AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1116150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1116150 MtrunA17_Chr7g0258621 94.286 105 6 0 1 105 1 105 2.53e-57 172
Msa1116150 MtrunA17_Chr7g0258631 92.079 101 8 0 1 101 1 101 2.46e-51 157
Msa1116150 MtrunA17_Chr7g0258641 83.562 73 12 0 4 76 3 75 1.65e-35 119
Msa1116150 MtrunA17_Chr1g0175211 67.500 80 23 1 5 81 4 83 1.93e-30 106
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1116150 AT5G06760.1 64.179 67 24 0 10 76 2 68 3.00e-24 90.5

Find 52 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACCCTTTCTTCTTTCTTT+TGG 0.103265 7_3:+63730402 None:intergenic
TACCTTATCAATCAATTATT+TGG 0.132508 7_3:+63731779 None:intergenic
GTTGGCAGCTGTCTCCTTAA+TGG 0.241135 7_3:+63731702 None:intergenic
CTTCTCTTGAACAGTGGCCT+TGG 0.334474 7_3:+63731645 None:intergenic
AGCCACCACCGGGCACCAAT+TGG 0.345146 7_3:-63730333 Msa1116150:CDS
GCCACCACCGGGCACCAATT+GGG 0.352332 7_3:-63730332 Msa1116150:CDS
GGACACCACACCACGGGAAC+TGG 0.359178 7_3:-63730302 Msa1116150:CDS
GCTCAAACGAGGAGTCAGTT+TGG 0.390088 7_3:-63730272 Msa1116150:CDS
CTCAAACGAGGAGTCAGTTT+GGG 0.391807 7_3:-63730271 Msa1116150:CDS
ATTGGTGCTTCAGCCAAATC+TGG 0.410427 7_3:-63731679 Msa1116150:CDS
CCTCTTTATCAAGCTCAGTC+TGG 0.425971 7_3:+63730378 None:intergenic
GGTGTCCACCCTGCCCCAAT+TGG 0.432127 7_3:+63730318 None:intergenic
CCCCAATTGGTGCCCGGTGG+TGG 0.440868 7_3:+63730331 None:intergenic
GTACCCTAGCGTAGTGTGTA+TGG 0.460570 7_3:-63730165 Msa1116150:three_prime_UTR
GGCCAAATAATTGATTGATA+AGG 0.475678 7_3:-63731781 Msa1116150:five_prime_UTR
CACCACACCACGGGAACTGG+TGG 0.486869 7_3:-63730299 Msa1116150:CDS
CAGGGTGGACACCACACCAC+GGG 0.488696 7_3:-63730308 Msa1116150:CDS
CCAGACTGAGCTTGATAAAG+AGG 0.488849 7_3:-63730378 Msa1116150:CDS
AAAGAAAAGAAACTCATAAG+AGG 0.491810 7_3:-63731802 Msa1116150:five_prime_UTR
ATCGATAAAGTAACATAAGA+AGG 0.501589 7_3:-63730192 Msa1116150:three_prime_UTR
GCATGTGGTCTTCAACATCC+TGG 0.506941 7_3:-63731827 None:intergenic
ATCACATGATCCCTTGCAAA+AGG 0.516543 7_3:-63730435 Msa1116150:CDS
CCCCACCAGTTCCCGTGGTG+TGG 0.523168 7_3:+63730297 None:intergenic
TTTGGCTGAAGCACCAATGT+TGG 0.533030 7_3:+63731684 None:intergenic
AACCCAAAAGAAAGAAGAAA+GGG 0.533989 7_3:-63730405 Msa1116150:CDS
CACAACGCTGCAGCCACCAC+CGG 0.534674 7_3:-63730344 Msa1116150:CDS
GGGCTGTGAGTCACATGGTA+TGG 0.542076 7_3:-63730251 Msa1116150:exon
AGCAGCCCCACCAGTTCCCG+TGG 0.542543 7_3:+63730292 None:intergenic
CCACACCACGGGAACTGGTG+GGG 0.542809 7_3:-63730297 Msa1116150:CDS
ACAACCATACACACTACGCT+AGG 0.545992 7_3:+63730161 None:intergenic
CAACCCAAAAGAAAGAAGAA+AGG 0.548482 7_3:-63730406 Msa1116150:CDS
CCACCACCGGGCACCAATTG+GGG 0.551603 7_3:-63730331 Msa1116150:CDS
AGAACAATCCACGTAAAAGT+AGG 0.562079 7_3:+63730070 None:intergenic
ACCACACCACGGGAACTGGT+GGG 0.566675 7_3:-63730298 Msa1116150:CDS
TGATCCCTTGCAAAAGGAGA+TGG 0.570165 7_3:-63730429 Msa1116150:CDS
AAGGAGACAGCTGCCAACAT+TGG 0.570685 7_3:-63731697 Msa1116150:CDS
ACAACGCTGCAGCCACCACC+GGG 0.572456 7_3:-63730343 Msa1116150:CDS
TATGGAACTAGTGGTACTTA+CGG 0.577593 7_3:-63730233 Msa1116150:three_prime_UTR
TGCTTCAGCCAAATCTGGCA+TGG 0.578401 7_3:-63731674 Msa1116150:CDS
CAAGGCCACTGTTCAAGAGA+AGG 0.599228 7_3:-63731644 Msa1116150:intron
AATTACCTTCTCTTGAACAG+TGG 0.606946 7_3:+63731639 None:intergenic
CTGGTGGGGCTGCTCAAACG+AGG 0.620605 7_3:-63730283 Msa1116150:CDS
GCAGGGTGGACACCACACCA+CGG 0.630908 7_3:-63730309 Msa1116150:CDS
GTCACATGGTATGGAACTAG+TGG 0.632095 7_3:-63730242 Msa1116150:three_prime_UTR
ACCGGGCACCAATTGGGGCA+GGG 0.632230 7_3:-63730326 Msa1116150:CDS
CAACCATACACACTACGCTA+GGG 0.636498 7_3:+63730162 None:intergenic
TAGGAACTTCCACAAACTCA+TGG 0.649815 7_3:+63730089 None:intergenic
ATCTGGCATGGAAAAGACCA+AGG 0.660335 7_3:-63731662 Msa1116150:CDS
GGGCACCAATTGGGGCAGGG+TGG 0.662871 7_3:-63730323 Msa1116150:CDS
AGTTTGGGCTGTGAGTCACA+TGG 0.670533 7_3:-63730256 Msa1116150:exon
CTGCCCCAATTGGTGCCCGG+TGG 0.696266 7_3:+63730328 None:intergenic
GGAACTAGTGGTACTTACGG+TGG 0.732249 7_3:-63730230 Msa1116150:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTCATTTTATATAAATAA+GGG - chr7_3:63730218-63730237 Msa1116150:three_prime_UTR 10.0%
!!! AAATGTGATTTATTTTTATA+AGG + chr7_3:63730834-63730853 None:intergenic 10.0%
!!! AAACAAATTTTAATTTAACA+GGG + chr7_3:63730774-63730793 None:intergenic 10.0%
!!! TAAACAAATTTTAATTTAAC+AGG + chr7_3:63730773-63730792 None:intergenic 10.0%
!!! AAATTTTCATTAATTTTGTA+GGG + chr7_3:63730428-63730447 None:intergenic 10.0%
!!! AATTTGAAATTTTTTTTGTA+GGG + chr7_3:63730607-63730626 None:intergenic 10.0%
!!! TAATTTGAAATTTTTTTTGT+AGG + chr7_3:63730608-63730627 None:intergenic 10.0%
!!! TAAACAAATTTTAATTTAAC+AGG - chr7_3:63730773-63730792 Msa1116150:intron 10.0%
!!! AAACAAATTTTAATTTAACA+GGG - chr7_3:63730774-63730793 Msa1116150:intron 10.0%
!!! AAAATGTGATTTATTTTTAT+AGG - chr7_3:63730833-63730852 Msa1116150:intron 10.0%
!!! AAATGTGATTTATTTTTATA+GGG - chr7_3:63730834-63730853 Msa1116150:intron 10.0%
!!! CTTTCATTTTATATAAATAA+GGG - chr7_3:63730218-63730237 Msa1116150:three_prime_UTR 10.0%
!!! AAATGTGATTTATTTTTATA+AGG + chr7_3:63730834-63730853 None:intergenic 10.0%
!!! AAACAAATTTTAATTTAACA+GGG + chr7_3:63730774-63730793 None:intergenic 10.0%
!!! TAAACAAATTTTAATTTAAC+AGG + chr7_3:63730773-63730792 None:intergenic 10.0%
!!! AAATTTTCATTAATTTTGTA+GGG + chr7_3:63730428-63730447 None:intergenic 10.0%
!!! AATTTGAAATTTTTTTTGTA+GGG + chr7_3:63730607-63730626 None:intergenic 10.0%
!!! TAATTTGAAATTTTTTTTGT+AGG + chr7_3:63730608-63730627 None:intergenic 10.0%
!!! TAAACAAATTTTAATTTAAC+AGG - chr7_3:63730773-63730792 Msa1116150:intron 10.0%
!!! AAACAAATTTTAATTTAACA+GGG - chr7_3:63730774-63730793 Msa1116150:intron 10.0%
!!! AAAATGTGATTTATTTTTAT+AGG - chr7_3:63730833-63730852 Msa1116150:intron 10.0%
!!! AAATGTGATTTATTTTTATA+GGG - chr7_3:63730834-63730853 Msa1116150:intron 10.0%
!!! CCTTATTTATATAAAATGAA+AGG + chr7_3:63730220-63730239 None:intergenic 15.0%
!!! CCTTTCATTTTATATAAATA+AGG - chr7_3:63730217-63730236 Msa1116150:three_prime_UTR 15.0%
!!! CAAATTTTCATTAATTTTGT+AGG + chr7_3:63730429-63730448 None:intergenic 15.0%
!! CTACAAAATTAATGAAAATT+TGG - chr7_3:63730427-63730446 Msa1116150:CDS 15.0%
!!! TATGTTTTATCTTGAAATTT+TGG - chr7_3:63730461-63730480 Msa1116150:intron 15.0%
!!! TATGTTTTATCTTGAAATTT+TGG - chr7_3:63730461-63730480 Msa1116150:intron 15.0%
!!! TAGTTAACATTTTTTTTTGT+TGG - chr7_3:63731095-63731114 Msa1116150:intron 15.0%
!!! TTAGTTATAGCATATTTTTT+TGG - chr7_3:63731232-63731251 Msa1116150:intron 15.0%
!!! CCTTATTTATATAAAATGAA+AGG + chr7_3:63730220-63730239 None:intergenic 15.0%
!!! CCTTTCATTTTATATAAATA+AGG - chr7_3:63730217-63730236 Msa1116150:three_prime_UTR 15.0%
!!! CAAATTTTCATTAATTTTGT+AGG + chr7_3:63730429-63730448 None:intergenic 15.0%
!! CTACAAAATTAATGAAAATT+TGG - chr7_3:63730427-63730446 Msa1116150:CDS 15.0%
!!! TATGTTTTATCTTGAAATTT+TGG - chr7_3:63730461-63730480 Msa1116150:intron 15.0%
!!! TATGTTTTATCTTGAAATTT+TGG - chr7_3:63730461-63730480 Msa1116150:intron 15.0%
!!! TAGTTAACATTTTTTTTTGT+TGG - chr7_3:63731095-63731114 Msa1116150:intron 15.0%
!!! TTAGTTATAGCATATTTTTT+TGG - chr7_3:63731232-63731251 Msa1116150:intron 15.0%
!! TACCTTATCAATCAATTATT+TGG + chr7_3:63730057-63730076 None:intergenic 20.0%
!!! ATAAGGGTTAATTAAGTTTT+TGG - chr7_3:63730234-63730253 Msa1116150:three_prime_UTR 20.0%
!! CTTCAAAAATTTAGAAGTTT+AGG - chr7_3:63730744-63730763 Msa1116150:intron 20.0%
!! ACAAAACTGCAAATATTTAT+AGG - chr7_3:63730864-63730883 Msa1116150:intron 20.0%
!! CAAAACTGCAAATATTTATA+GGG - chr7_3:63730865-63730884 Msa1116150:intron 20.0%
!!! TATAGGGTTAATTAAGTTTT+TGG + chr7_3:63730892-63730911 None:intergenic 20.0%
!! ATTATTTACCAAAAAGATTG+CGG + chr7_3:63730922-63730941 None:intergenic 20.0%
!! TACCTTATCAATCAATTATT+TGG + chr7_3:63730057-63730076 None:intergenic 20.0%
!!! ATAAGGGTTAATTAAGTTTT+TGG - chr7_3:63730234-63730253 Msa1116150:three_prime_UTR 20.0%
!! CTTCAAAAATTTAGAAGTTT+AGG - chr7_3:63730744-63730763 Msa1116150:intron 20.0%
!! ACAAAACTGCAAATATTTAT+AGG - chr7_3:63730864-63730883 Msa1116150:intron 20.0%
!! CAAAACTGCAAATATTTATA+GGG - chr7_3:63730865-63730884 Msa1116150:intron 20.0%
!!! TATAGGGTTAATTAAGTTTT+TGG + chr7_3:63730892-63730911 None:intergenic 20.0%
!! ATTATTTACCAAAAAGATTG+CGG + chr7_3:63730922-63730941 None:intergenic 20.0%
! AAAGAAAAGAAACTCATAAG+AGG - chr7_3:63730031-63730050 Msa1116150:three_prime_UTR 25.0%
! AGATTGCGGAATTATTTATA+GGG + chr7_3:63730908-63730927 None:intergenic 25.0%
! AAGATTGCGGAATTATTTAT+AGG + chr7_3:63730909-63730928 None:intergenic 25.0%
!! AAATAATTCCGCAATCTTTT+TGG - chr7_3:63730911-63730930 Msa1116150:intron 25.0%
!! GTTTTGTCACTAAAATTATG+AGG + chr7_3:63731020-63731039 None:intergenic 25.0%
! ATCGATAAAGTAACATAAGA+AGG - chr7_3:63731641-63731660 Msa1116150:intron 25.0%
! AAAGAAAAGAAACTCATAAG+AGG - chr7_3:63730031-63730050 Msa1116150:three_prime_UTR 25.0%
! AGATTGCGGAATTATTTATA+GGG + chr7_3:63730908-63730927 None:intergenic 25.0%
! AAGATTGCGGAATTATTTAT+AGG + chr7_3:63730909-63730928 None:intergenic 25.0%
!! AAATAATTCCGCAATCTTTT+TGG - chr7_3:63730911-63730930 Msa1116150:intron 25.0%
!! GTTTTGTCACTAAAATTATG+AGG + chr7_3:63731020-63731039 None:intergenic 25.0%
! ATCGATAAAGTAACATAAGA+AGG - chr7_3:63731641-63731660 Msa1116150:intron 25.0%
! TGAGTTTCTTTTCTTTTTCC+AGG + chr7_3:63730027-63730046 None:intergenic 30.0%
GGCCAAATAATTGATTGATA+AGG - chr7_3:63730052-63730071 Msa1116150:three_prime_UTR 30.0%
AAAACCAAACCAAAAATGCA+AGG - chr7_3:63730085-63730104 Msa1116150:three_prime_UTR 30.0%
CAAAACTGCAGATATTTACA+GGG + chr7_3:63730261-63730280 None:intergenic 30.0%
ACAAAACTGCAGATATTTAC+AGG + chr7_3:63730262-63730281 None:intergenic 30.0%
! ACACTAACGGAAAATTTTGT+AGG + chr7_3:63730804-63730823 None:intergenic 30.0%
ACAGGGAATAAAAACACTAA+CGG + chr7_3:63730335-63730354 None:intergenic 30.0%
! ACACTAACGGAAAATTTTGT+AGG - chr7_3:63730804-63730823 Msa1116150:intron 30.0%
! CACTAACGGAAAATTTTGTA+GGG - chr7_3:63730805-63730824 Msa1116150:intron 30.0%
AACCCAAAAGAAAGAAGAAA+GGG - chr7_3:63731428-63731447 Msa1116150:intron 30.0%
! AACCCTTTCTTCTTTCTTTT+GGG + chr7_3:63731433-63731452 None:intergenic 30.0%
! TAACCCTTTCTTCTTTCTTT+TGG + chr7_3:63731434-63731453 None:intergenic 30.0%
!! GTGTATGGTTGTTTTCATAT+CGG - chr7_3:63731683-63731702 Msa1116150:CDS 30.0%
!! TGTATGGTTGTTTTCATATC+GGG - chr7_3:63731684-63731703 Msa1116150:CDS 30.0%
! TGAGTTTCTTTTCTTTTTCC+AGG + chr7_3:63730027-63730046 None:intergenic 30.0%
GGCCAAATAATTGATTGATA+AGG - chr7_3:63730052-63730071 Msa1116150:three_prime_UTR 30.0%
AAAACCAAACCAAAAATGCA+AGG - chr7_3:63730085-63730104 Msa1116150:three_prime_UTR 30.0%
CAAAACTGCAGATATTTACA+GGG + chr7_3:63730261-63730280 None:intergenic 30.0%
ACAAAACTGCAGATATTTAC+AGG + chr7_3:63730262-63730281 None:intergenic 30.0%
! ACACTAACGGAAAATTTTGT+AGG + chr7_3:63730804-63730823 None:intergenic 30.0%
ACAGGGAATAAAAACACTAA+CGG + chr7_3:63730335-63730354 None:intergenic 30.0%
! ACACTAACGGAAAATTTTGT+AGG - chr7_3:63730804-63730823 Msa1116150:intron 30.0%
! CACTAACGGAAAATTTTGTA+GGG - chr7_3:63730805-63730824 Msa1116150:intron 30.0%
AACCCAAAAGAAAGAAGAAA+GGG - chr7_3:63731428-63731447 Msa1116150:intron 30.0%
! AACCCTTTCTTCTTTCTTTT+GGG + chr7_3:63731433-63731452 None:intergenic 30.0%
! TAACCCTTTCTTCTTTCTTT+TGG + chr7_3:63731434-63731453 None:intergenic 30.0%
!! GTGTATGGTTGTTTTCATAT+CGG - chr7_3:63731683-63731702 Msa1116150:CDS 30.0%
!! TGTATGGTTGTTTTCATATC+GGG - chr7_3:63731684-63731703 Msa1116150:CDS 30.0%
AAAAACAGGAGAGTCCATTA+AGG - chr7_3:63730117-63730136 Msa1116150:three_prime_UTR 35.0%
AATTACCTTCTCTTGAACAG+TGG + chr7_3:63730197-63730216 None:intergenic 35.0%
ACAGGGACTAAAAACACTAA+CGG - chr7_3:63730791-63730810 Msa1116150:intron 35.0%
CACGAGGCTAATTATTATTG+AGG - chr7_3:63731048-63731067 Msa1116150:intron 35.0%
CAACCCAAAAGAAAGAAGAA+AGG - chr7_3:63731427-63731446 Msa1116150:intron 35.0%
TATGGAACTAGTGGTACTTA+CGG - chr7_3:63731600-63731619 Msa1116150:intron 35.0%
AGAACAATCCACGTAAAAGT+AGG + chr7_3:63731766-63731785 None:intergenic 35.0%
AAAAACAGGAGAGTCCATTA+AGG - chr7_3:63730117-63730136 Msa1116150:three_prime_UTR 35.0%
AATTACCTTCTCTTGAACAG+TGG + chr7_3:63730197-63730216 None:intergenic 35.0%
ACAGGGACTAAAAACACTAA+CGG - chr7_3:63730791-63730810 Msa1116150:intron 35.0%
CACGAGGCTAATTATTATTG+AGG - chr7_3:63731048-63731067 Msa1116150:intron 35.0%
CAACCCAAAAGAAAGAAGAA+AGG - chr7_3:63731427-63731446 Msa1116150:intron 35.0%
TATGGAACTAGTGGTACTTA+CGG - chr7_3:63731600-63731619 Msa1116150:intron 35.0%
AGAACAATCCACGTAAAAGT+AGG + chr7_3:63731766-63731785 None:intergenic 35.0%
ACCAAACCAAAAATGCAAGG+AGG - chr7_3:63730088-63730107 Msa1116150:three_prime_UTR 40.0%
!!! TCCTCCTTGCATTTTTGGTT+TGG + chr7_3:63730092-63730111 None:intergenic 40.0%
! TTTGCTCCTCCTTGCATTTT+TGG + chr7_3:63730097-63730116 None:intergenic 40.0%
CAAGGAGGAGCAAAAAAAAC+AGG - chr7_3:63730103-63730122 Msa1116150:three_prime_UTR 40.0%
TCAACAACTCTTCACTCATG+TGG - chr7_3:63731071-63731090 Msa1116150:intron 40.0%
ATCACATGATCCCTTGCAAA+AGG - chr7_3:63731398-63731417 Msa1116150:intron 40.0%
! TCTCTTTTGCCATGAGTTTG+TGG - chr7_3:63731735-63731754 Msa1116150:CDS 40.0%
TAGGAACTTCCACAAACTCA+TGG + chr7_3:63731747-63731766 None:intergenic 40.0%
!! TGGAAGTTCCTACTTTTACG+TGG - chr7_3:63731755-63731774 Msa1116150:exon 40.0%
ACCAAACCAAAAATGCAAGG+AGG - chr7_3:63730088-63730107 Msa1116150:three_prime_UTR 40.0%
!!! TCCTCCTTGCATTTTTGGTT+TGG + chr7_3:63730092-63730111 None:intergenic 40.0%
! TTTGCTCCTCCTTGCATTTT+TGG + chr7_3:63730097-63730116 None:intergenic 40.0%
CAAGGAGGAGCAAAAAAAAC+AGG - chr7_3:63730103-63730122 Msa1116150:three_prime_UTR 40.0%
TCAACAACTCTTCACTCATG+TGG - chr7_3:63731071-63731090 Msa1116150:intron 40.0%
ATCACATGATCCCTTGCAAA+AGG - chr7_3:63731398-63731417 Msa1116150:intron 40.0%
! TCTCTTTTGCCATGAGTTTG+TGG - chr7_3:63731735-63731754 Msa1116150:CDS 40.0%
TAGGAACTTCCACAAACTCA+TGG + chr7_3:63731747-63731766 None:intergenic 40.0%
!! TGGAAGTTCCTACTTTTACG+TGG - chr7_3:63731755-63731774 Msa1116150:exon 40.0%
! TTTGGCTGAAGCACCAATGT+TGG + chr7_3:63730152-63730171 None:intergenic 45.0%
! ATTGGTGCTTCAGCCAAATC+TGG - chr7_3:63730154-63730173 Msa1116150:three_prime_UTR 45.0%
! GGTCTTTTCCATGCCAGATT+TGG + chr7_3:63730170-63730189 None:intergenic 45.0%
ATCTGGCATGGAAAAGACCA+AGG - chr7_3:63730171-63730190 Msa1116150:three_prime_UTR 45.0%
GACAAAACTCTTTGCTCACG+AGG - chr7_3:63731032-63731051 Msa1116150:intron 45.0%
TGATCCCTTGCAAAAGGAGA+TGG - chr7_3:63731404-63731423 Msa1116150:intron 45.0%
! GTTGCCATCTCCTTTTGCAA+GGG + chr7_3:63731411-63731430 None:intergenic 45.0%
CCTCTTTATCAAGCTCAGTC+TGG + chr7_3:63731458-63731477 None:intergenic 45.0%
CCAGACTGAGCTTGATAAAG+AGG - chr7_3:63731455-63731474 Msa1116150:intron 45.0%
CTCAAACGAGGAGTCAGTTT+GGG - chr7_3:63731562-63731581 Msa1116150:intron 45.0%
GTCACATGGTATGGAACTAG+TGG - chr7_3:63731591-63731610 Msa1116150:intron 45.0%
CAACCATACACACTACGCTA+GGG + chr7_3:63731674-63731693 None:intergenic 45.0%
ACAACCATACACACTACGCT+AGG + chr7_3:63731675-63731694 None:intergenic 45.0%
! TTTGGCTGAAGCACCAATGT+TGG + chr7_3:63730152-63730171 None:intergenic 45.0%
! ATTGGTGCTTCAGCCAAATC+TGG - chr7_3:63730154-63730173 Msa1116150:three_prime_UTR 45.0%
! GGTCTTTTCCATGCCAGATT+TGG + chr7_3:63730170-63730189 None:intergenic 45.0%
ATCTGGCATGGAAAAGACCA+AGG - chr7_3:63730171-63730190 Msa1116150:three_prime_UTR 45.0%
GACAAAACTCTTTGCTCACG+AGG - chr7_3:63731032-63731051 Msa1116150:intron 45.0%
TGATCCCTTGCAAAAGGAGA+TGG - chr7_3:63731404-63731423 Msa1116150:intron 45.0%
! GTTGCCATCTCCTTTTGCAA+GGG + chr7_3:63731411-63731430 None:intergenic 45.0%
CCTCTTTATCAAGCTCAGTC+TGG + chr7_3:63731458-63731477 None:intergenic 45.0%
CCAGACTGAGCTTGATAAAG+AGG - chr7_3:63731455-63731474 Msa1116150:intron 45.0%
CTCAAACGAGGAGTCAGTTT+GGG - chr7_3:63731562-63731581 Msa1116150:intron 45.0%
GTCACATGGTATGGAACTAG+TGG - chr7_3:63731591-63731610 Msa1116150:intron 45.0%
CAACCATACACACTACGCTA+GGG + chr7_3:63731674-63731693 None:intergenic 45.0%
ACAACCATACACACTACGCT+AGG + chr7_3:63731675-63731694 None:intergenic 45.0%
GTTGGCAGCTGTCTCCTTAA+TGG + chr7_3:63730134-63730153 None:intergenic 50.0%
AAGGAGACAGCTGCCAACAT+TGG - chr7_3:63730136-63730155 Msa1116150:three_prime_UTR 50.0%
TGCTTCAGCCAAATCTGGCA+TGG - chr7_3:63730159-63730178 Msa1116150:three_prime_UTR 50.0%
CTTCTCTTGAACAGTGGCCT+TGG + chr7_3:63730191-63730210 None:intergenic 50.0%
CAAGGCCACTGTTCAAGAGA+AGG - chr7_3:63730189-63730208 Msa1116150:three_prime_UTR 50.0%
! GGTTGCCATCTCCTTTTGCA+AGG + chr7_3:63731412-63731431 None:intergenic 50.0%
GCTCAAACGAGGAGTCAGTT+TGG - chr7_3:63731561-63731580 Msa1116150:intron 50.0%
AGTTTGGGCTGTGAGTCACA+TGG - chr7_3:63731577-63731596 Msa1116150:intron 50.0%
GGAACTAGTGGTACTTACGG+TGG - chr7_3:63731603-63731622 Msa1116150:intron 50.0%
GTACCCTAGCGTAGTGTGTA+TGG - chr7_3:63731668-63731687 Msa1116150:CDS 50.0%
GTTGGCAGCTGTCTCCTTAA+TGG + chr7_3:63730134-63730153 None:intergenic 50.0%
AAGGAGACAGCTGCCAACAT+TGG - chr7_3:63730136-63730155 Msa1116150:three_prime_UTR 50.0%
TGCTTCAGCCAAATCTGGCA+TGG - chr7_3:63730159-63730178 Msa1116150:three_prime_UTR 50.0%
CTTCTCTTGAACAGTGGCCT+TGG + chr7_3:63730191-63730210 None:intergenic 50.0%
CAAGGCCACTGTTCAAGAGA+AGG - chr7_3:63730189-63730208 Msa1116150:three_prime_UTR 50.0%
! GGTTGCCATCTCCTTTTGCA+AGG + chr7_3:63731412-63731431 None:intergenic 50.0%
GCTCAAACGAGGAGTCAGTT+TGG - chr7_3:63731561-63731580 Msa1116150:intron 50.0%
AGTTTGGGCTGTGAGTCACA+TGG - chr7_3:63731577-63731596 Msa1116150:intron 50.0%
GGAACTAGTGGTACTTACGG+TGG - chr7_3:63731603-63731622 Msa1116150:intron 50.0%
GTACCCTAGCGTAGTGTGTA+TGG - chr7_3:63731668-63731687 Msa1116150:CDS 50.0%
GGGCTGTGAGTCACATGGTA+TGG - chr7_3:63731582-63731601 Msa1116150:intron 55.0%
GGGCTGTGAGTCACATGGTA+TGG - chr7_3:63731582-63731601 Msa1116150:intron 55.0%
ACCACACCACGGGAACTGGT+GGG - chr7_3:63731535-63731554 Msa1116150:intron 60.0%
ACCACACCACGGGAACTGGT+GGG - chr7_3:63731535-63731554 Msa1116150:intron 60.0%
CACAACGCTGCAGCCACCAC+CGG - chr7_3:63731489-63731508 Msa1116150:intron 65.0%
ACAACGCTGCAGCCACCACC+GGG - chr7_3:63731490-63731509 Msa1116150:intron 65.0%
AGCCACCACCGGGCACCAAT+TGG - chr7_3:63731500-63731519 Msa1116150:intron 65.0%
GCCACCACCGGGCACCAATT+GGG - chr7_3:63731501-63731520 Msa1116150:intron 65.0%
CCACCACCGGGCACCAATTG+GGG - chr7_3:63731502-63731521 Msa1116150:intron 65.0%
ACCGGGCACCAATTGGGGCA+GGG - chr7_3:63731507-63731526 Msa1116150:intron 65.0%
! ACCCTGCCCCAATTGGTGCC+CGG + chr7_3:63731511-63731530 None:intergenic 65.0%
GGTGTCCACCCTGCCCCAAT+TGG + chr7_3:63731518-63731537 None:intergenic 65.0%
GCAGGGTGGACACCACACCA+CGG - chr7_3:63731524-63731543 Msa1116150:intron 65.0%
CAGGGTGGACACCACACCAC+GGG - chr7_3:63731525-63731544 Msa1116150:intron 65.0%
GGACACCACACCACGGGAAC+TGG - chr7_3:63731531-63731550 Msa1116150:intron 65.0%
CACCACACCACGGGAACTGG+TGG - chr7_3:63731534-63731553 Msa1116150:intron 65.0%
CCACACCACGGGAACTGGTG+GGG - chr7_3:63731536-63731555 Msa1116150:intron 65.0%
CTGGTGGGGCTGCTCAAACG+AGG - chr7_3:63731550-63731569 Msa1116150:intron 65.0%
CACAACGCTGCAGCCACCAC+CGG - chr7_3:63731489-63731508 Msa1116150:intron 65.0%
ACAACGCTGCAGCCACCACC+GGG - chr7_3:63731490-63731509 Msa1116150:intron 65.0%
AGCCACCACCGGGCACCAAT+TGG - chr7_3:63731500-63731519 Msa1116150:intron 65.0%
GCCACCACCGGGCACCAATT+GGG - chr7_3:63731501-63731520 Msa1116150:intron 65.0%
CCACCACCGGGCACCAATTG+GGG - chr7_3:63731502-63731521 Msa1116150:intron 65.0%
ACCGGGCACCAATTGGGGCA+GGG - chr7_3:63731507-63731526 Msa1116150:intron 65.0%
! ACCCTGCCCCAATTGGTGCC+CGG + chr7_3:63731511-63731530 None:intergenic 65.0%
GGTGTCCACCCTGCCCCAAT+TGG + chr7_3:63731518-63731537 None:intergenic 65.0%
GCAGGGTGGACACCACACCA+CGG - chr7_3:63731524-63731543 Msa1116150:intron 65.0%
CAGGGTGGACACCACACCAC+GGG - chr7_3:63731525-63731544 Msa1116150:intron 65.0%
GGACACCACACCACGGGAAC+TGG - chr7_3:63731531-63731550 Msa1116150:intron 65.0%
CACCACACCACGGGAACTGG+TGG - chr7_3:63731534-63731553 Msa1116150:intron 65.0%
CCACACCACGGGAACTGGTG+GGG - chr7_3:63731536-63731555 Msa1116150:intron 65.0%
CTGGTGGGGCTGCTCAAACG+AGG - chr7_3:63731550-63731569 Msa1116150:intron 65.0%
! CCCCAATTGGTGCCCGGTGG+TGG + chr7_3:63731505-63731524 None:intergenic 70.0%
! CTGCCCCAATTGGTGCCCGG+TGG + chr7_3:63731508-63731527 None:intergenic 70.0%
CACCGGGCACCAATTGGGGC+AGG - chr7_3:63731506-63731525 Msa1116150:intron 70.0%
GGGCACCAATTGGGGCAGGG+TGG - chr7_3:63731510-63731529 Msa1116150:intron 70.0%
CCCCACCAGTTCCCGTGGTG+TGG + chr7_3:63731539-63731558 None:intergenic 70.0%
AGCAGCCCCACCAGTTCCCG+TGG + chr7_3:63731544-63731563 None:intergenic 70.0%
! CCCCAATTGGTGCCCGGTGG+TGG + chr7_3:63731505-63731524 None:intergenic 70.0%
! CTGCCCCAATTGGTGCCCGG+TGG + chr7_3:63731508-63731527 None:intergenic 70.0%
CACCGGGCACCAATTGGGGC+AGG - chr7_3:63731506-63731525 Msa1116150:intron 70.0%
GGGCACCAATTGGGGCAGGG+TGG - chr7_3:63731510-63731529 Msa1116150:intron 70.0%
CCCCACCAGTTCCCGTGGTG+TGG + chr7_3:63731539-63731558 None:intergenic 70.0%
AGCAGCCCCACCAGTTCCCG+TGG + chr7_3:63731544-63731563 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 63730015 63731840 63730015 ID=Msa1116150;Name=Msa1116150
chr7_3 mRNA 63730015 63731840 63730015 ID=Msa1116150-mRNA-1;Parent=Msa1116150;Name=Msa1116150-mRNA-1;_AED=0.28;_eAED=0.28;_QI=85|1|1|1|1|1|2|250|105
chr7_3 exon 63730015 63730471 63730015 ID=Msa1116150-mRNA-1:exon:15011;Parent=Msa1116150-mRNA-1
chr7_3 exon 63731645 63731840 63731645 ID=Msa1116150-mRNA-1:exon:15010;Parent=Msa1116150-mRNA-1
chr7_3 five_prime_UTR 63731756 63731840 63731756 ID=Msa1116150-mRNA-1:five_prime_utr;Parent=Msa1116150-mRNA-1
chr7_3 CDS 63731645 63731755 63731645 ID=Msa1116150-mRNA-1:cds;Parent=Msa1116150-mRNA-1
chr7_3 CDS 63730265 63730471 63730265 ID=Msa1116150-mRNA-1:cds;Parent=Msa1116150-mRNA-1
chr7_3 three_prime_UTR 63730015 63730264 63730015 ID=Msa1116150-mRNA-1:three_prime_utr;Parent=Msa1116150-mRNA-1
Gene Sequence

>Msa1116150

ATGCAAGGAGGAGCAAAAAAAACAGGAGAGTCCATTAAGGAGACAGCTGCCAACATTGGTGCTTCAGCCAAATCTGGCATGGAAAAGACCAAGGCCACTGTTCAAGAGAAGACAGAGAAGATGACATCACATGATCCCTTGCAAAAGGAGATGGCAACCCAAAAGAAAGAAGAAAGGGTTAACCAGACTGAGCTTGATAAAGAGGCAGCGCGTGAACACAACGCTGCAGCCACCACCGGGCACCAATTGGGGCAGGGTGGACACCACACCACGGGAACTGGTGGGGCTGCTCAAACGAGGAGTCAGTTTGGGCTGTGA

Protein sequence

>Msa1116150

MQGGAKKTGESIKETAANIGASAKSGMEKTKATVQEKTEKMTSHDPLQKEMATQKKEERVNQTELDKEAAREHNAAATTGHQLGQGGHHTTGTGGAAQTRSQFGL*