73401030-73401049 Msa1075230:intron 60.0%
ACCACACCACGGGAACTGGT+GGG - chr7_2:73401030-73401049 Msa1075230:intron 60.0%
CACAACGCTGCAGCCACCAC+CGG - chr7_2:73400984-73401003 Msa1075230:intron 65.0%
ACAACGCTGCAGCCACCACC+GGG - chr7_2:73400985-73401004 Msa1075230:intron 65.0%
AGCCACCACCGGGCACCAAT+TGG - chr7_2:73400995-73401014 Msa1075230:intron 65.0%
GCCACCACCGGGCACCAATT+GGG - chr7_2:73400996-73401015 Msa1075230:intron 65.0%
CCACCACCGGGCACCAATTG+GGG - chr7_2:73400997-73401016 Msa1075230:intron 65.0%
ACCGGGCACCAATTGGGGCA+GGG - chr7_2:73401002-73401021 Msa1075230:intron 65.0%
! ACCCTGCCCCAATTGGTGCC+CGG + chr7_2:73401006-73401025 None:intergenic 65.0%
GGTGTCCACCCTGCCCCAAT+TGG + chr7_2:73401013-73401032 None:intergenic 65.0%
GCAGGGTGGACACCACACCA+CGG - chr7_2:73401019-73401038 Msa1075230:intron 65.0%
CAGGGTGGACACCACACCAC+GGG - chr7_2:73401020-73401039 Msa1075230:intron 65.0%
GGACACCACACCACGGGAAC+TGG - chr7_2:73401026-73401045 Msa1075230:intron 65.0%
CACCACACCACGGGAACTGG+TGG - chr7_2:73401029-73401048 Msa1075230:intron 65.0%
CCACACCACGGGAACTGGTG+GGG - chr7_2:73401031-73401050 Msa1075230:intron 65.0%
CTGGTGGGGCTGCTCAAACG+AGG - chr7_2:73401045-73401064 Msa1075230:intron 65.0%
CACAACGCTGCAGCCACCAC+CGG - chr7_2:73400984-73401003 Msa1075230:intron 65.0%
ACAACGCTGCAGCCACCACC+GGG - chr7_2:73400985-73401004 Msa1075230:intron 65.0%
AGCCACCACCGGGCACCAAT+TGG - chr7_2:73400995-73401014 Msa1075230:intron 65.0%
GCCACCACCGGGCACCAATT+GGG - chr7_2:73400996-73401015 Msa1075230:intron 65.0%
CCACCACCGGGCACCAATTG+GGG - chr7_2:73400997-73401016 Msa1075230:intron 65.0%
ACCGGGCACCAATTGGGGCA+GGG - chr7_2:73401002-73401021 Msa1075230:intron 65.0%
! ACCCTGCCCCAATTGGTGCC+CGG + chr7_2:73401006-73401025 None:intergenic 65.0%
GGTGTCCACCCTGCCCCAAT+TGG + chr7_2:73401013-73401032 None:intergenic 65.0%
GCAGGGTGGACACCACACCA+CGG - chr7_2:73401019-73401038 Msa1075230:intron 65.0%
CAGGGTGGACACCACACCAC+GGG - chr7_2:73401020-73401039 Msa1075230:intron 65.0%
GGACACCACACCACGGGAAC+TGG - chr7_2:73401026-73401045 Msa1075230:intron 65.0%
CACCACACCACGGGAACTGG+TGG - chr7_2:73401029-73401048 Msa1075230:intron 65.0%
CCACACCACGGGAACTGGTG+GGG - chr7_2:73401031-73401050 Msa1075230:intron 65.0%
CTGGTGGGGCTGCTCAAACG+AGG - chr7_2:73401045-73401064 Msa1075230:intron 65.0%
! CCCCAATTGGTGCCCGGTGG+TGG + chr7_2:73401000-73401019 None:intergenic 70.0%
! CTGCCCCAATTGGTGCCCGG+TGG + chr7_2:73401003-73401022 None:intergenic 70.0%
CACCGGGCACCAATTGGGGC+AGG - chr7_2:73401001-73401020 Msa1075230:intron 70.0%
GGGCACCAATTGGGGCAGGG+TGG - chr7_2:73401005-73401024 Msa1075230:intron 70.0%
CCCCACCAGTTCCCGTGGTG+TGG + chr7_2:73401034-73401053 None:intergenic 70.0%
AGCAGCCCCACCAGTTCCCG+TGG + chr7_2:73401039-73401058 None:intergenic 70.0%
! CCCCAATTGGTGCCCGGTGG+TGG + chr7_2:73401000-73401019 None:intergenic 70.0%
! CTGCCCCAATTGGTGCCCGG+TGG + chr7_2:73401003-73401022 None:intergenic 70.0%
CACCGGGCACCAATTGGGGC+AGG - chr7_2:73401001-73401020 Msa1075230:intron 70.0%
GGGCACCAATTGGGGCAGGG+TGG - chr7_2:73401005-73401024 Msa1075230:intron 70.0%
CCCCACCAGTTCCCGTGGTG+TGG + chr7_2:73401034-73401053 None:intergenic 70.0%
AGCAGCCCCACCAGTTCCCG+TGG + chr7_2:73401039-73401058 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 73399505 73401335 73399505 ID=Msa1075230;Name=Msa1075230
chr7_2 mRNA 73399505 73401335 73399505 ID=Msa1075230-mRNA-1;Parent=Msa1075230;Name=Msa1075230-mRNA-1;_AED=0.01;_eAED=0.01;_QI=85|1|1|1|1|1|2|250|105
chr7_2 exon 73399505 73399961 73399505 ID=Msa1075230-mRNA-1:exon:17099;Parent=Msa1075230-mRNA-1
chr7_2 exon 73401140 73401335 73401140 ID=Msa1075230-mRNA-1:exon:17098;Parent=Msa1075230-mRNA-1
chr7_2 five_prime_UTR 73401251 73401335 73401251 ID=Msa1075230-mRNA-1:five_prime_utr;Parent=Msa1075230-mRNA-1
chr7_2 CDS 73401140 73401250 73401140 ID=Msa1075230-mRNA-1:cds;Parent=Msa1075230-mRNA-1
chr7_2 CDS 73399755 73399961 73399755 ID=Msa1075230-mRNA-1:cds;Parent=Msa1075230-mRNA-1
chr7_2 three_prime_UTR 73399505 73399754 73399505 ID=Msa1075230-mRNA-1:three_prime_utr;Parent=Msa1075230-mRNA-1
Gene Sequence

>Msa1075230

ATGCAAGGAGGAGCAAAAAAAACAGGAGAGTCCATTAAGGAGACAGCTGCCAACATTGGTGCTTCAGCCAAATCTGGCATGGAAAAGACCAAGGCCACTGTTCAAGAGAAGACAGAGAAGATGACATCACATGATCCCATCCAAAAGGAGATGGCAACCCAAAAGAAAGAAGAAAGGGTTAACCAGACTGAGCTTGATAAAGAGGCGGCGCGTGAACACAACGCTGCAGCCACCACCGGGCACCAATTGGGGCAGGGTGGACACCACACCACGGGAACTGGTGGGGCTGCTCAAACGAGGAGTCAGTTTGGGCTGTGA
Protein sequence

>Msa1075230

MQGGAKKTGESIKETAANIGASAKSGMEKTKATVQEKTEKMTSHDPIQKEMATQKKEERVNQTELDKEAAREHNAAATTGHQLGQGGHHTTGTGGAAQTRSQFGL*